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<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8M4</accession>
    <name>B1Y8M4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1174</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350522.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8M4"/>
    <dbReference type="STRING" id="444157.Tneu_1174"/>
    <dbReference type="GeneID" id="6165007"/>
    <dbReference type="KEGG" id="tne:Tneu_1174"/>
    <dbReference type="HOGENOM" id="CLU_2695917_0_0_2"/>
    <dbReference type="OrthoDB" id="377185at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="73" mass="7884" checksum="33D2A4147DB0F856" modified="2008-05-20" version="1">MESKTRKIPLALIIAAAVVAAYVGLLVAVSYYMSQGEESHVDHGVENVGWSQGNHTTEVGNQTAKRQRKGWGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8R5</accession>
    <name>B1Y8R5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF7491 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1217</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350563.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8R5"/>
    <dbReference type="STRING" id="444157.Tneu_1217"/>
    <dbReference type="GeneID" id="6164359"/>
    <dbReference type="KEGG" id="tne:Tneu_1217"/>
    <dbReference type="eggNOG" id="arCOG05613">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_854230_0_0_2"/>
    <dbReference type="OrthoDB" id="29120at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055914">
        <property type="entry name" value="DUF7491"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24319">
        <property type="entry name" value="DUF7491"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="278"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="DUF7491" evidence="3">
        <location>
            <begin position="188"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="159"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF24319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="304" mass="33719" checksum="66FA922F1865BF99" modified="2008-05-20" version="1">MRKLPLLLLAALVWGQLVSWVPPHAQLGQIYIYNATHFVLYLEGRPIYLTQVGLVFNGSKAEAQAAVQYLMAQCRYVAFDVHNATSGEWMGDIYCTKDGTSWLWLRWLPLRFAAYRGYVEFVRENLTVATPIGVYSGYVPAGWYLDRATKAVVRLPSSTAAIVEEVDKLQKTVESLKSELEKYSAQRQELANVAAQLRSQLEALEMQKERLAELLRQKDGELSALSANLRACLADNEALRNRLEELERRNRELAARIVNTSAAAPAVTSAEGGQAGGWPIHLALIAAVAAVGAALLVYKRRSAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8S4</accession>
    <name>B1Y8S4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1226</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350572.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8S4"/>
    <dbReference type="STRING" id="444157.Tneu_1226"/>
    <dbReference type="GeneID" id="6166141"/>
    <dbReference type="KEGG" id="tne:Tneu_1226"/>
    <dbReference type="eggNOG" id="arCOG05605">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1212636_0_0_2"/>
    <dbReference type="OrthoDB" id="27619at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="221" mass="25683" checksum="E3556C06AC5607E9" modified="2008-05-20" version="1">MFKPRADPCIFLHSSPDDWLLLLGERLSGELVRRFRHLARDVDDLVQLVADNPGILWVGLRGLEVGGPFRNEWTLFVEGGYVAPHARARWLYVETGERLDVRVQVSPCFLLSSLDKPGVRYTWRNRASTIFRWVSEVPRLQPLEVFRRAFPAELRELAHSRGYAWVAWTRWRDRRNRHLAEWLYWLDTGRLAHIDALLGRMCTSPSCTKNPSSEGLYISAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8S9</accession>
    <name>B1Y8S9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1231</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350577.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8S9"/>
    <dbReference type="GeneID" id="6166241"/>
    <dbReference type="KEGG" id="tne:Tneu_1231"/>
    <dbReference type="eggNOG" id="arCOG00130">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_677270_0_0_2"/>
    <dbReference type="OrthoDB" id="117970at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23518">
        <property type="entry name" value="C-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23518:SF2">
        <property type="entry name" value="MAJOR FACILITATOR SUPERFAMILY TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="162"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="220"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="259"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="285"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="308"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="349"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="374"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily (MFS) profile" evidence="2">
        <location>
            <begin position="10"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="397" mass="42553" checksum="15CCCAA89FD828A7" modified="2008-05-20" version="1">MGLSYWLRGNVGAMVVSWFLFAISGSLTQPYMSMYLHMLGASDIEIGLVRSLGSLAVLLTILPGGVLTDVVGRKRSIVVGTWGIAAVQFLYAVVQDWRQFAVVYVVDWALHFYQPALTAILLDSLPPHRRGGGMMLTAVLPQVPWLFLPPVGGYLLDHMGLLGMRLSFVLSGLVSVTVAVLRMRALEETIEVRPLDGRRLLREVVRSYAIWRGVRLMSPFMAYVAFLGFVTSFAGTALQTFGVLYAVNVVGIDNTSWGVTQSAATAVGILFGLVLMSVIDKAPRVTALFSGLLLMSVGYLMLGLWKNIVSLVTAAIIVGVGGEVAMSIRRALVGDLITPENRGRVMGSTLALEYMGSIAGGVSIAHLYAASPHLAFLASGIALAAASLPLLRRLASP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8T9</accession>
    <name>SFSA_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Sugar fermentation stimulation protein homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">sfsA</name>
        <name type="ordered locus">Tneu_1241</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SfsA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350587.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8T9"/>
    <dbReference type="SMR" id="B1Y8T9"/>
    <dbReference type="STRING" id="444157.Tneu_1241"/>
    <dbReference type="GeneID" id="6166035"/>
    <dbReference type="KEGG" id="tne:Tneu_1241"/>
    <dbReference type="eggNOG" id="arCOG04115">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052299_1_0_2"/>
    <dbReference type="OrthoDB" id="34139at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00095">
        <property type="entry name" value="SfsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005224">
        <property type="entry name" value="SfsA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040452">
        <property type="entry name" value="SfsA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041465">
        <property type="entry name" value="SfsA_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00230">
        <property type="entry name" value="sfsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30545">
        <property type="entry name" value="SUGAR FERMENTATION STIMULATION PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30545:SF2">
        <property type="entry name" value="SUGAR FERMENTATION STIMULATION PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03749">
        <property type="entry name" value="SfsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17746">
        <property type="entry name" value="SfsA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000093595" description="Sugar fermentation stimulation protein homolog">
        <location>
            <begin position="1"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00095"/>
        </source>
    </evidence>
    <sequence length="233" mass="26126" checksum="9E26604342A8F5EA" modified="2008-05-20" version="1">MAHVCLPLDEPDARGVFKRRLNRFVGVAEIGGADELVHIHDPGRLAELLYPGSVIWARRKKTGKTRYYLTAVELADELVFVDSAKHNKIASWLIESGVLLPGYRVERHEPAYGKGRFDLLLRGPKGEKALVEVKGVTLEVGGRALFPDAPTTRGARHMEELARAAADGFEAHVVFLVLRKKAAVFSPNWEMDRRFAEALARAYKSGVYVHAVKLETSRWCLKYVEKLPIDLQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8V0</accession>
    <name>B1Y8V0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">G domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1252</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350598.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8V0"/>
    <dbReference type="STRING" id="444157.Tneu_1252"/>
    <dbReference type="GeneID" id="6165980"/>
    <dbReference type="KEGG" id="tne:Tneu_1252"/>
    <dbReference type="eggNOG" id="arCOG00364">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144586_0_0_2"/>
    <dbReference type="OrthoDB" id="26794at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00882">
        <property type="entry name" value="Ras_like_GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G" evidence="1">
        <location>
            <begin position="9"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="165" mass="18550" checksum="D07813CDAB7CA0F9" modified="2008-05-20" version="1">MFRRRESKTVVFMGIGGVGKTTYIYRVLGIAKAPRVTRKPGVYQITAGDTLLYLVDTPGQYAVEVAQRYYEAIKTFGTRIDLVVYVYSVVDPPTLQALWEIENWVSRYPPHTKVLLGNKRDLAEEVGVFTEGDDAATALGSVRLYYTSALKDEPEELLSHLVENL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8V7</accession>
    <name>B1Y8V7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Extracellular solute-binding protein family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1259</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350605.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8V7"/>
    <dbReference type="STRING" id="444157.Tneu_1259"/>
    <dbReference type="GeneID" id="6165946"/>
    <dbReference type="KEGG" id="tne:Tneu_1259"/>
    <dbReference type="eggNOG" id="arCOG01799">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_18_2_2"/>
    <dbReference type="OrthoDB" id="30671at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd13530">
        <property type="entry name" value="PBP2_peptides_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35936:SF19">
        <property type="entry name" value="AMINO-ACID-BINDING PROTEIN YXEM-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35936">
        <property type="entry name" value="MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Solute-binding protein family 3/N-terminal" evidence="2">
        <location>
            <begin position="69"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="295" mass="32052" checksum="1E5AF79CCE6467FB" modified="2008-05-20" version="1">MKSIATAVVALLVGVVLGYLVGVSTAPKTPAPVTTAVPVATTTSSATSAPASPQAACPVSVDVIKKRGKLIVGTDATWPPWEWVMGDKIVGWDIDIAREIAKALGVQLEIRDMRFAGLLEAVRKGDVDLAISAITWTSEREKVLEFSMPYYRESIVVVTKASRTDINKVEDLYGKTVGVQIGTTHEEWAAANLEKPGKATVRRYDKVYPYMVEVLKRGDVDAIILDRSIATALVKKFPDLKIAFEIPGSAGYISVAMPKCAQDLKLVVDQVIENLTQTGKLDEIFQRNFELFLGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Y5</accession>
    <name>B1Y8Y5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphate uptake regulator, PhoU</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1287</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350633.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Y5"/>
    <dbReference type="STRING" id="444157.Tneu_1287"/>
    <dbReference type="GeneID" id="6165562"/>
    <dbReference type="KEGG" id="tne:Tneu_1287"/>
    <dbReference type="eggNOG" id="arCOG00318">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069302_1_0_2"/>
    <dbReference type="OrthoDB" id="40991at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030643">
        <property type="term" value="P:intracellular phosphate ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045936">
        <property type="term" value="P:negative regulation of phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="entry name" value="Phosphate transport system protein phou homolog 2, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028366">
        <property type="entry name" value="PhoU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026022">
        <property type="entry name" value="PhoU_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42930">
        <property type="entry name" value="PHOSPHATE-SPECIFIC TRANSPORT SYSTEM ACCESSORY PROTEIN PHOU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42930:SF2">
        <property type="entry name" value="PHOU DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04014">
        <property type="entry name" value="MazE_antitoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01895">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00966">
        <property type="entry name" value="SpoVT_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="AbrB/MazE/MraZ-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109755">
        <property type="entry name" value="PhoU-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="1">
        <location>
            <begin position="8"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="297" mass="33346" checksum="7038D55B31FB06BD" modified="2008-05-20" version="1">MELRRIIRVGERSFGVTLPKEWVESHGLTVGSPVKLLVDRDKITIFPSSEATAARRVRVGGEDVEKLTRDVIAYYIEGVDEIEVETGDISALVTKIEGKLPGVVLMEVGGLLRLKIVTREDVDIDEAVRSMYTTVDAMFALFLQMLSGGALKYAEEILRLDDQLDKLYFFSLRTVKRNIAQRPEHYVDYVITIKNLEHVGDAIDRATNYYLQNEMLCTAGVKTIFEKVYRYLQDSFNAFYNNDAGKALEVLLRRADLARETLQPPCPQATAVMHEAASIVGFAADIAEAAYSKASRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Y8</accession>
    <name>B1Y8Y8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Methylated-DNA--protein-cysteine methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1290</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 4-O-methyl-thymidine in DNA + L-cysteinyl-[protein] = a thymidine in DNA + S-methyl-L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:53428"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:13555"/>
            <dbReference type="Rhea" id="RHEA-COMP:13556"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:137386"/>
            <dbReference type="ChEBI" id="CHEBI:137387"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a 6-O-methyl-2'-deoxyguanosine in DNA + L-cysteinyl-[protein] = S-methyl-L-cysteinyl-[protein] + a 2'-deoxyguanosine in DNA</text>
            <dbReference type="Rhea" id="RHEA:24000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:11367"/>
            <dbReference type="Rhea" id="RHEA-COMP:11368"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:85445"/>
            <dbReference type="ChEBI" id="CHEBI:85448"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350636.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Y8"/>
    <dbReference type="STRING" id="444157.Tneu_1290"/>
    <dbReference type="GeneID" id="6165675"/>
    <dbReference type="KEGG" id="tne:Tneu_1290"/>
    <dbReference type="eggNOG" id="arCOG02724">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1754770_0_0_2"/>
    <dbReference type="OrthoDB" id="372118at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003908">
        <property type="term" value="F:methylated-DNA-[protein]-cysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06445">
        <property type="entry name" value="ATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001497">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014048">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036217">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNAb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00589">
        <property type="entry name" value="ogt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10815">
        <property type="entry name" value="METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10815:SF13">
        <property type="entry name" value="METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01035">
        <property type="entry name" value="DNA_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46767">
        <property type="entry name" value="Methylated DNA-protein cysteine methyltransferase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00374">
        <property type="entry name" value="MGMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="2 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding" evidence="7">
        <location>
            <begin position="50"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00049348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="150" mass="16700" checksum="8234D7D7C6E53B4B" modified="2008-05-20" version="1">MICARYGPAAVGWDGVRTYVNPPRCSRWVELRDIVEELPLDRIDRRLLYLLGIPRGYVTTYKLYAEALGTSPRHVGWLMAENPLPVLLPCHRVVKSDMTLGGYAGGVELKRRLLEYEGALCGGKPCRIAKPRPVADIKNAILQSLGVEPT</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y901</accession>
    <name>RL15_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein uL15</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">50S ribosomal protein L15</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl15</name>
        <name type="ordered locus">Tneu_1303</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL15 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350649.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y901"/>
    <dbReference type="SMR" id="B1Y901"/>
    <dbReference type="STRING" id="444157.Tneu_1303"/>
    <dbReference type="GeneID" id="6165604"/>
    <dbReference type="KEGG" id="tne:Tneu_1303"/>
    <dbReference type="eggNOG" id="arCOG00779">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_109163_0_0_2"/>
    <dbReference type="OrthoDB" id="9418at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.990.10:FF:000001">
        <property type="entry name" value="50S ribosomal protein L15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.100.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.990.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01341">
        <property type="entry name" value="Ribosomal_uL15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027386">
        <property type="entry name" value="Rbsml_uL15_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030878">
        <property type="entry name" value="Ribosomal_uL15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021131">
        <property type="entry name" value="Ribosomal_uL15/eL18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036227">
        <property type="entry name" value="Ribosomal_uL15/eL18_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001196">
        <property type="entry name" value="Ribosomal_uL15_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11721">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L27A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11721:SF3">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00828">
        <property type="entry name" value="Ribosomal_L27A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52080">
        <property type="entry name" value="Ribosomal proteins L15p and L18e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00475">
        <property type="entry name" value="RIBOSOMAL_L15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000142892" description="Large ribosomal subunit protein uL15">
        <location>
            <begin position="1"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="3"/>
    <sequence length="156" mass="17276" checksum="325CAB7DDA30CAF7" modified="2008-05-20" version="1">MVRRFKRAVKYRRGSRTHGWGRVGQHRKSGGSGGKGMVGFHKHKWSLVMKYGESGTGWPFYGKHGFKQPQAISIEWRPINVGTLAEVVRGLKREGRVKEEGGRYVVNLVELGFNKLLGGGDVDLPIVVYTPAASRSAVEKIEKAGGEVRIVPAVHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y905</accession>
    <name>B1Y905_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Nucleotidyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1307</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y905"/>
    <dbReference type="STRING" id="444157.Tneu_1307"/>
    <dbReference type="KEGG" id="tne:Tneu_1307"/>
    <dbReference type="eggNOG" id="arCOG00666">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029499_0_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04181">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.10.10">
        <property type="entry name" value="Hexapeptide repeat proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056729">
        <property type="entry name" value="GMPPB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050486">
        <property type="entry name" value="Mannose-1P_guanyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22572">
        <property type="entry name" value="SUGAR-1-PHOSPHATE GUANYL TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25087">
        <property type="entry name" value="GMPPB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="Trimeric LpxA-like enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Nucleotidyl transferase" evidence="2">
        <location>
            <begin position="11"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="Mannose-1-phosphate guanyltransferase C-terminal" evidence="3">
        <location>
            <begin position="305"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF25087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="413" mass="46707" checksum="4D9C4ABCD95A59AC" modified="2008-05-20" version="1">MERVYYMVKIAVIPVGGEAVRLRPLTVETSKAMVRILNRPLVELSILHLAQQGVEEFYFGVRGYHNYRDIYDYFREGGWLYERYGRKVRIRYMPRVETRGNAEAVLATLEYYDIAEPVLVVQGDNIFKLDIQDMYRFHSSHKAFITIALKEEAGNLSEFGVAAVGEDMRILKFVEKPKRREEAPSNLVNTGLYILSEDFRSFFKGEVGQKLYREGKMDFGGDVIPACIETGLPVYGYVTSGYWFDVGTPERYLKAVRFLLRHLPPEELEAEEIAPQIYAQGTSERSKSLKAKIREDIVNNAIRVEGPVLIGRHVQIGGGAYLRESVVDNYVIIGEKTAVEESVVMDRTYVGSGVSIKRSIIGRHVYIGDGAVVEDSVVADNAYVGEGAQLKNVRVWPHKTVERGVKLEGFSLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y913</accession>
    <name>B1Y913_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1315</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350661.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y913"/>
    <dbReference type="STRING" id="444157.Tneu_1315"/>
    <dbReference type="GeneID" id="6166288"/>
    <dbReference type="KEGG" id="tne:Tneu_1315"/>
    <dbReference type="eggNOG" id="arCOG00186">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_92_0_2"/>
    <dbReference type="OrthoDB" id="18209at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03216">
        <property type="entry name" value="ABC_Carb_Monos_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050107">
        <property type="entry name" value="ABC_carbohydrate_import_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43790">
        <property type="entry name" value="CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43790:SF9">
        <property type="entry name" value="GALACTOFURANOSE TRANSPORTER ATP-BINDING PROTEIN YTFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="222"/>
            <end position="463"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="463" mass="50790" checksum="1CD3C7046398927C" modified="2008-05-20" version="1">MAFLKAVGIRKVFPGVVALDGVDFEVGRGEVHGLLGENGAGKSTLISILYGVYLPDGGAIYIDGRKTDIKSPRHAAELGIALISQHFALVDTLTVEENLKLSGVDVEKAVELGGRVGVELPLDKYVGELTVGEKQRVEIVKALARESKILLMDEPTALLGPREAKRLLETVRALASMGKAVVFVTHKIREAIEVADRITVLRRGRKVATYERPYDEETLLKAMFQGVVRRGSQRSRGAGEVVYRAVGIAGEKIRKADIEIRRGEVVAVVGVAGNGQEELMALLAGFKKPRAGRVYIEGVDLTGEPFHEFLRRGVAYLPEDRGYALAKELSVVDNFRIRCINRCVEKLMEAKEALDIDFPSPNARVAALSGGNQQKLLLARELWLREPYILVASYPTRGLDLETAEKFYALVRSRVRGGAVVSLEDVDEAVERADRIYVVSRGEVVAEFTPPFDLEEIAEAMTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="101" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y920</accession>
    <name>B1Y920_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 9">Methionine aminopeptidase</fullName>
            <shortName evidence="8">MAP</shortName>
            <shortName evidence="8">MetAP</shortName>
            <ecNumber evidence="8 9">3.4.11.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Peptidase M</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">map</name>
        <name evidence="11" type="ordered locus">Tneu_1322</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 9">
            <text>Release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.</text>
            <dbReference type="EC" id="3.4.11.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <cofactor evidence="8">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="8">Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="8">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.18" evidence="8 9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350668.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y920"/>
    <dbReference type="STRING" id="444157.Tneu_1322"/>
    <dbReference type="GeneID" id="6165294"/>
    <dbReference type="KEGG" id="tne:Tneu_1322"/>
    <dbReference type="eggNOG" id="arCOG01001">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015857_7_0_2"/>
    <dbReference type="OrthoDB" id="372008at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004239">
        <property type="term" value="F:initiator methionyl aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="entry name" value="Creatinase/methionine aminopeptidase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01975">
        <property type="entry name" value="MetAP_2_arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050247">
        <property type="entry name" value="Met_Aminopeptidase_Type2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028595">
        <property type="entry name" value="MetAP_archaeal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001714">
        <property type="entry name" value="Pept_M24_MAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002468">
        <property type="entry name" value="Pept_M24A_MAP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00501">
        <property type="entry name" value="met_pdase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45777">
        <property type="entry name" value="METHIONINE AMINOPEPTIDASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45777:SF2">
        <property type="entry name" value="METHIONINE AMINOPEPTIDASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00599">
        <property type="entry name" value="MAPEPTIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="Creatinase/aminopeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 9" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="7 8 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8 9" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase M24" evidence="10">
        <location>
            <begin position="5"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="61"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="186"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="271"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="271"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="291" mass="31770" checksum="19B4AC76CE66D668" modified="2008-05-20" version="1">MLRVLRQVGDVVHRALKYAIDLAQAETPVLEICEKVEGFIRANDAKPAFPVNVSINEVAAHYTARRGDVLRLPKTGVVKIDVGAQRDGYIVDAAVTIAVGPVFSNLAKAARAALETALGAVKPGVKAWQVGESVERVIKSFGFNPIYNLTGHKIERYILHAGYVVPNYPDKTASQAFAVGDVYAVEPFATNGEGYVTDGRDITIYRLVRMRHKTHQHVIDVVSAEAGPLPFSPRWFPQLSDADIESALKAGVLQGYEVLVERSRGYVAQFEDTVYVSEDGAVPLARTLELL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y933</accession>
    <name>B1Y933_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator, CopG/Arc/MetJ family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1336</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350681.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y933"/>
    <dbReference type="STRING" id="444157.Tneu_1336"/>
    <dbReference type="GeneID" id="6165157"/>
    <dbReference type="KEGG" id="tne:Tneu_1336"/>
    <dbReference type="eggNOG" id="arCOG01009">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3113213_0_0_2"/>
    <dbReference type="OrthoDB" id="56938at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22231">
        <property type="entry name" value="RHH_NikR_HicB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="Ribbon-helix-helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="50" mass="5807" checksum="A2CC9BE80854B518" modified="2008-05-20" version="1">MEYERSNVTTVILPKALIRKVDRLVTSGYFKNRGDAIKYAVERLLEKYSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y948</accession>
    <name>B1Y948_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1351</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350696.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y948"/>
    <dbReference type="STRING" id="444157.Tneu_1351"/>
    <dbReference type="GeneID" id="6165272"/>
    <dbReference type="KEGG" id="tne:Tneu_1351"/>
    <dbReference type="eggNOG" id="arCOG05563">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1640033_0_0_2"/>
    <dbReference type="OrthoDB" id="26816at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="161" mass="18139" checksum="086DD420B29FC759" modified="2008-05-20" version="1">MIYIYSERYIDVDLPQITPTCEPPDPRVIPLVGDDLRCLYAALRKSRAVALKARSRIWLALARELKPDAVIYAWGLPIRRGNVIPVYPGGEYRGPGLYYVRSRRELKALLGRAIDGVVLDAGAFDPHLVEQIVKGAVRCDCARCDVVEKLLCDVYREVEVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y965</accession>
    <name>B1Y965_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1368</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350713.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y965"/>
    <dbReference type="STRING" id="444157.Tneu_1368"/>
    <dbReference type="GeneID" id="6164692"/>
    <dbReference type="KEGG" id="tne:Tneu_1368"/>
    <dbReference type="eggNOG" id="arCOG05564">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1640036_0_0_2"/>
    <dbReference type="OrthoDB" id="28848at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="162" mass="17842" checksum="2125389AEA004A53" modified="2008-05-20" version="1">MLPLLESRVRRVLRGLAAEFAYLALVNTSILPPHSLLRRRLIRVIQPEMLSFLAAKIGSDAPDVLVNSTIGMRLGGAPKCELLLDLMPELYQLCVALRTQGGEPLYKAMGEVVVPLAVASIAAGYDEGNILLASFRAAASRGDRDLETVMRYFRRWTVASFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y997</accession>
    <name>B1Y997_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">DNA primase large subunit PriL</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">priL</name>
        <name evidence="9" type="ordered locus">Tneu_1401</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="7">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Heterodimer of a small subunit (PriS) and a large subunit (PriL).</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the eukaryotic-type primase large subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350745.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y997"/>
    <dbReference type="STRING" id="444157.Tneu_1401"/>
    <dbReference type="GeneID" id="6164974"/>
    <dbReference type="KEGG" id="tne:Tneu_1401"/>
    <dbReference type="eggNOG" id="arCOG03013">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052778_0_0_2"/>
    <dbReference type="OrthoDB" id="46081at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006270">
        <property type="term" value="P:DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006269">
        <property type="term" value="P:DNA replication, synthesis of primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06560">
        <property type="entry name" value="PriL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00701">
        <property type="entry name" value="DNA_primase_lrg_arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058560">
        <property type="entry name" value="DNA_primase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007238">
        <property type="entry name" value="DNA_primase_lsu_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023642">
        <property type="entry name" value="DNA_primase_lsu_PriL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10537">
        <property type="entry name" value="DNA PRIMASE LARGE SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10537:SF3">
        <property type="entry name" value="DNA PRIMASE LARGE SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04104">
        <property type="entry name" value="DNA_primase_lrg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26466">
        <property type="entry name" value="DNA_primase_lrg_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140914">
        <property type="entry name" value="PriB N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3 7" id="KW-0235">DNA replication</keyword>
    <keyword evidence="5 7" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 7" id="KW-0639">Primosome</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA primase large subunit C-terminal" evidence="8">
        <location>
            <begin position="237"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="316"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="325"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="349" mass="38845" checksum="E77E9CA711961B59" modified="2008-05-20" version="1">MACNVSLGELACFFPFLDKSAAYLSRRGLLLDAVLADGALVEKALERLRTSLERRLPNPRQCLDAPDATAAAARLALYIAAATKNPHVLRRFADSESKNFTALLRKVPGIQDPRCKIELARDLGVNARPAGEVAAGIIMAVYNSPVAVRWTSYLRYAPQDPYWAMINRPVVRGWVIVPMEDFERLLEESYEERILQIVRENELAVGKVAMSIDLTQLEDVIKRYSQRPVLQAGQATGGADPPCMEAILAALKKGENLPHTARFAITTYLIKRGWDVEQIVELFRASPDFNEKITRYQVMHIAGQAGGRKEYAVPSCETMNSWGLCPTNLRCGVKNPLQYGRRLAVKKSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9A2</accession>
    <name>B1Y9A2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1406</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350750.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9A2"/>
    <dbReference type="STRING" id="444157.Tneu_1406"/>
    <dbReference type="GeneID" id="6166212"/>
    <dbReference type="KEGG" id="tne:Tneu_1406"/>
    <dbReference type="eggNOG" id="arCOG05574">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1640034_0_0_2"/>
    <dbReference type="OrthoDB" id="28807at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="161" mass="18006" checksum="5871D9EE7BB3B7DE" modified="2008-05-20" version="1">MDLCITSGSKGGTGKTTFAEVMAYVWSVISGAPIRVAKPLGRSSSVVDFPAFQLTDRRYLERFLRCKHVVYVVDEDLETVRAVEILHAVARGEVLGVILNKVLGKPGREFTRLYRWMGEVYVVHFDERLAIHRSVGVPPFKMRSIAVLEMAKAAVDIINKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9F4</accession>
    <name>B1Y9F4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1458</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350802.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9F4"/>
    <dbReference type="STRING" id="444157.Tneu_1458"/>
    <dbReference type="GeneID" id="6165377"/>
    <dbReference type="KEGG" id="tne:Tneu_1458"/>
    <dbReference type="eggNOG" id="arCOG00130">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_770784_0_0_2"/>
    <dbReference type="OrthoDB" id="117970at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052714">
        <property type="entry name" value="MFS_Exporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23531">
        <property type="entry name" value="QUINOLENE RESISTANCE PROTEIN NORA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23531:SF1">
        <property type="entry name" value="QUINOLENE RESISTANCE PROTEIN NORA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="124"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="185"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="217"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="243"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="270"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="305"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="337"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily (MFS) profile" evidence="2">
        <location>
            <begin position="1"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="359" mass="36339" checksum="8A711913E524B03D" modified="2008-05-20" version="1">MRSLNLATLLFFTANGITAVVIPPYLRDLGVSNESAIGAIVSTAFFISIVVRPLGGYLGERVGYSAVMRLGAVAAVVGHLMYLIANPAAVQMGRALHGLAIGMFLPMSIAISANEGAAAMASRALAVGVGNVVGPMAGSLLYDLGGGRLAVAVSLALHTANLLAVAGVAGGGGGAKSPPAVERRVYLYMLLLALYASVYMTVSTFTPVRLRDGGLPVAYWGLFSSAAALASLAPRAVLVRAGLVNGATAGAASAVAALGLALAASATDPLIFAAAGVLYGFGQGAVVVTYQVLALAGSRGAGLASAVYTMGWDVGSIAGPLLFGWFVDRYGFPVLEYVPLLLSVNVAVLLINSLRGRNR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9H0</accession>
    <name>APGM_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">2,3-bisphosphoglycerate-independent phosphoglycerate mutase</fullName>
            <shortName evidence="1">BPG-independent PGAM</shortName>
            <shortName evidence="1">Phosphoglyceromutase</shortName>
            <shortName evidence="1">aPGAM</shortName>
            <ecNumber evidence="1">5.4.2.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">apgM</name>
        <name type="ordered locus">Tneu_1474</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2R)-2-phosphoglycerate = (2R)-3-phosphoglycerate</text>
            <dbReference type="Rhea" id="RHEA:15901"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
            <dbReference type="EC" id="5.4.2.12"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the BPG-independent phosphoglycerate mutase family. A-PGAM subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.4.2.12" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350818.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9H0"/>
    <dbReference type="SMR" id="B1Y9H0"/>
    <dbReference type="STRING" id="444157.Tneu_1474"/>
    <dbReference type="GeneID" id="6165789"/>
    <dbReference type="KEGG" id="tne:Tneu_1474"/>
    <dbReference type="eggNOG" id="arCOG01696">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034906_2_0_2"/>
    <dbReference type="OrthoDB" id="52918at2157"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004619">
        <property type="term" value="F:phosphoglycerate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16011">
        <property type="entry name" value="iPGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="entry name" value="Alkaline Phosphatase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2130">
        <property type="entry name" value="Metalloenzyme domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01402_A">
        <property type="entry name" value="ApgM_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023665">
        <property type="entry name" value="ApgAM_prokaryotes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006124">
        <property type="entry name" value="Metalloenzyme"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004456">
        <property type="entry name" value="Pglycerate_mutase_ApgM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042253">
        <property type="entry name" value="Pglycerate_mutase_ApgM_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00306">
        <property type="entry name" value="apgM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003104">
        <property type="entry name" value="PRK04024.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31209">
        <property type="entry name" value="COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31209:SF0">
        <property type="entry name" value="METALLOENZYME DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01676">
        <property type="entry name" value="Metalloenzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10143">
        <property type="entry name" value="PhosphMutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006392">
        <property type="entry name" value="IPGAM_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="Alkaline phosphatase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0324">Glycolysis</keyword>
    <keyword id="KW-0413">Isomerase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000145452" description="2,3-bisphosphoglycerate-independent phosphoglycerate mutase">
        <location>
            <begin position="1"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01402"/>
        </source>
    </evidence>
    <sequence length="411" mass="44251" checksum="5832855FBD9837D7" modified="2008-05-20" version="1">MPSVLWILFDGGGDRPTGGKTPFYVAFKPVIDYFTSLGSCGILDPISPGVRPGSDTAHLALFGYDPYRYYTGRGAFEALGAGVDLRPGDVAFRTNLATVDESGVVVDRRAGRYIAPEEARAVERLMASIGEEVGKAYGVEVLYRSTVEHRGVLVLRGPVSHKVSDTDPHKVGERIHMSEPLDGSKEAALTAQVVNEITRRFSAAAEGLEVNKARKASGRPPINAILLRGGGYMPQIEPVKERYKVRAAAIAGVALIRGVARAVGMDVYTAPGLGGTKDDVFDEAVKLAVELMSRYDVVFLHVKGTDSTAHDGDFRGKVSVIERLDKALSPYVDKIAGNYLVVTSDHATPVSIREHTGEPVPFLLYGPDVVTDDVGKFSELTCWRGALGRLRGIDVMPTLSSYLGLAEKFGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9I9</accession>
    <name>B1Y9I9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DOD-type homing endonuclease domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1494</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350837.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9I9"/>
    <dbReference type="STRING" id="444157.Tneu_1494"/>
    <dbReference type="GeneID" id="6165465"/>
    <dbReference type="KEGG" id="tne:Tneu_1494"/>
    <dbReference type="eggNOG" id="arCOG05594">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1840656_0_0_2"/>
    <dbReference type="OrthoDB" id="27867at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="150" mass="17138" checksum="5CB8A10AE1657E04" modified="2008-05-20" version="1">MRRVEAYLGGMAVGGCVVERPPPYLTSWLKSLGIYRERVELDERYCRYRPIALLEHLYFLKGAFETYGEFFAGDPHGGDVIAIFKVADSRLVESLRLLGIDPLETTDEKGVRKYVVVYRPRDVRRFVKLVKPVVEDPATARLLGLCTQRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="97" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9J8</accession>
    <name>B1Y9J8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="13">DEAD/DEAH box helicase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Tneu_1503</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="9">Belongs to the Lhr helicase family. Lhr-Core subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9J8"/>
    <dbReference type="STRING" id="444157.Tneu_1503"/>
    <dbReference type="KEGG" id="tne:Tneu_1503"/>
    <dbReference type="eggNOG" id="arCOG00557">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002025_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140097">
        <property type="term" value="F:catalytic activity, acting on DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd17922">
        <property type="entry name" value="DEXHc_LHR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18796">
        <property type="entry name" value="SF2_C_LHR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052511">
        <property type="entry name" value="ATP-dep_Helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017170">
        <property type="entry name" value="Lhr-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013701">
        <property type="entry name" value="Lhr-like_DEAD/DEAH_assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045628">
        <property type="entry name" value="Lhr_WH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47962:SF5">
        <property type="entry name" value="ATP-DEPENDENT HELICASE LHR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47962">
        <property type="entry name" value="ATP-DEPENDENT HELICASE LHR-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08494">
        <property type="entry name" value="DEAD_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19306">
        <property type="entry name" value="WHD_Lhr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037307">
        <property type="entry name" value="Lhr-like_helic_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 13" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="11">
        <location>
            <begin position="40"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="12">
        <location>
            <begin position="261"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="10">
        <location>
            <begin position="909"/>
            <end position="936"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00093467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB40427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="937" mass="105948" checksum="C0596BE2624608F6" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9P5</accession>
    <name>B1Y9P5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Protein Tneu_0009</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0009</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349389.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9P5"/>
    <dbReference type="STRING" id="444157.Tneu_0009"/>
    <dbReference type="GeneID" id="6165019"/>
    <dbReference type="KEGG" id="tne:Tneu_0009"/>
    <dbReference type="eggNOG" id="arCOG01336">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_095686_1_1_2"/>
    <dbReference type="OrthoDB" id="25187at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.700.20">
        <property type="entry name" value="Hypothetical protein ph0010, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.150">
        <property type="entry name" value="Hypothetical protein ph0010, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00645">
        <property type="entry name" value="AMMECR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023473">
        <property type="entry name" value="AMMECR1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036071">
        <property type="entry name" value="AMMECR1_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002733">
        <property type="entry name" value="AMMECR1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027485">
        <property type="entry name" value="AMMECR1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027623">
        <property type="entry name" value="AmmeMemoSam_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023472">
        <property type="entry name" value="Uncharacterised_MJ0810"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR04335">
        <property type="entry name" value="AmmeMemoSam_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00296">
        <property type="entry name" value="TIGR00296 family protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13016:SF0">
        <property type="entry name" value="AMME SYNDROME CANDIDATE GENE 1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13016">
        <property type="entry name" value="AMMECR1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01871">
        <property type="entry name" value="AMMECR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143447">
        <property type="entry name" value="AMMECR1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51112">
        <property type="entry name" value="AMMECR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMMECR1" evidence="2">
        <location>
            <begin position="12"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB38967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="220" mass="24692" checksum="7179A61DB8A6C5BB" modified="2008-05-20" version="1">MAGALFKPYTIEEGAYLVKLARRAVEIFLKTGRVVEPEGPPARLLLDNYGVFTTIETAGERLELRGCIGYPEGYRNVAYATIHSAIGACCQDLRFPALRLEELPNVVFEVSVLSPLSLVTEDPRKYPEVVQVGRHGLVVRRGPYSGLLLPQVAVEECWDPVEFLIHTCVKAWLPGDCWLDKRTRLYVYEAQIFRETAPGGDVQERDLKAEAARCSPKTRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Q4</accession>
    <name>B1Y9Q4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0018</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349398.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Q4"/>
    <dbReference type="STRING" id="444157.Tneu_0018"/>
    <dbReference type="GeneID" id="6164813"/>
    <dbReference type="KEGG" id="tne:Tneu_0018"/>
    <dbReference type="eggNOG" id="arCOG05457">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1674052_0_0_2"/>
    <dbReference type="OrthoDB" id="29207at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="112"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="157" mass="16851" checksum="4A9DB2AF75526CF1" modified="2008-05-20" version="1">MWLSILAAALAVFVVFVNPFARPLYATAPVDVGNFEITAGGEVDRFLQIPPALAAAVAVALLAAAVYVEFFAKLRVGGLPKVLALLALAYAVPLPYLYLVKFSDVVVVVSNFAMYLSLPMFGLALLVAVTENLLVPRRRARVIADLSVTEEKTERGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9R2</accession>
    <name>B1Y9R2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Type II secretion system protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0026</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349406.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9R2"/>
    <dbReference type="STRING" id="444157.Tneu_0026"/>
    <dbReference type="GeneID" id="6165110"/>
    <dbReference type="KEGG" id="tne:Tneu_0026"/>
    <dbReference type="eggNOG" id="arCOG01808">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_538225_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="198"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="257"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="280"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="420"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="452"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="486"/>
            <end position="507"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="509" mass="55917" checksum="B8487318BBC26289" modified="2008-05-20" version="1">MLVFSPLIKWQLRGIEKTDLDPLKFRGTARLFNLLGLGVLSAGGVFTALGALPLGPLFLGVGALLFFFPKLVVSLRAGSIRELLTTEMVFFTALVQMAFATKAHLNLVIERMMRYRELPGVRTLAIAAWNNAKMIGMEPMDAMKRAVEKLAPQKLVYRFNSLYTSLRIGEDIVAKLSLYMDMDIVEFSTAMQRRMDRLTSLISSLVVGLAMLSVTAVVIGRGNPAMLVLMGGLLPAILGVVMALFINVPLMKMDFRIPPLLFGIAAAVAMIVLGFTPMSFYAPLIAFGIALAGWVITRERVDAKAFERGFMDFVYTVFDELKRAPSVYRAVENAITFGDYGPFNSKAAALLQTMKVGDSRLEDVALKGMQPVMSVILRMLLDIYRLGTLPRSTIDQLQNFVVKLFEYRSEIGRTLNITRFLALAGAAMVAFVNTSMIRLTEAMSKISGGAQLGGIGMSMLYLALAIMSVGYYFLFTKISFSTRGGLLYLALLYLAVFVASFAVGVFLKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="91" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9W2</accession>
    <name>B1Y9W2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">Orotate phosphoribosyltransferase</fullName>
            <shortName evidence="6">OPRT</shortName>
            <shortName evidence="6">OPRTase</shortName>
            <ecNumber evidence="2 6">2.4.2.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">pyrE</name>
        <name evidence="8" type="ordered locus">Tneu_1589</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>orotidine 5'-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate</text>
            <dbReference type="Rhea" id="RHEA:10380"/>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57538"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 6">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.10" evidence="2 6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350931.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9W2"/>
    <dbReference type="STRING" id="444157.Tneu_1589"/>
    <dbReference type="GeneID" id="6166044"/>
    <dbReference type="KEGG" id="tne:Tneu_1589"/>
    <dbReference type="eggNOG" id="arCOG00029">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074878_2_0_2"/>
    <dbReference type="OrthoDB" id="9089at2157"/>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004588">
        <property type="term" value="F:orotate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019856">
        <property type="term" value="P:pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01208">
        <property type="entry name" value="PyrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023031">
        <property type="entry name" value="OPRT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004467">
        <property type="entry name" value="Or_phspho_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRTase_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00336">
        <property type="entry name" value="pyrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19278">
        <property type="entry name" value="OROTATE PHOSPHORIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19278:SF9">
        <property type="entry name" value="URIDINE 5'-MONOPHOSPHATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="PRTase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 8" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 6" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phosphoribosyltransferase" evidence="7">
        <location>
            <begin position="54"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="6">
        <location>
            <begin position="111"/>
            <end position="119"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>orotate</name>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>orotate</name>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="193" mass="20736" checksum="AA89B1D455FE83B4" modified="2008-05-20" version="1">MIARLVELGVVKFGLFKLSSGLESPYYVDLRLVLGDPQLLKWAVERYRAVVERLDFDIVAGVATGGIPYASILGFLLGKPVSYVRPEAKGHGLGRQIEGAEVRGRRVVVVDDVLTTGKSVVGAVNALKNAGASVAGVVVFLDREQCGAGHVSAATGVPVYSVYKMGELLEALKPYIGEGHYRAVLEYLSSWRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9W6</accession>
    <name>B1Y9W6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Xylose isomerase domain protein TIM barrel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1593</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AP endonuclease 2 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350935.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9W6"/>
    <dbReference type="STRING" id="444157.Tneu_1593"/>
    <dbReference type="GeneID" id="6166106"/>
    <dbReference type="KEGG" id="tne:Tneu_1593"/>
    <dbReference type="eggNOG" id="arCOG01894">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068832_0_0_2"/>
    <dbReference type="OrthoDB" id="33250at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003906">
        <property type="term" value="F:DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00019">
        <property type="entry name" value="AP2Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.150:FF:000017">
        <property type="entry name" value="Endonuclease IV related protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.150">
        <property type="entry name" value="Divalent-metal-dependent TIM barrel enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001719">
        <property type="entry name" value="AP_endonuc_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018246">
        <property type="entry name" value="AP_endonuc_F2_Zn_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21445:SF0">
        <property type="entry name" value="APURINIC-APYRIMIDINIC ENDONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21445">
        <property type="entry name" value="ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00518">
        <property type="entry name" value="AP2Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="Xylose isomerase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00729">
        <property type="entry name" value="AP_NUCLEASE_F2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Xylose isomerase-like TIM barrel" evidence="8">
        <location>
            <begin position="25"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="276" mass="31297" checksum="46F7354C9D2619F9" modified="2008-05-20" version="1">MAKVYLGPAGIPQYVVKAKSTLDAVKAVRELGLNAMEVEFVQGVRMSRELAKQVGKAAQDYDVKLSVHAPYFINLCSEEADKVEKSRQRLVDSLDRAYHMGAWVVVVHAAYYGKLGPQRCFEKVKEELEKAYRESGIGSGVYIGVEITARTNQFGSVEEAFKLAKELHYVTPVVDWGHLYARNNGVINYGEVLDLWAREFGDRHMHTHFTSVRYRNGKYVDEHEPIERNMPPFEPLAEELKRRDLAITLICESPLLEKDALLMKEILEKHGVSLAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA04</accession>
    <name>B1YA04_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1631</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350973.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA04"/>
    <dbReference type="STRING" id="444157.Tneu_1631"/>
    <dbReference type="GeneID" id="6165904"/>
    <dbReference type="KEGG" id="tne:Tneu_1631"/>
    <dbReference type="eggNOG" id="arCOG00836">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1340792_0_0_2"/>
    <dbReference type="OrthoDB" id="25982at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04301">
        <property type="entry name" value="NAT_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="Acyl-CoA N-acyltransferases (Nat)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="175" mass="19138" checksum="3E8AC35433AB7B77" modified="2008-05-20" version="1">MEFVADREAALRLVELYYGGPPKYAKAVLERWPSAGAVVVYIGSEAAGAEVFYAVRLAEAACVHYYVVVAPKFRRRGVATSLVRYVEGRCGTPINLATSTAENAAAAKLFRKLGYSAYFWGEMPTGIREVLLKATCGYDDDVLYVKGGRPADVALPTAEVEALWRETCLKPYLGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA15</accession>
    <name>B1YA15_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Proteasome assembly chaperone family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0031</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349411.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA15"/>
    <dbReference type="STRING" id="444157.Tneu_0031"/>
    <dbReference type="GeneID" id="6165016"/>
    <dbReference type="KEGG" id="tne:Tneu_0031"/>
    <dbReference type="eggNOG" id="arCOG00347">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075000_2_0_2"/>
    <dbReference type="OrthoDB" id="35908at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10900">
        <property type="entry name" value="PAC-like subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019151">
        <property type="entry name" value="Proteasome_assmbl_chaperone_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038389">
        <property type="entry name" value="PSMG2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35610">
        <property type="entry name" value="3-ISOPROPYLMALATE DEHYDRATASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35610:SF3">
        <property type="entry name" value="PROTEASOME ASSEMBLY CHAPERONE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09754">
        <property type="entry name" value="PAC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159659">
        <property type="entry name" value="Cgl1923-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="204"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="239" mass="26255" checksum="2CA1D9B149AC44B7" modified="2008-05-20" version="1">MKIEFKVFKPVENYEVFITGFAGIGIVGHLATKYIARNCEVVGVVRYRGEPPVVSIEGGRLLLQNEIFSCGGGVVGVVNNYGIHEAATYDYARALAHWVAANGFKTAVLFGGLDGRLRKGDDLLRVVYTSAYGRAGLPTGGAKVLEQGLQIVGPLALLTSFFEELDFPALVVLPYADVTRPADPYAASIAVDFFSKLFGISIDTSGLRQMAEELERELEEVRRRLEEQSKREETSRLYI</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA45</accession>
    <name>SYC_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cysteine--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Cysteinyl-tRNA synthetase</fullName>
            <shortName evidence="1">CysRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">cysS</name>
        <name type="ordered locus">Tneu_0061</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>tRNA(Cys) + L-cysteine + ATP = L-cysteinyl-tRNA(Cys) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:17773"/>
            <dbReference type="Rhea" id="RHEA-COMP:9661"/>
            <dbReference type="Rhea" id="RHEA-COMP:9679"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78517"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.16"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.16" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349440.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA45"/>
    <dbReference type="SMR" id="B1YA45"/>
    <dbReference type="STRING" id="444157.Tneu_0061"/>
    <dbReference type="GeneID" id="6164407"/>
    <dbReference type="KEGG" id="tne:Tneu_0061"/>
    <dbReference type="eggNOG" id="arCOG00486">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013528_0_1_2"/>
    <dbReference type="OrthoDB" id="9445at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004817">
        <property type="term" value="F:cysteine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006423">
        <property type="term" value="P:cysteinyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00672">
        <property type="entry name" value="CysRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.620:FF:000130">
        <property type="entry name" value="Cysteine--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1910">
        <property type="entry name" value="Cysteine-tRNA ligase, C-terminal anti-codon recognition domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00041">
        <property type="entry name" value="Cys_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015803">
        <property type="entry name" value="Cys-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015273">
        <property type="entry name" value="Cys-tRNA-synt_Ia_DALR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024909">
        <property type="entry name" value="Cys-tRNA/MSH_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032678">
        <property type="entry name" value="tRNA-synt_1_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00435">
        <property type="entry name" value="cysS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10890:SF3">
        <property type="entry name" value="CYSTEINE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10890">
        <property type="entry name" value="CYSTEINYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09190">
        <property type="entry name" value="DALR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01406">
        <property type="entry name" value="tRNA-synt_1e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00983">
        <property type="entry name" value="TRNASYNTHCYS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00840">
        <property type="entry name" value="DALR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000090880" description="Cysteine--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region">
        <location>
            <begin position="29"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region">
        <location>
            <begin position="271"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="238"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="242"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="274"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00041"/>
        </source>
    </evidence>
    <sequence length="474" mass="55202" checksum="656CA20D3E223655" modified="2008-05-20" version="1">MRIYNTATRQVEEFTTYVPRLARGYVCGITPYDHMHVGHGRVYVFFDIFRRYLERLGYEVRLVINFTDIDDKIVNKAREEFGHEAYKRWREVPERYIAEYFEMTRRLYIKPAYAYPKVTENVEDMVKWISTLVEKGYAYVAPDGSVYFEVAKVPNYGVLSRQKIEELIAGARVEPEPGKRNPLDFALWKSWTPGEPWWNSPWCPGRPGWHLECVVMSTKHLGAPFDFHGGGADLIFPHHENEIAIARAYFGVDNFARYWIHVGYLTVRGEKMSKSLGNIITLREVLSKHSGEALRLAYAMSHYRKPMEFTYELLQQAEDMAKTLYTAYDELSQALRDAGEKDQEPIAQEALKYAGAFYGALDDDMSTPEAVQQLYGMARYIISTVLHRVEKISRETALAVLNKYVEMADVLGVLERRQIPKELEEAVKALVETRARLRQERQYQLADYIRQRLAELGVELHDFGPRTYYTYRRA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="92" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA64</accession>
    <name>TRUB_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Probable tRNA pseudouridine synthase B</fullName>
            <ecNumber evidence="1">5.4.99.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA pseudouridine(55) synthase</fullName>
            <shortName evidence="1">Psi55 synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA pseudouridylate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA-uridine isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">truB</name>
        <name type="ordered locus">Tneu_0080</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>uridine(55) in tRNA = pseudouridine(55) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:42532"/>
            <dbReference type="Rhea" id="RHEA-COMP:10101"/>
            <dbReference type="Rhea" id="RHEA-COMP:10102"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="EC" id="5.4.99.25"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.25" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349459.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA64"/>
    <dbReference type="SMR" id="B1YA64"/>
    <dbReference type="STRING" id="444157.Tneu_0080"/>
    <dbReference type="GeneID" id="6164371"/>
    <dbReference type="KEGG" id="tne:Tneu_0080"/>
    <dbReference type="eggNOG" id="arCOG00987">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032087_3_0_2"/>
    <dbReference type="OrthoDB" id="35866at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0160148">
        <property type="term" value="F:tRNA pseudouridine(55) synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000495">
        <property type="term" value="P:box H/ACA sno(s)RNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990481">
        <property type="term" value="P:mRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031118">
        <property type="term" value="P:rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031120">
        <property type="term" value="P:snRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031119">
        <property type="term" value="P:tRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02572">
        <property type="entry name" value="PseudoU_synth_hDyskerin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd21148">
        <property type="entry name" value="PUA_Cbf5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.2350.10:FF:000001">
        <property type="entry name" value="H/ACA ribonucleoprotein complex subunit CBF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2350.10">
        <property type="entry name" value="Pseudouridine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.10">
        <property type="entry name" value="PUA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01081">
        <property type="entry name" value="TruB_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012960">
        <property type="entry name" value="Dyskerin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002501">
        <property type="entry name" value="PsdUridine_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002478">
        <property type="entry name" value="PUA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036974">
        <property type="entry name" value="PUA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004802">
        <property type="entry name" value="tRNA_PsdUridine_synth_B_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026326">
        <property type="entry name" value="TruB_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032819">
        <property type="entry name" value="TruB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004521">
        <property type="entry name" value="Uncharacterised_CHP00451"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00425">
        <property type="entry name" value="CBF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003280">
        <property type="entry name" value="PRK04270.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00451">
        <property type="entry name" value="unchar_dom_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23127">
        <property type="entry name" value="CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23127:SF0">
        <property type="entry name" value="H_ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT DKC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08068">
        <property type="entry name" value="DKCLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01472">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16198">
        <property type="entry name" value="TruB_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01509">
        <property type="entry name" value="TruB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01136">
        <property type="entry name" value="DKCLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00359">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="Pseudouridine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="PUA domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50890">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0413">Isomerase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <feature type="chain" id="PRO_1000136825" description="Probable tRNA pseudouridine synthase B">
        <location>
            <begin position="1"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="domain" description="PUA" evidence="1">
        <location>
            <begin position="238"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01081"/>
        </source>
    </evidence>
    <sequence length="331" mass="36868" checksum="93F3B99F0E619A3E" modified="2008-05-20" version="1">MRCGSREVFVKIQEATNPEWGKPPSRRSAEEHIKYSLVLLDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLPIAVAEGTKVLLALSRSDKVYVAVAKFHGDVDEGKLRAVLGEFQGIIYQRPPLRSAVKRQLRTRQVYSIELLELDGRYAVIKMHVEAGTYARKLIHDIGEVLGVGANMRELRRVAVSCYTEEETVTLQDVADAYYIWRKYGDDTYLRRVLLPIEEIARHLPKIWVRDSAVDALCNGAPLAAPGVAKFEAPFSRGELVAYFTLKGELIGVGRALVDSEEVKKMEKGLVARTDRVVMKRGTYPPLWKRRGEGAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA67</accession>
    <name>B1YA67_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0083</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349462.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA67"/>
    <dbReference type="STRING" id="444157.Tneu_0083"/>
    <dbReference type="GeneID" id="6164579"/>
    <dbReference type="KEGG" id="tne:Tneu_0083"/>
    <dbReference type="eggNOG" id="arCOG05467">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1709239_0_0_2"/>
    <dbReference type="OrthoDB" id="26025at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="153" mass="17910" checksum="27149B5A8BA3A550" modified="2008-05-20" version="1">MATLPVEYLRTTRLFRERVGDVEIISFEVPVHKYFSRNEIPYLATALEADPRKLENMLSDMRYGRVAVEKLWAYRLDGDLIRESKKVLLPDLAANREVDGEVDELEDAKILKIHVAGVRELVRIFVRRQQGYREVVVYRKPPHPALIRYVAFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA95</accession>
    <name>B1YA95_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0111</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA95"/>
    <dbReference type="STRING" id="444157.Tneu_0111"/>
    <dbReference type="KEGG" id="tne:Tneu_0111"/>
    <dbReference type="eggNOG" id="arCOG09840">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1902019_0_0_2"/>
    <dbReference type="OrthoDB" id="374171at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="133" mass="13912" checksum="39FFFE698C49A89A" modified="2008-05-20" version="1">MDSLGFLVVLVVVLVIAFVLGFWLLSNFLVAKEEFSRVYPIAAYVDAGGGFLLCVYNAGPHDFYGRWLVSTKSGKSVEVSLAVPVGRTVAVRGSLGESFTPGTSPALILVTGGGRGYVVNPIVVPDISSVSCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAA8</accession>
    <name>B1YAA8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SUF system FeS cluster assembly SufBD core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAA8"/>
    <dbReference type="STRING" id="444157.Tneu_0125"/>
    <dbReference type="KEGG" id="tne:Tneu_0125"/>
    <dbReference type="eggNOG" id="arCOG01715">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_736928_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055346">
        <property type="entry name" value="Fe-S_cluster_assembly_SufBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000825">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037284">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43575">
        <property type="entry name" value="PROTEIN ABCI7, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43575:SF1">
        <property type="entry name" value="PROTEIN ABCI7, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01458">
        <property type="entry name" value="SUFBD_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101960">
        <property type="entry name" value="Stabilizer of iron transporter SufD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SUF system FeS cluster assembly SufBD core" evidence="1">
        <location>
            <begin position="125"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="372" mass="38977" checksum="A0A09CE2453A84FC" modified="2008-05-20" version="1">MSMDLSTARSRGLELAGKLPWQEVADSPTIRYYTDWSRFEGFKPSAGTRPRPASPAPCEVVVSGGYLAGRGPCGGVEVDAAGEVFRRLDIGSRILALHASALSEAVRVRVAGRVEPLVVKLVADSPGSHVASHVILEVEESASGSVVVYVEGNVGTMHTAVVEGEVRGAVEYVLVSRGGGPQYVHSALAVGSQVYARPLVLGGVMNAVREEYVVAAGASAEVVGMELGYGESRIDHVVSVVNDAPKGRGFARLYAVAADRSFVAQRAVGRITPRGAGSESAVEGVVYIAGEGAVANSQPVILVETGDVEGARHSAADAALDEEKEFFLRSRGVRREHIPRLIMASLVDQYLSSLSEGARGFAEAVVRSAGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAC5</accession>
    <name>B1YAC5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">CBU-0592-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1652</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350993.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAC5"/>
    <dbReference type="STRING" id="444157.Tneu_1652"/>
    <dbReference type="GeneID" id="6165473"/>
    <dbReference type="KEGG" id="tne:Tneu_1652"/>
    <dbReference type="eggNOG" id="arCOG05661">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_166571_1_0_2"/>
    <dbReference type="OrthoDB" id="28328at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058058">
        <property type="entry name" value="CBU_0592-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26604">
        <property type="entry name" value="CBU_0592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="domain" description="CBU-0592-like" evidence="2">
        <location>
            <begin position="3"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF26604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="80" mass="8429" checksum="3F73747BC7D9EB59" modified="2008-05-20" version="1">MMQAVGLAGLLFIVAAWAVNIMRRSPPPPLDLTVLYFLGSVALTVYAAASGDVVFTVLNGVSSVLSLVNIVRALRIKSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAD1</accession>
    <name>B1YAD1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Protein translocase subunit SecE</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Protein transport protein Sec61 gamma subunit homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">secE</name>
        <name evidence="9" type="ordered locus">Tneu_1658</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Component of the Sec protein translocase complex. Heterotrimer consisting of SecY (alpha), SecG (beta) and SecE (gamma) subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. May interact with SecDF, and other proteins may be involved.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the SecE/SEC61-gamma family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350999.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAD1"/>
    <dbReference type="STRING" id="444157.Tneu_1658"/>
    <dbReference type="GeneID" id="6166304"/>
    <dbReference type="KEGG" id="tne:Tneu_1658"/>
    <dbReference type="eggNOG" id="arCOG02204">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2327404_0_0_2"/>
    <dbReference type="OrthoDB" id="27023at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.820">
        <property type="entry name" value="Preprotein translocase SecE subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00422">
        <property type="entry name" value="SecE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023391">
        <property type="entry name" value="Prot_translocase_SecE_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001901">
        <property type="entry name" value="Translocase_SecE/Sec61-g"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 8" id="KW-0653">Protein transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0811">Translocation</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="36"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="78"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00422"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="99" mass="10799" checksum="04CF55170D4438A9" modified="2008-05-20" version="1">MASLREKLEQILRDVRWVVSTASKPDDDEFKLVSKFLLLLAFVAGAFQLVFHLAGVYISGVVYNQPVPTLGEPAREAAAVLASIAVIVVGLIYLTAKLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAH2</accession>
    <name>B1YAH2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1701</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351040.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAH2"/>
    <dbReference type="GeneID" id="6164817"/>
    <dbReference type="KEGG" id="tne:Tneu_1701"/>
    <dbReference type="eggNOG" id="arCOG09787">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_838428_0_0_2"/>
    <dbReference type="OrthoDB" id="28401at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="341" mass="37808" checksum="89562352BDDAC235" modified="2008-05-20" version="1">MATRLLILLLLAAAVLTAVEVYHGQVVEFGNLTVVYSVYELPAVGVELNGCVYYVVRGHDPKVVDMWSRTQRELAEFYNFTERWRREFQYGTWPIIAEELRSANYSGYLDFYYCCGPLVNKSIAERLSKSSRWVNRTVSLADAVSKTLKAAGLDVGGVYINVWQGFISVEAFTDPRRGLSQYAKVRGDLDSVFKAYKDKLLVIINIKEAPAPSPYVVGLDPESVRKKLARLKEAIFQAYREVGVDVNPIDVVTGIGAREGLYLVLIAPPNETHLLRALTERSVKELGICPNGSVVIFFKTGALKPVGVDIPWRLAALEAAAMATAISAAVYVVKKKLVKPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAI9</accession>
    <name>B1YAI9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RNA methylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1720</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351057.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAI9"/>
    <dbReference type="STRING" id="444157.Tneu_1720"/>
    <dbReference type="GeneID" id="6165507"/>
    <dbReference type="KEGG" id="tne:Tneu_1720"/>
    <dbReference type="eggNOG" id="arCOG00048">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032119_0_0_2"/>
    <dbReference type="OrthoDB" id="7080at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016423">
        <property type="term" value="F:tRNA (guanine) methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030488">
        <property type="term" value="P:tRNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd11715">
        <property type="entry name" value="THUMP_AdoMetMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.150:FF:000913">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2130.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000241">
        <property type="entry name" value="RlmKL-like_Mtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004114">
        <property type="entry name" value="THUMP_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14911">
        <property type="entry name" value="THUMP DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14911:SF13">
        <property type="entry name" value="TRNA (GUANINE(6)-N2)-METHYLTRANSFERASE THUMP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02926">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01170">
        <property type="entry name" value="UPF0020"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00981">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143437">
        <property type="entry name" value="THUMP domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51165">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="THUMP" evidence="5">
        <location>
            <begin position="47"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="333" mass="37301" checksum="B5E8374EC9B01DCA" modified="2008-05-20" version="1">MHYLITTVPGLEDIAAEELAERLHARRAKAIYMTGRVAAEIDAPPAHLYKLKTAERFGILLGEGTAQTLQDVVALAATHLPKAERYLTRNTTAGIRCERVGQHPFTSRDVEREVGRWLKERGYVISLVDPDVEINVDVVHNYVTVWITVAKKSLKDRPWRAYEHYASLNPIIAHAMARLAKPAPGETICDLTCGGGTIAAEAAEYAPWARYICVDISLKHIKGAALNTARYPQVDLLWFDSTKLHRAVRPICDKYIFNPPYGFRIPGKIGRLYRLLGKAMRKLTRHCATYVTITPRHKTFTSQVGGEIIMRRVIYQGGLYSSIIVGRICPTSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAM5</accession>
    <name>B1YAM5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 12">Adenylosuccinate lyase</fullName>
            <ecNumber evidence="5 12">4.3.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Tneu_0147</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes two reactions in de novo purine nucleotide biosynthesis. Catalyzes the breakdown of 5-aminoimidazole- (N-succinylocarboxamide) ribotide (SAICAR or 2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate) to 5-aminoimidazole-4-carboxamide ribotide (AICAR or 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide) and fumarate, and of adenylosuccinate (ADS or N(6)-(1,2-dicarboxyethyl)-AMP) to adenosine monophosphate (AMP) and fumarate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + fumarate</text>
            <dbReference type="Rhea" id="RHEA:23920"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:58443"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="EC" id="4.3.2.2"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="9">
            <dbReference type="Rhea" id="RHEA:23921"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>N(6)-(1,2-dicarboxyethyl)-AMP = fumarate + AMP</text>
            <dbReference type="Rhea" id="RHEA:16853"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:57567"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="4.3.2.2"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="11">
            <dbReference type="Rhea" id="RHEA:16854"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 2/2.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotetramer. Residues from neighboring subunits contribute catalytic and substrate-binding residues to each active site.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.2" evidence="5 12"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349525.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAM5"/>
    <dbReference type="STRING" id="444157.Tneu_0147"/>
    <dbReference type="GeneID" id="6164747"/>
    <dbReference type="KEGG" id="tne:Tneu_0147"/>
    <dbReference type="eggNOG" id="arCOG01747">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030949_0_1_2"/>
    <dbReference type="OrthoDB" id="26319at2157"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00132"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00075">
        <property type="reaction ID" value="UER00336"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070626">
        <property type="term" value="F:(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004018">
        <property type="term" value="F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044208">
        <property type="term" value="P:'de novo' AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.200.10:FF:000008">
        <property type="entry name" value="Adenylosuccinate lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.40.30">
        <property type="entry name" value="Fumarase/aspartase (C-terminal domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.200.10">
        <property type="entry name" value="Fumarase/aspartase (Central domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="entry name" value="Fumarase/aspartase (N-terminal domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055169">
        <property type="entry name" value="ASLyase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004769">
        <property type="entry name" value="Pur_lyase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00928">
        <property type="entry name" value="purB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43172">
        <property type="entry name" value="ADENYLOSUCCINATE LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43172:SF1">
        <property type="entry name" value="ADENYLOSUCCINATE LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22304">
        <property type="entry name" value="ASLyase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00145">
        <property type="entry name" value="ARGSUCLYASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="L-aspartase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 15" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fumarate lyase N-terminal" evidence="13">
        <location>
            <begin position="83"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="Adenylosuccinate lyase C-terminal" evidence="14">
        <location>
            <begin position="337"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00017058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00049115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="NCBIfam" id="TIGR00928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF22304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB39104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="403" mass="45400" checksum="FBFF454FC88BD610" modified="2008-05-20" version="1">MISPFDWRYGSGEVRALFTPQAFVDAYVEVEKALACALEELGVAERGCCQRLEGVKVAAEEVYRLEREVGHDILSLVILLEQRSGCRYVHYGATSNDVIDTAWALLIRRALSIIKKKINAAGEELARLARRYKGLVMVGRTHGQWAEPITLGFKFANYYYELYIACRALAQAEELIRAKVGGAVGTMAAWGELGPEVRRRVAERLGLPYHVITTQVAPRESYAALASALAVLAAVFERLATEIRELSRPEIGEVVERGGGSSAMPHKANPTASERVVSLARYVRALVNVALENVALWHERDLTNSANERVWIPEAILAVDEILDSSVRVLRTVEINEARIEENLQKALPYILTEFHMIRMVREGMPRYEAYRRAKEVRDITYDFERWPVEKLIEEALSLELCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAN9</accession>
    <name>B1YAN9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ZPR1-like zinc finger protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0161</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ZPR1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349539.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAN9"/>
    <dbReference type="STRING" id="444157.Tneu_0161"/>
    <dbReference type="GeneID" id="6165035"/>
    <dbReference type="KEGG" id="tne:Tneu_0161"/>
    <dbReference type="eggNOG" id="arCOG04265">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_107446_0_0_2"/>
    <dbReference type="OrthoDB" id="14924at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1040">
        <property type="entry name" value="ZPR1, A/B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.25.420">
        <property type="entry name" value="ZPR1, zinc finger domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004457">
        <property type="entry name" value="Znf_ZPR1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040141">
        <property type="entry name" value="ZPR1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042451">
        <property type="entry name" value="ZPR1_A/B_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056180">
        <property type="entry name" value="ZPR1_jr_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042452">
        <property type="entry name" value="ZPR1_Znf1/2"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00310">
        <property type="entry name" value="ZPR1_znf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10876">
        <property type="entry name" value="ZINC FINGER PROTEIN ZPR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10876:SF0">
        <property type="entry name" value="ZINC FINGER PROTEIN ZPR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22794">
        <property type="entry name" value="jr-ZPR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03367">
        <property type="entry name" value="Zn_ribbon_ZPR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00709">
        <property type="entry name" value="Zpr1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="3" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Zinc finger ZPR1-type" evidence="5">
        <location>
            <begin position="9"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="174" mass="19609" checksum="4821277DF152C3A5" modified="2008-05-20" version="1">MSVVYSGEVTCPVCGAKTFRYVELLYETPFFGNVLIQSGYCSSCGYRYFDVDYAEVGRPTRVVFKPRDGLDVAKSLLIRSKTGTVYSPDLGFTLEPGTHGEPVITTVEGFMYKVVDYAERLKTLEPENAARVDQFIETVYRKVEEGGFTLIVEDPFGKSFIQPYRPETVVVEYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAQ1</accession>
    <name>B1YAQ1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Aldehyde ferredoxin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0174</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AOR/FOR family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349551.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAQ1"/>
    <dbReference type="STRING" id="444157.Tneu_0174"/>
    <dbReference type="GeneID" id="6164958"/>
    <dbReference type="KEGG" id="tne:Tneu_0174"/>
    <dbReference type="eggNOG" id="arCOG05072">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_440510_0_0_2"/>
    <dbReference type="OrthoDB" id="84495at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016625">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.569.10">
        <property type="entry name" value="Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.9.10">
        <property type="entry name" value="Aldehyde ferredoxin oxidoreductase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013984">
        <property type="entry name" value="Ald_Fedxn_OxRdtase_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013983">
        <property type="entry name" value="Ald_Fedxn_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036503">
        <property type="entry name" value="Ald_Fedxn_OxRdtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001203">
        <property type="entry name" value="OxRdtase_Ald_Fedxn_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036021">
        <property type="entry name" value="Tungsten_al_ferr_oxy-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051919">
        <property type="entry name" value="W-dependent_AOR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30038">
        <property type="entry name" value="ALDEHYDE FERREDOXIN OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30038:SF7">
        <property type="entry name" value="TUNGSTEN-CONTAINING GLYCERALDEHYDE-3-PHOSPHATE:FERREDOXIN OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01314">
        <property type="entry name" value="AFOR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02730">
        <property type="entry name" value="AFOR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00790">
        <property type="entry name" value="AFOR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48310">
        <property type="entry name" value="Aldehyde ferredoxin oxidoreductase, C-terminal domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56228">
        <property type="entry name" value="Aldehyde ferredoxin oxidoreductase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldehyde ferredoxin oxidoreductase N-terminal" evidence="7">
        <location>
            <begin position="1"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="618" mass="69249" checksum="32490FAB848688F0" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAS8</accession>
    <name>B1YAS8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Methyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0202</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349578.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAS8"/>
    <dbReference type="STRING" id="444157.Tneu_0202"/>
    <dbReference type="GeneID" id="6164631"/>
    <dbReference type="KEGG" id="tne:Tneu_0202"/>
    <dbReference type="eggNOG" id="arCOG01639">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1700370_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016279">
        <property type="term" value="F:protein-lysine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026170">
        <property type="entry name" value="FAM173A/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13610">
        <property type="entry name" value="METHYLTRANSFERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13610:SF11">
        <property type="entry name" value="METHYLTRANSFERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase" evidence="4">
        <location>
            <begin position="38"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="148" mass="17054" checksum="9256B6F48328726A" modified="2008-05-20" version="1">MLHFVWPYLARRGGAYSTSSAEAARWAFARVGIAGRRVYDLGCGYGRVLALARRMGAEVVGVEIDPVRWLICLLRCRCRVLLADMFKVDVSDADVVYIFQWPSVNARLSEKFRRELRRGAYVVSYMWEVPGLELVEQSPELRVYIYRV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAT5</accession>
    <name>AATB_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">A-type ATP synthase subunit B</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">atpB</name>
        <name type="ordered locus">Tneu_0209</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Component of the A-type ATP synthase that produces ATP from ADP in the presence of a proton gradient across the membrane. The B chain is a regulatory subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Has multiple subunits with at least A(3), B(3), C, D, E, F, H, I and proteolipid K(x).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349585.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAT5"/>
    <dbReference type="SMR" id="B1YAT5"/>
    <dbReference type="STRING" id="444157.Tneu_0209"/>
    <dbReference type="GeneID" id="6165070"/>
    <dbReference type="KEGG" id="tne:Tneu_0209"/>
    <dbReference type="eggNOG" id="arCOG00865">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022916_0_0_2"/>
    <dbReference type="OrthoDB" id="32941at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042777">
        <property type="term" value="P:proton motive force-driven plasma membrane ATP synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18112">
        <property type="entry name" value="ATP-synt_V_A-type_beta_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18118">
        <property type="entry name" value="ATP-synt_V_A-type_beta_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01135">
        <property type="entry name" value="V_A-ATPase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00310">
        <property type="entry name" value="ATP_synth_B_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055190">
        <property type="entry name" value="ATP-synt_VA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004100">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022879">
        <property type="entry name" value="V-ATPase_su_B/beta"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003235">
        <property type="entry name" value="PRK04196.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43389">
        <property type="entry name" value="V-TYPE PROTON ATPASE SUBUNIT B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43389:SF4">
        <property type="entry name" value="V-TYPE PROTON ATPASE SUBUNIT B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02874">
        <property type="entry name" value="ATP-synt_ab_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22919">
        <property type="entry name" value="ATP-synt_VA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0066">ATP synthesis</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0375">Hydrogen ion transport</keyword>
    <keyword id="KW-0406">Ion transport</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0813">Transport</keyword>
    <feature type="chain" id="PRO_1000115667" description="A-type ATP synthase subunit B">
        <location>
            <begin position="1"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="467" mass="52111" checksum="4EB33D1AF510EE57" modified="2008-05-20" version="1">MLTPVVSYSTVKEVKGPLLVIERTRGVAYGEIGEVVGPDGEPRRVQVIEVGTDYAVAQVLGGTLGLPAKGSTVRFYGKTLKLPVSEELIGRILDGKGQPRDHMPLPPPEDFRDVNGEPLNPYSREYPEEPIETGISAIDGLYTLVRGQKLPIFSGTGLPHNLMAAQVVRQSTVRGSEEGFAVVFVGVGIKTEEAIFFMDEFRKTGALRRAVAVLNLASDPVAERILAPRVGLTIAEYLAWQLGYHVLVVITDMTNYCEGLRELSSGRGELPGRRGYPGYMYTDLATIYERAGKARGKKGSVTQFPILTMPHDDITHPIPDLTGYITEGQLVLSRSMWGKGIYPPFDVIMSLSRLAKDAIGEGKTREDHKDVANTLISAYSKALELRNLATLVGERNLGWRERRYLRFADAFEQRFIKQGYYERRSFEETLDIGWDVMSILPEDELTNARPQITQKFYRRHIFESIKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAT7</accession>
    <name>B1YAT7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0211</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349587.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAT7"/>
    <dbReference type="STRING" id="444157.Tneu_0211"/>
    <dbReference type="GeneID" id="6164955"/>
    <dbReference type="KEGG" id="tne:Tneu_0211"/>
    <dbReference type="eggNOG" id="arCOG05488">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2447777_0_0_2"/>
    <dbReference type="OrthoDB" id="24823at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="90" mass="10307" checksum="70ABD4F8F6A51B36" modified="2008-05-20" version="1">MEPRAFYDITEEEDRAELAKLIKAGVYSYAVLIPEDLPRRDVEEVFRAAGFSRVEVDASSWPRQIAVRTEGGTYVFKKVEEGVYRLSVHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAU4</accession>
    <name>B1YAU4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0218</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349594.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAU4"/>
    <dbReference type="STRING" id="444157.Tneu_0218"/>
    <dbReference type="GeneID" id="6164961"/>
    <dbReference type="KEGG" id="tne:Tneu_0218"/>
    <dbReference type="eggNOG" id="arCOG07016">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1987714_0_0_2"/>
    <dbReference type="OrthoDB" id="27150at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="118" mass="13673" checksum="E9E59ECDB283B6C7" modified="2008-05-20" version="1">MEELTRLRYMWAHLTFRNKPVIKKARREEGDPLEEVLKLCPRPYRMLCYMAMKELKLSLSAVAEAGRDIPTAAALALEDATSGRPDLPRLRRYLATGDPGPDVREVIDKWRRAARQMY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAV7</accession>
    <name>B1YAV7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0233</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349607.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAV7"/>
    <dbReference type="STRING" id="444157.Tneu_0233"/>
    <dbReference type="GeneID" id="6165027"/>
    <dbReference type="KEGG" id="tne:Tneu_0233"/>
    <dbReference type="eggNOG" id="arCOG01755">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019796_1_0_2"/>
    <dbReference type="OrthoDB" id="34275at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030267">
        <property type="term" value="F:glyoxylate reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016618">
        <property type="term" value="F:hydroxypyruvate reductase [NAD(P)H] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd12165">
        <property type="entry name" value="2-Hacid_dh_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050223">
        <property type="entry name" value="D-isomer_2-hydroxyacid_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10996:SF178">
        <property type="entry name" value="2-HYDROXYACID DEHYDROGENASE YGL185C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10996">
        <property type="entry name" value="2-HYDROXYACID DEHYDROGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52283">
        <property type="entry name" value="Formate/glycerate dehydrogenase catalytic domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="D-isomer specific 2-hydroxyacid dehydrogenase catalytic" evidence="4">
        <location>
            <begin position="38"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding" evidence="5">
        <location>
            <begin position="91"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="301" mass="33763" checksum="6A926E70127FD6A2" modified="2008-05-20" version="1">MELYVNFEIPRELEEELGRHFRVVKGGDLSRVEAALVSKLTPEELAKMPRLRFIQVVTAGLDHLPWEHIPPHVAVAGNAGSNADAVVEFALGMLLAAFKRVFYYSEKMRRGDYGKDIPVPVLAGKKVAVLGLGEIGSRAARALAALGAEVWGFARTPRDGPWRFTDRLEEALRGAYAAVCALPLTKHTRGLVRYEHLALMREDAVFVNVGRAEVVDREGALRIVKERPRFVFASDVWWSRHDFSKDAEFFALPNVIATPWVAGGYGSEEVWRRMVEEAVRNLITWASGGRPRNVARREDYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAW8</accession>
    <name>B1YAW8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">6-phosphogluconate dehydrogenase NAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1750</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351087.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAW8"/>
    <dbReference type="STRING" id="444157.Tneu_1750"/>
    <dbReference type="GeneID" id="6166277"/>
    <dbReference type="KEGG" id="tne:Tneu_1750"/>
    <dbReference type="eggNOG" id="arCOG00247">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035117_0_7_2"/>
    <dbReference type="OrthoDB" id="23890at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="entry name" value="N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029154">
        <property type="entry name" value="HIBADH-like_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015815">
        <property type="entry name" value="HIBADH-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051265">
        <property type="entry name" value="HIBADH-related_NP60_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43580:SF2">
        <property type="entry name" value="CYTOKINE-LIKE NUCLEAR FACTOR N-PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43580">
        <property type="entry name" value="OXIDOREDUCTASE GLYR1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14833">
        <property type="entry name" value="NAD_binding_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000103">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="6-phosphogluconate dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="6-phosphogluconate dehydrogenase NADP-binding" evidence="3">
        <location>
            <begin position="2"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="3-hydroxyisobutyrate dehydrogenase-like NAD-binding" evidence="4">
        <location>
            <begin position="147"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="266" mass="28457" checksum="74830559EDE3C75C" modified="2008-05-20" version="1">MDITVIGMGNMGRAFAKRAAAQGFNVYWWNRTREKVKDAPGKAIGKPSEARGLVAVFVSDDAALFDVLQNIGGDYIALCGTYSIDAVRRAVESMEKAFAMPVVGSPRNVEGGDAIYIVGAPDDLYMKLRPTLEKFGSLFHVGDSVKAAALKLAFNSLLISTVAALGESLALAEKYGIRPEVYKALLSMTVFKDVAGRYIDRMLSGAQPTFTVRNAAKDMRYAAQAAGEAGVGNAAISGVKTLYELLTALGHGEEDYVKAGYIPGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="101" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAX0</accession>
    <name>B1YAX0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 8">Asparagine--tRNA ligase</fullName>
            <ecNumber evidence="2 8">6.1.1.22</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1752</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.22" evidence="2 8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351089.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAX0"/>
    <dbReference type="STRING" id="444157.Tneu_1752"/>
    <dbReference type="GeneID" id="6166193"/>
    <dbReference type="KEGG" id="tne:Tneu_1752"/>
    <dbReference type="eggNOG" id="arCOG00407">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004553_2_0_2"/>
    <dbReference type="OrthoDB" id="5908at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004816">
        <property type="term" value="F:asparagine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006421">
        <property type="term" value="P:asparaginyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00776">
        <property type="entry name" value="AsxRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004522">
        <property type="entry name" value="Asn-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002312">
        <property type="entry name" value="Asp/Asn-tRNA-synth_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00457">
        <property type="entry name" value="asnS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003037">
        <property type="entry name" value="PRK03932.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003483">
        <property type="entry name" value="PRK05159.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22594:SF34">
        <property type="entry name" value="ASPARAGINE--TRNA LIGASE, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22594">
        <property type="entry name" value="ASPARTYL/LYSYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01042">
        <property type="entry name" value="TRNASYNTHASP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminoacyl-transfer RNA synthetases class-II family profile" evidence="9">
        <location>
            <begin position="132"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="NCBIfam" id="TIGR00457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="431" mass="49630" checksum="088FBAE75E4CC73B" modified="2008-05-20" version="1">MEAFKRAIPIAEALRRGEGYATVRGWVYRKRSLKEKVFVVLRDATGVIQLVFQRDKFKIAEDLNIESALVATGRLVREPRAPGGVELHVEKVEWAYAGEPYPINEDAAAADSEYLLDVRHLWLRSRKMQAVLKIRHTVFEAIHQYFRRSGFYEVQTPMFITAAVEGGATLFKVDYFGQPVYLTQSSQFYLEALIYSLEKVYVIAPSFRAEPSRTRRHLTEFWHAEMEMAWAGMEDAAKVGEEVISYVVEKVLQERAEELSLLGRKTEPLERAKPPFYRVSYDEAVEILRKKGVSISWGDDIGADEERALTLEFDKPLVLYGFPEKLKAFYHRNNPDRPEVTLSFDVLLPEGYGEVIGGGERIYDPVELVEKIKRFGLNPEDYQWYIDLRRYGSVPHAGFGLGVDRLVMWITGADHIRDVVPFPRDVRRTRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAX3</accession>
    <name>B1YAX3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF354 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1755</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351092.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAX3"/>
    <dbReference type="STRING" id="444157.Tneu_1755"/>
    <dbReference type="GeneID" id="6165404"/>
    <dbReference type="KEGG" id="tne:Tneu_1755"/>
    <dbReference type="eggNOG" id="arCOG01395">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067068_1_0_2"/>
    <dbReference type="OrthoDB" id="185087at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007152">
        <property type="entry name" value="DUF354"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39662:SF2">
        <property type="entry name" value="DUF354 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39662">
        <property type="entry name" value="DUF354 DOMAIN-CONTAINING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04007">
        <property type="entry name" value="DUF354"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005357">
        <property type="entry name" value="UCP005357"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="330" mass="36644" checksum="20448A808376B14C" modified="2008-05-20" version="1">MTKLLFDALTPKQARIAAVLQREGAGRGVELLITCRDYLHLSDVLEMYGVSHICVGRYGVGLYEKLVYGLERQMRLAELARGVDGMLSFPSPDAARVLFGLGKPLVVLNDTPHAEHVNRLVIPLSNVLIAPAAVPAEAWRPYCPRRVVTFDGVFEYMWISRFRPDEDVVRRLGLKPGEYVVFRPEEAHAAYYRWDAGGIRAVLLAELRRRGYVVVNVPRYPDQLVEGVVNLTKAVDHLQLAYFSAGVVSGGATMATEAALLGVPALSYFPGDYHLDRYLAERGAPLFRCRDAETCASALDEMLRLGRTQPPRLEDPTPLILEEALAAVKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAY5</accession>
    <name>B1YAY5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Extracellular solute-binding protein family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1767</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell envelope</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAY5"/>
    <dbReference type="STRING" id="444157.Tneu_1767"/>
    <dbReference type="KEGG" id="tne:Tneu_1767"/>
    <dbReference type="eggNOG" id="arCOG01799">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_18_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015276">
        <property type="term" value="F:ligand-gated monoatomic ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13530">
        <property type="entry name" value="PBP2_peptides_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001320">
        <property type="entry name" value="Iontro_rcpt_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018313">
        <property type="entry name" value="SBP_3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35936:SF19">
        <property type="entry name" value="AMINO-ACID-BINDING PROTEIN YXEM-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35936">
        <property type="entry name" value="MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00079">
        <property type="entry name" value="PBPe"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01039">
        <property type="entry name" value="SBP_BACTERIAL_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Solute-binding protein family 3/N-terminal" evidence="3">
        <location>
            <begin position="54"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="Ionotropic glutamate receptor C-terminal" evidence="4">
        <location>
            <begin position="54"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="276" mass="30220" checksum="48E7BDCB1AA04A97" modified="2008-05-20" version="1">MSVPKAYMDYRLILGIAIGVALGVLAMALFAGQSQPQTAAACPTSVEAIKKRGKLVVGTSADWPPYEYVEGGRIVGIDIDIARRIADSLGVQLEIRDMKFSALIEAVKRGDVDMVIADMAVTPERERQVLFSIPYQVDTSVVIVRRGEAVSGVEALRGKSIGVQVGTVQEDWAVKTLGNYSKIVRYDKVYPYMVEALRKGDVDAIVVGGVVGKALVKRFPDLEQAFTVGVRYSAVAVPLCAYDLKIQIDRVIYDMLQSGELERLISGWVERWLYGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAZ6</accession>
    <name>B1YAZ6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SNARE associated Golgi protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1778</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351115.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAZ6"/>
    <dbReference type="STRING" id="444157.Tneu_1778"/>
    <dbReference type="GeneID" id="6165517"/>
    <dbReference type="KEGG" id="tne:Tneu_1778"/>
    <dbReference type="eggNOG" id="arCOG03119">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101250_0_0_2"/>
    <dbReference type="OrthoDB" id="10722at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051311">
        <property type="entry name" value="DedA_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032816">
        <property type="entry name" value="VTT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42709">
        <property type="entry name" value="ALKALINE PHOSPHATASE LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42709:SF10">
        <property type="entry name" value="SNARE ASSOCIATED GOLGI PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09335">
        <property type="entry name" value="VTT_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="domain" description="VTT" evidence="2">
        <location>
            <begin position="30"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="205" mass="21671" checksum="2654DA53B7272F2A" modified="2008-05-20" version="1">MDYGLLGVFLAVLLSHFIPFIPLPGYIATVAYVAAHGDLPHIAAAVVATALGAALGKVAVFLYGYGIGKAVMGEELQYAKRFFDRVSKWGLDLAVFIFAVSPLADDVLYIPLGAAGYSLRRFFLAVFAGKLVLSAAIALFADAALMAVESYTGDVRLGAAAVAALTAAATFLVLRIKWSRVLAAYEDGGLKAALREALRSIARRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB15</accession>
    <name>B1YB15_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">pyruvate synthase</fullName>
            <ecNumber evidence="1">1.2.7.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1797</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>2 oxidized [2Fe-2S]-[ferredoxin] + pyruvate + CoA = 2 reduced [2Fe-2S]-[ferredoxin] + acetyl-CoA + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12765"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="1.2.7.1"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="1.2.7.1" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351134.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB15"/>
    <dbReference type="STRING" id="444157.Tneu_1797"/>
    <dbReference type="GeneID" id="6165003"/>
    <dbReference type="KEGG" id="tne:Tneu_1797"/>
    <dbReference type="eggNOG" id="arCOG01604">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060916_0_0_2"/>
    <dbReference type="OrthoDB" id="372091at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="entry name" value="Pyruvate-ferredoxin oxidoreductase, PFOR, domain III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051626">
        <property type="entry name" value="Oxidoreductase_gamma_subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011894">
        <property type="entry name" value="PorC_KorC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011898">
        <property type="entry name" value="PorD_KorD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02175">
        <property type="entry name" value="PorC_KorC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02179">
        <property type="entry name" value="PorD_KorD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43366">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43366:SF1">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14697">
        <property type="entry name" value="Fer4_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="Pyruvate-ferredoxin oxidoreductase, PFOR, domain III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="240"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="282"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00049357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="312" mass="33862" checksum="829099A52AF29734" modified="2008-05-20" version="1">MRVETIWLGRGGQGIVTATYIVANAAVIDGFYAIANPEFGAERRGAPVKAFLTIDKNPIEDQEPIKTPDVAIIFDDKLIDPMRFAIDAVKPGGYVIVNSAKQPEEVRKLVGRNDVYVVVLDAVGIAMKHVGLPVPNGPLAGAFSKVMGFPRLESIKTAFENQLGKAVEENFAATKEAYEVAVVLKPEKVDASAKPKGVISTTSAFLTGPYELVGWQQVNKGGAVGPGSSLPYLTGGWRIEKPIIDHSKCIMCRKCWLYCPDDAIIEAWREAPGPRGRVFRTKAIDFDYQYCKGCGVCAEVCPTGAIQMVREI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB16</accession>
    <name>B1YB16_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="13">NADH/Ubiquinone/plastoquinone (Complex I)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Tneu_1798</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>a ubiquinone + NADH + 5 H(+)(in) = a ubiquinol + NAD(+) + 4 H(+)(out)</text>
            <dbReference type="Rhea" id="RHEA:29091"/>
            <dbReference type="Rhea" id="RHEA-COMP:9565"/>
            <dbReference type="Rhea" id="RHEA-COMP:9566"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16389"/>
            <dbReference type="ChEBI" id="CHEBI:17976"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="7.1.1.2"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351135.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB16"/>
    <dbReference type="STRING" id="444157.Tneu_1798"/>
    <dbReference type="GeneID" id="6164659"/>
    <dbReference type="KEGG" id="tne:Tneu_1798"/>
    <dbReference type="eggNOG" id="arCOG06059">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_755708_0_0_2"/>
    <dbReference type="OrthoDB" id="29144at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050175">
        <property type="entry name" value="Complex_I_Subunit_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46552">
        <property type="entry name" value="NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46552:SF1">
        <property type="entry name" value="NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0249">Electron transport</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0520">NAD</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="79"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="117"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="145"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="176"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="201"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="275"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="307"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="339"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="domain" description="NADH:quinone oxidoreductase/Mrp antiporter transmembrane" evidence="12">
        <location>
            <begin position="134"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00049551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB40716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="367" mass="38374" checksum="11EAC820FA4A9BD5" modified="2008-05-20" version="1">MAGIELILPVYFAARVAAGFGRWGAAVDVAYVALLAFLMWQISPLYLLSLPFYLAAAAVGGGVFRDYAGFASALSLTGVYLMFLPAAYLKGLGFVLAVLAPAALAATARDRGSLEGFFRYMVVSVFASSFLFIGLGQRGAPVGEAYILLAIALELGVAPMFLWVPDVYGRTNAVGLAILASLPKLSAAFALLAFMPKAPALLAHVLGALSMATGNLGALTSADARRILAYSTVAHSGFALFIYPASPEVALALVLADSFGKMGLFYALGSGGPRWAARVLALHQIGLPPLFGFWPKALLVLLTAERVGPLFALYVLVNVVAVAPYYFRLMESIPEGRSAFPAAVGVAVAALGAAAPLWLIYNVSSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB74</accession>
    <name>B1YB74_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phospholipase D/transphosphatidylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0252</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349626.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB74"/>
    <dbReference type="STRING" id="444157.Tneu_0252"/>
    <dbReference type="GeneID" id="6166170"/>
    <dbReference type="KEGG" id="tne:Tneu_0252"/>
    <dbReference type="eggNOG" id="arCOG02041">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066800_0_0_2"/>
    <dbReference type="OrthoDB" id="42630at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030572">
        <property type="term" value="F:phosphatidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032049">
        <property type="term" value="P:cardiolipin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.870.10">
        <property type="entry name" value="Endonuclease Chain A"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001736">
        <property type="entry name" value="PLipase_D/transphosphatidylase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21248">
        <property type="entry name" value="CARDIOLIPIN SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21248:SF22">
        <property type="entry name" value="PHOSPHOLIPASE D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56024">
        <property type="entry name" value="Phospholipase D/nuclease"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50035">
        <property type="entry name" value="PLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="334"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="domain" description="PLD phosphodiesterase" evidence="3">
        <location>
            <begin position="114"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="297"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="356" mass="39709" checksum="D4B9CBD0C6A78DAB" modified="2008-05-20" version="1">MRVLALALLLALLALAVSPIRLEVQSVLVSPINTTKIVDYVKAAKKSVYVEVYVLTYRELAEALASAAKRGVEVYVVLSARVYGGVPPQAKELAKYMEENGVKVAWNNDFPNVHTKLYVIDNETVIIGNINPTVSGFQRNKGVMLVIRNATLARQLATIVLNDYRRVYPKYNYAGVLVSPINSEEGLLWILQQKGDLYIAMEQIYMDSGLVQYIVQHPTYYAVVARTDADIRVAVDEDLVAKIIVVGDHVYVGSINIGHYSIQRNREVGLLIENPQLAQRLKALVLQWYSEAGGQTHAGATTTEATRTTVHRTTTTSHTATHQPTPSRGVPWDVIFWLVVIILAALFVLWMNRRRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB87</accession>
    <name>B1YB87_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">General substrate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0265</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349639.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB87"/>
    <dbReference type="STRING" id="444157.Tneu_0265"/>
    <dbReference type="GeneID" id="6165593"/>
    <dbReference type="KEGG" id="tne:Tneu_0265"/>
    <dbReference type="eggNOG" id="arCOG02691">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_39_5_2"/>
    <dbReference type="OrthoDB" id="117970at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43045">
        <property type="entry name" value="SHIKIMATE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43045:SF1">
        <property type="entry name" value="SHIKIMATE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00217">
        <property type="entry name" value="SUGAR_TRANSPORT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="141"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="227"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="267"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="296"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="325"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="360"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="392"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily (MFS) profile" evidence="8">
        <location>
            <begin position="5"/>
            <end position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="421" mass="44774" checksum="DE9F109B52B8F5B6" modified="2008-05-20" version="1">MIRLVTAASTVGSLIEWYEVFAYVSLSSYISKNFFPQQDPVAATILTWLVFATTFVVRPVGAVLFGHLGDRVGRKATFLATLLLMGVATFLIGLLPTYGQIGVAAPVLLTVLRILQGLSLGGELGGAVTYVLEHAPSRSRAFYVGFIAATPPLGLGLSSFTLVATAALMPPQAFQDYGWRVPFLVSIVLTVLGLVLRLKLAETPLFEKIRGEGAVSKMPVVEAVARYPGYILVGVAVAAGHAVLAYTSTGYIFPFLTQVVKLSPVEANLAVGLATVAQLPFYIINAWLADRVGRRVIYSAGVALALATYYPIFSWLVGVKDVGSVALGVFVLVLATAFTFSVLGTALAEMFPTRVRYTGMSLAINLGIGLFGGFTPSIVQAISLWLKNPLAGVLLYTYVVAGFALAVALLLMPETKDKPLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBE1</accession>
    <name>B1YBE1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Cytochrome oxidase,subunit I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0321</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349693.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBE1"/>
    <dbReference type="STRING" id="444157.Tneu_0321"/>
    <dbReference type="GeneID" id="6165358"/>
    <dbReference type="KEGG" id="tne:Tneu_0321"/>
    <dbReference type="eggNOG" id="arCOG02720">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_747267_0_0_2"/>
    <dbReference type="OrthoDB" id="15382at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070069">
        <property type="term" value="C:cytochrome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019646">
        <property type="term" value="P:aerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002585">
        <property type="entry name" value="Cyt-d_ubiquinol_oxidase_su_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01654">
        <property type="entry name" value="Cyt_bd_oxida_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4" id="KW-0349">Heme</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="6"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="56"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="92"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="127"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="175"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="210"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="251"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="282"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="335"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="367" mass="39731" checksum="A985311B2C368CE3" modified="2008-05-20" version="1">MNEAVFVGFVGLGLSVTLHIIFTAMTLGTGIIAALYRWIAYKNNDAWAELFARKAFKVLIVSELFSGVWGTIITVFLAGFFTAVTTLATNTLFIPISIAIASIMVRIPAIAISWYTWGKISPRSHSIVMWIMALSGFGIPFGFRAIFAEINHPQAIGYYLQTGANPGWMAYGNPLFWTLYLHTVAAVISTGGFVVASLMALEKDPRGVKVGLTFGFGLLTAQLLFGPLYWYSLGVYSPLLYQAVNSTFLPIFAVKLAAVVALLALGYTALRAAKAGAVAPHVKFLGPLALFVVALGEILNDGARYPNLVIVGDKGLPADLFANFYMDIPMPAVNVILAFLVLAIVVFTTAAFYALYRRFLAEVPTVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBE6</accession>
    <name>B1YBE6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0326</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349698.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBE6"/>
    <dbReference type="STRING" id="444157.Tneu_0326"/>
    <dbReference type="GeneID" id="6165289"/>
    <dbReference type="KEGG" id="tne:Tneu_0326"/>
    <dbReference type="eggNOG" id="arCOG01291">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062373_0_0_2"/>
    <dbReference type="OrthoDB" id="15538at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040086">
        <property type="entry name" value="MJ0683-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43432:SF4">
        <property type="entry name" value="RADICAL SAM CORE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43432">
        <property type="entry name" value="SLR0285 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="4">
        <location>
            <begin position="31"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="354" mass="38790" checksum="E58619FC3B78A94D" modified="2008-05-20" version="1">MEAWRRKAAVLEKLAALLEDVGKARRDHHARRPPRPCGITVHTGVGCPLACAYCYIYDMGFPGSVKPYPLTPLEMAYAIAANPHVAVGELGTLVAVGSVTEPFLPETRELALGYIAAFVEHLGNPVQVATKYPPPPELAKYRADVLISVTDVEGRLEPKAPKPVERIRGAGELVKRGGSATLFVRPVVPGVTDRGLERLLALAWDAGIRRVVFGTLRATPAIAARLRSFGVDITPYVRRLEEGRQIPIRYPKGRLAEAARRWGFEVLPASCASNVLAHGQKCALCSWGPCGGVLEVDVEDVRDFLEHRGYRGADPHFDGRRVAVKVKLRREDKIFLEQALRVPVVSQGKARHQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBM1</accession>
    <name>B1YBM1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphoribosylaminoimidazole-succinocarboxamide synthase</fullName>
            <ecNumber evidence="6">6.3.2.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">SAICAR synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">purC</name>
        <name evidence="8" type="ordered locus">Tneu_1908</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + L-aspartate + ATP = (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate + ADP + phosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:22628"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58443"/>
            <dbReference type="ChEBI" id="CHEBI:77657"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 6">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the SAICAR synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.6" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351242.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBM1"/>
    <dbReference type="STRING" id="444157.Tneu_1908"/>
    <dbReference type="GeneID" id="6164908"/>
    <dbReference type="KEGG" id="tne:Tneu_1908"/>
    <dbReference type="eggNOG" id="arCOG04421">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061495_0_0_2"/>
    <dbReference type="OrthoDB" id="10775at2157"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00131"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004639">
        <property type="term" value="F:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00137">
        <property type="entry name" value="SAICAR_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028923">
        <property type="entry name" value="SAICAR_synt/ADE2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050089">
        <property type="entry name" value="SAICAR_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018236">
        <property type="entry name" value="SAICAR_synthetase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43599">
        <property type="entry name" value="MULTIFUNCTIONAL PROTEIN ADE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43599:SF3">
        <property type="entry name" value="SI:DKEY-6E2.2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01259">
        <property type="entry name" value="SAICAR_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56104">
        <property type="entry name" value="SAICAR synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01057">
        <property type="entry name" value="SAICAR_SYNTHETASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 6 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 6" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SAICAR synthetase/ADE2 N-terminal" evidence="7">
        <location>
            <begin position="4"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="235" mass="26460" checksum="9E53A36F9FB6E1DD" modified="2008-05-20" version="1">MELVYEGKAKRVYAEGDILLLEFKDELTAFDGAKRDSAPGKGALAASLSALLFAYLRGRGVESHFIGQRGPNLLEVRRAQALPLEVIVRFRAYGSYLKRMPLVEPLRPFKKPLVELHLKDDRLHDPLILPQDAIEAGLVDEAELGQITDVAVRAGELLRDLYRRAGCDFIDVKFEFGRVGGRLVLIDEISGDTFRVLCGGEHLDKEYYRKTGDVRGLLERYGKLLEYTRLVLEAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBP1</accession>
    <name>B1YBP1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NAD(+) kinase</fullName>
            <ecNumber evidence="1">2.7.1.23</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1928</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.7.1.23" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBP1"/>
    <dbReference type="STRING" id="444157.Tneu_1928"/>
    <dbReference type="KEGG" id="tne:Tneu_1928"/>
    <dbReference type="eggNOG" id="arCOG01348">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1140606_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019674">
        <property type="term" value="P:NAD+ metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006741">
        <property type="term" value="P:NADP+ biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10330">
        <property type="entry name" value="Probable inorganic polyphosphate/atp-NAD kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.30">
        <property type="entry name" value="Probable inorganic polyphosphate/atp-NAD kinase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017438">
        <property type="entry name" value="ATP-NAD_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017437">
        <property type="entry name" value="ATP-NAD_kinase_PpnK-typ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20275:SF43">
        <property type="entry name" value="BIFUNCTIONAL NADP PHOSPHATASE_NAD KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20275">
        <property type="entry name" value="NAD KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20143">
        <property type="entry name" value="NAD_kinase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="NAD kinase/diacylglycerol kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="243" mass="27237" checksum="A0566DFBADA7D5AC" modified="2008-05-20" version="1">MGVYAVFYRPDLKPLAEDFMRRYGAVELDCRGSYSHVFILGGDGTLLEALRRHPCLLDAVVVHMGLGRVNFYRSSDAPLSIEEAVGRVERGDYGVLEFSTLVYGDCTALNEFSIYRREMGRLLSFRLESDGGELEGRADGVIVSTPHGASGYVVSTFGPVVDFRAEVVVISFIAPFTLYLRPLVLSAGRVLVETSEDAVLVCDGRESRPGRRFEIRRGDRRLRLAVFGEFRFLNRVLERLRSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBP8</accession>
    <name>B1YBP8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1935</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351269.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBP8"/>
    <dbReference type="GeneID" id="6165011"/>
    <dbReference type="KEGG" id="tne:Tneu_1935"/>
    <dbReference type="eggNOG" id="arCOG05435">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_178224_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="109" mass="12752" checksum="47F240A6E2E009A8" modified="2008-05-20" version="1">MEINWDVNFIAMYTHYVRFSPVGEYLRLVILRRLSQGPARVEEVDQLAESAVRKIGVKYNWRVWPELLKREVVVRDGVVELTRVGRWMLEQTGEEVAEYVKKTLGVSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBQ8</accession>
    <name>B1YBQ8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0342</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349713.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBQ8"/>
    <dbReference type="STRING" id="444157.Tneu_0342"/>
    <dbReference type="GeneID" id="6165307"/>
    <dbReference type="KEGG" id="tne:Tneu_0342"/>
    <dbReference type="eggNOG" id="arCOG02616">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009273_1_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034391">
        <property type="entry name" value="AdoMet-like_SPASM_containing"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050377">
        <property type="entry name" value="Radical_SAM_PqqE_MftC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11228">
        <property type="entry name" value="RADICAL SAM DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11228:SF34">
        <property type="entry name" value="TUNGSTEN-CONTAINING ALDEHYDE FERREDOXIN OXIDOREDUCTASE COFACTOR MODIFYING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01387">
        <property type="entry name" value="BtrN-like_SPASM_domain_contain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01067">
        <property type="entry name" value="SPASM/twitch_domain_containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="1"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="335" mass="38460" checksum="3B740737406A2927" modified="2008-05-20" version="1">MYKPRIYQVEVSTACNANCVYCPVSYFRQRGLWPVKLMDFDLYKRFLAEVEEAEYIHLQGWGEPLLHPRLIEMAASAKKIANVGITTNGTLLREEVARTLVEIPIDLVAVTFAGARAETHNRYRVGNDFNVVFKNVEYLLRIRHEKPEAVAVYMLLGDNYRELPEFVKMAARLGVDRVKVSNLNYLFNVDVASLKAFSDRWEKPREIERALAQAQQIAREVGVGFVTDNIAPFELAECPETPTKAVFITADGDICPCVYLGLPLPEIPRLFNMRFYMIPKTCWGNLKMISLKKIINSKKAKEFRSMFEYRRYNMDVGTIGEPPDVCKTCYRLFGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBS7</accession>
    <name>B1YBS7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0361</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349731.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBS7"/>
    <dbReference type="GeneID" id="6164917"/>
    <dbReference type="KEGG" id="tne:Tneu_0361"/>
    <dbReference type="eggNOG" id="arCOG00319">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_975288_0_0_2"/>
    <dbReference type="OrthoDB" id="7738at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="279" mass="31010" checksum="D0766AE3887F667B" modified="2008-05-20" version="1">MRSANRRLIRVRGSYVVYLPKEYISRFGVEEVVVYWEGPFLGVKPAGVERTARFTWRGGVEKVVVGAYASGFDAVVLAEAPPGALDALRPALEVVEGRAAETGGEVRVDFFDSLVDKGAVAEMMLRAVRYMADALAAGAASPRGISALDQEVDRHRLRMSRLCVRWPTPTCPFYIQLARYFERAADHLAALAAEEADRRLFKLLAEAAEGLERARGDLEGALEYLRRLGGMRHMALEAARGERETLHAVRVLDYLENSAEVYIDMALYSAHQCRGCDER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBU9</accession>
    <name>B1YBU9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0385</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATP-dependent AMP-binding enzyme family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349753.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBU9"/>
    <dbReference type="STRING" id="444157.Tneu_0385"/>
    <dbReference type="GeneID" id="6165061"/>
    <dbReference type="KEGG" id="tne:Tneu_0385"/>
    <dbReference type="eggNOG" id="arCOG06060">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_3_6_2"/>
    <dbReference type="OrthoDB" id="193284at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003987">
        <property type="term" value="F:acetate-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006085">
        <property type="term" value="P:acetyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="entry name" value="N-terminal domain of ligase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032387">
        <property type="entry name" value="ACAS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_synth/lig_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24095">
        <property type="entry name" value="ACETYL-COENZYME A SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24095:SF232">
        <property type="entry name" value="ACETYL-COENZYME A SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16177">
        <property type="entry name" value="ACAS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acetyl-coenzyme A synthetase N-terminal" evidence="3">
        <location>
            <begin position="22"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-dependent synthetase/ligase" evidence="2">
        <location>
            <begin position="82"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-dependent synthetase/ligase" evidence="2">
        <location>
            <begin position="254"/>
            <end position="464"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="572" mass="63693" checksum="5FECBE68A2EFE8D8" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBX4</accession>
    <name>B1YBX4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0410</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349778.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBX4"/>
    <dbReference type="STRING" id="444157.Tneu_0410"/>
    <dbReference type="GeneID" id="6166204"/>
    <dbReference type="KEGG" id="tne:Tneu_0410"/>
    <dbReference type="eggNOG" id="arCOG06062">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2230484_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="105" mass="11643" checksum="FFEB5DE13C6C06B0" modified="2008-05-20" version="1">MTFRMDDGISPRDLKIEAILEGLRGIRKMYLECVSRGKPAVCYAKAAGELISMFGSLMPNVWHDQELRFYILRGADGALLFYDAEADRYALVDIGKAVSSVLGHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC07</accession>
    <name>B1YC07_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP10</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1946</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351280.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC07"/>
    <dbReference type="STRING" id="444157.Tneu_1946"/>
    <dbReference type="GeneID" id="58787357"/>
    <dbReference type="KEGG" id="tne:Tneu_1946"/>
    <dbReference type="eggNOG" id="arCOG00746">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_181231_1_0_2"/>
    <dbReference type="OrthoDB" id="28205at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="53" mass="5913" checksum="953E9109A26F0E25" modified="2008-05-20" version="1">MASVYTVLGPHAYMLQRYGVSPNEDVRTAVDKLRLSAPHLARLLGELALRFSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC74</accession>
    <name>B1YC74_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Transposase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_0439</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the transposase 35 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC74"/>
    <dbReference type="STRING" id="444157.Tneu_0439"/>
    <dbReference type="KEGG" id="tne:Tneu_0439"/>
    <dbReference type="eggNOG" id="arCOG00683">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040997_1_0_2"/>
    <dbReference type="OrthoDB" id="21365at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032196">
        <property type="term" value="P:transposition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010095">
        <property type="entry name" value="Cas12f1-like_TNB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001959">
        <property type="entry name" value="Transposase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021027">
        <property type="entry name" value="Transposase_put_HTH"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040570">
        <property type="entry name" value="guided_TnpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07282">
        <property type="entry name" value="Cas12f1-like_TNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12323">
        <property type="entry name" value="HTH_OrfB_IS605"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01385">
        <property type="entry name" value="OrfB_IS605"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0815">Transposition</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Transposase putative helix-turn-helix" evidence="10">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="Probable transposase IS891/IS1136/IS1341" evidence="8">
        <location>
            <begin position="198"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="domain" description="Cas12f1-like TNB" evidence="9">
        <location>
            <begin position="327"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="410"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF12323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="13">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="434" mass="50385" checksum="FC0B8F293C7B4246" modified="2008-05-20" version="1">MPSTRTARLRLLPTTPQERKLHKLADAAAKAWNEVNYLRRQQFFAKQGVDLRGTYREVYRKYRDVLKVNVGQVLNKNNEAWLSFFALLAKLNAGELHMKKVSPPGYWKDRLLGKRVKRLIVRSDRYYVEPINDGEGYIVLKDFGMRVRYAGVIKWSGKQGRLEIVYERGRWFAYLTVEVGKPAKPRQYVRGTYDRIQIRQPRGNKRAFIDVGISNLFAVVIEGSDKAILIKGTPLKAEYFWWKRQKALYQSVRDVRRNLGLPWAEWHRRYLRALWKMRERLRHYRNTAVRGLAEMLWESGVSEVYVGYPEDIAHDQQSEYVVSVWGYRRLVQRLAEVLAEYGIKLYVVDEHSTSRACSICGEIHENGRVYRGLYVCRKFGVALNADVNAARNIAANLGFETPAPRRIETYYPTSNGLTPKRGNGRDPHSAAPAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC75</accession>
    <name>B1YC75_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349808.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC75"/>
    <dbReference type="GeneID" id="6166028"/>
    <dbReference type="KEGG" id="tne:Tneu_0440"/>
    <dbReference type="eggNOG" id="arCOG03768">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1830694_0_0_2"/>
    <dbReference type="OrthoDB" id="34747at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009321">
        <property type="entry name" value="DUF973"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06157">
        <property type="entry name" value="DUF973"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="142" mass="14653" checksum="B8D06CFF204C6C66" modified="2008-05-20" version="1">MAAGLEGLRLLRSGIQYLIISVVLSLVLWLLGPVFGLIAAVAAFVLAILGFVKIWRGFTALESVVGSTTLGKVGVILIVTVILAIVGVVLLGIQLYKIGAHFNEGTLKAGGIVTAIPLISFIGLILAYVGLGNLLSSQTAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC84</accession>
    <name>B1YC84_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Arsenite-transporting ATPase</fullName>
            <ecNumber evidence="3">3.6.3.16</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0450</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arsA ATPase family.</text>
    </comment>
    <dbReference type="EC" id="3.6.3.16" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349817.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC84"/>
    <dbReference type="STRING" id="444157.Tneu_0450"/>
    <dbReference type="GeneID" id="6165961"/>
    <dbReference type="KEGG" id="tne:Tneu_0450"/>
    <dbReference type="eggNOG" id="arCOG02849">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040761_4_0_2"/>
    <dbReference type="OrthoDB" id="46198at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02035">
        <property type="entry name" value="ArsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025723">
        <property type="entry name" value="ArsA/GET3_ATPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016300">
        <property type="entry name" value="ATPase_ArsA/GET3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00345">
        <property type="entry name" value="GET3_arsA_TRC40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10803">
        <property type="entry name" value="ARSENICAL PUMP-DRIVING ATPASE ARSENITE-TRANSLOCATING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10803:SF3">
        <property type="entry name" value="ATPASE GET3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02374">
        <property type="entry name" value="ArsA_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ArsA/GET3 Anion-transporting ATPase-like" evidence="2">
        <location>
            <begin position="15"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="334" mass="38075" checksum="8F0DCFC81E1536B5" modified="2008-05-20" version="1">MIGLGGLLERNPRLKVFIYAGKGGLGKTTLSAATSVKLSSLGKKTLVFSTDPQASLSDVFEQNVFGRGEVKLAENLYVMEIDADKKINEYVASIKKKIVDMYRLDKLPPDIEEYIDSAAAEPAMYESAVYDAMVDVVSEGRYDYYVFDMPPFGHGIRMIAIADVISKWVEKITELRRQAYEYGRVAASLKKQKLTYEDEILRELEYIRGRILKFRDIVMNSETTAFMTVMTPERMTILDTEKALEMFESLGLRLTGIVVNQVYPPELAKNPDAPAYIRRKVEEQRKYMAEIADKFGKYIIAVVPMLNREPKGLDTLKAVAEELWRPSRRLEEYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCC2</accession>
    <name>B1YCC2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0488</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349855.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCC2"/>
    <dbReference type="STRING" id="444157.Tneu_0488"/>
    <dbReference type="CAZy" id="GT2">
        <property type="family name" value="Glycosyltransferase Family 2"/>
    </dbReference>
    <dbReference type="GeneID" id="6165836"/>
    <dbReference type="KEGG" id="tne:Tneu_0488"/>
    <dbReference type="eggNOG" id="arCOG00896">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033536_7_2_2"/>
    <dbReference type="OrthoDB" id="351177at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04179">
        <property type="entry name" value="DPM_DPG-synthase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050256">
        <property type="entry name" value="Glycosyltransferase_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48090:SF7">
        <property type="entry name" value="RFBJ PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48090">
        <property type="entry name" value="UNDECAPRENYL-PHOSPHATE 4-DEOXY-4-FORMAMIDO-L-ARABINOSE TRANSFERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="280"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="304"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="335"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="2">
        <location>
            <begin position="88"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="362" mass="39755" checksum="8C028435996099BF" modified="2008-05-20" version="1">MSVRKYPLVYLASPGLVLLVVTMALILITIDKFNESRIIDTLTAASAFLAYVASNMLLSAAIAVYTSTRTSYIPPEMPPIPKAKTVALIPAYNEEGRIGQVVTATKRYVDLVIVVDDGSKDNTAREAQEAGALVIRHPRNMGKGAAVATLIKAALKADAQYAILIDADGQHNPHDIPRMLQPLIQGQADHVVANRFTNTKMPTIRKIGYKALALLHAILIKPMGDPFNGYRAFTRKALELLDREFDPAYGVEIEINNALRRLRTTEVTSKVIYHEKSSKANMLIQGLNLAWAIIWTTITKSPKITILAAVALYTASTALLIHAINLFNVTRYMRLIYTTLALTLPVIATQMIAATLATHVRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCD9</accession>
    <name>B1YCD9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0509</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349872.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCD9"/>
    <dbReference type="STRING" id="444157.Tneu_0509"/>
    <dbReference type="GeneID" id="6165924"/>
    <dbReference type="KEGG" id="tne:Tneu_0509"/>
    <dbReference type="eggNOG" id="arCOG06993">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_177469_0_0_2"/>
    <dbReference type="OrthoDB" id="29002at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="104" mass="11377" checksum="5A9AFED62DA886E2" modified="2008-05-20" version="1">MSPVATPEPRVYTTVTNAPPPPTEPAGGQTPACVADVWHDRRAEALGLRLRTGEPRRVLVGRGTFVIYADDHGIWGIDVEVERWDRNPAEVDRALAETGVKTYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCE4</accession>
    <name>B1YCE4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0514</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349877.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCE4"/>
    <dbReference type="STRING" id="444157.Tneu_0514"/>
    <dbReference type="CAZy" id="GT2">
        <property type="family name" value="Glycosyltransferase Family 2"/>
    </dbReference>
    <dbReference type="GeneID" id="6165858"/>
    <dbReference type="KEGG" id="tne:Tneu_0514"/>
    <dbReference type="eggNOG" id="arCOG01381">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_914048_0_0_2"/>
    <dbReference type="OrthoDB" id="28831at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00761">
        <property type="entry name" value="Glyco_tranf_GTA_type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="1">
        <location>
            <begin position="4"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="306" mass="35150" checksum="F24B37BC9E4A55D3" modified="2008-05-20" version="1">MVVVAMITKNSLSRLGDRLGVVLESTLQIPYRTFVLVDDSTDDTAKYVEGRLGGLREVVVLRSRAARPTRATARQAAVDYFLQYTSDEWLMFIDDDVVLRSGWWEEAQRYMAEPRVGLIWGVDFTTYWGSRLAYLRARGVDVVEYAIKRFNVRGGLHDTLLRRGAIEGLRLPPWLNVYEDAWVKKYVECRGFEARVVRTGADHLRAEGGSGYSAKDFLLASYVDGILRLEGVTYLSLLKSLLGLPAYLYYGWRSGYGGLEQWRARVVYKYNALRARRRCRWETCRLLLDPDLHEELARCLPREVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCG1</accession>
    <name>B1YCG1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 9 10">Quinolinate synthase</fullName>
            <ecNumber evidence="2 9 10">2.5.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">nadA</name>
        <name evidence="11" type="ordered locus">Tneu_0531</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>iminosuccinate + dihydroxyacetone phosphate = quinolinate + phosphate + 2 H2O + H(+)</text>
            <dbReference type="Rhea" id="RHEA:25888"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29959"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
            <dbReference type="EC" id="2.5.1.72"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="9">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 9">Cofactor biosynthesis; NAD(+) biosynthesis; quinolinate from iminoaspartate: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the quinolinate synthase family. Type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.72" evidence="2 9 10"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349894.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCG1"/>
    <dbReference type="STRING" id="444157.Tneu_0531"/>
    <dbReference type="GeneID" id="6165814"/>
    <dbReference type="KEGG" id="tne:Tneu_0531"/>
    <dbReference type="eggNOG" id="arCOG04459">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047382_0_0_2"/>
    <dbReference type="OrthoDB" id="5931at2157"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00327"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008987">
        <property type="term" value="F:quinolinate synthetase A activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034628">
        <property type="term" value="P:'de novo' NAD+ biosynthetic process from L-aspartate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10800">
        <property type="entry name" value="NadA-like"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00568">
        <property type="entry name" value="NadA_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003473">
        <property type="entry name" value="NadA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036094">
        <property type="entry name" value="NadA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023066">
        <property type="entry name" value="Quinolinate_synth_type2"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00550">
        <property type="entry name" value="nadA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006878">
        <property type="entry name" value="PRK09375.1-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30573:SF0">
        <property type="entry name" value="QUINOLINATE SYNTHASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30573">
        <property type="entry name" value="QUINOLINATE SYNTHETASE A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02445">
        <property type="entry name" value="NadA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142754">
        <property type="entry name" value="NadA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9" id="KW-0408">Iron</keyword>
    <keyword evidence="8 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4 9" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9 11" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="109"/>
            <end position="111"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="195"/>
            <end position="197"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="220"/>
        </location>
        <ligand>
            <name>iminosuccinate</name>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="265"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="NCBIfam" id="TIGR00550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="308" mass="34349" checksum="31650E974B3D2E58" modified="2008-05-20" version="1">MDYAAEVRRLKSEKNAVVLAHNYQRPEVQDVADFVGDSLNLSLAARETGASLVVFAGVYFMAETAAILNPNKRVLIPDPNAGCSLADAVDVEAVRRWRERHPGGVVVAYINTRAEVKALADYVCTSANCLKVVEAIPRDKPLLFLPDKYLGMYIAAKTGRPMDIWDGACHVHERLTAPQILTKVKLYRDAEVLIHPECGCGTACLVELPRLGVEPRFLSTEGMVKYVRQSPARRFIVATETGIIYRMAKEAPGKEFIPASEEAVCEYMKLTTIEKVYRSLRDEVYRVAVPEEVAKRARAAIERMFQFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCI5</accession>
    <name>B1YCI5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Polymerase beta nucleotidyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0556</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCI5"/>
    <dbReference type="STRING" id="444157.Tneu_0556"/>
    <dbReference type="KEGG" id="tne:Tneu_0556"/>
    <dbReference type="eggNOG" id="arCOG02110">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_156338_0_0_2"/>
    <dbReference type="OrthoDB" id="23323at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="137" mass="15835" checksum="2629C92A60B2924D" modified="2008-05-20" version="1">MSVFVEILVGRCYRVSLDRLKAFPWGRYVKFAFLFGSAASGGPAGDLDIAIPRLDLERYSELLGDLAVWLDVNEDFLDLVEIWEEAPCPIVLEALRGVPLYVEDWDLVFRFFNVCQDWEIDARKLQIHEILLGRWRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCT3</accession>
    <name>B1YCT3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0657</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350016.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCT3"/>
    <dbReference type="STRING" id="444157.Tneu_0657"/>
    <dbReference type="GeneID" id="6165234"/>
    <dbReference type="KEGG" id="tne:Tneu_0657"/>
    <dbReference type="eggNOG" id="arCOG01543">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067218_4_5_2"/>
    <dbReference type="OrthoDB" id="23833at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003954">
        <property type="term" value="F:NADH dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009060">
        <property type="term" value="P:aerobic respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.3270:FF:000014">
        <property type="entry name" value="NADH dehydrogenase subunit I (NuoI)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010226">
        <property type="entry name" value="NADH_quinone_OxRdtase_chainI"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004541">
        <property type="entry name" value="PRK05888.2-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10849:SF35">
        <property type="entry name" value="FORMATE HYDROGENLYASE SUBUNIT 6-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10849">
        <property type="entry name" value="NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="45"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="79"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="156" mass="18010" checksum="1B2D1AECB5306772" modified="2008-05-20" version="1">MSGKLGYIVKATLDALAVAARNFAKPERITVFYPYEKLEYGRMRGWIGLWTEKCTSCMLCARICPTNAIKMYMEPNGKRYPGIDYGRCIMCHFCIDVCPTDALYPTDIKELAWYDYKEMIYTPDMEREPPKIHSPYKAVKVAIKYVGGLPRKVRVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCT4</accession>
    <name>B1YCT4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">NADH dehydrogenase (Quinone)</fullName>
            <ecNumber evidence="6">1.6.5.11</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0658</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="1.6.5.11" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCT4"/>
    <dbReference type="STRING" id="444157.Tneu_0658"/>
    <dbReference type="KEGG" id="tne:Tneu_0658"/>
    <dbReference type="eggNOG" id="arCOG01546">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015134_0_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003954">
        <property type="term" value="F:NADH dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009060">
        <property type="term" value="P:aerobic respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01350">
        <property type="entry name" value="NDH1_NuoH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001694">
        <property type="entry name" value="NADH_UbQ_OxRdtase_su1/FPO"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004741">
        <property type="entry name" value="PRK06076.1-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11432">
        <property type="entry name" value="NADH DEHYDROGENASE SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11432:SF3">
        <property type="entry name" value="NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00146">
        <property type="entry name" value="NADHdh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="88"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="121"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="160"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="195"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="253"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="285"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="329"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="349" mass="37742" checksum="79886D005FDF50A6" modified="2008-05-20" version="1">MENMDWAMDLGGLLLSPRLWFFVLMLAASGGILLTVVWFERKAAARVQMRVGPYHVSPQLGGYLQLLADALKFLSSEPIVPRGAHKTLFTLGPAIFTTLAFGASLLLPLTPSLKLIKDNSLLQYGLLFSIVILLLVSIAVVVIGWAANNKFAYVGAAREALLVAAYELPLLLSILAMAILYGTLDPIQIVEKQTFVVGALLNPLAFLVFIIAVAMATARFPFEIADYEGDVATGPYSDYGGVYLVLSFAGGTYYATFSYSLLASLVFLGGWAIPGYSAGPWPQDMFGHLLLAAWVLAKTGLVMFFYAFLRAAMPVLRLDHTLVLGWRGLFALGLAAVAWSAVLRLLGIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCW8</accession>
    <name>B1YCW8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0692</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350051.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCW8"/>
    <dbReference type="STRING" id="444157.Tneu_0692"/>
    <dbReference type="GeneID" id="6164724"/>
    <dbReference type="KEGG" id="tne:Tneu_0692"/>
    <dbReference type="eggNOG" id="arCOG05525">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2152713_0_0_2"/>
    <dbReference type="OrthoDB" id="27868at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="112" mass="12710" checksum="3D2333B21D96F2AE" modified="2008-05-20" version="1">MNLTLDSLSILAVVALGMLLTQRILHDYKLVAIFKRYPLPAVAKSGGIIDLEKLYIFVQNFSYRIETRGTVEVEVKNHMVRIVAGTGEVVINLEAWGYLDFYRVRRVVKVVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD13</accession>
    <name>B1YD13_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, PadR-like family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0737</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350096.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD13"/>
    <dbReference type="STRING" id="444157.Tneu_0737"/>
    <dbReference type="GeneID" id="6165173"/>
    <dbReference type="KEGG" id="tne:Tneu_0737"/>
    <dbReference type="eggNOG" id="arCOG00001">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063440_9_1_2"/>
    <dbReference type="OrthoDB" id="56053at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005149">
        <property type="entry name" value="Tscrpt_reg_PadR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43252">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR YQJI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43252:SF5">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR, PADR-LIKE FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03551">
        <property type="entry name" value="PadR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transcription regulator PadR N-terminal" evidence="1">
        <location>
            <begin position="21"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="100" mass="11546" checksum="39C7E67208FE8E11" modified="2008-05-20" version="1">MKAYLRFKRCIGRGNLWLYVVSILNRRGPLHGYGIIQELRQLGFGVSTVYGYVLLKRMVADGVLKEVEKDGKKLYIATDVAQENFRKALRELEDLVKRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD15</accession>
    <name>B1YD15_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">4Fe-4S ferredoxin-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0739</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HdrC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350098.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD15"/>
    <dbReference type="STRING" id="444157.Tneu_0739"/>
    <dbReference type="GeneID" id="6165180"/>
    <dbReference type="KEGG" id="tne:Tneu_0739"/>
    <dbReference type="eggNOG" id="arCOG00332">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005304_1_0_2"/>
    <dbReference type="OrthoDB" id="42878at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="entry name" value="Alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004017">
        <property type="entry name" value="Cys_rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051460">
        <property type="entry name" value="HdrC_iron-sulfur_subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43255:SF1">
        <property type="entry name" value="IRON-SULFUR-BINDING OXIDOREDUCTASE FADF-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43255">
        <property type="entry name" value="IRON-SULFUR-BINDING OXIDOREDUCTASE FADF-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02754">
        <property type="entry name" value="CCG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46548">
        <property type="entry name" value="alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="13"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="79"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="112"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="151"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="197"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="8">
        <location>
            <begin position="267"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="8">
        <location>
            <begin position="316"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="639" mass="72139" checksum="812ACFD0BEAB821B" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD58</accession>
    <name>B1YD58_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NADP oxidoreductase coenzyme F420-dependent</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0782</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the pyrroline-5-carboxylate reductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD58"/>
    <dbReference type="STRING" id="444157.Tneu_0782"/>
    <dbReference type="KEGG" id="tne:Tneu_0782"/>
    <dbReference type="eggNOG" id="arCOG00455">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042344_4_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004735">
        <property type="term" value="F:pyrroline-5-carboxylate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3730.10">
        <property type="entry name" value="ProC C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028939">
        <property type="entry name" value="P5C_Rdtase_cat_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029036">
        <property type="entry name" value="P5CR_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000304">
        <property type="entry name" value="Pyrroline-COOH_reductase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11645">
        <property type="entry name" value="PYRROLINE-5-CARBOXYLATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11645:SF0">
        <property type="entry name" value="PYRROLINE-5-CARBOXYLATE REDUCTASE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03807">
        <property type="entry name" value="F420_oxidored"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14748">
        <property type="entry name" value="P5CR_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000193">
        <property type="entry name" value="Pyrrol-5-carb_rd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="6-phosphogluconate dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyrroline-5-carboxylate reductase catalytic N-terminal" evidence="5">
        <location>
            <begin position="2"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="Pyrroline-5-carboxylate reductase dimerisation" evidence="6">
        <location>
            <begin position="131"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>NADPH</name>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="58"/>
            <end position="61"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000193-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF14748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="233" mass="25276" checksum="09F317CA83EF9178" modified="2008-05-20" version="1">MGAGKLGSQLALRLRGDGVRVIASVKTERSRQRLSALGLEAYTDNRPVVEGSDLLLLAVKPANLPELDFHVDKPLVSFVAGASTEALRRLSSRPYRAMTNVGLTAIAVAGPYDEEVNSVLSRIAPTFWVEERLIDPLTVLLGSGPAIVAELALALVRAGVNIGIPWDLSREVVLSLMASLPHLDERFTLEKLAQYVATPGGTTIKALLELYPAEAQLGRAVEEAYRRILEMRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="41" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD70</accession>
    <name>B1YD70_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0794</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350153.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD70"/>
    <dbReference type="STRING" id="444157.Tneu_0794"/>
    <dbReference type="GeneID" id="6164455"/>
    <dbReference type="KEGG" id="tne:Tneu_0794"/>
    <dbReference type="HOGENOM" id="CLU_2366330_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="95" mass="10152" checksum="0D8FAEAC87CD356B" modified="2008-05-20" version="1">MAVSVMVAVGGVYMKTGSVGIALYAGAFLGWAVYTLALVLGFLPVVGPILFWLTSDWIFSFVGVEPLPLLKIFGLVESIAVNAIVAFLIYALKQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD77</accession>
    <name>B1YD77_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0801</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350160.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD77"/>
    <dbReference type="STRING" id="444157.Tneu_0801"/>
    <dbReference type="GeneID" id="6164325"/>
    <dbReference type="KEGG" id="tne:Tneu_0801"/>
    <dbReference type="eggNOG" id="arCOG05548">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1375586_0_0_2"/>
    <dbReference type="OrthoDB" id="26658at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="190" mass="20883" checksum="633B506253C7F6F1" modified="2008-05-20" version="1">MSSGRRLVVLAVLLGAAALFATVSILNVTYWYVNTTAPPVIKYVGNDTYVMNGTFVKANWYYDPNTGLNITRVYVTGVPGDIVNITNALRVCNRYNVPVKIRLASVSMLQDYYPNNVYIRYMAVKLVSPTNSTDNQAVIVNEAVVDPSTGYVTLQPGQCAILGVDLTIDANAPYYQTLAAYQINIEKVPQ</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="93" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD98</accession>
    <name>LEUC_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">3-isopropylmalate dehydratase large subunit</fullName>
            <ecNumber evidence="1">4.2.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Alpha-IPM isomerase</fullName>
            <shortName evidence="1">IPMI</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Isopropylmalate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">leuC</name>
        <name type="ordered locus">Tneu_0824</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2R,3S)-3-isopropylmalate = (2S)-2-isopropylmalate</text>
            <dbReference type="Rhea" id="RHEA:32287"/>
            <dbReference type="ChEBI" id="CHEBI:1178"/>
            <dbReference type="ChEBI" id="CHEBI:35121"/>
            <dbReference type="EC" id="4.2.1.33"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="1">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 2/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterodimer of LeuC and LeuD.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the aconitase/IPM isomerase family. LeuC type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.33" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350181.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD98"/>
    <dbReference type="SMR" id="B1YD98"/>
    <dbReference type="STRING" id="444157.Tneu_0824"/>
    <dbReference type="GeneID" id="6164552"/>
    <dbReference type="KEGG" id="tne:Tneu_0824"/>
    <dbReference type="eggNOG" id="arCOG01698">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006714_3_4_2"/>
    <dbReference type="OrthoDB" id="255at2157"/>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003861">
        <property type="term" value="F:3-isopropylmalate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:L-leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.499.10">
        <property type="entry name" value="Aconitase, domain 3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01027">
        <property type="entry name" value="LeuC_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015931">
        <property type="entry name" value="Acnase/IPM_dHydase_lsu_aba_1/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001030">
        <property type="entry name" value="Acoase/IPM_deHydtase_lsu_aba"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018136">
        <property type="entry name" value="Aconitase_4Fe-4S_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036008">
        <property type="entry name" value="Aconitase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011826">
        <property type="entry name" value="HAcnase/IPMdehydase_lsu_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006251">
        <property type="entry name" value="Homoacnase/IPMdehydase_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050067">
        <property type="entry name" value="IPM_dehydratase_rel_enz"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01343">
        <property type="entry name" value="hacA_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02086">
        <property type="entry name" value="IPMI_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001614">
        <property type="entry name" value="PRK00402.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43822:SF2">
        <property type="entry name" value="HOMOACONITASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43822">
        <property type="entry name" value="HOMOACONITASE, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00330">
        <property type="entry name" value="Aconitase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00415">
        <property type="entry name" value="ACONITASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53732">
        <property type="entry name" value="Aconitase iron-sulfur domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01244">
        <property type="entry name" value="ACONITASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0004">4Fe-4S</keyword>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-0411">Iron-sulfur</keyword>
    <keyword id="KW-0432">Leucine biosynthesis</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000135737" description="3-isopropylmalate dehydratase large subunit">
        <location>
            <begin position="1"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="295"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="353"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="356"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01027"/>
        </source>
    </evidence>
    <sequence length="415" mass="44971" checksum="DA3BD87099688BD5" modified="2008-05-20" version="1">MPTWTEYIFQRKLGRAPSPGDVVEVVPDLVGFHDLTGYHVLEVLESMGKVEVFDKGRVVVAFDHLSPPPTQRAAEIMVYIRKHVKALGLPNFYDVGGGILHQIILEKYAMPEYVIFAADSHTNTAGAVGAFAHGMGATDIAAALKLGRTWVVVPAPFRVDVRGEFPPGVMGKDVALHLLKQFGAEGFNGYSVEVFVERPKAFPMDDRATVANMSTEMGADALMFIPDEVTADYLQRERGVSYKPPSLEPGRYVDRYEVELQRLEPLVAAPYSVDNVKAAREVEGVEVDQVFIGSCTNGRLSDFEVAARVLKRGRAKARCIAIPASYAVFRRAMELGYIDVLTKAGCVVTYGTCGPCLGGHFGVAGPGEVVVTTSNRNFKGRVGHPDSKVYLANPATAAAAALEGKIVDPRPYLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDA2</accession>
    <name>B1YDA2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptidase zinc-dependent</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0828</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350185.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDA2"/>
    <dbReference type="STRING" id="444157.Tneu_0828"/>
    <dbReference type="GeneID" id="6164437"/>
    <dbReference type="KEGG" id="tne:Tneu_0828"/>
    <dbReference type="eggNOG" id="arCOG00458">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108521_1_0_2"/>
    <dbReference type="OrthoDB" id="50281at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11375">
        <property type="entry name" value="Peptidase_M54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="entry name" value="Collagenase (Catalytic Domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012962">
        <property type="entry name" value="Pept_M54_archaemetzincn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012091">
        <property type="entry name" value="Pept_M54_archaemetzncn_arc/bac"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF033823">
        <property type="entry name" value="archmetzin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15910">
        <property type="entry name" value="ARCHAEMETZINCIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15910:SF1">
        <property type="entry name" value="ARCHAEMETZINCIN-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07998">
        <property type="entry name" value="Peptidase_M54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005785">
        <property type="entry name" value="Zn-prot_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55486">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="152" mass="17304" checksum="0AF7E92037431C78" modified="2008-05-20" version="1">MKPRLYIYAPSHIRPVDVPEFAAVWETAEVEIEEFLDRSRGQCRADEAVKKLAQRGQKPAVYVLDCDGYYPGFNYVFGLAAPELKTAVVFTARLRPALFESRLAKEITHEAGHLYGLGHCVNPRCVMYFNSIYDTDAKGVHFCETCRRKLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDB2</accession>
    <name>B1YDB2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Molybdopterin-guanine dinucleotide biosynthesis protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0838</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350195.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDB2"/>
    <dbReference type="STRING" id="444157.Tneu_0838"/>
    <dbReference type="GeneID" id="6164546"/>
    <dbReference type="KEGG" id="tne:Tneu_0838"/>
    <dbReference type="eggNOG" id="arCOG01872">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1044361_0_0_2"/>
    <dbReference type="OrthoDB" id="28434at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02503">
        <property type="entry name" value="MobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013482">
        <property type="entry name" value="Molybde_CF_guanTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19136">
        <property type="entry name" value="MOLYBDENUM COFACTOR GUANYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19136:SF81">
        <property type="entry name" value="MOLYBDENUM COFACTOR GUANYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MobA-like NTP transferase" evidence="8">
        <location>
            <begin position="7"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="266" mass="28930" checksum="82F4F6B9C80C80CD" modified="2008-05-20" version="1">MGGAVLVVLAGGLSSRFGRDKCTYVYGGRRLIDYVIEAGRPVAGRVAIAAGRNAALYPGEEVVEDSPRFSGPLAAVDSAVYRYEGPLLFAPCDTPFLKPAAFEGLLAARSPLAVWVYPSGRVESAVFKAEAKAARPILDLLARFGRGRIDDLFRVGETAFLSMERHGVDPAWFINVNKPADLEASAAVVKRRIYAEDNVVSWEEPPLVKWLMGGGLDPLRRELLRYLELGLFSMAAHVAKDLSRFIPAYEALAEALYEASGVEKAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDE3</accession>
    <name>B1YDE3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0869</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350226.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDE3"/>
    <dbReference type="GeneID" id="6164406"/>
    <dbReference type="KEGG" id="tne:Tneu_0869"/>
    <dbReference type="eggNOG" id="arCOG05693">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1891508_0_0_2"/>
    <dbReference type="OrthoDB" id="27542at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="134" mass="15174" checksum="7A9B80FB658799FC" modified="2008-05-20" version="1">MSWVEKFLNDAEKMFQIPRSELEKFVAYMAEDPTKVEEWAERLQLSEPDFLMLTTVYTLYKTEDRVIELLSDVELKVDEAIGFISTAAANLLNALPPEDRKPILAQLVLAIALQVEDPGVRNSLAEYAKALLAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDJ3</accession>
    <name>B1YDJ3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0919</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the SAM hydrolase / SAM-dependent halogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350276.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDJ3"/>
    <dbReference type="GeneID" id="6164591"/>
    <dbReference type="KEGG" id="tne:Tneu_0919"/>
    <dbReference type="eggNOG" id="arCOG04309">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059734_0_0_2"/>
    <dbReference type="OrthoDB" id="372224at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.90">
        <property type="entry name" value="Bacterial fluorinating enzyme like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10790">
        <property type="entry name" value="S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046470">
        <property type="entry name" value="SAM_HAT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046469">
        <property type="entry name" value="SAM_HAT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002747">
        <property type="entry name" value="SAM_OH_AdoTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023227">
        <property type="entry name" value="SAM_OH_AdoTrfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023228">
        <property type="entry name" value="SAM_OH_AdoTrfase_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35092">
        <property type="entry name" value="CHLORINASE MJ1651"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35092:SF1">
        <property type="entry name" value="CHLORINASE MJ1651"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20257">
        <property type="entry name" value="SAM_HAT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01887">
        <property type="entry name" value="SAM_HAT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006779">
        <property type="entry name" value="UCP006779"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101852">
        <property type="entry name" value="Bacterial fluorinating enzyme, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102522">
        <property type="entry name" value="Bacterial fluorinating enzyme, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="S-adenosyl-l-methionine hydroxide adenosyltransferase N-terminal" evidence="3">
        <location>
            <begin position="6"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="S-adenosyl-l-methionine hydroxide adenosyltransferase C-terminal" evidence="4">
        <location>
            <begin position="170"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00024035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF20257"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="258" mass="27980" checksum="E85B0A3779DD514B" modified="2008-05-20" version="1">MERPLIALLTDFGRDYFVAAMKGVILSINPRAQIVDITHDVPPQDVQTGAFVLKAVYRWFPRGTIFVAVVDPGVGTERAPLLLKTRGYLFVGPDNGLLAPAAEEDGVLEAYRIGVGLPQLSKTFHGRDVFAPAAAYLSLGVEPRLLGTPVAQWRRLEIPEARVEDGVVYGRVVYVDRFGNVYTSARSLPGAAYGDVLCVETPRGVLRARYVETYGRAAPGDAVLLINSEGYLELAVVMGNAASAYGLKTGDEVKIRRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDJ7</accession>
    <name>B1YDJ7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0923</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350280.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDJ7"/>
    <dbReference type="STRING" id="444157.Tneu_0923"/>
    <dbReference type="GeneID" id="6164340"/>
    <dbReference type="KEGG" id="tne:Tneu_0923"/>
    <dbReference type="eggNOG" id="arCOG05710">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117974_0_0_2"/>
    <dbReference type="OrthoDB" id="10147at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="191" mass="21250" checksum="FFEC41D0AF8C735A" modified="2008-05-20" version="1">MSFEKNLLERIASYIPGYVGYKEKEVRRETDALVRRHVASILSAAAAQLTLSPTEARAVAANPEARFLWDSVKAALDKVAQKIDKAQHGYSGFFDLAKVDESVLEEVYRHDLALVETAKRVAEAASSLKALRPLSQEWLDALRQILAQLQSLDSAVDERSRILDAIKTPPQPQWESGGRKRGLLDRLLGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDK4</accession>
    <name>B1YDK4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminotransferase class I and II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350287.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDK4"/>
    <dbReference type="STRING" id="444157.Tneu_0930"/>
    <dbReference type="GeneID" id="6164533"/>
    <dbReference type="KEGG" id="tne:Tneu_0930"/>
    <dbReference type="eggNOG" id="arCOG04334">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_4_4_2"/>
    <dbReference type="OrthoDB" id="33635at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00609">
        <property type="entry name" value="AAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II_large"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43510">
        <property type="entry name" value="AMINOTRANSFERASE FUNCTION, HYPOTHETICAL (EUROFUNG)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43510:SF1">
        <property type="entry name" value="AMINOTRANSFERASE FUNCTION, HYPOTHETICAL (EUROFUNG)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotransferase class I/classII large" evidence="1">
        <location>
            <begin position="46"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="312" mass="34187" checksum="55B117E5BB1067C0" modified="2008-05-20" version="1">MFKWIRERPAEYDLASSGVAKIEVEPADEPPVGEILTSLYRISPRELALTAGAQEGLFLAFHAVRPKAVVTVAPEYEPIWRLPGAMGVRHVEVRDVWEAPLGPETALVFSNPNNPTGRFLGRGELRELADEARRRGAVLIVDIIFSDFVTDDLGGLPLENAVYVHSTDKFYTSDYRLGWAFGDSRIVEKIRALKDLANPGPRDLEKRAAAALLSRREEVKRRNLAVIDKNAAALLSAFPNAIYNPHMPIALVEVGCDDVAFAEGLLKRGVKVMPGTFMKAPRAVRVGLGVEPPPRFTQALGILGEAAGNCRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDR4</accession>
    <name>B1YDR4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CRISPR-associated protein Cas5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0995</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350347.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDR4"/>
    <dbReference type="STRING" id="444157.Tneu_0995"/>
    <dbReference type="GeneID" id="6165784"/>
    <dbReference type="KEGG" id="tne:Tneu_0995"/>
    <dbReference type="eggNOG" id="arCOG02671">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1006921_0_0_2"/>
    <dbReference type="OrthoDB" id="373752at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053725">
        <property type="entry name" value="CRISPR_Cas5_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="260" mass="28969" checksum="80779990DEC45E9C" modified="2008-05-20" version="1">MMLVKLDFFSPFVSKPAFLEHGAGPLLPPPTTLLGALGAVAVRPEERFYAPRADFVLFWAPPYTEGVGLYRHYTLMTQKRTRLEKLPKAIEAVLKGREDEVVESGMTARSLIQNFLGVGSRREVYFWGPAYLLVSGGEAEKLAPYIYRVGQKEGLIAATPLRFAVEDLGAREVETRFYIPAGWASECVAVPYYGQVTAQCREEYFFDPRLGLNAERQPFYIPPPMGHIKVRPAKGYTAVKIVPEAGSDLYAILPRGYAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDS2</accession>
    <name>B1YDS2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1003</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350355.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDS2"/>
    <dbReference type="STRING" id="444157.Tneu_1003"/>
    <dbReference type="GeneID" id="6164841"/>
    <dbReference type="KEGG" id="tne:Tneu_1003"/>
    <dbReference type="eggNOG" id="arCOG05419">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_155006_0_0_2"/>
    <dbReference type="OrthoDB" id="29267at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="114" mass="11988" checksum="8916A7BBF7E78E6E" modified="2008-05-20" version="1">MDLLRVGVALVGVALLIIALVALAFYLDVRGRVGGPQVPFSAFCYEGYVVVSAYVDLRNVTVADGSGRVLCAFDFLRAGSERVCRVGNGTVAVVEAGGYSRVVVCPGPPRPVRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDT0</accession>
    <name>B1YDT0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1011</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350363.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDT0"/>
    <dbReference type="STRING" id="444157.Tneu_1011"/>
    <dbReference type="GeneID" id="6165022"/>
    <dbReference type="KEGG" id="tne:Tneu_1011"/>
    <dbReference type="eggNOG" id="arCOG01072">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040940_5_3_2"/>
    <dbReference type="OrthoDB" id="40462at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010945">
        <property type="term" value="F:coenzyme A diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.79.10">
        <property type="entry name" value="Nucleoside Triphosphate Pyrophosphohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045121">
        <property type="entry name" value="CoAse"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12992:SF11">
        <property type="entry name" value="MITOCHONDRIAL COENZYME A DIPHOSPHATASE NUDT8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12992">
        <property type="entry name" value="NUDIX HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="Nudix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0464">Manganese</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="7">
        <location>
            <begin position="11"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="157" mass="17093" checksum="5C6E4844D9CC4FD9" modified="2008-05-20" version="1">MCLTGVGYAGGPGWAAVGVLLRGREVLLIRRVERDGDPWSGHVAFPGGMWRPGEDLLGTAVREVEEEVSVRATDAAGALPPLSPGNAPWLKVVPFIFTGWAGEPRPNPREVGEARWVGVDELRETVWRGHAAFEAGGWIIWGLTYRILKRLIDCGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDV1</accession>
    <name>B1YDV1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Daunorubicin resistance ABC transporter ATPase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1033</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350384.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDV1"/>
    <dbReference type="STRING" id="444157.Tneu_1033"/>
    <dbReference type="GeneID" id="6164982"/>
    <dbReference type="KEGG" id="tne:Tneu_1033"/>
    <dbReference type="eggNOG" id="arCOG00194">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="31298at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050763">
        <property type="entry name" value="ABC_transporter_ATP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025302">
        <property type="entry name" value="DrrA1/2-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42711">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42711:SF5">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN NATA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13732">
        <property type="entry name" value="DrrA1-3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="317" mass="34569" checksum="296337B766061FCA" modified="2008-05-20" version="1">MEAVKAEGLVKRYGDVVALDGVSFSVGRGEVFGLLGPNGAGKTTTIKILTGLTKPTAGRAWVAGFDVVEQGLEVKRRIGWISSEVILDDDLTAWENLEIQARLMGVRGWRERAAELLKAFGIYEAAGRPVGKFSTGMRKRLEVAMALLHGPEVLFMDEPTVGLDVGARLGFWEVVRQINREFGVTVLLTTHYMEEAESLCRRIAILNRGRIAALGAPDELKAKYGVDVIELEVPGPVDLAKLSRFGEAAAADGKVVVKVANAEEVLADVVKAVEGVKAVRVRKTSLETVFINLTGATFEGEHIDVKKLYMKIRRARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDV8</accession>
    <name>B1YDV8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PIN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1040</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350391.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDV8"/>
    <dbReference type="STRING" id="444157.Tneu_1040"/>
    <dbReference type="GeneID" id="6164965"/>
    <dbReference type="KEGG" id="tne:Tneu_1040"/>
    <dbReference type="eggNOG" id="arCOG05501">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1830664_0_0_2"/>
    <dbReference type="OrthoDB" id="26712at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="136" mass="15363" checksum="BD3045619B34AFF3" modified="2008-05-20" version="1">MEARGRKGRFRLEPDAPQRYRRIYVDLFSIAAALSSPEEVFRSAAESGLDAVFVLDAWSETHLPLARRYMELCRRYNLDCRLAERGPAELYAVELCEAECGRGCAVVTRDYDAAKAAATCAVLIQRGGRFYRATYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDW4</accession>
    <name>B1YDW4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1046</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0251 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350397.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDW4"/>
    <dbReference type="STRING" id="444157.Tneu_1046"/>
    <dbReference type="GeneID" id="6164742"/>
    <dbReference type="KEGG" id="tne:Tneu_1046"/>
    <dbReference type="eggNOG" id="arCOG02238">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094511_2_0_2"/>
    <dbReference type="OrthoDB" id="31580at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002852">
        <property type="entry name" value="UPF0251"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37478">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37478:SF2">
        <property type="entry name" value="UPF0251 PROTEIN TK0562"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02001">
        <property type="entry name" value="DUF134"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="Sigma3 and sigma4 domains of RNA polymerase sigma factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="10"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="110" mass="12541" checksum="3ACB6CED4587604F" modified="2008-05-20" version="1">MGHRRRHRWGHAGAKTRPTPTLPHEETLYIPLREAPGLRPTHYVELCSYELEAMYLIHVAGLTTEEAAQKIGVSKATLWRILEQARHKVAKALTERLPLKLVSCRDGEPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDY1</accession>
    <name>B1YDY1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Cytochrome b561 bacterial/Ni-hydrogenase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1063</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350413.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDY1"/>
    <dbReference type="STRING" id="444157.Tneu_1063"/>
    <dbReference type="GeneID" id="6164411"/>
    <dbReference type="KEGG" id="tne:Tneu_1063"/>
    <dbReference type="eggNOG" id="arCOG05636">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1154387_0_0_2"/>
    <dbReference type="OrthoDB" id="24065at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009326">
        <property type="term" value="C:formate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036397">
        <property type="term" value="F:formate dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009061">
        <property type="term" value="P:anaerobic respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015944">
        <property type="term" value="P:formate oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.950.20">
        <property type="entry name" value="Transmembrane di-heme cytochromes, Chain C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011577">
        <property type="entry name" value="Cyt_b561_bac/Ni-Hgenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051817">
        <property type="entry name" value="FDH_cytochrome_b556_subunit"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30074">
        <property type="entry name" value="FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, CYTOCHROME B556 FDN SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30074:SF5">
        <property type="entry name" value="FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, CYTOCHROME B556(FDN) SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01292">
        <property type="entry name" value="Ni_hydr_CYTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="Transmembrane di-heme cytochromes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="23"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="77"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="139"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="180"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome b561 bacterial/Ni-hydrogenase" evidence="7">
        <location>
            <begin position="16"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="240" mass="27459" checksum="427ACDCB467FDB99" modified="2008-05-20" version="1">MRPLIKTEGGKEYVLRFKPATQIAHLFLLVGMTISFITGLPMFFKFGEVNIFEGLGAALGLPAPHTSSQLISILHDWVGPILMLIGVLIVLAASDKRAGLREITKFGEALRVFKEVAEYRLGRRKEYPPTPFYHPFQVMWVWGVILGLLLLGVSGLFLVVEKWFYMQILPPWWRGFMSLLHIFGAFIFYVALPIHFIMSIFPTNWPMLKSQLLAKGYVPIEWWMAHHKAYVEEVKKRGGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDY9</accession>
    <name>B1YDY9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF3782 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1071</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350421.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDY9"/>
    <dbReference type="STRING" id="444157.Tneu_1071"/>
    <dbReference type="GeneID" id="6165078"/>
    <dbReference type="KEGG" id="tne:Tneu_1071"/>
    <dbReference type="eggNOG" id="arCOG01422">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064028_1_0_2"/>
    <dbReference type="OrthoDB" id="28088at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024271">
        <property type="entry name" value="DUF3782"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012431">
        <property type="entry name" value="PDDEXK_10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34314">
        <property type="entry name" value="CRENARCHAEAL PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34314:SF7">
        <property type="entry name" value="DUF3782 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12644">
        <property type="entry name" value="DUF3782"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07788">
        <property type="entry name" value="PDDEXK_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="41"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="103"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="317" mass="36761" checksum="D49A611F2DA6B33C" modified="2008-05-20" version="1">MSVAEEVRRVLLEHPEIIAEAIEARPEVLYRALARLTPWQNLATKEDVRSLREEMQKIEEKMATKDDIKDLEARMATREDVRRLEEQVGEVRKVMATKDDLKAFATREDVRRLEEQLDEVRRVMATKEDLKGLATKEELKALEERMATKEDLKALATREELRGLEERMATKRDVEELWRAINRLERKLDALGARWGVISEEAFREGMRAMLREAGWSVSKEVLYDREGYVYGTPSEVDYDVVVRDGRLIIVEITSSLKRSDLPTIVKKRELYERARGAKVAAVYVVTPYIDDRYPERVKAMAKDLGLEVVYPAPPQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDZ8</accession>
    <name>B1YDZ8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GTP cyclohydrolase I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1080</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350430.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDZ8"/>
    <dbReference type="STRING" id="444157.Tneu_1080"/>
    <dbReference type="GeneID" id="6165852"/>
    <dbReference type="KEGG" id="tne:Tneu_1080"/>
    <dbReference type="eggNOG" id="arCOG04210">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_173771_0_0_2"/>
    <dbReference type="OrthoDB" id="25903at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033739">
        <property type="term" value="F:preQ1 synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:tRNA queuosine(34) biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043133">
        <property type="entry name" value="GTP-CH-I_C/QueF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050084">
        <property type="entry name" value="NADPH_dep_7-cyano-7-deazaG_red"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029500">
        <property type="entry name" value="QueF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34354">
        <property type="entry name" value="NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34354:SF1">
        <property type="entry name" value="NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14489">
        <property type="entry name" value="QueF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55620">
        <property type="entry name" value="Tetrahydrobiopterin biosynthesis enzymes-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="114" mass="12624" checksum="5D0DBA13C872A696" modified="2008-05-20" version="1">MAHQPVLKLSRSPTLVRLKTRGEAVCPISKVVDSFEVTVEYMPRGGALAIEEFKRMVDSYRGREILHEELAVDLMEKIKAAVNPPYVKVVLKSVYIGVEVEVVAESGGVPPVYI</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="94" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE08</accession>
    <name>EF2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Elongation factor 2</fullName>
            <shortName evidence="1">EF-2</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">fusA</name>
        <name type="ordered locus">Tneu_1090</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350440.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE08"/>
    <dbReference type="SMR" id="B1YE08"/>
    <dbReference type="STRING" id="444157.Tneu_1090"/>
    <dbReference type="GeneID" id="6165525"/>
    <dbReference type="KEGG" id="tne:Tneu_1090"/>
    <dbReference type="eggNOG" id="arCOG01559">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002794_11_1_2"/>
    <dbReference type="OrthoDB" id="6290at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01681">
        <property type="entry name" value="aeEF2_snRNP_like_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01885">
        <property type="entry name" value="EF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd16268">
        <property type="entry name" value="EF2_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd16261">
        <property type="entry name" value="EF2_snRNP_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01514">
        <property type="entry name" value="Elongation_Factor_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.230.10:FF:000009">
        <property type="entry name" value="116 kDa U5 small nuclear ribonucleoprotein component"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.240:FF:000010">
        <property type="entry name" value="Elongation factor 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.870:FF:000002">
        <property type="entry name" value="Translation elongation factor 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.870">
        <property type="entry name" value="Elongation Factor G (Translational Gtpase), domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00054_A">
        <property type="entry name" value="EF_G_EF_2_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041095">
        <property type="entry name" value="EFG_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribsml_uS5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004543">
        <property type="entry name" value="Transl_elong_EFG/EF2_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005517">
        <property type="entry name" value="Transl_elong_EFG/EF2_IV"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00490">
        <property type="entry name" value="aEF-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42908:SF3">
        <property type="entry name" value="ELONGATION FACTOR-LIKE GTPASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42908">
        <property type="entry name" value="TRANSLATION ELONGATION FACTOR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14492">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03764">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00889">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="EF-G C-terminal domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0251">Elongation factor</keyword>
    <keyword id="KW-0342">GTP-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000091772" description="Elongation factor 2">
        <location>
            <begin position="1"/>
            <end position="740"/>
        </location>
    </feature>
    <feature type="domain" description="tr-type G">
        <location>
            <begin position="23"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="32"/>
            <end position="39"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="98"/>
            <end position="102"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="152"/>
            <end position="155"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="Diphthamide" evidence="1">
        <location>
            <position position="605"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00054"/>
        </source>
    </evidence>
    <sequence length="740" mass="83056" checksum="C67AE5E7548E5AD4" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE21</accession>
    <name>B1YE21_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1103</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE21"/>
    <dbReference type="KEGG" id="tne:Tneu_1103"/>
    <dbReference type="eggNOG" id="arCOG10103">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_217438_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="39" mass="4749" checksum="40B235BB1EBB91B4" modified="2008-05-20" version="1">MTELKYAQAGDEEVLQMIRQRLREMRQLLAEIREMLKVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE41</accession>
    <name>B1YE41_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1123</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE41"/>
    <dbReference type="STRING" id="444157.Tneu_1123"/>
    <dbReference type="KEGG" id="tne:Tneu_1123"/>
    <dbReference type="eggNOG" id="arCOG10204">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_352196_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="279"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="333"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="366"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="398"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="433"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="463"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="499"/>
            <end position="521"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="756"/>
            <end position="773"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="798" mass="87707" checksum="FA0112567357955E" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="38" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8L1</accession>
    <name>B1Y8L1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1161</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350509.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8L1"/>
    <dbReference type="STRING" id="444157.Tneu_1161"/>
    <dbReference type="GeneID" id="6166203"/>
    <dbReference type="KEGG" id="tne:Tneu_1161"/>
    <dbReference type="HOGENOM" id="CLU_1227698_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="166"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="197"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="225" mass="24058" checksum="40B0308B68A3BC83" modified="2008-05-20" version="1">MRRDPITDLLQRAQAEAVRSQIANVLLYMLQEGRRMLDAPVEGRPVSIVRQSLNCEGREAVFAVNAGGAPLTAVVRWIAAPGAAEVFFSDGVRFEGNLLRDPCRGLELDLAPQLSFVALFLLAFIFGAPSLPPLALGVLLAVLASVIKAVYAVAAQGRSTPAGWALTLVLSFIAGFAAGLVYVFAVPKPLADVFPKLDPAAAAVLLSLLAAVYYLPHVAWRKLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8M2</accession>
    <name>B1Y8M2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">N-(5'-phosphoribosyl)anthranilate isomerase</fullName>
            <shortName evidence="8">PRAI</shortName>
            <ecNumber evidence="8">5.3.1.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">trpF</name>
        <name evidence="10" type="ordered locus">Tneu_1172</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>N-(5-phospho-beta-D-ribosyl)anthranilate = 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:21540"/>
            <dbReference type="ChEBI" id="CHEBI:18277"/>
            <dbReference type="ChEBI" id="CHEBI:58613"/>
            <dbReference type="EC" id="5.3.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the TrpF family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.24" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350520.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8M2"/>
    <dbReference type="STRING" id="444157.Tneu_1172"/>
    <dbReference type="GeneID" id="6165287"/>
    <dbReference type="KEGG" id="tne:Tneu_1172"/>
    <dbReference type="eggNOG" id="arCOG01983">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076364_3_0_2"/>
    <dbReference type="OrthoDB" id="27513at2157"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00042"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004640">
        <property type="term" value="F:phosphoribosylanthranilate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:L-tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00405">
        <property type="entry name" value="PRAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00135">
        <property type="entry name" value="PRAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001240">
        <property type="entry name" value="PRAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044643">
        <property type="entry name" value="TrpF_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42894">
        <property type="entry name" value="N-(5'-PHOSPHORIBOSYL)ANTHRANILATE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42894:SF1">
        <property type="entry name" value="N-(5'-PHOSPHORIBOSYL)ANTHRANILATE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00697">
        <property type="entry name" value="PRAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="Ribulose-phoshate binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 8" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7 8 10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="N-(5'phosphoribosyl) anthranilate isomerase (PRAI)" evidence="9">
        <location>
            <begin position="13"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="219" mass="23052" checksum="520FEBF5C82146A1" modified="2008-05-20" version="1">MFIVLFSHSLVLVKICGVARPEDVELLDGLVDYIGFIVEPSSPRSVEPRRLGGLARLVRESRPVLVTASLPPAEAVDLAASLGIPVVQHHGSLGDGHFSYAEERGVALAPVAVYRRGADLRAAVSQLLSKPHEYVLVDAEKGSGERFEGGLKIPLHVLAEVAHMGKVALAGGITPENAHLVAALRPYMVDVASGVESSPGVKDPGKVKALLRALGRLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8M8</accession>
    <name>B1Y8M8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">anthranilate synthase</fullName>
            <ecNumber evidence="3">4.1.3.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1178</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>chorismate + L-glutamine = anthranilate + pyruvate + L-glutamate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21732"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="4.1.3.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 1/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the anthranilate synthase component I family.</text>
    </comment>
    <dbReference type="EC" id="4.1.3.27" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350526.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8M8"/>
    <dbReference type="STRING" id="444157.Tneu_1178"/>
    <dbReference type="GeneID" id="6165099"/>
    <dbReference type="KEGG" id="tne:Tneu_1178"/>
    <dbReference type="eggNOG" id="arCOG02014">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006493_7_1_2"/>
    <dbReference type="OrthoDB" id="25514at2157"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004049">
        <property type="term" value="F:anthranilate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:L-tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.120.10">
        <property type="entry name" value="Anthranilate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005801">
        <property type="entry name" value="ADC_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019999">
        <property type="entry name" value="Anth_synth_I-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015890">
        <property type="entry name" value="Chorismate_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11236">
        <property type="entry name" value="AMINOBENZOATE/ANTHRANILATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11236:SF9">
        <property type="entry name" value="ANTHRANILATE SYNTHASE COMPONENT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00425">
        <property type="entry name" value="Chorismate_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00095">
        <property type="entry name" value="ANTSNTHASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56322">
        <property type="entry name" value="ADC synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="Chorismate-utilising enzyme C-terminal" evidence="6">
        <location>
            <begin position="158"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00047683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="422" mass="46591" checksum="A91F76A877B09BEB" modified="2008-05-20" version="1">MKIPLSKLPPPRDLAHGLYQSGEEFVALLESGQGFAERARFTLVAWGVERAYVSSGPDLQQVLYSAQRELRADGGPFGGDVLIGALTYEASYYVEPLLLRYNKVDRSIPAAFLVKPRGYILYDKMLGRGYLRGEMPRVSVGRGEARVRGPVAMTDPGRFKSWVAEGRERIAAGEILQVVLSRWVDYRAEGDLFPLYKALAEGNPSPYMYFVKYGDIHLIGTSPELLVKVQGGRVETHPIAGTRPRGATEEEDLALEEDMLSDEKELAEHIMLVDLARNDIGRVCQLGSVKVEELFAVEKYSRVQHIVSRVMGVMDRRFTPVDALLATHPAGTVSGAPKVRAMEIIAELEDEPRRFYAGAVGFMSPSLLEFAIVIRTMVAVGDSLRIQAGAGVVYDSTPEREFRETESKLAALKAVVEGGPWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Q0</accession>
    <name>B1Y8Q0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1201</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350548.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Q0"/>
    <dbReference type="STRING" id="444157.Tneu_1201"/>
    <dbReference type="GeneID" id="6165079"/>
    <dbReference type="KEGG" id="tne:Tneu_1201"/>
    <dbReference type="eggNOG" id="arCOG00491">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2115604_0_0_2"/>
    <dbReference type="OrthoDB" id="28329at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="106" mass="11751" checksum="A0678260F2AF7EE4" modified="2008-05-20" version="1">MDISTSSIDELVLEYFRRLEERGLGRWVDEVFPTSSRLDRVRELAGRSAEDAVEALAGEIAGKIVAEVAAEVVGAPAETAVWLLARRIALWYLQLAVELGVVRARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Q9</accession>
    <name>B1Y8Q9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1211</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350557.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Q9"/>
    <dbReference type="STRING" id="444157.Tneu_1211"/>
    <dbReference type="GeneID" id="6166274"/>
    <dbReference type="KEGG" id="tne:Tneu_1211"/>
    <dbReference type="eggNOG" id="arCOG05618">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2461886_0_0_2"/>
    <dbReference type="OrthoDB" id="27879at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="89" mass="9933" checksum="ED7B7AF3B4C17897" modified="2008-05-20" version="1">MRLELALIPMIFAVAVSTLAFIKPIQIYRVDLSPLFIYWPEALRYAEMGDPTAVYRVTGLVRCSASGPIEAPPGVAYRALNLSCRFSPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8S1</accession>
    <name>B1Y8S1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1223</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350569.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8S1"/>
    <dbReference type="STRING" id="444157.Tneu_1223"/>
    <dbReference type="GeneID" id="6166186"/>
    <dbReference type="KEGG" id="tne:Tneu_1223"/>
    <dbReference type="eggNOG" id="arCOG05608">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1182916_0_0_2"/>
    <dbReference type="OrthoDB" id="26046at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009898">
        <property type="term" value="C:cytoplasmic side of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051782">
        <property type="term" value="P:negative regulation of cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050625">
        <property type="entry name" value="ParA/MinD_ATPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43384:SF10">
        <property type="entry name" value="ATPASE INVOLVED IN CHROMOSOME PARTITIONING, PARA_MIND FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43384">
        <property type="entry name" value="SEPTUM SITE-DETERMINING PROTEIN MIND HOMOLOG, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="234" mass="26490" checksum="534C4BCFEE7884A5" modified="2008-05-20" version="1">MRPIKLVLISSLDGGVGKTTLASVLAVAKGYTLLVDMDWEKADLSQLFRAPRRPGWLAPFLKGGAPYVHRISPVLYLMPGYEAFELYQRLGEDVVKDFGEAMLEWMSYMPKFVTKLRIPVDTVVVDTTAALRAELLSKLQSAGVYNIFMADRRLISRISDIKAEQYRRYMAYSALVVVNMVEKDEVKLARKIAPVVLKRVAISEYYGESVASSVLRDRENRRSVEHIVTRIKLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8U8</accession>
    <name>B1Y8U8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1250</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350596.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8U8"/>
    <dbReference type="STRING" id="444157.Tneu_1250"/>
    <dbReference type="GeneID" id="6166034"/>
    <dbReference type="KEGG" id="tne:Tneu_1250"/>
    <dbReference type="eggNOG" id="arCOG05677">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_475412_0_0_2"/>
    <dbReference type="OrthoDB" id="28375at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="588" mass="63884" checksum="93B02D0C0088C6AA" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8W9</accession>
    <name>B1Y8W9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0033 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1271</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350617.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8W9"/>
    <dbReference type="STRING" id="444157.Tneu_1271"/>
    <dbReference type="GeneID" id="6165979"/>
    <dbReference type="KEGG" id="tne:Tneu_1271"/>
    <dbReference type="eggNOG" id="arCOG02071">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2748346_0_0_2"/>
    <dbReference type="OrthoDB" id="45650at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00291">
        <property type="entry name" value="SirA_YedF_YeeD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.40">
        <property type="entry name" value="TusA-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001455">
        <property type="entry name" value="TusA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036868">
        <property type="entry name" value="TusA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01206">
        <property type="entry name" value="TusA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64307">
        <property type="entry name" value="SirA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UPF0033" evidence="1">
        <location>
            <begin position="3"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="71" mass="7864" checksum="603BCBB0EAAA1753" modified="2008-05-20" version="1">MEVIDVSGMQCPDPLRKVASVLASAPPGSRYRIVTDDYVCYVMLRRLMAVNDVKIVEADEGGPYALVVEKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="43" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8X6</accession>
    <name>B1Y8X6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Family 453</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1278</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350624.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8X6"/>
    <dbReference type="STRING" id="444157.Tneu_1278"/>
    <dbReference type="GeneID" id="6165854"/>
    <dbReference type="KEGG" id="tne:Tneu_1278"/>
    <dbReference type="eggNOG" id="arCOG03757">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2103604_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="97" mass="11520" checksum="10E5D8FA377A3D6D" modified="2008-05-20" version="1">MDAVELFREFYLSLGMPLRAIIEYRMRRRGATVSDLFERPYLLYFYVSQDLGPHNAELIVNLFVDFARRRRIDSKVAGEALRSPDGWRRFVQYLEGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Z3</accession>
    <name>B1Y8Z3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TatD-related deoxyribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350641.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Z3"/>
    <dbReference type="STRING" id="444157.Tneu_1295"/>
    <dbReference type="GeneID" id="6165646"/>
    <dbReference type="KEGG" id="tne:Tneu_1295"/>
    <dbReference type="eggNOG" id="arCOG00891">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031506_5_2_2"/>
    <dbReference type="OrthoDB" id="26412at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01310">
        <property type="entry name" value="TatD_DNAse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.140">
        <property type="entry name" value="Metal-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001130">
        <property type="entry name" value="TatD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46124">
        <property type="entry name" value="D-AMINOACYL-TRNA DEACYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46124:SF2">
        <property type="entry name" value="D-AMINOACYL-TRNA DEACYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01026">
        <property type="entry name" value="TatD_DNase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005902">
        <property type="entry name" value="DNase_TatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="Metallo-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <position position="5"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR005902-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="234" mass="27077" checksum="90F2392D457F228B" modified="2008-05-20" version="1">MFDNHVHCHEFPREELEGYTREWTLVCVSDDLATSKRTAELRGAVRCVGIHPWQVDKAEPGDLEAVVRLAEKAEVPCVGEVGLDRRFVPQTFDKQREFFRAFLRLARELDLVVNVHAPDAWADVVEELRRADVDRALIHWYTGPLDLLETIRDLGYYISINPAVVIQKKHQEVAKVADRRIVLLESDGPYEYRGMRLAPPLINKTVEKLAELWESPRDQVVETVESNARRLWRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y914</accession>
    <name>B1Y914_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1316</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350662.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y914"/>
    <dbReference type="STRING" id="444157.Tneu_1316"/>
    <dbReference type="GeneID" id="6166160"/>
    <dbReference type="KEGG" id="tne:Tneu_1316"/>
    <dbReference type="eggNOG" id="arCOG00259">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_867717_0_0_2"/>
    <dbReference type="OrthoDB" id="28636at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06580">
        <property type="entry name" value="TM_PBP1_transp_TpRbsC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47089">
        <property type="entry name" value="ABC TRANSPORTER, PERMEASE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47089:SF1">
        <property type="entry name" value="GUANOSINE ABC TRANSPORTER PERMEASE PROTEIN NUPP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="99"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="125"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="164"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="211"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="250"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="291"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="321" mass="33475" checksum="32EBFECE84B12D99" modified="2008-05-20" version="1">MRLIQRKAPSPLAYPLAFAGSLATVLLVVFAASGDVDTAIGVLSRVDLGFLARVFVVVGLVGLSGVLSYRSGLWNIGQEGQAIVGTLAAVSAKNAAEGLLLAAAAAGAWTAVPALLRSFLGVNEAVTTFLTALAAVYVARYFVETVLKDPTKKGFVVTVEAPPMAVVYAELLLLAVLTAVVVLYTSRFGLGLRLLASGEDVARYAGGRPRLLVFTAIVLSGVVAGLAGAVEIMTRDSGRYLTLQQVSSGFGLYGIAAAWLGGLHPLGVAVSSLYIAWLYEVAVNLKTAANFPALVANALIGIALLWGLAGHLLYKYRVVWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y934</accession>
    <name>B1Y934_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Flavin reductase domain protein FMN-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1337</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350682.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y934"/>
    <dbReference type="GeneID" id="6165162"/>
    <dbReference type="KEGG" id="tne:Tneu_1337"/>
    <dbReference type="eggNOG" id="arCOG02018">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1773278_0_0_2"/>
    <dbReference type="OrthoDB" id="25685at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="entry name" value="Electron Transport, Fmn-binding Protein, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50475">
        <property type="entry name" value="FMN-binding split barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin reductase like" evidence="2">
        <location>
            <begin position="12"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="146" mass="16000" checksum="2D3D52C6DF4EFA6C" modified="2008-05-20" version="1">MSINVACENSPLPTPVLVVVVADHGAVVGWPLVIPGEPPTVAIPLHKNRKTLELIRRHRVFSVNLVKDADRAYEVFGKPGERKLERWGSVAPCRALPCLTLGDASRAVECLYQGEHDVGDHVIVFCSAVASYGCGDYAVWDPCRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y964</accession>
    <name>B1Y964_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">tRNA methyltransferase complex GCD14 subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1367</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350712.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y964"/>
    <dbReference type="STRING" id="444157.Tneu_1367"/>
    <dbReference type="GeneID" id="6164662"/>
    <dbReference type="KEGG" id="tne:Tneu_1367"/>
    <dbReference type="eggNOG" id="arCOG00978">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025402_0_1_2"/>
    <dbReference type="OrthoDB" id="30774at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031515">
        <property type="term" value="C:tRNA (m1A) methyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0160107">
        <property type="term" value="F:tRNA (adenine(58)-N1)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030488">
        <property type="term" value="P:tRNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.330.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049470">
        <property type="entry name" value="TRM61_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014816">
        <property type="entry name" value="tRNA_MeTrfase_Gcd14"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12133">
        <property type="entry name" value="TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12133:SF1">
        <property type="entry name" value="TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08704">
        <property type="entry name" value="GCD14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017269">
        <property type="entry name" value="GCD14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51620">
        <property type="entry name" value="SAM_TRM61"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61 C-terminal" evidence="6">
        <location>
            <begin position="76"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="106"/>
            <end position="109"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR017269-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="254" mass="27816" checksum="B2C87DC6D7176A1E" modified="2008-05-20" version="1">MFKKGDWALFVEERGGYKTVARVGSGKIQTVRGYIDTDEAVGLPHGAFITTSLGVRFKALPATVFDVIEHRFRLGAQAIYPKDALYILKAASIGPGSVVAEAGTGSGFLTAVLAWYVRPWGVIYSFEKRLEHLRIAVRNIKIAGLDQYVELQLRDVVESGFGPLSVDAVVLDMGDPWNAVGNALEILKPGGTLAIFSTTVEHMSKSIEALRKNGLLLISVEEVSIRRWKPIPGELRPETFDVVHTGWIIAARRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9B5</accession>
    <name>B1Y9B5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1419</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Cell membrane</location>
            <topology evidence="1 7">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350763.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9B5"/>
    <dbReference type="STRING" id="444157.Tneu_1419"/>
    <dbReference type="GeneID" id="6164422"/>
    <dbReference type="KEGG" id="tne:Tneu_1419"/>
    <dbReference type="eggNOG" id="arCOG00751">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036879_1_0_2"/>
    <dbReference type="OrthoDB" id="44105at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30465:SF45">
        <property type="entry name" value="BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEMS INNER MEMBRANE COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30465">
        <property type="entry name" value="INNER MEMBRANE ABC TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="129"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="163"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="221"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="280"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="325"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="8">
        <location>
            <begin position="125"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="358" mass="39252" checksum="98964FCF8AC1E91F" modified="2008-05-20" version="1">MASLVKTLVVKALTLVVVLIGVLVLLAVILGATGLSNKILKSILTAEVQEYKQQLIRQGLDPASVEKAVAEYNKTRAEALGLNKDWYVRLPQTIVQLLLLDLGTSRTLQSSWGSNKISDLIMDRLPNTIILTTSGIAVTALVGIWIGLYIGSNVGGGGRADRVISILSAASYALPLWFVGLVLILVLAYAPKILWGVQIFPPGGMVSTPPPREPLAYVLDVLWHLSLPLIASFIVFFGSWAYSTRNIVLSVSQEDFVAFARAKGLPESLVRRRYILRPSLPPILTNLILSLAFSISGYIITERVFNWPGMGSLYYAAITALDEPVIFALTYIFTLVYIIARFILEILYVVVDPRIRLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9J5</accession>
    <name>B1Y9J5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">PaREP1 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1500</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350843.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9J5"/>
    <dbReference type="STRING" id="444157.Tneu_1500"/>
    <dbReference type="GeneID" id="6165660"/>
    <dbReference type="KEGG" id="tne:Tneu_1500"/>
    <dbReference type="eggNOG" id="arCOG05597">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2379527_0_0_2"/>
    <dbReference type="OrthoDB" id="27045at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="66"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="94" mass="11036" checksum="82E9B630B24770F4" modified="2008-05-20" version="1">MPTCARWERLISWAEKNGNKLKALEFKEKLVECIVYTAREKVARRELAEAEELIKYGKEAAKRFGIEELSFHLSLLEKEIAKIRERRRAQAQST</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9K6</accession>
    <name>B1Y9K6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioredoxin domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1511</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350854.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9K6"/>
    <dbReference type="STRING" id="444157.Tneu_1511"/>
    <dbReference type="GeneID" id="6165642"/>
    <dbReference type="KEGG" id="tne:Tneu_1511"/>
    <dbReference type="eggNOG" id="arCOG01972">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090389_10_1_2"/>
    <dbReference type="OrthoDB" id="35385at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02947">
        <property type="entry name" value="TRX_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45663">
        <property type="entry name" value="GEO12009P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45663:SF11">
        <property type="entry name" value="GEO12009P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="1">
        <location>
            <begin position="14"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="140" mass="15631" checksum="2D3C2D387A63716A" modified="2008-05-20" version="1">MDDVERLLWKKAVELTSRKTPQCCNVSYAPGQVLYGVDQLRNAVASCKTAFVMFFGKMCPYCQMFDPIFRQVGERYRAYANFVKADVEVFFDLAARLGVMGTPTTVAFVEGRPLDAVSGFLTAPQFKAFVESVLSRAGCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9K7</accession>
    <name>B1Y9K7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">4-hydroxybenzoate polyprenyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1512</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the UbiA prenyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350855.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9K7"/>
    <dbReference type="STRING" id="444157.Tneu_1512"/>
    <dbReference type="GeneID" id="6165775"/>
    <dbReference type="KEGG" id="tne:Tneu_1512"/>
    <dbReference type="eggNOG" id="arCOG00477">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034879_5_1_2"/>
    <dbReference type="OrthoDB" id="56630at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13959">
        <property type="entry name" value="PT_UbiA_COQ2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.357.140:FF:000008">
        <property type="entry name" value="4-hydroxybenzoate octaprenyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.140">
        <property type="entry name" value="UbiA prenyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1780">
        <property type="entry name" value="UbiA prenyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006371">
        <property type="entry name" value="Polyprenyltransferase_UbiA-li"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039653">
        <property type="entry name" value="Prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044878">
        <property type="entry name" value="UbiA_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01475">
        <property type="entry name" value="ubiA_other"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11048:SF28">
        <property type="entry name" value="4-HYDROXYBENZOATE POLYPRENYLTRANSFERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11048">
        <property type="entry name" value="PRENYLTRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="89"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="117"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="142"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="172"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="210"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="244"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="270"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="293" mass="30980" checksum="AB985AF0A2FF41FE" modified="2008-05-20" version="1">MAFDPEAVGATAARLLRFIRVEHTVFTLPMAYAAALLAGGALDVLRALFIGLAVFGLRTAGMAWNNIADYPIDKVNPRTRGRMLVSGKVTFREAYAVFLFGVAVFLTSAAALGKMPTALSIPYLAVVIAYPYAKRLHCLPHLHLGLVYALVPLGASIAMHPDSLEAALANTPWLLVVASALWVAGFDVVYSKGDYQFDRSYGLGSIPACYGLKTADVAAVALLTTSAVLYVANYLSYGLSPWGLALTLAGAALEIYSALLGATGDVARGFNLNLAVGVLMPLGVFVGYYTQPP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9M7</accession>
    <name>DPCKG_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GTP-dependent dephospho-CoA kinase</fullName>
            <ecNumber evidence="1">2.7.1.237</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Dephospho-coenzyme A kinase</fullName>
            <shortName evidence="1">DPCK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_1532</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the GTP-dependent phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A (CoA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>3'-dephospho-CoA + GTP = GDP + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:61156"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57328"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="2.7.1.237"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; coenzyme A biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GTP-dependent DPCK family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.237" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350875.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9M7"/>
    <dbReference type="SMR" id="B1Y9M7"/>
    <dbReference type="STRING" id="444157.Tneu_1532"/>
    <dbReference type="GeneID" id="6165254"/>
    <dbReference type="KEGG" id="tne:Tneu_1532"/>
    <dbReference type="eggNOG" id="arCOG04076">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_120795_1_0_2"/>
    <dbReference type="OrthoDB" id="15447at2157"/>
    <dbReference type="UniPathway" id="UPA00241"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00590">
        <property type="entry name" value="Dephospho_CoA_kinase_GTP_dep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007164">
        <property type="entry name" value="GTP-dep_dephospho-CoA_kin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40732:SF1">
        <property type="entry name" value="GTP-DEPENDENT DEPHOSPHO-COA KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40732">
        <property type="entry name" value="UPF0218 PROTEIN TK1697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04019">
        <property type="entry name" value="DUF359"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword id="KW-0342">GTP-binding</keyword>
    <keyword id="KW-0418">Kinase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000129794" description="GTP-dependent dephospho-CoA kinase">
        <location>
            <begin position="1"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00590"/>
        </source>
    </evidence>
    <sequence length="168" mass="19096" checksum="E0469B63E4513E81" modified="2008-05-20" version="1">MRCLRIRERRDLFAFPYPIAVWREPPRSLEVVSDLALSYGVEHIYTVGDVVTKNFLDYGVTPTSAAVDEKTRRGLPVEQHRKFQRVIKVVNPPGYITEEAWAAVEEAVGGGVLIKVEGEEDMLALAFIKMAPPRSLVVYGHYKGALIAVMVDWYRDAIDRLLQYLEKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="96" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9N7</accession>
    <name>B1Y9N7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ORC1-type DNA replication protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0001</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in regulation of DNA replication.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the CDC6/cdc18 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349381.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9N7"/>
    <dbReference type="STRING" id="444157.Tneu_0001"/>
    <dbReference type="GeneID" id="6164376"/>
    <dbReference type="KEGG" id="tne:Tneu_0001"/>
    <dbReference type="eggNOG" id="arCOG00467">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025112_3_2_2"/>
    <dbReference type="OrthoDB" id="195574at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08768">
        <property type="entry name" value="Cdc6_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18139">
        <property type="entry name" value="HLD_clamp_RarA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.60:FF:000073">
        <property type="entry name" value="ORC1-type DNA replication protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01407">
        <property type="entry name" value="ORC1_type_DNA_replic_protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049945">
        <property type="entry name" value="AAA_22"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015163">
        <property type="entry name" value="Cdc6_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055237">
        <property type="entry name" value="Cdc6_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050311">
        <property type="entry name" value="ORC1/CDC6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014277">
        <property type="entry name" value="Orc1/Cdc6_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02928">
        <property type="entry name" value="orc1/cdc6 family replication initiation protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10763">
        <property type="entry name" value="CELL DIVISION CONTROL PROTEIN 6-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10763:SF31">
        <property type="entry name" value="ORC1-TYPE DNA REPLICATION PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13401">
        <property type="entry name" value="AAA_22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22703">
        <property type="entry name" value="Cdc6_lid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09079">
        <property type="entry name" value="WHD_Cdc6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01074">
        <property type="entry name" value="Cdc6_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="6">
        <location>
            <begin position="43"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="Cdc6 C-terminal" evidence="7">
        <location>
            <begin position="294"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="55"/>
            <end position="59"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB38959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="389" mass="43951" checksum="69739455EDB101DD" modified="2008-05-20" version="1">MGIIANEAVFSPSYVPDRLPHREQQLQQLDTLFGGWLRSPGNHYPRATLLGRPGTGKTVTLRKLWELRRGEAAARFVYINGFLFRNFTTIVGEIAKSLNIPFPRRGLSRDEFLALLVEHLRERDIYVFLVLDDAFNFAPDILSTFIRLGQETDKLGSFRIALAAVGHSDTILNNLDPSTRGIMGKYVVRFTPYTKDQIFDILLERARAGLADGSYSEEILQMIADITGAQSPLDTNRGDARLAIDILYRAAHLAQQSGRRQITPEDVRRSSKEVLFGVSEEVLVGLPLHEKLFLLAVVRTLKTTRAPYVSFGDAEEVYKMICEEYGEKPRVHSQLWTYLGDLRERGIIETRQNKKGEGMRGRTTLISIGTEPLDTLEAVLTKMINEELK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9N8</accession>
    <name>B1Y9N8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Regulatory protein ArsR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0002</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349382.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9N8"/>
    <dbReference type="STRING" id="444157.Tneu_0002"/>
    <dbReference type="GeneID" id="6164648"/>
    <dbReference type="KEGG" id="tne:Tneu_0002"/>
    <dbReference type="eggNOG" id="arCOG04056">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_184944_1_0_2"/>
    <dbReference type="OrthoDB" id="28763at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38600">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATORY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38600:SF1">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATORY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12840">
        <property type="entry name" value="HTH_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="92" mass="10336" checksum="CB28A32764E2E6D6" modified="2008-05-20" version="1">MIELILGSPLRIRIVLTLWRFGELNATELAKRLGTNYRQLTAHIKTLAENGIVEERRIGRARLVKLRNTGFVEALAKALAEAEEALLRRASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9R9</accession>
    <name>B1Y9R9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1545</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350888.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9R9"/>
    <dbReference type="GeneID" id="6165365"/>
    <dbReference type="KEGG" id="tne:Tneu_1545"/>
    <dbReference type="eggNOG" id="arCOG05681">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1567264_0_0_2"/>
    <dbReference type="OrthoDB" id="28265at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="163" mass="18703" checksum="F115F2B5E97DC2AF" modified="2008-05-20" version="1">MFGKIKLGIEEWKKVENELTRISSGEPLEIVINLTLVSSLEGEELEEEHHHHHFEENEFTREVARLIDHISQTYNGHVHPHLHSNHGSVMFSVKGSPQELIKTLRDSVEFVKLNCEKCILHTLDGEFHIGEDLAGIYFGDAYKITVILPAEDGRRLKVHEVHL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9S4</accession>
    <name>RS4E_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein eS4</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">30S ribosomal protein S4e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps4e</name>
        <name type="ordered locus">Tneu_1550</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eS4 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350893.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9S4"/>
    <dbReference type="SMR" id="B1Y9S4"/>
    <dbReference type="STRING" id="444157.Tneu_1550"/>
    <dbReference type="GeneID" id="6166242"/>
    <dbReference type="KEGG" id="tne:Tneu_1550"/>
    <dbReference type="eggNOG" id="arCOG04093">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060400_0_0_2"/>
    <dbReference type="OrthoDB" id="372073at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.290.10:FF:000002">
        <property type="entry name" value="40S ribosomal protein S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.740">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="entry name" value="RNA-binding S4 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00485">
        <property type="entry name" value="Ribosomal_eS4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000876">
        <property type="entry name" value="Ribosomal_eS4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013845">
        <property type="entry name" value="Ribosomal_eS4_central_region"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038237">
        <property type="entry name" value="Ribosomal_eS4_central_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013843">
        <property type="entry name" value="Ribosomal_eS4_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003312">
        <property type="entry name" value="PRK04313.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11581">
        <property type="entry name" value="30S/40S RIBOSOMAL PROTEIN S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11581:SF0">
        <property type="entry name" value="SMALL RIBOSOMAL SUBUNIT PROTEIN ES4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00900">
        <property type="entry name" value="Ribosomal_S4e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08071">
        <property type="entry name" value="RS4NT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002116">
        <property type="entry name" value="Ribosomal_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55174">
        <property type="entry name" value="Alpha-L RNA-binding motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50889">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000126118" description="Small ribosomal subunit protein eS4">
        <location>
            <begin position="1"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="S4 RNA-binding" evidence="1">
        <location>
            <begin position="38"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="238" mass="26874" checksum="669665EE4E77B9FB" modified="2008-05-20" version="1">MVHLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVGFHGQLSEIVWTLKRRQSVVLLKRGEEAKRTILDYIMAVGAEAPVIKISP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9T9</accession>
    <name>RS8E_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein eS8</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">30S ribosomal protein S8e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps8e</name>
        <name type="ordered locus">Tneu_1565</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eS8 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350908.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9T9"/>
    <dbReference type="SMR" id="B1Y9T9"/>
    <dbReference type="STRING" id="444157.Tneu_1565"/>
    <dbReference type="GeneID" id="6165071"/>
    <dbReference type="KEGG" id="tne:Tneu_1565"/>
    <dbReference type="eggNOG" id="arCOG04154">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080597_2_1_2"/>
    <dbReference type="OrthoDB" id="372305at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11382">
        <property type="entry name" value="Ribosomal_S8e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.10.310:FF:000002">
        <property type="entry name" value="30S ribosomal protein S8e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00029">
        <property type="entry name" value="Ribosomal_eS8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001047">
        <property type="entry name" value="Ribosomal_eS8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018283">
        <property type="entry name" value="Ribosomal_eS8_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020919">
        <property type="entry name" value="Ribosomal_protein_eS8_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022309">
        <property type="entry name" value="Ribosomal_Se8/biogenesis_NSA2"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00307">
        <property type="entry name" value="eS8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10394">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01201">
        <property type="entry name" value="Ribosomal_S8e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01193">
        <property type="entry name" value="RIBOSOMAL_S8E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000090257" description="Small ribosomal subunit protein eS8">
        <location>
            <begin position="1"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="16"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="3"/>
    <sequence length="131" mass="14424" checksum="DFC96F4CDED124E6" modified="2008-05-20" version="1">MKLGAFYKGGDLKKPSGGKKRRVRRTKKKALGGGPPQIPKLGENDVRVVERVRGGNIKVRMREARFANVYVPKEKRYVKARIVSIVSTPANPDYARRNFIVKGAVIQTEVGKAVVTSRPGQDGVINAVLIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9U9</accession>
    <name>B1Y9U9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PaREP1 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1575</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350918.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9U9"/>
    <dbReference type="STRING" id="444157.Tneu_1575"/>
    <dbReference type="GeneID" id="6166087"/>
    <dbReference type="KEGG" id="tne:Tneu_1575"/>
    <dbReference type="eggNOG" id="arCOG07438">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_170812_0_0_2"/>
    <dbReference type="OrthoDB" id="27877at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="113" mass="12789" checksum="9BDC206A28A4A116" modified="2008-05-20" version="1">MRELLRHKIREALEKSDYRALARLCLEVLNAEGWLDCWRKMEGVVQRSGEYVLAKFLASAYALAQDEIYTILSPATREFLARDVVVCLEKTTQVLELLSSQEASGDIRGRGGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9X1</accession>
    <name>B1Y9X1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1598</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350940.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9X1"/>
    <dbReference type="STRING" id="444157.Tneu_1598"/>
    <dbReference type="GeneID" id="6165116"/>
    <dbReference type="KEGG" id="tne:Tneu_1598"/>
    <dbReference type="eggNOG" id="arCOG05665">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2103649_0_0_2"/>
    <dbReference type="OrthoDB" id="28762at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="55"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="123" mass="14364" checksum="36FD1B189306423C" modified="2008-05-20" version="1">MEVEYLIEKLGRHLGGIDVEKVKSALRSRAEGAERILGIRLEETEAEVEAECRRIRGLLGRYKEEERRLTDLYRELKLLGVAPSDLEALKKRMREVRRRIRLYREIEKRCQGRSVSSQVGPQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Y0</accession>
    <name>B1Y9Y0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thioredoxin/glutaredoxin-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1607</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Y0"/>
    <dbReference type="STRING" id="444157.Tneu_1607"/>
    <dbReference type="KEGG" id="tne:Tneu_1607"/>
    <dbReference type="eggNOG" id="arCOG04235">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_095574_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="249" mass="28213" checksum="7A791DC54F8BE9EF" modified="2008-05-20" version="1">MYVGLMIKVVIHHTCKSSYVLYKALRGTPGIAFEMVGTRYLPYLKSYILSVPAVFNDGRLILLDPVEPNDVLALRDGKTEKDLDLDEAAENFMRGVMASQAILAAVMLYKSLKPALEPELVAVLSRARYHRQEDKTDQITRRLAEREEELIRENWERLVKILTFGLVREMYWLGADVDNVEPIHVKMWLLAKATVGRLGLPYPKPAVPEDVAAAVYTTLKESGRRYLDKVAEEQTTILTDADFMSLAKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="95" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Y1</accession>
    <name>B1Y9Y1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 12">Ribonucleoside-diphosphate reductase</fullName>
            <ecNumber evidence="2 12">1.17.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Tneu_1608</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>a 2'-deoxyribonucleoside 5'-diphosphate + [thioredoxin]-disulfide + H2O = a ribonucleoside 5'-diphosphate + [thioredoxin]-dithiol</text>
            <dbReference type="Rhea" id="RHEA:23252"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:73316"/>
            <dbReference type="EC" id="1.17.4.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>adenosylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the ribonucleoside diphosphate reductase large chain family.</text>
    </comment>
    <dbReference type="EC" id="1.17.4.1" evidence="2 12"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350950.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Y1"/>
    <dbReference type="STRING" id="444157.Tneu_1608"/>
    <dbReference type="GeneID" id="6165909"/>
    <dbReference type="KEGG" id="tne:Tneu_1608"/>
    <dbReference type="eggNOG" id="arCOG03151">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="eggNOG" id="arCOG04276">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000404_2_1_2"/>
    <dbReference type="OrthoDB" id="6188at2157"/>
    <dbReference type="UniPathway" id="UPA00326"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004748">
        <property type="term" value="F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009263">
        <property type="term" value="P:deoxyribonucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016539">
        <property type="term" value="P:intein-mediated protein splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00081">
        <property type="entry name" value="Hint"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.70.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.16.10">
        <property type="entry name" value="Hedgehog/Intein (Hint) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.28.10">
        <property type="entry name" value="Homing endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005144">
        <property type="entry name" value="ATP-cone_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003586">
        <property type="entry name" value="Hint_dom_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003587">
        <property type="entry name" value="Hint_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036844">
        <property type="entry name" value="Hint_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027434">
        <property type="entry name" value="Homing_endonucl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006142">
        <property type="entry name" value="INTEIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030934">
        <property type="entry name" value="Intein_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004042">
        <property type="entry name" value="Intein_endonuc_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006141">
        <property type="entry name" value="Intein_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004860">
        <property type="entry name" value="LAGLIDADG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050862">
        <property type="entry name" value="RdRp_reductase_class-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000788">
        <property type="entry name" value="RNR_lg_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013509">
        <property type="entry name" value="RNR_lsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008926">
        <property type="entry name" value="RNR_R1-su_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01443">
        <property type="entry name" value="intein_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01445">
        <property type="entry name" value="intein_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43371:SF1">
        <property type="entry name" value="RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43371">
        <property type="entry name" value="VITAMIN B12-DEPENDENT RIBONUCLEOTIDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14890">
        <property type="entry name" value="Intein_splicing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14528">
        <property type="entry name" value="LAGLIDADG_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02867">
        <property type="entry name" value="Ribonuc_red_lgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00317">
        <property type="entry name" value="Ribonuc_red_lgN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00379">
        <property type="entry name" value="INTEIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00305">
        <property type="entry name" value="HintC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00306">
        <property type="entry name" value="HintN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51294">
        <property type="entry name" value="Hedgehog/intein (Hint) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55608">
        <property type="entry name" value="Homing endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51998">
        <property type="entry name" value="PFL-like glycyl radical enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48168">
        <property type="entry name" value="R1 subunit of ribonucleotide reductase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51161">
        <property type="entry name" value="ATP_CONE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50818">
        <property type="entry name" value="INTEIN_C_TER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50819">
        <property type="entry name" value="INTEIN_ENDONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50817">
        <property type="entry name" value="INTEIN_N_TER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="3" id="KW-0846">Cobalamin</keyword>
    <keyword evidence="10" id="KW-0170">Cobalt</keyword>
    <keyword evidence="9 12" id="KW-0215">Deoxyribonucleotide synthesis</keyword>
    <keyword evidence="4 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 12 15" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-0651">Protein splicing</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-cone" evidence="14">
        <location>
            <begin position="2"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="DOD-type homing endonuclease" evidence="13">
        <location>
            <begin position="587"/>
            <end position="728"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB40531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="1240" mass="139093" checksum="CEBA967DB17A6B97" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA58</accession>
    <name>B1YA58_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0074</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349453.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA58"/>
    <dbReference type="STRING" id="444157.Tneu_0074"/>
    <dbReference type="GeneID" id="6164515"/>
    <dbReference type="KEGG" id="tne:Tneu_0074"/>
    <dbReference type="eggNOG" id="arCOG03734">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1507440_0_0_2"/>
    <dbReference type="OrthoDB" id="26134at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="10"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="184" mass="21248" checksum="466F51339EEB89A2" modified="2008-05-20" version="1">MSLDVAYLALGELEKLLSQYDERLKGIEDTWKAFVDASAKAKASWDADLPKIKIRVDQLKNVVESLRKELEVLLAKRELGLISEKDYLDLTAELQKKIDEYQEKLAALTQKISEIESRILYLWSRSLTRDYLAKFDLVELEKRIEDAKAAGRIDDETYARVKQEIALMKHTWELLNLVAPPPKL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAD4</accession>
    <name>RL18A_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein eL20</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L18Ae</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">50S ribosomal protein L20e</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">50S ribosomal protein LX</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl18a</name>
        <name evidence="1" type="synonym">rpl20e</name>
        <name evidence="1" type="synonym">rplX</name>
        <name type="ordered locus">Tneu_1661</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit. Binds 23S rRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL20 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351002.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAD4"/>
    <dbReference type="SMR" id="B1YAD4"/>
    <dbReference type="STRING" id="444157.Tneu_1661"/>
    <dbReference type="GeneID" id="6166324"/>
    <dbReference type="KEGG" id="tne:Tneu_1661"/>
    <dbReference type="eggNOG" id="arCOG04175">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_177460_0_1_2"/>
    <dbReference type="OrthoDB" id="191241at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00273">
        <property type="entry name" value="Ribosomal_eL20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028877">
        <property type="entry name" value="Ribosomal_eL20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023573">
        <property type="entry name" value="Ribosomal_eL20_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001981">
        <property type="entry name" value="PRK00773.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01775">
        <property type="entry name" value="Ribosomal_L18A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160374">
        <property type="entry name" value="RplX-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000114569" description="Large ribosomal subunit protein eL20">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="78" mass="8892" checksum="40B7064E1531179E" modified="2008-05-20" version="1">MPRIYRVVGETATGMRFRVEVTAEKPYDAVEKVYSLIGSRHKLSRVQIKIREVAVVSPEEARSDAAKLLMAVDRVVRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAE1</accession>
    <name>B1YAE1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1668</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351009.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAE1"/>
    <dbReference type="STRING" id="444157.Tneu_1668"/>
    <dbReference type="GeneID" id="6165370"/>
    <dbReference type="KEGG" id="tne:Tneu_1668"/>
    <dbReference type="eggNOG" id="arCOG07481">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1821083_0_0_2"/>
    <dbReference type="OrthoDB" id="25857at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="141" mass="15726" checksum="2C199CECD74542C5" modified="2008-05-20" version="1">MSVFEVLSTVFVIRGRDFECATSIGDYHVAVTEQGAVYAMRCREGGECRDCVEFPIYEDVVAYLPRRFYNCLGCLLGEFFNAGLFNISVGGVVVTQRRAYLVPPMAKERGDPERLAKRAGGILENYMLKVLAASFKTCCKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAF3</accession>
    <name>B1YAF3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Small ribosomal subunit protein eS19</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rps19e</name>
        <name evidence="6" type="ordered locus">Tneu_1680</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">May be involved in maturation of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the eukaryotic ribosomal protein eS19 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351021.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAF3"/>
    <dbReference type="STRING" id="444157.Tneu_1680"/>
    <dbReference type="GeneID" id="6165214"/>
    <dbReference type="KEGG" id="tne:Tneu_1680"/>
    <dbReference type="eggNOG" id="arCOG01344">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108559_1_0_2"/>
    <dbReference type="OrthoDB" id="371836at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000028">
        <property type="term" value="P:ribosomal small subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000449">
        <property type="entry name" value="30S ribosomal protein S19e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01474">
        <property type="entry name" value="Ribosomal_eS19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001266">
        <property type="entry name" value="Ribosomal_eS19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027548">
        <property type="entry name" value="Ribosomal_eS19_archaeal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018277">
        <property type="entry name" value="Ribosomal_eS19_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006811">
        <property type="entry name" value="PRK09333.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11710">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11710:SF0">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01090">
        <property type="entry name" value="Ribosomal_S19e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01413">
        <property type="entry name" value="Ribosomal_S19e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00628">
        <property type="entry name" value="RIBOSOMAL_S19E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00035143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="158" mass="17598" checksum="87756C048BFCB47D" modified="2008-05-20" version="1">MTSVKDVPADLLIAELARYIRENVPQVKPPVWAPFVKTGANKERPPMTQDWWYVRAASLMRKLYLYGPVGVGSLRTAYGYRAKIGDKTRPERTRKAGGAIIRKLLQQLEQAGFVAKTKGGRVLTPEGKSLVDRLAAKIARDLAKARPELAKYLAPPKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAI3</accession>
    <name>B1YAI3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1712</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351051.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAI3"/>
    <dbReference type="GeneID" id="6165538"/>
    <dbReference type="KEGG" id="tne:Tneu_1712"/>
    <dbReference type="eggNOG" id="arCOG07061">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_726873_0_0_2"/>
    <dbReference type="OrthoDB" id="29294at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="333"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="354" mass="38952" checksum="7D867BF2D4E8C989" modified="2008-05-20" version="1">MILTQIFRLAGVVLLVALATVFASSASLIEKRGSVVVENLTALTDVLRPTYVFDLGACSAYVYVARSFNDTTPMLFLSRMERPLPPFPSHSFEELVDAVLPLVGPEVEVEVSIYGVSDAGRGAYQVSKIVKVAARNYTELEVAVGRALGLEVYRDPSKGLNGNGTAQSGRREIAVIDRVVMKTPKVKVLLRRGDPLIIDTISSAEAEGIIKAVKERIGDFSAIVTVGPYWAGGDEENERLRNAAMRLEEEMGTVRKTERGVEGIIHLFTLSSAGPRVFVFPYPNGTRPPDEKTAEKIVRRFVELSGYCKSPLIVEFWPKTGYEFREPRDAPPLWAAAVLAALVPLVAIYLRRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAK1</accession>
    <name>B1YAK1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1732</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the HerA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351069.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAK1"/>
    <dbReference type="STRING" id="444157.Tneu_1732"/>
    <dbReference type="GeneID" id="6164943"/>
    <dbReference type="KEGG" id="tne:Tneu_1732"/>
    <dbReference type="eggNOG" id="arCOG00280">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023842_2_0_2"/>
    <dbReference type="OrthoDB" id="107033at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008571">
        <property type="entry name" value="HerA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018538">
        <property type="entry name" value="HerA_barrel_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002789">
        <property type="entry name" value="HerA_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42957">
        <property type="entry name" value="HELICASE MJ1565-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42957:SF1">
        <property type="entry name" value="HELICASE MJ1565-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01935">
        <property type="entry name" value="DUF87"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09378">
        <property type="entry name" value="HAS-barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase HerA barrel" evidence="6">
        <location>
            <begin position="4"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase HerA central" evidence="5">
        <location>
            <begin position="135"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00048954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00048988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF09378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="524" mass="58232" checksum="C7A03C2EA7DAE18D" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAK8</accession>
    <name>B1YAK8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Geranylgeranyl reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1739</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAK8"/>
    <dbReference type="STRING" id="444157.Tneu_1739"/>
    <dbReference type="KEGG" id="tne:Tneu_1739"/>
    <dbReference type="eggNOG" id="arCOG00570">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024648_5_0_2"/>
    <dbReference type="OrthoDB" id="46008at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016628">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011777">
        <property type="entry name" value="Geranylgeranyl_Rdtase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050407">
        <property type="entry name" value="Geranylgeranyl_reductase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02032">
        <property type="entry name" value="GG-red-SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42685:SF22">
        <property type="entry name" value="CONDITIONED MEDIUM FACTOR RECEPTOR 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42685">
        <property type="entry name" value="GERANYLGERANYL DIPHOSPHATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00469">
        <property type="entry name" value="PNDRDTASEII"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding" evidence="1">
        <location>
            <begin position="2"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="358" mass="38571" checksum="63950F6A9658F594" modified="2008-05-20" version="1">MYDVVIVGAGPAGSTAALVAARLGLKAAVIDRLQPPREKPCGGGLTPRTWKLLNRLGVEYPVYGSCQNIETRAAGYRYVLRKEPILITRRPEFDYAILRQSNAEFIKDHVLGVEGGRVLGRAGEYQGRVVIGADGATSAVARSIGVVNYRQHKSHAIAYMTIARGPTTDTCVIDFDAVVRKTGRAGYAWVFPLEGGANVGAGVGWGSWLDLRSFVVEYAEGAGYKPGPVLGHPLSLGYTAGLGRGNVLLAGEAAGLVDATTGEGIYYAVSTGAAAATAAYVALKIYGNEKRALEIYRGLVEPYVQEVKKTRWLSRMAKTLGTMRWVAKLLGRRLLNLYSKVYTGEATYSLLLKPVERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAM6</accession>
    <name>B1YAM6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Imidazole glycerol phosphate synthase subunit HisH</fullName>
            <ecNumber evidence="10">4.3.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">IGP synthase glutaminase subunit</fullName>
            <ecNumber evidence="10">3.5.1.2</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">IGP synthase subunit HisH</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">ImGP synthase subunit HisH</fullName>
            <shortName evidence="10">IGPS subunit HisH</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">hisH</name>
        <name evidence="13" type="ordered locus">Tneu_0148</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 10">
            <text>5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + L-glutamine = D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate + 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + L-glutamate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:24793"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="ChEBI" id="CHEBI:58525"/>
            <dbReference type="EC" id="4.3.2.10"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9 10">
            <text>L-glutamine + H2O = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="3.5.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 10">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 5/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 10">Heterodimer of HisH and HisF.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="4.3.2.10" evidence="10"/>
    <dbReference type="EC" id="3.5.1.2" evidence="10"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349526.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAM6"/>
    <dbReference type="STRING" id="444157.Tneu_0148"/>
    <dbReference type="GeneID" id="6164748"/>
    <dbReference type="KEGG" id="tne:Tneu_0148"/>
    <dbReference type="eggNOG" id="arCOG00089">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071837_2_2_2"/>
    <dbReference type="OrthoDB" id="33401at2157"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000107">
        <property type="term" value="F:imidazoleglycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:L-histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00278">
        <property type="entry name" value="HisH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010139">
        <property type="entry name" value="Imidazole-glycPsynth_HisH"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01855">
        <property type="entry name" value="IMP_synth_hisH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42701">
        <property type="entry name" value="IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42701:SF1">
        <property type="entry name" value="IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000495">
        <property type="entry name" value="Amidotransf_hisH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="Class I glutamine amidotransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51273">
        <property type="entry name" value="GATASE_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 10 13" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="6 10" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="4 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamine amidotransferase" evidence="12">
        <location>
            <begin position="5"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="10 11">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <feature type="active site" evidence="10 11">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <feature type="active site" evidence="10 11">
        <location>
            <position position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00049534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000495-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB39105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="191" mass="21208" checksum="1AB7A6D33560CDD5" modified="2008-05-20" version="1">MQVGVVDYTVGNVGSVLNALRRAGAEPRVVKSVEEAGGVDALVLPGVGTYEVAYKLVHEFRQAVLEKPTLAICLGMQLLFESSEEGGGRGLAVFRGAVRRIEARKVPHIGWSYTKAARPQPFVEDGYYYYMHSYGVPWDENDESHVAYVELGRRYVAAVLRGGILGLQFHPERSGRSGIELIRRFLKEARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAP5</accession>
    <name>B1YAP5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">YjbQ family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0167</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0047 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349545.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAP5"/>
    <dbReference type="STRING" id="444157.Tneu_0167"/>
    <dbReference type="GeneID" id="6164960"/>
    <dbReference type="KEGG" id="tne:Tneu_0167"/>
    <dbReference type="eggNOG" id="arCOG04214">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096980_1_2_2"/>
    <dbReference type="OrthoDB" id="6663at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.460">
        <property type="entry name" value="YjbQ-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001602">
        <property type="entry name" value="UPF0047_YjbQ-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035917">
        <property type="entry name" value="YjbQ-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00149">
        <property type="entry name" value="TIGR00149_YjbQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30615">
        <property type="entry name" value="UNCHARACTERIZED PROTEIN YJBQ-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30615:SF8">
        <property type="entry name" value="UPF0047 PROTEIN C4A8.02C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01894">
        <property type="entry name" value="YjbQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004681">
        <property type="entry name" value="UCP004681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111038">
        <property type="entry name" value="YjbQ-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="136" mass="15515" checksum="F319BC681D8D0EB6" modified="2008-05-20" version="1">MRVYVEEFQVATRQREEIVVISDRVEEAVRKSGVKNGIALIYVPHATAIVTANENEPRLREDILNKLRALFPRGAGYRHDEIDNNANAHLANIFLGFHLTMPVVEGELRRGTWQEVMLIEMDGPRRRNVVVVVIGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAS7</accession>
    <name>B1YAS7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0201</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349577.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAS7"/>
    <dbReference type="STRING" id="444157.Tneu_0201"/>
    <dbReference type="GeneID" id="6164701"/>
    <dbReference type="KEGG" id="tne:Tneu_0201"/>
    <dbReference type="eggNOG" id="arCOG00735">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2461884_0_0_2"/>
    <dbReference type="OrthoDB" id="28610at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36216:SF1">
        <property type="entry name" value="HTH ARSR-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36216">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR, TRMB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13412">
        <property type="entry name" value="HTH_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="86" mass="9645" checksum="85D1AC3F0B90106C" modified="2008-05-20" version="1">MLDNTKVQILRKIASQGYTTVGEVVKDLGISWGAAQWHLFWLENNGYIKSVNVNGTTIYILHCANAVRKLESIEQALSRGEAAQRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAT2</accession>
    <name>B1YAT2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Appr-1-p processing domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0206</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349582.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAT2"/>
    <dbReference type="STRING" id="444157.Tneu_0206"/>
    <dbReference type="GeneID" id="6164785"/>
    <dbReference type="KEGG" id="tne:Tneu_0206"/>
    <dbReference type="eggNOG" id="arCOG04225">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046550_7_0_2"/>
    <dbReference type="OrthoDB" id="15450at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd02907">
        <property type="entry name" value="Macro_Af1521_BAL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="entry name" value="Leucine Aminopeptidase, subunit E, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002589">
        <property type="entry name" value="Macro_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001667">
        <property type="entry name" value="PRK00431.2-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11106">
        <property type="entry name" value="GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11106:SF111">
        <property type="entry name" value="MACRO DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01661">
        <property type="entry name" value="Macro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00506">
        <property type="entry name" value="A1pp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="Macro domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51154">
        <property type="entry name" value="MACRO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Macro" evidence="1">
        <location>
            <begin position="1"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="178" mass="18919" checksum="37450702D8B54CC6" modified="2008-05-20" version="1">MDFAVGGVAISLMKGDITEVEADAIVNAANSFLEHGGGVAGAIVRKGGSVIQEESREWVRRHGPVPVGGVAVTSAGRLRAKYVIHAVGPRCGAEPIEKLAEAVKNALIKAEELGLVSIAFPAISTGVFGCPYDEAARQMAAAIREVAPSLKRVRRILVVLYGDETYRRFVEVFKKAFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAZ4</accession>
    <name>B1YAZ4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Methionine--tRNA ligase</fullName>
            <ecNumber evidence="4">6.1.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Methionyl-tRNA synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ordered locus">Tneu_1776</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>tRNA(Met) + L-methionine + ATP = L-methionyl-tRNA(Met) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:13481"/>
            <dbReference type="Rhea" id="RHEA-COMP:9667"/>
            <dbReference type="Rhea" id="RHEA-COMP:9698"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78530"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.10"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="6.1.1.10" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAZ4"/>
    <dbReference type="STRING" id="444157.Tneu_1776"/>
    <dbReference type="KEGG" id="tne:Tneu_1776"/>
    <dbReference type="eggNOG" id="arCOG01136">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065946_3_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004825">
        <property type="term" value="F:methionine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006431">
        <property type="term" value="P:methionyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02800">
        <property type="entry name" value="tRNA_bind_EcMetRS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.50.140:FF:000042">
        <property type="entry name" value="Methionine--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004495">
        <property type="entry name" value="Met-tRNA-synth_bsu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002547">
        <property type="entry name" value="tRNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051270">
        <property type="entry name" value="Tyrosine-tRNA_ligase_regulator"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00399">
        <property type="entry name" value="metG_C_term"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11586">
        <property type="entry name" value="TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11586:SF37">
        <property type="entry name" value="TRNA-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01588">
        <property type="entry name" value="tRNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50886">
        <property type="entry name" value="TRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="13" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="TRNA-binding" evidence="16">
        <location>
            <begin position="10"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00018753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00030904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00047364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ACB40694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="110" mass="12124" checksum="FAAD77CA8E67EE31" modified="2008-05-20" version="1">MVMSLVSIDDFKRVDLRVGKVLEAARVEGSRKLIKLVVDLGAEKRQIVAGLAEYYKPEDLVGKYVVVVANLEPKRLMGVESQGMLLATCDKPVLLTIERGGDEHVGERVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB06</accession>
    <name>B1YB06_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NADH dehydrogenase (Ubiquinone) 30 kDa subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1788</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I 30 kDa subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351125.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB06"/>
    <dbReference type="STRING" id="444157.Tneu_1788"/>
    <dbReference type="GeneID" id="6165135"/>
    <dbReference type="KEGG" id="tne:Tneu_1788"/>
    <dbReference type="eggNOG" id="arCOG01551">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042628_6_1_2"/>
    <dbReference type="OrthoDB" id="43567at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.80">
        <property type="entry name" value="NADH:ubiquinone oxidoreductase, 30kDa subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037232">
        <property type="entry name" value="NADH_quin_OxRdtase_su_C/D-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001268">
        <property type="entry name" value="NADH_UbQ_OxRdtase_30kDa_su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10884:SF14">
        <property type="entry name" value="NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10884">
        <property type="entry name" value="NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00329">
        <property type="entry name" value="Complex1_30kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143243">
        <property type="entry name" value="Nqo5-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADH:ubiquinone oxidoreductase 30kDa subunit" evidence="2">
        <location>
            <begin position="43"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="177" mass="19889" checksum="E04BCEEB2633FBF1" modified="2008-05-20" version="1">MAVKAPPKCPPPADHPLLEKLRTALGDALLSHGVTPEGHLCLMVPPGKVREVAAKLKELGFDHVLSLSAMDYMAEGKFLVMYVYASYLNPDLKNQLLHVRAEIPRNDPKIASIADIYPSADYDERECHEMFGIWFEGNQHMGKRFLLDPDCCIDEKTGKPLYPLRKDFKVPDWGLMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB08</accession>
    <name>B1YB08_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">NADH dehydrogenase (Quinone)</fullName>
            <ecNumber evidence="6">1.6.5.11</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1790</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the complex I 49 kDa subunit family.</text>
    </comment>
    <dbReference type="EC" id="1.6.5.11" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351127.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB08"/>
    <dbReference type="STRING" id="444157.Tneu_1790"/>
    <dbReference type="GeneID" id="6165175"/>
    <dbReference type="KEGG" id="tne:Tneu_1790"/>
    <dbReference type="eggNOG" id="arCOG01548">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015134_1_2_2"/>
    <dbReference type="OrthoDB" id="43567at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016651">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.645.10">
        <property type="entry name" value="Cytochrome-c3 Hydrogenase, chain B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052197">
        <property type="entry name" value="ComplexI_49kDa-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001135">
        <property type="entry name" value="NADH_Q_OxRdtase_suD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014029">
        <property type="entry name" value="NADH_UbQ_OxRdtase_49kDa_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029014">
        <property type="entry name" value="NiFe-Hase_large"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004739">
        <property type="entry name" value="PRK06075.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43485:SF1">
        <property type="entry name" value="FORMATE HYDROGENLYASE SUBUNIT 5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43485">
        <property type="entry name" value="HYDROGENASE-4 COMPONENT G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00346">
        <property type="entry name" value="Complex1_49kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56762">
        <property type="entry name" value="HydB/Nqo4-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00535">
        <property type="entry name" value="COMPLEX1_49K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="1 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-1278">Translocase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="134"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="NADH-quinone oxidoreductase subunit D" evidence="5">
        <location>
            <begin position="144"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="184"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="407" mass="45858" checksum="87E7B6DA6E45D554" modified="2008-05-20" version="1">MQRAEWPFNLQFGNTFYVQNEEELRGGERGLVVVVGPQHPGSGHMRLFVVLDGDIIKEVVPDPGFVHRGVEKLAENRPYWTLIPLVEKASIMDSMNITLPITLALEKALGLEPPPRAKYLRTAMAELSRIRTHLYDLALLGIFLGHSTAFMWGFALMDLYAEVFAKITGARTTVAYPVPGGVRRDVKREHIEAVEKLLRKTEEKLRDFKTVFLDNPVTKARLEGVGVVDAKRAAELGVVGPFARAAGIDHDVRKAAPYDAYPELDFEVVTEKAGDAMARVLVRWREMYVSMDIVRQALKNLPEGDVIDQALLFKNPEYRREGMGGVLGVYTYMYPEPGEYAAVAEAARGATYIHLWTTGTQRVYRMRYVTPSWRNLKAMAEAMRGERLADMPAVYMSFGYFPPEADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB27</accession>
    <name>B1YB27_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1810</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351146.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB27"/>
    <dbReference type="GeneID" id="6164390"/>
    <dbReference type="KEGG" id="tne:Tneu_1810"/>
    <dbReference type="eggNOG" id="arCOG05708">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_859480_0_0_2"/>
    <dbReference type="OrthoDB" id="28938at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="243"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="284"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="323" mass="35025" checksum="77D98E2D9BFD9A24" modified="2008-05-20" version="1">MWHAIGRSDDSAFFNAMMDLVTSARAALLLSAAFFPAGVAAAGHAPWLHGYLMTAGLIAFYHAVMYVQLPGFINAAPHRAATWLLTALLLLGLLAQPRLGYAAYAPYALLHALLYLRGLWGKPTYYPNVITVAGLLLLPLSRNHLEAAMSFPLASVYSLLYRVEFSRARRRFSASTALSIAALYVAAYLAAWAGHAWAFALPSLALTLYAKPRVEDPYGAGAFFFRWAVALTPAGAHLLYMAFAVIMSALCVPYFVPSILYRQAPSYGWELVAAASAAYLLRNAGVLAASAALVAALVLYAAVRSLRERYYPPTKTPERAERG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB34</accession>
    <name>RS10_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein uS10</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">30S ribosomal protein S10</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps10</name>
        <name type="ordered locus">Tneu_1817</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the binding of tRNA to the ribosomes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS10 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351153.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB34"/>
    <dbReference type="SMR" id="B1YB34"/>
    <dbReference type="STRING" id="444157.Tneu_1817"/>
    <dbReference type="GeneID" id="6164645"/>
    <dbReference type="KEGG" id="tne:Tneu_1817"/>
    <dbReference type="eggNOG" id="arCOG01758">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_122625_0_1_2"/>
    <dbReference type="OrthoDB" id="371736at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.600:FF:000004">
        <property type="entry name" value="30S ribosomal protein S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.600">
        <property type="entry name" value="Ribosomal protein S10 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00508">
        <property type="entry name" value="Ribosomal_uS10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001848">
        <property type="entry name" value="Ribosomal_uS10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018268">
        <property type="entry name" value="Ribosomal_uS10_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027486">
        <property type="entry name" value="Ribosomal_uS10_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036838">
        <property type="entry name" value="Ribosomal_uS10_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005729">
        <property type="entry name" value="Ribosomal_uS10_euk/arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01046">
        <property type="entry name" value="uS10_euk_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11700">
        <property type="entry name" value="30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00338">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00971">
        <property type="entry name" value="RIBOSOMALS10"/>
    </dbReference>
    <dbReference type="SMART" id="SM01403">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54999">
        <property type="entry name" value="Ribosomal protein S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00361">
        <property type="entry name" value="RIBOSOMAL_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000127195" description="Small ribosomal subunit protein uS10">
        <location>
            <begin position="1"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="106" mass="12318" checksum="76BA5231529B9EE1" modified="2008-05-20" version="1">MSLASRRKVRIRLYGTNPTDVDQVAREIVDLAKKMGVQVRGPIPLPTRRLMVTVRRAPSGQGYHTFDHWEMRISKRLIDIEASERVLRRLMTIRVPDTVKIELQLI</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="93" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB54</accession>
    <name>LYSY_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate reductase</fullName>
            <ecNumber evidence="1">1.2.1.103</ecNumber>
            <ecNumber evidence="1">1.2.1.106</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">lysY</name>
        <name type="ordered locus">Tneu_1837</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in both the arginine and lysine biosynthetic pathways.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[amino-group carrier protein]-C-terminal-N-(1-carboxy-5-oxopentan-1-yl)-L-glutamine + phosphate + NADP(+) = [amino-group carrier protein]-C-terminal-N-(1-carboxy-5-phosphooxy-5-oxopentan-1-yl)-L-glutamine + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:41948"/>
            <dbReference type="Rhea" id="RHEA-COMP:9712"/>
            <dbReference type="Rhea" id="RHEA-COMP:9714"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:78499"/>
            <dbReference type="ChEBI" id="CHEBI:78501"/>
            <dbReference type="EC" id="1.2.1.103"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[amino-group carrier protein]-C-terminal-gamma-(L-glutamyl-5-semialdehyde)-L-glutamate + phosphate + NADP(+) = [amino-group carrier protein]-C-terminal-gamma-(5-phospho-L-glutamyl)-L-glutamate + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:52668"/>
            <dbReference type="Rhea" id="RHEA-COMP:13313"/>
            <dbReference type="Rhea" id="RHEA-COMP:13327"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:136717"/>
            <dbReference type="ChEBI" id="CHEBI:136761"/>
            <dbReference type="EC" id="1.2.1.106"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-lysine biosynthesis via AAA pathway; L-lysine from L-alpha-aminoadipate (Thermus route): step 3/5.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-arginine biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.103" evidence="1"/>
    <dbReference type="EC" id="1.2.1.106" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351173.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB54"/>
    <dbReference type="SMR" id="B1YB54"/>
    <dbReference type="STRING" id="444157.Tneu_1837"/>
    <dbReference type="GeneID" id="6164731"/>
    <dbReference type="KEGG" id="tne:Tneu_1837"/>
    <dbReference type="eggNOG" id="arCOG00495">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006384_0_1_2"/>
    <dbReference type="OrthoDB" id="372053at2157"/>
    <dbReference type="UniPathway" id="UPA00033">
        <property type="reaction ID" value="UER00037"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043870">
        <property type="term" value="F:N-acetyl-gamma-aminoadipyl-phosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003942">
        <property type="term" value="F:N-acetyl-gamma-glutamyl-phosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070401">
        <property type="term" value="F:NADP+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:L-arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019878">
        <property type="term" value="P:lysine biosynthetic process via aminoadipic acid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd23939">
        <property type="entry name" value="AGPR_1_C_LysY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd17895">
        <property type="entry name" value="AGPR_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.10">
        <property type="entry name" value="Dihydrodipicolinate Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00150">
        <property type="entry name" value="ArgC_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02083">
        <property type="entry name" value="LysY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050085">
        <property type="entry name" value="AGPR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058924">
        <property type="entry name" value="AGPR_dimerisation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000706">
        <property type="entry name" value="AGPR_type-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037535">
        <property type="entry name" value="LysY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01850">
        <property type="entry name" value="argC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32338:SF11">
        <property type="entry name" value="[LYSW]-L-2-AMINOADIPATE_[LYSW]-L-GLUTAMATE PHOSPHATE REDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32338">
        <property type="entry name" value="N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22698">
        <property type="entry name" value="Semialdhyde_dhC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55347">
        <property type="entry name" value="Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0055">Arginine biosynthesis</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0457">Lysine biosynthesis</keyword>
    <keyword id="KW-0521">NADP</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000096742" description="Putative [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate reductase">
        <location>
            <begin position="1"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="10"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="34"/>
            <end position="36"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="319"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02083"/>
        </source>
    </evidence>
    <sequence length="352" mass="38984" checksum="177DB0741C940FCD" modified="2008-05-20" version="1">MKKVCIIGASGFTGGELLRLLLSHSGVEVVCATSRKFKGEFVYRVHPNLRGFTQLKFVEPTIDAALKADVVFLALPHGESVKWVPKLYESGVAVFDLSADFRLKDPNAYVEWYKWPQPHPYPDLLQKAVYGQPELHRDELVGAKLVAVPGCMATASILMLAPLAKYGQLGEVPPVVDAKIGSSGAGAEGSIVDLHSYRTYVVRPYEPVHHRHIAEIEQELSRLAGRRVRVAFTPHAVDIVRGIFTTGHVYLDKLPAEADMWKYYRSMYGDSKFIRIVKDRLGISRYPNVKYVLGSNVVDVGFELDPRLNRVVTFAAIDNLVRGASGQAVQAFNVAMGFPEDEGLRQIPVAPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB60</accession>
    <name>B1YB60_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Coenzyme A biosynthesis bifunctional protein CoaBC</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">DNA/pantothenate metabolism flavoprotein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Phosphopantothenoylcysteine synthetase/decarboxylase</fullName>
            <shortName evidence="3">PPCS-PPCDC</shortName>
        </alternativeName>
        <domain>
            <recommendedName>
                <fullName evidence="3">Phosphopantothenoylcysteine decarboxylase</fullName>
                <shortName evidence="3">PPC decarboxylase</shortName>
                <shortName evidence="3">PPC-DC</shortName>
                <ecNumber evidence="3">4.1.1.36</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="3">CoaC</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="3">Phosphopantothenate--cysteine ligase</fullName>
                <ecNumber evidence="3">6.3.2.5</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="3">CoaB</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="3">Phosphopantothenoylcysteine synthetase</fullName>
                <shortName evidence="3">PPC synthetase</shortName>
                <shortName evidence="3">PPC-S</shortName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="3" type="primary">coaBC</name>
        <name evidence="6" type="ordered locus">Tneu_0238</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes two sequential steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine. In the second step the latter compound is decarboxylated to form 4'-phosphopantotheine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>(R)-4'-phosphopantothenate + L-cysteine + CTP = N-[(R)-4-phosphopantothenoyl]-L-cysteine + CMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19397"/>
            <dbReference type="ChEBI" id="CHEBI:10986"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:59458"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="EC" id="6.3.2.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>N-[(R)-4-phosphopantothenoyl]-L-cysteine + H(+) = (R)-4'-phosphopantetheine + CO2</text>
            <dbReference type="Rhea" id="RHEA:16793"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:59458"/>
            <dbReference type="ChEBI" id="CHEBI:61723"/>
            <dbReference type="EC" id="4.1.1.36"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="3">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Cofactor biosynthesis; coenzyme A biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">In the C-terminal section; belongs to the PPC synthetase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">In the N-terminal section; belongs to the HFCD (homo-oligomeric flavin containing Cys decarboxylase) superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.36" evidence="3"/>
    <dbReference type="EC" id="6.3.2.5" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349612.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB60"/>
    <dbReference type="STRING" id="444157.Tneu_0238"/>
    <dbReference type="GeneID" id="6165995"/>
    <dbReference type="KEGG" id="tne:Tneu_0238"/>
    <dbReference type="eggNOG" id="arCOG01704">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033319_0_3_2"/>
    <dbReference type="OrthoDB" id="10536at2157"/>
    <dbReference type="UniPathway" id="UPA00241"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071513">
        <property type="term" value="C:phosphopantothenoylcysteine decarboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004632">
        <property type="term" value="F:phosphopantothenate--cysteine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004633">
        <property type="term" value="F:phosphopantothenoylcysteine decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015941">
        <property type="term" value="P:pantothenate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10300">
        <property type="entry name" value="CoaB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1950">
        <property type="entry name" value="Flavin prenyltransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02225">
        <property type="entry name" value="CoaBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035929">
        <property type="entry name" value="CoaB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005252">
        <property type="entry name" value="CoaBC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007085">
        <property type="entry name" value="DNA/pantothenate-metab_flavo_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036551">
        <property type="entry name" value="Flavin_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003382">
        <property type="entry name" value="Flavoprotein"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00521">
        <property type="entry name" value="coaBC_dfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14359">
        <property type="entry name" value="HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14359:SF6">
        <property type="entry name" value="PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04127">
        <property type="entry name" value="DFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02441">
        <property type="entry name" value="Flavoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102645">
        <property type="entry name" value="CoaB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52507">
        <property type="entry name" value="Homo-oligomeric flavin-containing Cys decarboxylases, HFCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0288">FMN</keyword>
    <keyword evidence="3 6" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 3" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavoprotein" evidence="4">
        <location>
            <begin position="19"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="domain" description="DNA/pantothenate metabolism flavoprotein C-terminal" evidence="5">
        <location>
            <begin position="188"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphopantothenoylcysteine decarboxylase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphopantothenate--cysteine ligase" evidence="3">
        <location>
            <begin position="191"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="289"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="323"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="401" mass="43608" checksum="E0A0977ADF42B7C0" modified="2008-05-20" version="1">MSEVEAIRGTYSNLLRGVRIALLVSSGVSLYKSIDTARLLIRHGADVHVFMTPKAARLVSPHLFWWATGRRPVVELTGATEHIEICSNADVVLAAPATANTLVKLSLGIADNAALTCALAASRARKVVVPAMNIAMWNTPQVQEAVERLRKHAVVVPPVFEEGKAKYPPPEEVAEYVIDATAPQDYGGVRVLVTAGPTHEHIDDVKYITTPSSGLTGYYFAREAAARGARVTLVAGPAELRPPPGVELVKVTSVLEMYRAVLERAGENDMFIFAAAPLDFYVDGRASGKIDSSLQQYTVVLRQAPKIAQDVKRHNPRAYVIGFKAEHGVEEAELLRKARSRMESGGWDIALAHDVSKMGFGTLKDEYLLLTKDRVEKLGPAHKRELARAVLTLARPGVAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB62</accession>
    <name>B1YB62_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase S9 prolyl oligopeptidase active site domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0240</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349614.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB62"/>
    <dbReference type="STRING" id="444157.Tneu_0240"/>
    <dbReference type="ESTHER" id="thenv-b1yb62">
        <property type="family name" value="Prolyl_oligopeptidase_S9"/>
    </dbReference>
    <dbReference type="GeneID" id="6166045"/>
    <dbReference type="KEGG" id="tne:Tneu_0240"/>
    <dbReference type="eggNOG" id="arCOG01646">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008615_3_2_2"/>
    <dbReference type="OrthoDB" id="31240at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="entry name" value="TolB, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001375">
        <property type="entry name" value="Peptidase_S9_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011659">
        <property type="entry name" value="WD40"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42776:SF27">
        <property type="entry name" value="DIPEPTIDYL PEPTIDASE FAMILY MEMBER 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42776">
        <property type="entry name" value="SERINE PEPTIDASE S9 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07676">
        <property type="entry name" value="PD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00326">
        <property type="entry name" value="Peptidase_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69304">
        <property type="entry name" value="Tricorn protease N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0720">Serine protease</keyword>
    <feature type="domain" description="Peptidase S9 prolyl oligopeptidase catalytic" evidence="3">
        <location>
            <begin position="372"/>
            <end position="569"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="572" mass="64289" checksum="28BDBB57034A3E90" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB78</accession>
    <name>B1YB78_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0256</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349630.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB78"/>
    <dbReference type="GeneID" id="6166145"/>
    <dbReference type="KEGG" id="tne:Tneu_0256"/>
    <dbReference type="eggNOG" id="arCOG03759">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2712991_0_0_2"/>
    <dbReference type="OrthoDB" id="28955at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="72" mass="8194" checksum="B259328ABACCCA81" modified="2008-05-20" version="1">MSLKRFIQSLDPTISCFLIYRLRRAGYDLEELDEERLFEAVARAAGPHIAEVLYTMYLSARSEEGVLAVAEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBA6</accession>
    <name>B1YBA6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0285</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349658.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBA6"/>
    <dbReference type="STRING" id="444157.Tneu_0285"/>
    <dbReference type="GeneID" id="6165745"/>
    <dbReference type="KEGG" id="tne:Tneu_0285"/>
    <dbReference type="eggNOG" id="arCOG04316">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1514597_0_0_2"/>
    <dbReference type="OrthoDB" id="28669at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="168" mass="18441" checksum="6E8D866A881C5529" modified="2008-05-20" version="1">MAKYSILITGEVGRGKSRLLAALVDAVASLGVAVTVVDLAPERMGVGAKLRRYLREGVRYLTDDFRAPRLEAASPGEEAALAEENAGRAAALFRRYLEDPTPVLAVNDLTIYFHRGDPALFWEVFHAARLFMASAYEGVSLRDRGSGITERERRLLEEVKALSHVVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBB6</accession>
    <name>B1YBB6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cobalamin (Vitamin B12) biosynthesis CbiX protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0296</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CobH/CbiC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349668.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBB6"/>
    <dbReference type="STRING" id="444157.Tneu_0296"/>
    <dbReference type="GeneID" id="6165942"/>
    <dbReference type="KEGG" id="tne:Tneu_0296"/>
    <dbReference type="eggNOG" id="arCOG02247">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_827999_0_0_2"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016993">
        <property type="term" value="F:precorrin-8X methylmutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1400">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10230">
        <property type="entry name" value="Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002762">
        <property type="entry name" value="CbiX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003722">
        <property type="entry name" value="Cbl_synth_CobH/CbiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036588">
        <property type="entry name" value="CobH/CbiC_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004449">
        <property type="entry name" value="PRK05782.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43588">
        <property type="entry name" value="COBALT-PRECORRIN-8 METHYLMUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43588:SF1">
        <property type="entry name" value="COBALT-PRECORRIN-8 METHYLMUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02570">
        <property type="entry name" value="CbiC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01903">
        <property type="entry name" value="CbiX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53800">
        <property type="entry name" value="Chelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63965">
        <property type="entry name" value="Precorrin-8X methylmutase CbiC/CobH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC" evidence="7">
        <location>
            <begin position="130"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="310" mass="32582" checksum="3B49876EB4756EE1" modified="2008-05-20" version="1">MVVVLLVNHGSRNPQFNRAMEGLAKAVEEALGVRAYPAYNEYAEPNWRDLVREINDDVVIALAFLGPGNHVQRDILGELGVEPGRWAERFGKRIYVTPPLGDSPLVAAALITRIKAALGGKAEAVLDPAEIEEESMEKVAEALGLDLGDWRDRVRARAAYASGNLELARRVEIAGDVRRAVLEWTSAGGPVVADVSMTAAGLRYGRVEVAVKAQAEARGVTRAYAGVKKLLSAFGSAGVVVGNAPTAAAAAVEECAAGRGIPFIVAAPPAFTNVHVKEEVLKCGVPAVVVKGTYGGSGVAAAIFNELARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBB9</accession>
    <name>B1YBB9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating)</fullName>
            <ecNumber evidence="5">2.1.1.196</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">cbiT</name>
        <name evidence="7" type="ordered locus">Tneu_0299</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the methylation of C-15 in cobalt-precorrin-6B followed by the decarboxylation of C-12 to form cobalt-precorrin-7.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>Co-precorrin-6B + S-adenosyl-L-methionine = Co-precorrin-7 + S-adenosyl-L-homocysteine + CO2</text>
            <dbReference type="Rhea" id="RHEA:36067"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:70791"/>
            <dbReference type="ChEBI" id="CHEBI:72780"/>
            <dbReference type="EC" id="2.1.1.196"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; adenosylcobalamin biosynthesis; cob(II)yrinate a,c-diamide from sirohydrochlorin (anaerobic route): step 8/10.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the methyltransferase superfamily. Archaeal-type CbiT family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.196" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349671.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBB9"/>
    <dbReference type="STRING" id="444157.Tneu_0299"/>
    <dbReference type="GeneID" id="6165944"/>
    <dbReference type="KEGG" id="tne:Tneu_0299"/>
    <dbReference type="eggNOG" id="arCOG00977">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094143_0_0_2"/>
    <dbReference type="OrthoDB" id="6027at2157"/>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00229"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043776">
        <property type="term" value="F:cobalt-precorrin-6B C5-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008276">
        <property type="term" value="F:protein methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019251">
        <property type="term" value="P:anaerobic cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00786">
        <property type="entry name" value="CbiT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023475">
        <property type="entry name" value="CbiT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014008">
        <property type="entry name" value="Cbl_synth_MTase_CbiT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050714">
        <property type="entry name" value="Cobalamin_biosynth_MTase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025714">
        <property type="entry name" value="Methyltranfer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02469">
        <property type="entry name" value="CbiT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43182">
        <property type="entry name" value="COBALT-PRECORRIN-6B C(15)-METHYLTRANSFERASE (DECARBOXYLATING)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43182:SF1">
        <property type="entry name" value="COBALT-PRECORRIN-7 C(5)-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13847">
        <property type="entry name" value="Methyltransf_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase" evidence="6">
        <location>
            <begin position="38"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="45"/>
            <end position="49"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="189" mass="20096" checksum="8A15FA137541362B" modified="2008-05-20" version="1">MRPAPGIPDEEFIREEGIPMTKAEVRAVVVSKLKVGPGDRMLDVGCGTGSVAVEAALMGAWVYAMDKNPRAVELTARNAAKFGVADRVKAEVEEAPRDFAKAGGPFDAVFIGGGGRDIADVVKAALSLVKPGGRLVVDVATLETLSRLVPLLEEVRHEVVLVQIARGRRVGGYTLLSPLNPVYVVTIWP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBD4</accession>
    <name>PANB_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">3-methyl-2-oxobutanoate hydroxymethyltransferase</fullName>
            <ecNumber evidence="1">2.1.2.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Ketopantoate hydroxymethyltransferase</fullName>
            <shortName evidence="1">KPHMT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">panB</name>
        <name type="ordered locus">Tneu_0314</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + 3-methyl-2-oxobutanoate + H2O = 2-dehydropantoate + (6S)-5,6,7,8-tetrahydrofolate</text>
            <dbReference type="Rhea" id="RHEA:11824"/>
            <dbReference type="ChEBI" id="CHEBI:11561"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="EC" id="2.1.2.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; coenzyme A biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodecamer; pentamer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PanB family.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.11" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349686.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBD4"/>
    <dbReference type="SMR" id="B1YBD4"/>
    <dbReference type="STRING" id="444157.Tneu_0314"/>
    <dbReference type="GeneID" id="6166308"/>
    <dbReference type="KEGG" id="tne:Tneu_0314"/>
    <dbReference type="eggNOG" id="arCOG00584">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036645_1_0_2"/>
    <dbReference type="OrthoDB" id="8414at2157"/>
    <dbReference type="UniPathway" id="UPA00241"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003864">
        <property type="term" value="F:3-methyl-2-oxobutanoate hydroxymethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06557">
        <property type="entry name" value="KPHMT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.60:FF:000003">
        <property type="entry name" value="3-methyl-2-oxobutanoate hydroxymethyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="entry name" value="Phosphoenolpyruvate-binding domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00156">
        <property type="entry name" value="PanB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003700">
        <property type="entry name" value="Pantoate_hydroxy_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00222">
        <property type="entry name" value="panB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001452">
        <property type="entry name" value="PRK00311.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20881">
        <property type="entry name" value="3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20881:SF0">
        <property type="entry name" value="3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02548">
        <property type="entry name" value="Pantoate_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000388">
        <property type="entry name" value="Pantoate_hydroxy_MeTrfase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="Phosphoenolpyruvate/pyruvate domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000097012" description="3-methyl-2-oxobutanoate hydroxymethyltransferase">
        <location>
            <begin position="1"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="42"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>3-methyl-2-oxobutanoate</name>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>3-methyl-2-oxobutanoate</name>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>3-methyl-2-oxobutanoate</name>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00156"/>
        </source>
    </evidence>
    <sequence length="261" mass="28216" checksum="C32C7A0862D77A37" modified="2008-05-20" version="1">MPRKSVLDFAKGRGAYVWITAYDYPTAKAVDEAGVDGILVGDSLGMVLLGLPNTLGVTMEDMVRHTEAVARARPRALVVADMPFMSYETGPEDALRNAARLVKAGADAVKLEGGTEYAPIVERLVKAGIPVMGHIGLTPQRFLTIGGFKMVGKTEEQRRKILEDAKALRDAGVFSIVLEFVPASLAREVTQAVDVPTICIGSGPHCDGQILVLHDVVGLTERPPSFAKKYADVAAAIREAVSKYAEEVRKGLFPAREHYRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBD7</accession>
    <name>B1YBD7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0317</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349689.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBD7"/>
    <dbReference type="STRING" id="444157.Tneu_0317"/>
    <dbReference type="GeneID" id="6166261"/>
    <dbReference type="KEGG" id="tne:Tneu_0317"/>
    <dbReference type="eggNOG" id="arCOG03756">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_185777_0_0_2"/>
    <dbReference type="OrthoDB" id="28045at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37559">
        <property type="entry name" value="PAREP6 PART 2, AUTHENTIC FRAMESHIFT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37559:SF1">
        <property type="entry name" value="PAREP6 PART 2, AUTHENTIC FRAMESHIFT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="67" mass="8027" checksum="E72170D767F46923" modified="2008-05-20" version="1">MESEEEARDLRRRHADWQFIESLPPRLRAALVYYIETGDLRRAQQISGLDLDDFRELMRRAKVPLVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBE4</accession>
    <name>B1YBE4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cysteine-rich domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0324</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349696.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBE4"/>
    <dbReference type="STRING" id="444157.Tneu_0324"/>
    <dbReference type="GeneID" id="6165340"/>
    <dbReference type="KEGG" id="tne:Tneu_0324"/>
    <dbReference type="eggNOG" id="arCOG00332">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023081_2_1_2"/>
    <dbReference type="OrthoDB" id="42878at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004017">
        <property type="entry name" value="Cys_rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051460">
        <property type="entry name" value="HdrC_iron-sulfur_subunit"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43255:SF2">
        <property type="entry name" value="HETERODISULFIDE REDUCTASE RELATED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43255">
        <property type="entry name" value="IRON-SULFUR-BINDING OXIDOREDUCTASE FADF-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02754">
        <property type="entry name" value="CCG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cysteine-rich" evidence="1">
        <location>
            <begin position="206"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="306" mass="34257" checksum="B602B2FDD04A4296" modified="2008-05-20" version="1">MSVDWISKLREIVVESLERSWLPFPVEGDICEGWKRGLEVGGGRSTVLYTSCMYHLAPVVEKAVEALEKYGAARGGVRSSLAAFAARAFGGLLLKPEREEVERADAVVRKIYGLLRRSGVEFGLLDREVYSGALLYELGLVDDFAAYAKKVAQYFRERGVRRVITVDPHTHHLLEKVYPQYVDFDVEVVSYIDLVKPVGVTQRGFAIHDSCLYARFLGRYDAVRKLLAAGEPVEDPYVTGRETAQCCGGPIESLFPEVARKIAEARVRDLSRLSNKVVVQCPICYINLRRASGGRIELYHLAEVLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBF3</accession>
    <name>B1YBF3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Natural resistance-associated macrophage protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0333</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349705.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBF3"/>
    <dbReference type="STRING" id="444157.Tneu_0333"/>
    <dbReference type="GeneID" id="6164886"/>
    <dbReference type="KEGG" id="tne:Tneu_0333"/>
    <dbReference type="eggNOG" id="arCOG04531">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020088_6_3_2"/>
    <dbReference type="OrthoDB" id="211791at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015086">
        <property type="term" value="F:cadmium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005384">
        <property type="term" value="F:manganese ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034755">
        <property type="term" value="P:iron ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001046">
        <property type="entry name" value="NRAMP_fam"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF037982">
        <property type="entry name" value="Nramp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11706:SF33">
        <property type="entry name" value="NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11706">
        <property type="entry name" value="SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01566">
        <property type="entry name" value="Nramp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00447">
        <property type="entry name" value="NATRESASSCMP"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="40"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="81"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="106"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="135"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="178"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="218"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="257"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="300"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="326"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="373" mass="38563" checksum="665BBA8E36E265C6" modified="2008-05-20" version="1">MRGLLRLIGPATIVSVAYIDPGNWGANIAAGSRFGLDLLWVVWLSGAMAIYFQYLAGLLGIKEGGLLELFETRLKRFKPALAPPLVAVVLATDMAEYMGLIIALHILLGLGFAEAALLGFVDVALLALIADRRGLYSAVIGGMVAAVGLSFLAELAIVGVNWGEVLKHSVTPQLDNGAGVVAAAILGATVMPHALILHSHLAKGLPRRWHRDQTVANLAGASLINAAIQITAAAALGGREVDLAAVPNVLAPLYGPASAVLFSTALLLSSLSASAVSAEAGALAARYITGRRLEKWQTRLAARAVNALPAAAALAAGASPLDLLVYSQYALSLTLPLYLALITAWTWKHLAPAGRAAALAATAAAIALDLYSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBG0</accession>
    <name>B1YBG0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">anthranilate synthase</fullName>
            <ecNumber evidence="3">4.1.3.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1845</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>chorismate + L-glutamine = anthranilate + pyruvate + L-glutamate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21732"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="4.1.3.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 1/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the anthranilate synthase component I family.</text>
    </comment>
    <dbReference type="EC" id="4.1.3.27" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351181.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBG0"/>
    <dbReference type="STRING" id="444157.Tneu_1845"/>
    <dbReference type="GeneID" id="6164746"/>
    <dbReference type="KEGG" id="tne:Tneu_1845"/>
    <dbReference type="eggNOG" id="arCOG02014">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006493_7_1_2"/>
    <dbReference type="OrthoDB" id="25514at2157"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004049">
        <property type="term" value="F:anthranilate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:L-tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.120.10">
        <property type="entry name" value="Anthranilate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005801">
        <property type="entry name" value="ADC_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019999">
        <property type="entry name" value="Anth_synth_I-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015890">
        <property type="entry name" value="Chorismate_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11236">
        <property type="entry name" value="AMINOBENZOATE/ANTHRANILATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11236:SF9">
        <property type="entry name" value="ANTHRANILATE SYNTHASE COMPONENT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00425">
        <property type="entry name" value="Chorismate_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00095">
        <property type="entry name" value="ANTSNTHASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56322">
        <property type="entry name" value="ADC synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="Chorismate-utilising enzyme C-terminal" evidence="6">
        <location>
            <begin position="93"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00047683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="351" mass="38777" checksum="901E2B7A720BFC00" modified="2008-05-20" version="1">MGARAYFEYGGRRVYVEGRAVYSLEEAAAEARRGRAVVGVFAFDAVSPWDDGFRPPPRPGWPTYLFVVGEEGEPPAWGGDYGARLVYEEPRDLFERRVAEAKRALEAGEVFQLVVARFRRYRFAGSPEALFNAVRKTVGGKYYYFVEVDGLFLVGASPETLVSCWGGRAVSGPIGGTRPRGRTPEEDAALEAELRESVKDKAEHIMLVDSVRNDLGRVCRWGTVSVSSMLAVEKYSHYQHLVSYVECQLDKFYRPVDAVRALNPTTTVSGVPKPRALELLSQLEEPRGPFAGSVGVIARDGVEFAVVIRSVYGIDGDLYLWAGAGIVTDSKPHAEWEETEVKMAPLAKLLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBG1</accession>
    <name>B1YBG1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1846</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351182.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBG1"/>
    <dbReference type="STRING" id="444157.Tneu_1846"/>
    <dbReference type="GeneID" id="6164780"/>
    <dbReference type="KEGG" id="tne:Tneu_1846"/>
    <dbReference type="eggNOG" id="arCOG05637">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1029028_0_0_2"/>
    <dbReference type="OrthoDB" id="24363at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="270" mass="30199" checksum="5B61DA80FD72ADC5" modified="2008-05-20" version="1">MCTLYGREGYHALFLKPIAAALGCRYVALDYLTLYRRFKGRAEGIYYIEEPWVYARDTYAPEPAGQLPPQLGYLRRRMYPLLGNVHVFFTDGIYGYATEAPCGRVGLLAKEGEPMVTDLLLPLYLETGSVEKALAAAKRLYRCGLPGSREELVEGVKAGRYAAGYIWLAWAAGLDVELRPYPTAGWTLSGFWGLAFLEAPLYVHGHPPPYLERLKGRARRLVEAAKPARGRGWMEFVEAAHVAVAQYLRGALPLDAAVKVLREIENRLET</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBG7</accession>
    <name>B1YBG7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1854</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351188.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBG7"/>
    <dbReference type="STRING" id="444157.Tneu_1854"/>
    <dbReference type="GeneID" id="6164807"/>
    <dbReference type="KEGG" id="tne:Tneu_1854"/>
    <dbReference type="eggNOG" id="arCOG03769">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2152705_0_0_2"/>
    <dbReference type="OrthoDB" id="27021at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="110" mass="11927" checksum="8DAC8F54BBBBDAB1" modified="2008-05-20" version="1">MSLAKEVLGLVVGWLVSTIAVWLALKVFPGRQKREDLAGAALTALVGAVIYWVIHAVVKIPFVGGVVAFFVWLYALRKLQGVGWLGALGLAILIWIFNGLFSLLLPTLKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBH0</accession>
    <name>B1YBH0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1857</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351191.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBH0"/>
    <dbReference type="STRING" id="444157.Tneu_1857"/>
    <dbReference type="GeneID" id="6164822"/>
    <dbReference type="KEGG" id="tne:Tneu_1857"/>
    <dbReference type="eggNOG" id="arCOG03763">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_180513_0_0_2"/>
    <dbReference type="OrthoDB" id="27838at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="101" mass="11072" checksum="CF7F952E1BFBFD2D" modified="2008-05-20" version="1">MELATLLRGVCSRCGRPFLLEASPGLSVFCPSCGHPIDEARCERTSVVKLGDCEVRDWDRLAALSPTTQQMVLQALESGRAPRELYPVLLKLREVGALICT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBH8</accession>
    <name>B1YBH8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphoesterase DHHA1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1865</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351199.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBH8"/>
    <dbReference type="STRING" id="444157.Tneu_1865"/>
    <dbReference type="GeneID" id="6164827"/>
    <dbReference type="KEGG" id="tne:Tneu_1865"/>
    <dbReference type="eggNOG" id="arCOG00424">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071985_0_0_2"/>
    <dbReference type="OrthoDB" id="36101at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.310.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1640.10">
        <property type="entry name" value="inorganic pyrophosphatase (n-terminal core)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001667">
        <property type="entry name" value="DDH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038763">
        <property type="entry name" value="DHH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003156">
        <property type="entry name" value="DHHA1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052968">
        <property type="entry name" value="Nucleotide_metab_enz"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42146">
        <property type="entry name" value="3',5'-CYCLIC-NUCLEOTIDE PHOSPHODIESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42146:SF1">
        <property type="entry name" value="OLIGORIBONUCLEASE NRNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01368">
        <property type="entry name" value="DHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02272">
        <property type="entry name" value="DHHA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64182">
        <property type="entry name" value="DHH phosphoesterases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDH" evidence="1">
        <location>
            <begin position="6"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="DHHA1" evidence="2">
        <location>
            <begin position="228"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="311" mass="34214" checksum="10655C53AD66EC39" modified="2008-05-20" version="1">MGRVLTVFAHGDADGVCSAAVVVAALAGEYEEVEVYFTHPVDLLKDFREFARGDVYIVDVAIDEKAAEEAGRVFAGYGGRVVYVDHHPLSADLPRVEVVHEVGSSASELAYRLLGGRLPKSYSRVALYGAISDYMDHTPWVREALEAWDRRIIYFEAGVLMQGLERARKDHDFKREVVRHLAKNLPPSAMARLMKMAEEQARVNEELVWWVERNVSLRGSVALVVNPPGPLGLAANLARGLAGAEVGVAAEARGDMYVVSLRSRGLDLNAFLRDFARRYGVSGGGHPNAAGARIPRDLLPVLVEELSRLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBL4</accession>
    <name>B1YBL4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1901</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351235.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBL4"/>
    <dbReference type="STRING" id="444157.Tneu_1901"/>
    <dbReference type="GeneID" id="6164887"/>
    <dbReference type="KEGG" id="tne:Tneu_1901"/>
    <dbReference type="eggNOG" id="arCOG00938">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009273_4_0_2"/>
    <dbReference type="OrthoDB" id="30736at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd21123">
        <property type="entry name" value="SPASM_MftC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017200">
        <property type="entry name" value="PqqE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050377">
        <property type="entry name" value="Radical_SAM_PqqE_MftC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR04053">
        <property type="entry name" value="TIGR04053 family radical SAM/SPASM domain-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11228">
        <property type="entry name" value="RADICAL SAM DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11228:SF34">
        <property type="entry name" value="TUNGSTEN-CONTAINING ALDEHYDE FERREDOXIN OXIDOREDUCTASE COFACTOR MODIFYING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037420">
        <property type="entry name" value="PQQ_syn_pqqE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01386">
        <property type="entry name" value="main_SPASM_domain-containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01067">
        <property type="entry name" value="SPASM/twitch_domain_containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="12"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="368" mass="40981" checksum="F6AB4D216996CA34" modified="2008-05-20" version="1">MRGIRELIERFHSAPLIVFWESTKACPLACKHCRADAILRPLPGELNTEEGKRLIEQVASFGDPKPLLVITGGDPLMRNDLFDLVDYAVQLGVPTSLAPAVSPNLSPETLKAIREHGVKAISISLDGAREETHDEIRGVPGSFRNTLAAIKAAVDAGVQVQVNTVVWRKSLPELPEVVKLITDLGVKTWEVFFLIVTGRAREELDISPEEYEAAVQFLVDVSTYGIQVRTVEAPFYRRAKLERLEGKTYDSPLYRKLVERLGELMGPPRRGVDPTVVPTRDGFGIIFVAYDGTVYPSGFLPYPLGNVRRRSLVEIYRDHPLLQKMRRGEFGGRCGVCKYKDICGGSRARAFAYFKDPLAEDPACVYKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBN9</accession>
    <name>B1YBN9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1926</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351260.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBN9"/>
    <dbReference type="STRING" id="444157.Tneu_1926"/>
    <dbReference type="GeneID" id="6164862"/>
    <dbReference type="KEGG" id="tne:Tneu_1926"/>
    <dbReference type="eggNOG" id="arCOG00951">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048071_0_0_2"/>
    <dbReference type="OrthoDB" id="371936at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040088">
        <property type="entry name" value="MJ0103-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050377">
        <property type="entry name" value="Radical_SAM_PqqE_MftC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11228:SF35">
        <property type="entry name" value="MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11228">
        <property type="entry name" value="RADICAL SAM DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01067">
        <property type="entry name" value="SPASM/twitch_domain_containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01110">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="25"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="347" mass="38066" checksum="340989E6CDFD034C" modified="2008-05-20" version="1">MGGRPLYRVGAEVPQVGALAFGVVDRGTNVLEVRPTSVCALSCVFCSVNAGPASRARWAEYEVEVEALLAALEEVVRYKGVDDVEVHVDGMGDPGNYPHLAELIEGAKSIKGVALVSMQTRLYMLDERKLEELAKAGLDRINVSIDALDRALAKRLAGAEWYDVEKVLRLVEAALGAGINVVVSPVWVPGLNDGEMPKIVRWAVEKGVGKGVHTPVLIQKYIPHKRGRRVKARPMTWGEFWRRLKGLERELGVPLTPRPGEYNIHKAPPLPTPYKVGESVAVELVARGIFRGEMLGVPVARRGSAVWDRVFTVALGRGASDELVGRRIKVRVLENRHNIYIATPEGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBR3</accession>
    <name>B1YBR3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sulfur relay protein, TusE/DsrC/DsvC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0347</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DsrC/TusE family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_011761927.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBR3"/>
    <dbReference type="STRING" id="444157.Tneu_0347"/>
    <dbReference type="GeneID" id="6165312"/>
    <dbReference type="KEGG" id="tne:Tneu_0347"/>
    <dbReference type="eggNOG" id="arCOG04486">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_153199_1_0_2"/>
    <dbReference type="OrthoDB" id="23307at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097163">
        <property type="term" value="F:sulfur carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002143">
        <property type="term" value="P:tRNA wobble position uridine thiolation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.370">
        <property type="entry name" value="DsrC-like protein, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042072">
        <property type="entry name" value="DsrC-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025526">
        <property type="entry name" value="DsrC-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043163">
        <property type="entry name" value="DsrC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007453">
        <property type="entry name" value="DsrC/TusE"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03342">
        <property type="entry name" value="dsrC_tusE_dsvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37010">
        <property type="entry name" value="SULFURTRANSFERASE TUSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37010:SF1">
        <property type="entry name" value="SULFURTRANSFERASE TUSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04358">
        <property type="entry name" value="DsrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006223">
        <property type="entry name" value="DsrC_TusE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69721">
        <property type="entry name" value="DsrC, the gamma subunit of dissimilatory sulfite reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="111" mass="12658" checksum="CA45687DAD96892A" modified="2008-05-20" version="1">MPVKCPGEYKVDDVTIILDEECFLSNPEVWNEKVAEWMARELEGIQKMTEDHWKVVKYLREYWETYGVCPPIKMLLKETGFTLEQIYQLFPSGPANGACKVAGAPKPTGCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBZ8</accession>
    <name>B1YBZ8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0434</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349802.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBZ8"/>
    <dbReference type="STRING" id="444157.Tneu_0434"/>
    <dbReference type="GeneID" id="6166130"/>
    <dbReference type="KEGG" id="tne:Tneu_0434"/>
    <dbReference type="eggNOG" id="arCOG03748">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1792196_0_0_2"/>
    <dbReference type="OrthoDB" id="29244at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="143" mass="15722" checksum="A2487B99674D5AE6" modified="2008-05-20" version="1">MEFKPIYYAALESLSRGGKTAGELAEELDLEPHDAEAVLAALAEAGLVEKTQRGLLAKKTVYSLTPQGWRTLAQWREKAREDVEKAAELRRAGREEEAEQILQLYEPAIPLMLAAGILNTALLTALALEELEAADGWDQDVAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC12</accession>
    <name>B1YC12_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF2153 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1951</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351285.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC12"/>
    <dbReference type="STRING" id="444157.Tneu_1951"/>
    <dbReference type="GeneID" id="6164441"/>
    <dbReference type="KEGG" id="tne:Tneu_1951"/>
    <dbReference type="eggNOG" id="arCOG04123">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_142667_0_0_2"/>
    <dbReference type="OrthoDB" id="26708at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014450">
        <property type="entry name" value="UCP008210"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09921">
        <property type="entry name" value="DUF2153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF008210">
        <property type="entry name" value="UCP008210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="12"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="154" mass="18057" checksum="609CE8B08F77F3A2" modified="2008-05-20" version="1">MTHKSPTSEAVLEYLESMMERLEQWVKEQERQVKELESHGDAMKTADRLELLYSAQAMLGYIARVLKDFESWLSNPVVTSVMPEDMLRRLEAMLREVAIKFVQVDIAHTSEYRELLSKFAREGKVPSVLLLYIQQRPQPPQRRRGEEGETPRFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC16</accession>
    <name>B1YC16_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1955</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351289.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC16"/>
    <dbReference type="STRING" id="444157.Tneu_1955"/>
    <dbReference type="GeneID" id="6164570"/>
    <dbReference type="KEGG" id="tne:Tneu_1955"/>
    <dbReference type="eggNOG" id="arCOG01357">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032214_0_0_2"/>
    <dbReference type="OrthoDB" id="358785at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="entry name" value="tm_1862 like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42731:SF4">
        <property type="entry name" value="RADICAL SAM DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42731">
        <property type="entry name" value="SLL1084 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01082">
        <property type="entry name" value="B12-binding_domain_containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="2">
        <location>
            <begin position="223"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="495"/>
            <end position="522"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="531" mass="60769" checksum="E7AC572D11CE38C6" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="98" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC24</accession>
    <name>B1YC24_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">DNA-directed RNA polymerase subunit beta</fullName>
            <ecNumber evidence="15">2.7.7.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="23" type="ordered locus">Tneu_1963</name>
    </gene>
    <organism evidence="23 24">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="23" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="23">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="12">Part of the RNA polymerase complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the RNA polymerase beta chain family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="15"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351297.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC24"/>
    <dbReference type="SMR" id="B1YC24"/>
    <dbReference type="STRING" id="444157.Tneu_1963"/>
    <dbReference type="GeneID" id="6164367"/>
    <dbReference type="KEGG" id="tne:Tneu_1963"/>
    <dbReference type="eggNOG" id="arCOG01762">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000524_5_0_2"/>
    <dbReference type="OrthoDB" id="6009at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032549">
        <property type="term" value="F:ribonucleoside binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00653">
        <property type="entry name" value="RNA_pol_B_RPB2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.270.10:FF:000011">
        <property type="entry name" value="DNA-directed RNA polymerase subunit beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1100.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.270.10">
        <property type="entry name" value="DNA-directed RNA polymerase, subunit 2, domain 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1800.10">
        <property type="entry name" value="RNA polymerase alpha subunit dimerisation domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1110.10">
        <property type="entry name" value="RNA polymerase Rpb2, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015712">
        <property type="entry name" value="DNA-dir_RNA_pol_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007120">
        <property type="entry name" value="DNA-dir_RNAP_su2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037033">
        <property type="entry name" value="DNA-dir_RNAP_su2_hyb_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007121">
        <property type="entry name" value="RNA_pol_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007644">
        <property type="entry name" value="RNA_pol_bsu_protrusion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007642">
        <property type="entry name" value="RNA_pol_Rpb2_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037034">
        <property type="entry name" value="RNA_pol_Rpb2_2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007645">
        <property type="entry name" value="RNA_pol_Rpb2_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007646">
        <property type="entry name" value="RNA_pol_Rpb2_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007647">
        <property type="entry name" value="RNA_pol_Rpb2_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007641">
        <property type="entry name" value="RNA_pol_Rpb2_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014724">
        <property type="entry name" value="RNA_pol_RPB2_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019969">
        <property type="entry name" value="RNAP_Rpo2"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006335">
        <property type="entry name" value="PRK08565.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF007175">
        <property type="entry name" value="PRK09606.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03670">
        <property type="entry name" value="rpoB_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20856">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04563">
        <property type="entry name" value="RNA_pol_Rpb2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04561">
        <property type="entry name" value="RNA_pol_Rpb2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04565">
        <property type="entry name" value="RNA_pol_Rpb2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04566">
        <property type="entry name" value="RNA_pol_Rpb2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04567">
        <property type="entry name" value="RNA_pol_Rpb2_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00562">
        <property type="entry name" value="RNA_pol_Rpb2_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04560">
        <property type="entry name" value="RNA_pol_Rpb2_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64484">
        <property type="entry name" value="beta and beta-prime subunits of DNA dependent RNA-polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01166">
        <property type="entry name" value="RNA_POL_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 15" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 15" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="24" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 15" id="KW-0804">Transcription</keyword>
    <keyword evidence="6 15" id="KW-0808">Transferase</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="RNA polymerase beta subunit protrusion" evidence="19">
        <location>
            <begin position="36"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="domain" description="RNA polymerase Rpb2" evidence="18">
        <location>
            <begin position="197"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="domain" description="RNA polymerase Rpb2" evidence="20">
        <location>
            <begin position="433"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="domain" description="RNA polymerase Rpb2" evidence="21">
        <location>
            <begin position="531"/>
            <end position="590"/>
        </location>
    </feature>
    <feature type="domain" description="RNA polymerase Rpb2" evidence="22">
        <location>
            <begin position="611"/>
            <end position="638"/>
        </location>
    </feature>
    <feature type="domain" description="DNA-directed RNA polymerase subunit 2 hybrid-binding" evidence="16">
        <location>
            <begin position="659"/>
            <end position="1029"/>
        </location>
    </feature>
    <feature type="domain" description="RNA polymerase Rpb2" evidence="17">
        <location>
            <begin position="1031"/>
            <end position="1121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00025838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00048552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU000434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU363031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF00562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF04560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF04561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF04563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="Pfam" id="PF04565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="Pfam" id="PF04566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="22">
        <source>
            <dbReference type="Pfam" id="PF04567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="EMBL" id="ACB40878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="24">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="1127" mass="126687" checksum="422F1C0F7EF39A7B" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC94</accession>
    <name>B1YC94_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glycosyltransferase RgtA/B/C/D-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC94"/>
    <dbReference type="STRING" id="444157.Tneu_0460"/>
    <dbReference type="KEGG" id="tne:Tneu_0460"/>
    <dbReference type="eggNOG" id="arCOG05429">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_654917_0_0_2"/>
    <dbReference type="OrthoDB" id="29291at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="184"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="222"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="250"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="419" mass="44976" checksum="C55B1319A3322F32" modified="2008-05-20" version="1">MLPLYIPYLCFYLQQLWLNASWLPRGDDYPIHVYFALLLRGDPAAVFTTPWEYPGIPHLLGLLWGDPLALGRAFAVYAAALALLGVALYGLYFKAAGVPAPFLASFYLVTASVRTLAGLVDGQIADKTVLLVFVPLSLYLYARGRPAAAVAALAPSIFTNYLGVAYGGLLSVMYAVYGGRRARLALAVYIALVAVLLWHKALSVLELAGQAASAPPMPWDPGWGLVYAFYGSSPAVLIPLALLGLRKRAVAPLAAASLLLLVIGAASSAYGERLYRVAALLLPASAAASGWTGLALAAYSAFPAAGGWAWALGALPGLYQPVDRITPGQLDAYRAVLAALPSNSTVEVQWSLDPWLLPLAYAYRPDVRVNLTACRWTRADFYVYTPPDPRQWYMPCIREVGPPPGVRVASWGSTALYRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCB1</accession>
    <name>B1YCB1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">dTDP-4-dehydrorhamnose reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0477</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCB1"/>
    <dbReference type="STRING" id="444157.Tneu_0477"/>
    <dbReference type="KEGG" id="tne:Tneu_0477"/>
    <dbReference type="eggNOG" id="arCOG01367">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045518_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd05254">
        <property type="entry name" value="dTDP_HR_like_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005913">
        <property type="entry name" value="dTDP_dehydrorham_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029903">
        <property type="entry name" value="RmlD-like-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01214">
        <property type="entry name" value="rmlD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10491">
        <property type="entry name" value="DTDP-4-DEHYDRORHAMNOSE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10491:SF4">
        <property type="entry name" value="METHIONINE ADENOSYLTRANSFERASE 2 SUBUNIT BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04321">
        <property type="entry name" value="RmlD_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RmlD-like substrate binding" evidence="1">
        <location>
            <begin position="1"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="279" mass="30552" checksum="929CB432C503066F" modified="2008-05-20" version="1">MVTGAGGLLGWWVARELAERGYRVYGVYRERGGGLEGVEWVRADLEAGVPEVVRQADVVVHAAAYTDVDGCEVDRARAYRANFLATLAVARAARRVVYISTDYVFDGERGMYREGDVPNPVNYYGLSKLLGEGPVLARGGVVVRVSGLFGVSPHGKRNFGVEALLRLRRGEEVRAFVDQRLSPTYVPFLAERLADLLERDVEGVLHIAGEPATRFEFAVALAEALGVDRGLVKPARLSEARLAARRPRDSSLDTSRAASMGLSLPPLREALRHFVKYAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCC1</accession>
    <name>B1YCC1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0487</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349854.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCC1"/>
    <dbReference type="STRING" id="444157.Tneu_0487"/>
    <dbReference type="GeneID" id="6165935"/>
    <dbReference type="KEGG" id="tne:Tneu_0487"/>
    <dbReference type="eggNOG" id="arCOG01383">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1821090_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="141" mass="15441" checksum="A3A98A94AC65D08D" modified="2008-05-20" version="1">MSGSKYDILAIVVNYNSNHILPIEKLLLKTLDRLSDLKSLKLVLIDNGSTDGSLQELEKEIKELKLDDAVLTAPGLALGAYSAAMYLTGVKTYVKALAATALTAAGINTILIALLALYLKRMEYRITRIMRLSTRKICTTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCD5</accession>
    <name>B1YCD5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Syntaxin domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0505</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCD5"/>
    <dbReference type="STRING" id="444157.Tneu_0505"/>
    <dbReference type="KEGG" id="tne:Tneu_0505"/>
    <dbReference type="eggNOG" id="arCOG03724">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_109669_2_1_2"/>
    <dbReference type="OrthoDB" id="26995at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029191">
        <property type="entry name" value="Uds1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15456">
        <property type="entry name" value="Uds1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Up-regulated during septation protein 1" evidence="2">
        <location>
            <begin position="45"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="46"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF15456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="147" mass="16858" checksum="989C0B0CE4FF4C5B" modified="2008-05-20" version="1">MDSMAPVAQEALRIAVDKVVEKLKEGKKLTTKDISLLYLGTIVNELGGIRGEIARLEQRMEEMNKRIDETNKRIDTVAESLSRRIDETNKRIDETNKRIDETNKRIDAVAAELSRRIDAPSARLDDVQKTLLEIQRLLMELLKTRQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCD7</accession>
    <name>B1YCD7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HEPN domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0507</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349870.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCD7"/>
    <dbReference type="STRING" id="444157.Tneu_0507"/>
    <dbReference type="GeneID" id="6165927"/>
    <dbReference type="KEGG" id="tne:Tneu_0507"/>
    <dbReference type="eggNOG" id="arCOG01191">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_123170_1_0_2"/>
    <dbReference type="OrthoDB" id="101044at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.330">
        <property type="entry name" value="Nucleotidyltransferases domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007842">
        <property type="entry name" value="HEPN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05168">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00748">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81593">
        <property type="entry name" value="Nucleotidyltransferase substrate binding subunit/domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50910">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HEPN" evidence="1">
        <location>
            <begin position="10"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="124" mass="14474" checksum="60BEEDC2420AF50E" modified="2008-05-20" version="1">MGREEVEILRERAFAFLEAAEDDLRAGRVDIAAFHCEQAVQLALKYVLAREAGYFPHTHSLRRLFEEAREVRPDLWDLYVEHRYAFEVMEDAYIGARYLPRRYARDVAEGLLEVAKELVKRACG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCH1</accession>
    <name>B1YCH1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="15">3-hydroxyacyl-CoA dehydrogenase NAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Tneu_0541</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Lipid metabolism; fatty acid beta-oxidation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Peroxisome</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349904.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCH1"/>
    <dbReference type="STRING" id="444157.Tneu_0541"/>
    <dbReference type="GeneID" id="6165665"/>
    <dbReference type="KEGG" id="tne:Tneu_0541"/>
    <dbReference type="eggNOG" id="arCOG00249">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010448_2_1_2"/>
    <dbReference type="OrthoDB" id="39812at2157"/>
    <dbReference type="UniPathway" id="UPA00659"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003857">
        <property type="term" value="F:(3S)-3-hydroxyacyl-CoA dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004300">
        <property type="term" value="F:enoyl-CoA hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd06558">
        <property type="entry name" value="crotonase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.226.10:FF:000009">
        <property type="entry name" value="Carnitinyl-CoA dehydratase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000009">
        <property type="entry name" value="Fatty oxidation complex, alpha subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.12.10:FF:000001">
        <property type="entry name" value="Probable enoyl-CoA hydratase, mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.226.10">
        <property type="entry name" value="2-enoyl-CoA Hydratase, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="entry name" value="Lyase 2-enoyl-coa Hydratase, Chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="entry name" value="N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase, domain 2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006176">
        <property type="entry name" value="3-OHacyl-CoA_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006108">
        <property type="entry name" value="3HC_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23309">
        <property type="entry name" value="3-HYDROXYACYL-COA DEHYROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23309:SF49">
        <property type="entry name" value="PEROXISOMAL BIFUNCTIONAL ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00725">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02737">
        <property type="entry name" value="3HCDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="6-phosphogluconate dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="ClpP/crotonase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="11" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="7" id="KW-0520">NAD</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-0576">Peroxisome</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3-hydroxyacyl-CoA dehydrogenase NAD binding" evidence="14">
        <location>
            <begin position="3"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="3-hydroxyacyl-CoA dehydrogenase C-terminal" evidence="13">
        <location>
            <begin position="188"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="domain" description="3-hydroxyacyl-CoA dehydrogenase C-terminal" evidence="13">
        <location>
            <begin position="306"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB39484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="661" mass="72407" checksum="547BBEAC8F790D32" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCH4</accession>
    <name>B1YCH4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphate uptake regulator, PhoU</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0544</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349907.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCH4"/>
    <dbReference type="STRING" id="444157.Tneu_0544"/>
    <dbReference type="GeneID" id="6165717"/>
    <dbReference type="KEGG" id="tne:Tneu_0544"/>
    <dbReference type="eggNOG" id="arCOG00232">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078518_3_2_2"/>
    <dbReference type="OrthoDB" id="7738at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030643">
        <property type="term" value="P:intracellular phosphate ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045936">
        <property type="term" value="P:negative regulation of phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="entry name" value="Phosphate transport system protein phou homolog 2, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028366">
        <property type="entry name" value="PhoU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026022">
        <property type="entry name" value="PhoU_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42930">
        <property type="entry name" value="PHOSPHATE-SPECIFIC TRANSPORT SYSTEM ACCESSORY PROTEIN PHOU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42930:SF3">
        <property type="entry name" value="PHOSPHATE-SPECIFIC TRANSPORT SYSTEM ACCESSORY PROTEIN PHOU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01895">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109755">
        <property type="entry name" value="PhoU-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PhoU" evidence="1">
        <location>
            <begin position="20"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="PhoU" evidence="1">
        <location>
            <begin position="111"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="202" mass="22744" checksum="18A1312FFF448470" modified="2008-05-20" version="1">MRRLLDLAEAEISERLREGAKLAMEALSMALRGDAPSSSVREIASKLHEIHHEVSDLVMEAVARYSPVATDLRFLKGALFVSYDLYRVARYAYDIAVVFEKLGGGCASERLRKVGGVVMEMVAASVEMFLSRDISRLGEVERLDDEVVDKSYEEALMEVLRGSERCRVVEMVILRLLERASDHAVYIANHAYYLLTGQTRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCH7</accession>
    <name>B1YCH7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0547</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349910.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCH7"/>
    <dbReference type="STRING" id="444157.Tneu_0547"/>
    <dbReference type="GeneID" id="6165702"/>
    <dbReference type="KEGG" id="tne:Tneu_0547"/>
    <dbReference type="eggNOG" id="arCOG01274">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_2_0_2"/>
    <dbReference type="OrthoDB" id="30958at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482:SF10">
        <property type="entry name" value="HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT PROTEIN BRAE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="78"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="124"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="159"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="209"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="249"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="285"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="321" mass="33536" checksum="292A703D610DF8CA" modified="2008-05-20" version="1">MKPYLPLGIYALLAAAAFLNPEYAKTIASVAFFMALGQAVNVFVGLTGYVDFGYVAFLAMGAYGLGVTIYYWPELGLSALPVGLALGVAMAALLAAAVGAIALRLRGAYFAIATIGVNEGVKHLIIGANIWGGGAGLILGTKMFSAFGRDLALTLANVGSPLLIVATGFLAVVATYLIQAGKSGYALAAVRQDEDAAKAMGINPTRYKLLAFTTSASLSGLLGAAYYPLGNMQVFPENVFYVEYILDGLAVMFLGGAGTVTGPIVGGLIYFYLRSVVGAFLPGYQALATALLVFIVVVAMPRGIVGTLRMYMPPRLREWLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="31" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCJ0</accession>
    <name>B1YCJ0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0561</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCJ0"/>
    <dbReference type="KEGG" id="tne:Tneu_0561"/>
    <dbReference type="HOGENOM" id="CLU_2313900_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="99" mass="11661" checksum="AE99E8B92C03DB6F" modified="2008-05-20" version="1">MRQMFLLSFDFWKYVVGGELLELLSEFLLSFDFWSPSMRLSTPSATYSRFYYLLISGAEDEEAEAVILQEAMFLLSFDFWPLIVAYKASWAFKYVSTIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="42" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCJ7</accession>
    <name>B1YCJ7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0568</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349930.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCJ7"/>
    <dbReference type="STRING" id="444157.Tneu_0568"/>
    <dbReference type="GeneID" id="6165791"/>
    <dbReference type="KEGG" id="tne:Tneu_0568"/>
    <dbReference type="eggNOG" id="arCOG09817">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1500337_0_0_2"/>
    <dbReference type="OrthoDB" id="30401at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="182" mass="20355" checksum="72E42B0A61755CAC" modified="2008-05-20" version="1">MVLLVVLPCGRLAELERLLNCGSVREVGDVARCEGPYSIYLNYVERCDRGLPIAGTPAGSAGEGELCYVGIVLTKYWASDWEYMSDKAESEVAQHAEELLPKVAQLAYMAVATRAPSVRRETDDVVYRHMLWVWVRRGWEACGKAWKIAAFAALDSPWDQALAYEDSMLRGEEKYGGVFIKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCK6</accession>
    <name>B1YCK6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">CRISPR-associated endoribonuclease Cas2</fullName>
            <ecNumber evidence="8">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">cas2</name>
        <name evidence="9" type="ordered locus">Tneu_0577</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer, forms a heterotetramer with a Cas1 homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the CRISPR-associated endoribonuclease Cas2 protein family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349939.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCK6"/>
    <dbReference type="STRING" id="444157.Tneu_0577"/>
    <dbReference type="GeneID" id="6165692"/>
    <dbReference type="KEGG" id="tne:Tneu_0577"/>
    <dbReference type="eggNOG" id="arCOG04194">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_161124_2_3_2"/>
    <dbReference type="OrthoDB" id="75992at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:RNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01471">
        <property type="entry name" value="Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021127">
        <property type="entry name" value="CRISPR_associated_Cas2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019199">
        <property type="entry name" value="Virulence_VapD/CRISPR_Cas2"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01573">
        <property type="entry name" value="cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34405">
        <property type="entry name" value="CRISPR-ASSOCIATED ENDORIBONUCLEASE CAS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34405:SF3">
        <property type="entry name" value="CRISPR-ASSOCIATED ENDORIBONUCLEASE CAS2 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09827">
        <property type="entry name" value="CRISPR_Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143430">
        <property type="entry name" value="TTP0101/SSO1404-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="4 8" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 8" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="8">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="95" mass="10905" checksum="FF56AE3790B15F5A" modified="2008-05-20" version="1">MIWLAVYDIEDDGERAKAAAVLQEWGFVRVQRSFYVGRLERGRAKDLLHILSRYVKRGHIALIPVSREQLEAALELGKPPYAPLKPPRYAQAYVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCL3</accession>
    <name>B1YCL3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposase IS605 OrfB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0586</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349946.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCL3"/>
    <dbReference type="GeneID" id="6165612"/>
    <dbReference type="KEGG" id="tne:Tneu_0586"/>
    <dbReference type="eggNOG" id="arCOG00687">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053996_0_0_2"/>
    <dbReference type="OrthoDB" id="28072at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00065">
        <property type="entry name" value="FYVE_like_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010095">
        <property type="entry name" value="Cas12f1-like_TNB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07282">
        <property type="entry name" value="Cas12f1-like_TNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51998">
        <property type="entry name" value="PFL-like glycyl radical enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cas12f1-like TNB" evidence="2">
        <location>
            <begin position="329"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="413" mass="48498" checksum="BD9E5CF99A1EB5C2" modified="2008-05-20" version="1">MYAYRTLRVEIPWRLVEERPDVLDLVTRMRLAAEEYVRRLLKEVTGQEESGLTAEELDRLLTPDRRELAVKIIEEVFPKYDLKKYFVNQGKVFWRDVVFHRAVPLDAQLRIENERDVGRAVFVDLRSEVLKVRRLNETFVVRLRRNDIAWIRERLEEGAKLKLAFLGVERRRGREPTYGKLYIALVFARETAPVEPKAVVAVDVNRLDHGIMVGLLVDGKIVRRMRLLDEGAVRELRRLHEEISRLDERAAREADPARKRRLEDRARHLASKRFRKMRDVVIRIAGEIIKLAREHQAVIVLDTMEDESYRELKEGDGSGVRKHFLDGLGQLRRRLQTLAEWYGLPYLEERLYSTICPRCGAKMEGLSNRRMHCPSCGFSDHRDNVPLIWAKKRYWELLQKQPAFSATILLLTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCM7</accession>
    <name>B1YCM7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PaREP10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0601</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCM7"/>
    <dbReference type="KEGG" id="tne:Tneu_0601"/>
    <dbReference type="eggNOG" id="arCOG00746">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3003291_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="56" mass="6000" checksum="F218E140C3E0BB59" modified="2008-05-20" version="1">MDVCGVRGGGGPRVGVHAYTLARYGVDPHDDVETAVKKLEAKAPHLAQFLREVAQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCP7</accession>
    <name>B1YCP7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0621</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349980.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCP7"/>
    <dbReference type="GeneID" id="6166217"/>
    <dbReference type="KEGG" id="tne:Tneu_0621"/>
    <dbReference type="eggNOG" id="arCOG00505">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061385_0_0_2"/>
    <dbReference type="OrthoDB" id="197151at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd07726">
        <property type="entry name" value="ST1585-like_MBL-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050855">
        <property type="entry name" value="NDM-1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037482">
        <property type="entry name" value="ST1585_MBL-fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42951:SF4">
        <property type="entry name" value="ACYL-COENZYME A THIOESTERASE MBLAC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42951">
        <property type="entry name" value="METALLO-BETA-LACTAMASE DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallo-beta-lactamase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="266" mass="29151" checksum="E80D90D3923C15F9" modified="2008-05-20" version="1">MERVVRFLGGEPIVATYVFEVGGMRIAVDPGPASTLGSLEVDAVLCTHIHLDHCGSAGHLGKPAYVHERYVRHLVDPARLYEASLATLGVYAEVFGRPLPAREAVGVPDGARLFDAVDVFHTPGHAPHHVMYYYRDEKVLFVGDGAGVYIPELDVVIPTTPPPFRLQQYLESLSRVRGLDVDLLCFPHFACTRRVEILDVHREQIVGWVEALRDLVGGSVDDAVRAVAKVDENAAKVLQTGGLYADFFLRYSVAGLLDYLRSASSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCP8</accession>
    <name>B1YCP8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0622</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349981.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCP8"/>
    <dbReference type="STRING" id="444157.Tneu_0622"/>
    <dbReference type="GeneID" id="6166316"/>
    <dbReference type="KEGG" id="tne:Tneu_0622"/>
    <dbReference type="eggNOG" id="arCOG01717">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009600_0_3_2"/>
    <dbReference type="OrthoDB" id="7931at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="entry name" value="Amidase signature (AS) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020556">
        <property type="entry name" value="Amidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895:SF67">
        <property type="entry name" value="AMIDASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="TRANSAMIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="Amidase signature (AS) enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00571">
        <property type="entry name" value="AMIDASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="1">
        <location>
            <begin position="14"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="403" mass="42695" checksum="A060D69708687B87" modified="2008-05-20" version="1">MRGVEKALEEAKRRADLNHYLYINERAVDELELLRRSGRCGALCGVALAVKDNIEVAGMPTTNGAPYMKKMSDRTAPVVKTLLSEGAVVVGKTNMHELALGATNVNPHFGPAKNPHDPGRITGGSSGGSAGAVAVGAADLGIGTDTGGSVRIPAALCGVVGYKPPYGKIPTEGVLPLAQSLDHVGFLARTVKELVDVLSAVGWAPRGLQRPKRFRFAVLLGISEPTRYVEKAFWRAVAALESIGGERDEEFLNAARYSAARAALLLSEAAANYYGYLRSMGSQMGRDVATLLSAGAALPAVAYIVARRVKEEATAYFNSLFKKYDVVVTPTTATEAPRIEEVENVAVRPKLLAYTELFNLTGHPAISVPAPVSGLPVGLQIAAADEEVLLSIASAYEEEALLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCQ4</accession>
    <name>B1YCQ4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Signal-transduction protein with CBS domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0628</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349987.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCQ4"/>
    <dbReference type="STRING" id="444157.Tneu_0628"/>
    <dbReference type="GeneID" id="6166292"/>
    <dbReference type="KEGG" id="tne:Tneu_0628"/>
    <dbReference type="eggNOG" id="arCOG00631">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040681_12_1_2"/>
    <dbReference type="OrthoDB" id="43333at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd09836">
        <property type="entry name" value="CBS_pair_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="entry name" value="CBS-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051257">
        <property type="entry name" value="Diverse_CBS-Domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080:SF2">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="CBS-domain pair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="5"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="72"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="141" mass="15715" checksum="3E92C3B742260B4E" modified="2008-05-20" version="1">MLGDFAKVDVVKAYPSTPIREVARLMAERRVGLVVLVEPGNPHRVVGVVSERDIVRAVAQGVSLEEPCEVIATKNVVALDYRESVAKAAEAFRRYGIRHVVVTREGRLYGVLSIRDILREDSALREIASYYDWTFEPGMSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCT5</accession>
    <name>B1YCT5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH dehydrogenase (Quinone)</fullName>
            <ecNumber evidence="2">1.6.5.11</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0659</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.6.5.11" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350018.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCT5"/>
    <dbReference type="STRING" id="444157.Tneu_0659"/>
    <dbReference type="GeneID" id="6165142"/>
    <dbReference type="KEGG" id="tne:Tneu_0659"/>
    <dbReference type="eggNOG" id="arCOG01548">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015134_1_2_2"/>
    <dbReference type="OrthoDB" id="43567at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016651">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.645.10">
        <property type="entry name" value="Cytochrome-c3 Hydrogenase, chain B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001135">
        <property type="entry name" value="NADH_Q_OxRdtase_suD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022885">
        <property type="entry name" value="NDH1_su_D/H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029014">
        <property type="entry name" value="NiFe-Hase_large"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004739">
        <property type="entry name" value="PRK06075.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11993:SF10">
        <property type="entry name" value="NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11993">
        <property type="entry name" value="NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00346">
        <property type="entry name" value="Complex1_49kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56762">
        <property type="entry name" value="HydB/Nqo4-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADH-quinone oxidoreductase subunit D" evidence="1">
        <location>
            <begin position="136"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="402" mass="45502" checksum="1B5135392D742AD7" modified="2008-05-20" version="1">MIRQEDYGLVLREERLGGGRRVLDIFWGPQHPSSGHTRFIVEVDGDIVVNVTPDPGYVHRTMEKLGETRHWIQNIPLFERLSLPDAINVTWAYSMAVEKLAKLDVSPRAQYLRVIMGELSRISTHLYDLGLHAIMIGSSTGFMWGFGLRELLVQLWAMATGSRTTPSWVVPGGVRTAPPDAFYEQTRGFLEYLEKKVDEFVRVVVKNPVGYYRLKDVGYLSREDAARLMATGPAARASGIEWDARRVYKYGVYDELEWNVCVEDGGDSLARAMVRICEIRESVKIIRQALDRVPREGPLVGDAVLHRLPPKHKERANEHIKLGAFFTTTLPQAEGLGVSEGGRGRYFFHVFGDGTEKPYRVRISTPSWQNVRAMVKAFVGSRLMDLPAIYGSFGYFPPEQDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCT9</accession>
    <name>B1YCT9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0663</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350022.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCT9"/>
    <dbReference type="GeneID" id="6165146"/>
    <dbReference type="KEGG" id="tne:Tneu_0663"/>
    <dbReference type="eggNOG" id="arCOG03265">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_632564_0_0_2"/>
    <dbReference type="OrthoDB" id="28815at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="394"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="425" mass="45770" checksum="7C58BCF6BC394E49" modified="2008-05-20" version="1">MRLAFALLLTAVALGAVVEVRNGLGFPIPNATVCFQGRCVSTNASGVAVVPLGAEVEIYVGGLLTWKTYSSGHDVVTVSDIDHVSISPVNASGYVVLKIVKFLNGTYGELKIPFSNNKLERAIPVGGVDYPVEIYLTEVGGVRLRNATVVRRDLWNMGADLLALGLVERCTIASLSPVTRIAILQGNTTVASGAANVTAYLPRGASYLGVAETRVLLPNGDFYRAEFNPLLYCGRTIVVNASRLVIRAVDSFGVTRTDWTIYVAGRAYKGQAELWILPHDIYTVAVDAGFARRNLTVAASNPTEVLTVEVENAYLIFNYQQPVDKVYIVGNYTTVAQIPRRVELPPGTYKVYVEAGGRNSTYIVTLRPGETVQLTITPAKQGRGQEQTEAPTSYAFAGVVSAMALAALVAVAIGIRRRQRQGRGR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-09-23" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCY7</accession>
    <name>G1PDH_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glycerol-1-phosphate dehydrogenase [NAD(P)+]</fullName>
            <shortName evidence="1">G1P dehydrogenase</shortName>
            <shortName evidence="1">G1PDH</shortName>
            <ecNumber evidence="1">1.1.1.261</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Enantiomeric glycerophosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">sn-glycerol-1-phosphate dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">egsA</name>
        <name type="ordered locus">Tneu_0711</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1-phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>sn-glycerol 1-phosphate + NAD(+) = dihydroxyacetone phosphate + NADH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21412"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:57685"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.261"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>sn-glycerol 1-phosphate + NADP(+) = dihydroxyacetone phosphate + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21416"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:57685"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.261"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Membrane lipid metabolism; glycerophospholipid metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycerol-1-phosphate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.261" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350070.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCY7"/>
    <dbReference type="SMR" id="B1YCY7"/>
    <dbReference type="STRING" id="444157.Tneu_0711"/>
    <dbReference type="GeneID" id="6165664"/>
    <dbReference type="KEGG" id="tne:Tneu_0711"/>
    <dbReference type="eggNOG" id="arCOG00982">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038362_0_0_2"/>
    <dbReference type="OrthoDB" id="8656at2157"/>
    <dbReference type="UniPathway" id="UPA00940"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106357">
        <property type="term" value="F:glycerol-1-phosphate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106358">
        <property type="term" value="F:glycerol-1-phosphate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006650">
        <property type="term" value="P:glycerophospholipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08173">
        <property type="entry name" value="Gro1PDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1090.10">
        <property type="entry name" value="Dehydroquinate synthase-like - alpha domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00497_A">
        <property type="entry name" value="G1P_dehydrogenase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023002">
        <property type="entry name" value="G1P_dehydrogenase_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032837">
        <property type="entry name" value="G1PDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016205">
        <property type="entry name" value="Glycerol_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43616">
        <property type="entry name" value="GLYCEROL DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43616:SF5">
        <property type="entry name" value="GLYCEROL DEHYDROGENASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13685">
        <property type="entry name" value="Fe-ADH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000112">
        <property type="entry name" value="Glycerol_dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56796">
        <property type="entry name" value="Dehydroquinate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0444">Lipid biosynthesis</keyword>
    <keyword id="KW-0443">Lipid metabolism</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0520">NAD</keyword>
    <keyword id="KW-0521">NADP</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword id="KW-1208">Phospholipid metabolism</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_0000350662" description="Glycerol-1-phosphate dehydrogenase [NAD(P)+]">
        <location>
            <begin position="1"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="84"/>
            <end position="88"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="106"/>
            <end position="109"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="241"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="245"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="260"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00497"/>
        </source>
    </evidence>
    <sequence length="342" mass="36475" checksum="C75634FE8AF756A8" modified="2008-05-20" version="1">MKQLESFEIPRTVVFGPGAILKIPDIVSGLRVGKVLIISGKSATQQYAKTVASLLSGYSAEILKYDEVELEKSGFDLIIGVGGGRPLDMAKVYSYVHKRPLIVVPTSASHDGIASPYISYILAEKVKRYGKVVASPIAIVADTSIILSAPRRLLRAGVGDLLGKVVAVRDWQLAHRLKGEEYSEYAALLSLSSYRIVVANAGKIGNFVREEDVRALVKALIGCGVAMGIAGSSRPCSGSEHLFAHAIERRLEGAEGEAIHGELVALGAIVMAYLHGINWRRIKKAAGAVGLPTTLKQAGIDLDLAIEALTTAHTLRPDRYTILGDGLSASAARKALEDTELI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCZ9</accession>
    <name>B1YCZ9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">FAD-dependent pyridine nucleotide-disulphide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0723</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350082.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCZ9"/>
    <dbReference type="STRING" id="444157.Tneu_0723"/>
    <dbReference type="GeneID" id="6164743"/>
    <dbReference type="KEGG" id="tne:Tneu_0723"/>
    <dbReference type="eggNOG" id="arCOG01296">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031864_5_3_2"/>
    <dbReference type="OrthoDB" id="27340at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050097">
        <property type="entry name" value="Ferredoxin-NADP_redctase_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48105">
        <property type="entry name" value="THIOREDOXIN REDUCTASE 1-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00368">
        <property type="entry name" value="FADPNR"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00469">
        <property type="entry name" value="PNDRDTASEII"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD/NAD(P)-binding" evidence="3">
        <location>
            <begin position="5"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="321" mass="35191" checksum="AB65F6C7BBA3A1AC" modified="2008-05-20" version="1">MEADYDVIIIGAGIAGLSAALYASRQRLRTLVISRDLGGQLNMTTLIENYPAIPKISGPELAKRVEQQARSFGAEIIFDEVKTVEKGEGVFIVKTEGGDEYKTLAVILAFGKTPKELGVPGEAKFKNKGVSYCTICDAPFFKGQDIALVSWGDLAREPVTILSSVSNKFYWIYPSEKPIHDDEFIEQARRLGKAVFMPNSEVVEIKGDTKVRSIVVRNRKTGETQELPVAAVFVEVGYVTKSDFVKHLVDLNERGEIIADWEGRTKTPGVFAAGDIVAYPYKQAVISAAMGVAAALSATAYVMKIKGRPLHSLVDWRAEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD35</accession>
    <name>B1YD35_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Ornithine aminotransferase</fullName>
            <ecNumber evidence="3">2.6.1.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_0759</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-ornithine + 2-oxoglutarate = L-glutamate 5-semialdehyde + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:25160"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:58066"/>
            <dbReference type="EC" id="2.6.1.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.13" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350118.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD35"/>
    <dbReference type="STRING" id="444157.Tneu_0759"/>
    <dbReference type="GeneID" id="6164625"/>
    <dbReference type="KEGG" id="tne:Tneu_0759"/>
    <dbReference type="eggNOG" id="arCOG00915">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016922_10_0_2"/>
    <dbReference type="OrthoDB" id="6534at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042802">
        <property type="term" value="F:identical protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004587">
        <property type="term" value="F:ornithine aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.640.10:FF:000013">
        <property type="entry name" value="4-aminobutyrate aminotransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049704">
        <property type="entry name" value="Aminotrans_3_PPA_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050103">
        <property type="entry name" value="Class-III_PLP-dep_AT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004426">
        <property type="entry name" value="PRK05769.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11986">
        <property type="entry name" value="AMINOTRANSFERASE CLASS III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11986:SF58">
        <property type="entry name" value="LEUCINE_METHIONINE RACEMASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="6 9" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00052899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00073894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="446" mass="49044" checksum="18CE724128DCCB4F" modified="2008-05-20" version="1">MPKWHWPIDPDAVPRILVEPPGPRALEVVRRDGEVIMQSFSRWYPLVVARGYGPVVEDVDGNLYIDYNAGIAVANVGHAHPKVVEAIKRQAELFLHYSLTDFYYEVAVKLAERLIAIAPISGRKKVFFTNSGTESIEGVLKIARGYFKGQRPYVIAFLGAFHGRTYGSMSLTASKPVHRRHFSPMVPNVIHAPFPHPVHCPFKAETPEECGEYALAFLEDWIFRRLVDPSEVALVLMEPVQGEGGYVVPPRNFVQGLRKMTYEHGILFAVDEVQTGFGRTGRWFAVEHFGVEPDLIATAKAIAAGLPLGAIIGRAEVMSLPRGAHANTFGGNPVAAAAALASLEVIEEEGLLNHAETLGEELKKLFRDEVGHRHDVRGLGLMIGIELLEGKKPAKYLEDVLLKAFKRGVAVIGAGLSTVRIAPPLVIPRDMAFKAAEIILDVLRGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD44</accession>
    <name>B1YD44_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0768</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350127.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD44"/>
    <dbReference type="STRING" id="444157.Tneu_0768"/>
    <dbReference type="GeneID" id="6164397"/>
    <dbReference type="KEGG" id="tne:Tneu_0768"/>
    <dbReference type="eggNOG" id="arCOG05542">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_975281_0_0_2"/>
    <dbReference type="OrthoDB" id="24911at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="284" mass="31509" checksum="23ABEA12D197B96C" modified="2008-05-20" version="1">MAERVLIRGLEAGSAYLAYLLRESGVEVDLLTANPADPLLDVPPFEPLFTLDFIRDVLAVRLVQEPEGRYDAVVDSCDVFGFDEVRRALAGGEVVYVVGDGWLSASLSLYRSLPVPDVEVDIPVEKTGQFVEVSVKYRPYVGGDYSLCSARDAWGGCLYTPMRALERIYAAVDIYAAIMGMEAPRRRIKLEYAVGKDRFYAAFGCRPEGKASKINLGELQVWMYGEGGRPTYVYMQGRAEDAAWALAMYNLARSADLAFLLDVGLRGRGALNLAYVGHLYREMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD48</accession>
    <name>B1YD48_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0772</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350131.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD48"/>
    <dbReference type="STRING" id="444157.Tneu_0772"/>
    <dbReference type="GeneID" id="6164316"/>
    <dbReference type="KEGG" id="tne:Tneu_0772"/>
    <dbReference type="eggNOG" id="arCOG05544">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1307883_0_0_2"/>
    <dbReference type="OrthoDB" id="28226at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="209" mass="22473" checksum="94E01D5289D448FB" modified="2008-05-20" version="1">MWRLVLEGGEVRRVEEPAVVVPRGHVGIKVKAFLIDDFSLWALRRGRGPFSRWALGVVVSGGEVGRYVVAYVDNAAAQYAASNRFVYVDGGDPSRLEVAPLAYVVEALGRVPRLRRVEVVGGDPRRAAVERLAEVGPSRWRIALQGASVGSGVAVAVSRLVEVVGNAVVRFVDVPSRWALRRAAGLGIRLGIPVVKDVSFGGWGIVVVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD69</accession>
    <name>B1YD69_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MobA-like NTP transferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0793</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350152.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD69"/>
    <dbReference type="STRING" id="444157.Tneu_0793"/>
    <dbReference type="GeneID" id="6164321"/>
    <dbReference type="KEGG" id="tne:Tneu_0793"/>
    <dbReference type="eggNOG" id="arCOG01873">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061980_4_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd04182">
        <property type="entry name" value="GT_2_like_f"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43777">
        <property type="entry name" value="MOLYBDENUM COFACTOR CYTIDYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43777:SF1">
        <property type="entry name" value="MOLYBDENUM COFACTOR CYTIDYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MobA-like NTP transferase" evidence="1">
        <location>
            <begin position="21"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="207" mass="22325" checksum="49ABC807EF8F78D0" modified="2008-05-20" version="1">MELKGDSYRRHLRLEPQRCVAALLAAGSSTRFGGDKLLHIWRGRPLVWWAAESLRRAGLEIYIVVNRREVAEAAGGVDGVVYNPWWRFGLSTSVKSALAALYDRPCILWALGDMPCVRPETHLKIAGGCGAGLAVPTYGGRRGNPVASCRDVYPLAMGLTGDVGLRALINAVSTKYIPVDDPGVLIDVDSPGELESLSSCLEPSPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD92</accession>
    <name>B1YD92_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Exosome complex component Csl4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">csl4</name>
        <name evidence="2" type="ordered locus">Tneu_0817</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Component of the archaeal exosome complex. Forms a trimer of Rrp4 and/or Csl4 subunits. The trimer associates with an hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 heterodimers. Interacts with DnaG.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the CSL4 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350175.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD92"/>
    <dbReference type="STRING" id="444157.Tneu_0817"/>
    <dbReference type="GeneID" id="6164347"/>
    <dbReference type="KEGG" id="tne:Tneu_0817"/>
    <dbReference type="eggNOG" id="arCOG00676">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067135_1_1_2"/>
    <dbReference type="OrthoDB" id="6768at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000178">
        <property type="term" value="C:exosome (RNase complex)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006401">
        <property type="term" value="P:RNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00975">
        <property type="entry name" value="Exosome_Csl4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030850">
        <property type="entry name" value="Exosome_Csl4_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF034126">
        <property type="entry name" value="PRK09521.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110324">
        <property type="entry name" value="Ribosomal L27 protein-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0271">Exosome</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="178" mass="20029" checksum="0B2CECD33149A5D8" modified="2008-05-20" version="1">MKRRLVTPGEEVAYAEEYEAKWGAYSVDYKLHAYVLGMAAYDERSHVATVKPLRDPPMPQQGSVVYCQVTGKGRRAYQLRCFAVERDREIRDLKYLYTGVLPYFFSDGDLGVGDYIRARVVSTYGPPLVVSIRGPTYGSVLSRCPKCGSVLKRRGPALYCPVCSTEVRRKIAVGHYMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDB4</accession>
    <name>B1YDB4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0840</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350197.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDB4"/>
    <dbReference type="STRING" id="444157.Tneu_0840"/>
    <dbReference type="GeneID" id="6164392"/>
    <dbReference type="KEGG" id="tne:Tneu_0840"/>
    <dbReference type="eggNOG" id="arCOG05688">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1811520_0_0_2"/>
    <dbReference type="OrthoDB" id="27224at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="142" mass="15803" checksum="FA99176E324ECE22" modified="2008-05-20" version="1">MKRISLRITHASYGDEELLSDFLVSLGGVYNVYKDGDVLTIEAEDSTPEAEVVRRVLDLGYEVVLPHFVFKAAPNLDEREVARRLLQSGLAVAAEYYPRTGRGVLIAAPNATREDVERLLRGAVGRAEVESEYVYPVRMSFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDC9</accession>
    <name>B1YDC9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-directed RNA polymerase, M/15 kDa subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDC9"/>
    <dbReference type="STRING" id="444157.Tneu_0855"/>
    <dbReference type="KEGG" id="tne:Tneu_0855"/>
    <dbReference type="eggNOG" id="arCOG00580">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_166550_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001529">
        <property type="entry name" value="Zn_ribbon_RPB9"/>
    </dbReference>
    <dbReference type="SMART" id="SM00661">
        <property type="entry name" value="RPOL9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <feature type="domain" description="DNA-directed RNA polymerase II subunit RPB9-like zinc ribbon" evidence="2">
        <location>
            <begin position="4"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="58"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="91" mass="10656" checksum="DBD792ACC6CF83A1" modified="2008-05-20" version="1">MGMRFCPRDGTLLVPQKKDGATVLKCPKCGYEVKLSEKAKEAYRQRSEVADEKKRGVMVAEEKKMEYDQEEMEELRRQLLENLQESEREAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDD6</accession>
    <name>B1YDD6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Glycosyl transferase family 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0862</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350219.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDD6"/>
    <dbReference type="STRING" id="444157.Tneu_0862"/>
    <dbReference type="GeneID" id="6164424"/>
    <dbReference type="KEGG" id="tne:Tneu_0862"/>
    <dbReference type="eggNOG" id="arCOG03199">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023982_4_1_2"/>
    <dbReference type="OrthoDB" id="34534at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016780">
        <property type="term" value="F:phosphotransferase activity, for other substituted phosphate groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044038">
        <property type="term" value="P:cell wall macromolecule biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000715">
        <property type="entry name" value="Glycosyl_transferase_4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22926">
        <property type="entry name" value="PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22926:SF3">
        <property type="entry name" value="UNDECAPRENYL-PHOSPHATE ALPHA-N-ACETYLGLUCOSAMINYL 1-PHOSPHATE TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00953">
        <property type="entry name" value="Glycos_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="69"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="94"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="117"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="152"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="177"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="206"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="228"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="295"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="321" mass="33346" checksum="7D81931768DC7C68" modified="2008-05-20" version="1">MLAEAAPALVAFTAGVLFGRWWIPFQRGRGITSRDIYKGVDGVPRAGGLIAMVAAAAGYAVAAAQTREAALLLVAAAVVGLLGLLDDLRGVSEYVRVLVPVLLALVVARALEGGLRFTIPLIGLFYGATGWLAALAIPVVTNAFNMLDPVNGFLPAANMAIGAALAAVALVRGQADAAYLLAVHVAASAALYIYNRYPARAFNGNVGSYFLGANISTIAVLYDLVAYLILAATPFVVNGALIVFSSGGIKGREKIQRPTSLSNGVVKQDCSSPILSLVRLVVADRPMGEYEIFKALVYLVLFTSAATAALAAALKALQMPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="34" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDG6</accession>
    <name>B1YDG6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0892</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDG6"/>
    <dbReference type="STRING" id="444157.Tneu_0892"/>
    <dbReference type="KEGG" id="tne:Tneu_0892"/>
    <dbReference type="HOGENOM" id="CLU_2461897_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="88" mass="9428" checksum="D3532E60F7CA6D32" modified="2008-05-20" version="1">MFRAATAAAVHANAVVKATRRRETHVGGVGLATVARCLPESHAAVDAARVVRPRANRLQPTSPRRDVYGIHAPYVGHGVDVRQARRGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDK7</accession>
    <name>B1YDK7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Transcriptional regulator, TrmB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0933</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350290.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDK7"/>
    <dbReference type="STRING" id="444157.Tneu_0933"/>
    <dbReference type="GeneID" id="6164549"/>
    <dbReference type="KEGG" id="tne:Tneu_0933"/>
    <dbReference type="eggNOG" id="arCOG00374">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098527_0_0_2"/>
    <dbReference type="OrthoDB" id="29230at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12840">
        <property type="entry name" value="HTH_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="192"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="138"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="141"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="173"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="290" mass="30082" checksum="62977A93E9BAE9C4" modified="2008-05-20" version="1">MLVILNLTAPPVLILLLPAAMFGNYTLPAPPASDVAAFSPSGAVLPTWVVGGNLYILQGGDPAVAIYVPRFENSSGVYKVSLGGGDVVIQAPPGVMIQDINPLPRQTKLNKTGLYLYLTGPATVTYYFFKVEIKPPPTQPPATTQTAPKATAPPTATPTATPTATPATTSAPQPTPTATPTPPSGAGAQTQWLVGAAVAAVAAVAVAAYLLARRRGGGGGDCGDLHETDVAILRELEKRGGSADRGELQEALGLPKTTLHRHLHKLSKYGFVRLVQVGGSQRVELVRGCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="36" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDL4</accession>
    <name>B1YDL4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0940</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350297.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDL4"/>
    <dbReference type="GeneID" id="6164377"/>
    <dbReference type="KEGG" id="tne:Tneu_0940"/>
    <dbReference type="eggNOG" id="arCOG09174">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1444722_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="187" mass="21547" checksum="CE5E9DEE946F2ADA" modified="2008-05-20" version="1">MILVKTATYVFAALVALFKNESGSHYLVFIDPEGLDIHFSTIQTIVEATGGQCDLLILFNTSSINRTIGGEREDSLTKFFGGEEWRGRNAEELLDLYKEKLKRLYSDIRDAKPYVESIEIDDPDIGWRYDMILLTREGDYTDVWKDLKDRIEKHRPQDVEIAKKTLDGLQTRLDNWAGPLLHYLDTT</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDP0</accession>
    <name>HEM3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Probable porphobilinogen deaminase</fullName>
            <shortName evidence="1">PBG</shortName>
            <ecNumber evidence="1">2.5.1.61</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Hydroxymethylbilane synthase</fullName>
            <shortName evidence="1">HMBS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Pre-uroporphyrinogen synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hemC</name>
        <name type="ordered locus">Tneu_0968</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>4 porphobilinogen + H2O = hydroxymethylbilane + 4 NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:13185"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57845"/>
            <dbReference type="ChEBI" id="CHEBI:58126"/>
            <dbReference type="EC" id="2.5.1.61"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>dipyrromethane</name>
            <dbReference type="ChEBI" id="CHEBI:60342"/>
        </cofactor>
        <text evidence="1">Binds 1 dipyrromethane group covalently.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 2/4.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="1">The porphobilinogen subunits are added to the dipyrromethane group.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the HMBS family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.61" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350323.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDP0"/>
    <dbReference type="SMR" id="B1YDP0"/>
    <dbReference type="STRING" id="444157.Tneu_0968"/>
    <dbReference type="GeneID" id="6164556"/>
    <dbReference type="KEGG" id="tne:Tneu_0968"/>
    <dbReference type="eggNOG" id="arCOG04299">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019704_1_0_2"/>
    <dbReference type="OrthoDB" id="8042at2157"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00319"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004418">
        <property type="term" value="F:hydroxymethylbilane synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.190.10:FF:000005">
        <property type="entry name" value="Porphobilinogen deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.40">
        <property type="entry name" value="Porphobilinogen deaminase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00260">
        <property type="entry name" value="Porphobil_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000860">
        <property type="entry name" value="HemC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022419">
        <property type="entry name" value="Porphobilin_deaminase_cofac_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022417">
        <property type="entry name" value="Porphobilin_deaminase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022418">
        <property type="entry name" value="Porphobilinogen_deaminase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036803">
        <property type="entry name" value="Porphobilinogen_deaminase_C_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00212">
        <property type="entry name" value="hemC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11557">
        <property type="entry name" value="PORPHOBILINOGEN DEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11557:SF0">
        <property type="entry name" value="PORPHOBILINOGEN DEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01379">
        <property type="entry name" value="Porphobil_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03900">
        <property type="entry name" value="Porphobil_deamC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001438">
        <property type="entry name" value="4pyrrol_synth_OHMeBilane_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00151">
        <property type="entry name" value="PORPHBDMNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54782">
        <property type="entry name" value="Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00533">
        <property type="entry name" value="PORPHOBILINOGEN_DEAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000114182" description="Probable porphobilinogen deaminase">
        <location>
            <begin position="1"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="modified residue" description="S-(dipyrrolylmethanemethyl)cysteine" evidence="1">
        <location>
            <position position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00260"/>
        </source>
    </evidence>
    <sequence length="296" mass="31418" checksum="7CA76DE113C0D341" modified="2008-05-20" version="1">MKIRVATRGSKLSLIQTEELLAQIKAVEPDIRFEIVVVKTTGDLIQDKPLFQIGVKGVFEKEVNLAVLRGEADMAVHSLKDLPSDLTPGLALAGYSRRAPPNDALVSPRGYTLETLPRGAVVGTSSVRRAEFLKAARPDLEIKPLRGNVDTRVAKILSGQYDAAVMAAAGLQRLYGGAPPIPAVPLAVEDLPPPPGQGIVAAVAREEDTWLTDLLRRASDRKAAAEAAAERAFLAEVGAGCHVAVGGIARQTPAGIEFTAGYAQGGRKHLVKVYGEDPTEVGRRAARLVAQAMKKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDY7</accession>
    <name>B1YDY7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1069</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350419.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDY7"/>
    <dbReference type="STRING" id="444157.Tneu_1069"/>
    <dbReference type="GeneID" id="6164592"/>
    <dbReference type="KEGG" id="tne:Tneu_1069"/>
    <dbReference type="eggNOG" id="arCOG04037">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_104923_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="230" mass="26003" checksum="EA8B3A4B530854AB" modified="2008-05-20" version="1">MENLLSRFREAWKGLIPPLTDNQRAILEYCLSRYPSSCSPYEVYKNTPLQVSSVYKGFRWLVGNRLVLPLSVKYIANVKAAIALLFHGNTLALPYVAKIWGLSAPPLSILAWLIILGASLSKLGFDLRSAYICSPHGAAAYISEHIRGGFRSLSDTLGIEKEILVKSYEAHLEIMKPYMFRRGNVEIFIRVRNGNVDIIAARCPRWRTCSHEFPDECPETRKIVYASAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE02</accession>
    <name>B1YE02_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1084</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350434.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE02"/>
    <dbReference type="STRING" id="444157.Tneu_1084"/>
    <dbReference type="GeneID" id="6165072"/>
    <dbReference type="KEGG" id="tne:Tneu_1084"/>
    <dbReference type="eggNOG" id="arCOG00333">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023081_6_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="entry name" value="Alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43551">
        <property type="entry name" value="FUMARATE REDUCTASE IRON-SULFUR SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43551:SF1">
        <property type="entry name" value="HETERODISULFIDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46548">
        <property type="entry name" value="alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="3"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="50"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="392" mass="42761" checksum="94181667F2B96594" modified="2008-05-20" version="1">MELPPYVSSAVSACMRCGNCVDVCPSYVATGDLRNSPMGRLQLLKGASWDELTRSFHLCTMCKRCAYFCPTGIDVAEVTRQIRDVLSKSGRPPPYVSKVVENMLRRGNNVGLTPGAVAAAVRAAAKAIEKERGEAPRVFLYDGAAYRDPSGAEAAPGRAAALLFPSSSDVFEFDVALRGYIYLLNKLGFDVVVSLRLAEVANYGYYLSTEAMYKIAGMYLEEIGRVRPQVVVLGECGHGWHVFSRIVAPRSPRPALHILQLLYRAHERGRLRLKPVEVPRPVVYMDPCNYSRGAAPLVREPRALLKAAVGEYVELWKNPGESVCCLGGGGLIAPDALDLAVHYWRRAYGGVEFGTAVRPCATCKAQLRRVFAALGIKAEVTGVVELVYKSAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8K5</accession>
    <name>B1Y8K5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CRISPR-associated protein, MJ1666 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1154</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350503.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8K5"/>
    <dbReference type="GeneID" id="6166013"/>
    <dbReference type="KEGG" id="tne:Tneu_1154"/>
    <dbReference type="eggNOG" id="arCOG03433">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_558550_0_0_2"/>
    <dbReference type="OrthoDB" id="102285at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10640">
        <property type="entry name" value="SSO1389-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013383">
        <property type="entry name" value="CRISPR-assoc_prot_DxTHG_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052875">
        <property type="entry name" value="CRISPR_assoc_ribonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010171">
        <property type="entry name" value="CRISPR_Csx1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053857">
        <property type="entry name" value="Csx1_CARF"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01897">
        <property type="entry name" value="cas_MJ1666"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02549">
        <property type="entry name" value="CRISPR_DxTHG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37169:SF1">
        <property type="entry name" value="CRISPR SYSTEM ENDORIBONUCLEASE CSX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37169">
        <property type="entry name" value="CRISPR SYSTEM ENDORIBONUCLEASE CSX1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22230">
        <property type="entry name" value="Csx1_CARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160980">
        <property type="entry name" value="SSO1389-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRISPR system endoribonuclease Csx1 CARF" evidence="3">
        <location>
            <begin position="5"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="265"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="393"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="270"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF22230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="473" mass="52931" checksum="0ABD4A511DCDBCB5" modified="2008-05-20" version="1">MAKVLLVGVWGFPPSWRRARYTAEVDRKPFKGSAGRFEGCTSEGALVDVLRGLGRPSEVSVLVVGSDSVVNPGAAAGDLRARARELYQRWGRELMGGLPFEVVSVPAVGTYFGWRFEGSPEAIFMDVFKAVWERSEDASFIVVDITHGINFVTISALYAAVAAAVGRGKEDRLILVNSEPYPNDVESDFCIQPQRGERRREVPELRVLDVSSLQEVLRSVRELAALRSLRAVGRTRETRLGKLIWLISNGAAALGFTGAAFEGWDPDFGPPKEEKPPQLTESRPRVENGAVRYEHADLQTAAETVLHQIWTELKRDVFDKRTLPEYLSALANRYEKHGHIYLSSIARVTSKEVGLLQKVAEATSPGEVGPELWHLVSRHKREVREALKSGGIKKLIDHRIEEARRELQQERERLEKDIERYVRNFLAHAGLSPTAIKRFKVEGGRIVGIVYDGPTVKRLVEHMAKRASRRSPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8L3</accession>
    <name>B1Y8L3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1163</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350511.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8L3"/>
    <dbReference type="GeneID" id="6165453"/>
    <dbReference type="KEGG" id="tne:Tneu_1163"/>
    <dbReference type="eggNOG" id="arCOG01290">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015525_2_2_2"/>
    <dbReference type="OrthoDB" id="15538at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040086">
        <property type="entry name" value="MJ0683-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43432:SF6">
        <property type="entry name" value="RADICAL SAM CORE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43432">
        <property type="entry name" value="SLR0285 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01084">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="4">
        <location>
            <begin position="25"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF04055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="269" mass="30227" checksum="36E86BFF071DB961" modified="2008-05-20" version="1">MKIYEIRVRRALTPSGLPEYHYALNPYVGCLHGCLYCYAQDYTRGPPGAAWGQILYVKANLLEVLRREAAQLKPGVVGLSTVTDPYQPPEAKYRLARGSIEILAEAGFHISVQTKSPLVLRDLDLLRRYRESVDVGITITAMGDKALELEPAAPHPTARARAAARLAEEGVKVWIYLGPVVPGYNDSRQDIAEVVKLAASIGAELIYDRYRPKPRAHARLPPAYRQEAGRQWWTQVKKTIEELCREAGARCLDVEEEWRARRDLPQKPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8L5</accession>
    <name>B1Y8L5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1165</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350513.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8L5"/>
    <dbReference type="STRING" id="444157.Tneu_1165"/>
    <dbReference type="GeneID" id="6165094"/>
    <dbReference type="KEGG" id="tne:Tneu_1165"/>
    <dbReference type="eggNOG" id="arCOG01617">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023205_2_3_2"/>
    <dbReference type="OrthoDB" id="28487at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="entry name" value="NADP-dependent oxidoreductase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053135">
        <property type="entry name" value="AKR2_Oxidoreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NAD(P)_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43312">
        <property type="entry name" value="D-THREO-ALDOSE 1-DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43312:SF1">
        <property type="entry name" value="NADP-DEPENDENT OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="NAD(P)-linked oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADP-dependent oxidoreductase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="298" mass="32974" checksum="F0E85780C73C7328" modified="2008-05-20" version="1">MRYREFCGRRVSEIGFGGWVVGSDLYPLDDDAARALVKKAVDLGINFFDTADVYGRGRSEELLGRWLAGYDVVISTKVGYDFYSGGKPERRFDPPYLEMAAARSAERLGRRPNLLMIHNPTTRQVREAAPWLRSRRGAVADCVGAALGPETDVLEQGLAALEEGLDAIMYVFNILERHPGAELTARGRGRGLLVRVPDATGVLTDRFNPAPEGHRTLRPREWLLKARAVVEREVAPLARELGLTLGQYAVKYLLSHPITTVFVTATTPDELEEYAAASDGKPLPPDHLERLASIHLPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="103" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8L7</accession>
    <name>B1Y8L7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Putative [LysW]-aminoadipate semialdehyde/glutamate semialdehyde transaminase</fullName>
            <ecNumber evidence="7">2.6.1.118</ecNumber>
            <ecNumber evidence="7">2.6.1.124</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">lysJ</name>
        <name evidence="9" type="ordered locus">Tneu_1167</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in both the arginine and lysine biosynthetic pathways.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[amino-group carrier protein]-C-terminal-gamma-(L-lysyl)-L-glutamate + 2-oxoglutarate = [amino-group carrier protein]-C-terminal-N-(1-carboxy-5-oxopentan-1-yl)-L-glutamine + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:41952"/>
            <dbReference type="Rhea" id="RHEA-COMP:9714"/>
            <dbReference type="Rhea" id="RHEA-COMP:9715"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:78501"/>
            <dbReference type="ChEBI" id="CHEBI:78526"/>
            <dbReference type="EC" id="2.6.1.118"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[amino-group carrier protein]-C-terminal-gamma-(L-ornithyl)-L-glutamate + 2-oxoglutarate = [amino-group carrier protein]-C-terminal-gamma-(L-glutamyl-5-semialdehyde)-L-glutamate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:52672"/>
            <dbReference type="Rhea" id="RHEA-COMP:13327"/>
            <dbReference type="Rhea" id="RHEA-COMP:13328"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:136761"/>
            <dbReference type="ChEBI" id="CHEBI:136763"/>
            <dbReference type="EC" id="2.6.1.124"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
        <text evidence="7">Binds 1 pyridoxal phosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-lysine biosynthesis via AAA pathway; L-lysine from L-alpha-aminoadipate (Thermus route): step 4/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. LysJ subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.118" evidence="7"/>
    <dbReference type="EC" id="2.6.1.124" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350515.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8L7"/>
    <dbReference type="STRING" id="444157.Tneu_1167"/>
    <dbReference type="GeneID" id="6165336"/>
    <dbReference type="KEGG" id="tne:Tneu_1167"/>
    <dbReference type="eggNOG" id="arCOG00914">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016922_10_0_2"/>
    <dbReference type="OrthoDB" id="6534at2157"/>
    <dbReference type="UniPathway" id="UPA00033">
        <property type="reaction ID" value="UER00038"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042802">
        <property type="term" value="F:identical protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:L-arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019878">
        <property type="term" value="P:lysine biosynthetic process via aminoadipic acid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.640.10:FF:000004">
        <property type="entry name" value="Acetylornithine aminotransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02084">
        <property type="entry name" value="LysJ_aminotrans_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049704">
        <property type="entry name" value="Aminotrans_3_PPA_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050103">
        <property type="entry name" value="Class-III_PLP-dep_AT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037537">
        <property type="entry name" value="LysJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11986:SF79">
        <property type="entry name" value="ACETYLORNITHINE AMINOTRANSFERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11986">
        <property type="entry name" value="AMINOTRANSFERASE CLASS III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 7 9" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="7" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="1 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="5 7 8" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="97"/>
            <end position="98"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="209"/>
            <end position="212"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="266"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="267"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7">
        <location>
            <position position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="381" mass="42126" checksum="CAF51C3C9347FD36" modified="2008-05-20" version="1">MARIARYYREYGLRIVRGLLQYVWDDGGRRYLDCNTNHGVAFLGHANPKIAEAVRRQLEEVWAVPLNFYTPARERFIEEFSRLLPAKFGVVFLQNTGTEAVETAVKIAKKITRRPAIVAFTNSFHGRTMGSLSITWNERYRKAFEPLYPHVRFGKFNVPTEVDKLVQEDTCCVVVEPIQGEGGVNPATPEFLKALREETQRKGALLIIDEVQTGFGRTGAVWAFQKYGVEPDIFTAGKPVAGGLPIGLAVAREDFGDVFEPGEHGSTFAGNAVVMAAAAAASRLLREEDVPDKAERAGAELAKALGEVESRLAVRVKGMGLMLGLELRVKADQFLQPLLERGVLGLTAGVNTLRFLPPYMITREDIELVHAAVSEALKRAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Q8</accession>
    <name>B1Y8Q8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1210</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350556.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Q8"/>
    <dbReference type="STRING" id="444157.Tneu_1210"/>
    <dbReference type="GeneID" id="6166263"/>
    <dbReference type="KEGG" id="tne:Tneu_1210"/>
    <dbReference type="eggNOG" id="arCOG05619">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2299446_0_0_2"/>
    <dbReference type="OrthoDB" id="29133at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="99" mass="10342" checksum="D4AAD72CA43941C1" modified="2008-05-20" version="1">MVDDVIHLAAVNALAIAALAAFIAQHAPSTPAVCQAAKIALENPGSEIHVYGRVNIAYDGEAVLLSCGLTLPRSRILYINKTEGLLKIGSTADGRLYIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8S3</accession>
    <name>B1Y8S3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1225</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350571.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8S3"/>
    <dbReference type="STRING" id="444157.Tneu_1225"/>
    <dbReference type="GeneID" id="6166161"/>
    <dbReference type="KEGG" id="tne:Tneu_1225"/>
    <dbReference type="eggNOG" id="arCOG05606">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1387630_0_0_2"/>
    <dbReference type="OrthoDB" id="28725at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="197" mass="22263" checksum="BEACA9C66BF14CB7" modified="2008-05-20" version="1">MTTLTEVKSWLGEGWEMRWGPPPRGVSLLKEFHMADPAEVEPLCRRGEAVVVYIVASVEDLNVIYGRVKPRVTSCPTATFIRRFRWGEAAEAVKTLVEFALKVDKVPLFQINPEVVRYAGLCGEYPLLCEEPDVVVEALRRRLGRRGNPQVVQPRGGGWALDELVKVLREKIELDAAFAEVVKKVAEDPERLRMCYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8U0</accession>
    <name>B1Y8U0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1242</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350588.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8U0"/>
    <dbReference type="STRING" id="444157.Tneu_1242"/>
    <dbReference type="GeneID" id="6166004"/>
    <dbReference type="KEGG" id="tne:Tneu_1242"/>
    <dbReference type="eggNOG" id="arCOG00498">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061754_0_0_2"/>
    <dbReference type="OrthoDB" id="197151at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050855">
        <property type="entry name" value="NDM-1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42951">
        <property type="entry name" value="METALLO-BETA-LACTAMASE DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42951:SF14">
        <property type="entry name" value="METALLO-BETA-LACTAMASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallo-beta-lactamase" evidence="1">
        <location>
            <begin position="12"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="266" mass="28889" checksum="E2DB7D202F3C1F4A" modified="2008-05-20" version="1">MELRKGIKLLRGSPNTLIAGVYVVDPGQPETRALEIVSQVGGPPTVLLTHFHADHLSAVPDGSTVYAPWGEELFVASVKARLFLTHGVYVDKAVYKGRDLKVDGVVKAGDRVGPFEVVHLPGHTFGHVGYYADGLLYAGDAIFGEKVLEKYGVPYLMDYSAFLNTLDRILSLEPELLVVGHGPVVGSKKKISELVETNRKAVERAYKLVEAALPGDVLTLAKNLLKRLGVEAGWENLLLTATTVRAVLSHLSAEGRAQPDEFGVWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="43" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8U1</accession>
    <name>B1Y8U1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1243</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350589.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8U1"/>
    <dbReference type="STRING" id="444157.Tneu_1243"/>
    <dbReference type="GeneID" id="58787340"/>
    <dbReference type="KEGG" id="tne:Tneu_1243"/>
    <dbReference type="eggNOG" id="arCOG11745">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3178726_0_0_2"/>
    <dbReference type="OrthoDB" id="25763at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="47" mass="5255" checksum="C35D5E8007810A54" modified="2008-05-20" version="1">MWTKLKNFITSLCLILAPYVDACKFGAPPERSGAGEVRRERCTKLSP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Z1</accession>
    <name>DCD_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">dCTP deaminase</fullName>
            <ecNumber evidence="1">3.5.4.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Deoxycytidine triphosphate deaminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">dcd</name>
        <name type="ordered locus">Tneu_1293</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the deamination of dCTP to dUTP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>dCTP + H2O + H(+) = dUTP + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:22680"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:61481"/>
            <dbReference type="ChEBI" id="CHEBI:61555"/>
            <dbReference type="EC" id="3.5.4.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; dUMP biosynthesis; dUMP from dCTP (dUTP route): step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the dCTP deaminase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.13" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350639.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Z1"/>
    <dbReference type="SMR" id="B1Y8Z1"/>
    <dbReference type="STRING" id="444157.Tneu_1293"/>
    <dbReference type="GeneID" id="6165662"/>
    <dbReference type="KEGG" id="tne:Tneu_1293"/>
    <dbReference type="eggNOG" id="arCOG04048">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_087476_3_0_2"/>
    <dbReference type="OrthoDB" id="33242at2157"/>
    <dbReference type="UniPathway" id="UPA00610">
        <property type="reaction ID" value="UER00665"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008829">
        <property type="term" value="F:dCTP deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006226">
        <property type="term" value="P:dUMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006229">
        <property type="term" value="P:dUTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07557">
        <property type="entry name" value="trimeric_dUTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00146">
        <property type="entry name" value="dCTP_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011962">
        <property type="entry name" value="dCTP_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036157">
        <property type="entry name" value="dUTPase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033704">
        <property type="entry name" value="dUTPase_trimeric"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02274">
        <property type="entry name" value="dCTP_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42680">
        <property type="entry name" value="DCTP DEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42680:SF3">
        <property type="entry name" value="DCTP DEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22769">
        <property type="entry name" value="DCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51283">
        <property type="entry name" value="dUTPase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0546">Nucleotide metabolism</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000117990" description="dCTP deaminase">
        <location>
            <begin position="1"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="1">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="99"/>
            <end position="104"/>
        </location>
        <ligand>
            <name>dCTP</name>
            <dbReference type="ChEBI" id="CHEBI:61481"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>dCTP</name>
            <dbReference type="ChEBI" id="CHEBI:61481"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>dCTP</name>
            <dbReference type="ChEBI" id="CHEBI:61481"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00146"/>
        </source>
    </evidence>
    <sequence length="176" mass="19390" checksum="43B45294C1B3BC53" modified="2008-05-20" version="1">MILANDELKRLISLGRLKVEPLAPDTVRENGLDLRIGGEYAIYAYEGAVVKPCELDSARPLFRVVKADEVVIPPRNFVLLTTEEYVKMPDDVVGLANLRSTLARYGLVIPPTVVDAGFEGNITIEVVNESPNTIVLRRGMRFLHLILVKAEGRALYSGTYQGQRGVTPPKGLRGEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y916</accession>
    <name>B1Y916_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1318</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350664.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y916"/>
    <dbReference type="GeneID" id="6165349"/>
    <dbReference type="KEGG" id="tne:Tneu_1318"/>
    <dbReference type="eggNOG" id="arCOG05556">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2091389_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="116" mass="12846" checksum="2FAA2760AD6BFCCC" modified="2008-05-20" version="1">MKLYLALAVLTTAYILALTLGATQEPRSLLWNGIVGFMLSTSLVLSVVPVAGPLLYETASQILYSSLNPPLHLTHLLWLLRLASWAINLAFTSALVLYVLQIKRAKARRIIRALLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y922</accession>
    <name>B1Y922_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1325</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350670.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y922"/>
    <dbReference type="STRING" id="444157.Tneu_1325"/>
    <dbReference type="GeneID" id="6165295"/>
    <dbReference type="KEGG" id="tne:Tneu_1325"/>
    <dbReference type="eggNOG" id="arCOG02841">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_84_3_2"/>
    <dbReference type="OrthoDB" id="26192at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034040">
        <property type="term" value="F:ATPase-coupled lipid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03228">
        <property type="entry name" value="ABCC_MRP_Like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="entry name" value="ABC transporter type 1, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221:SF654">
        <property type="entry name" value="ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="ABC transporter transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="56"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="31"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="323"/>
            <end position="521"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="521" mass="57387" checksum="147A2DF58753DF7C" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y941</accession>
    <name>B1Y941_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">AAA+ ATPase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1344</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the HerA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350689.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y941"/>
    <dbReference type="STRING" id="444157.Tneu_1344"/>
    <dbReference type="GeneID" id="6165344"/>
    <dbReference type="KEGG" id="tne:Tneu_1344"/>
    <dbReference type="eggNOG" id="arCOG00282">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_560955_0_0_2"/>
    <dbReference type="OrthoDB" id="107033at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008571">
        <property type="entry name" value="HerA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002789">
        <property type="entry name" value="HerA_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42957:SF2">
        <property type="entry name" value="HELICASE HERA CENTRAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42957">
        <property type="entry name" value="HELICASE MJ1565-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01935">
        <property type="entry name" value="DUF87"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="5">
        <location>
            <begin position="148"/>
            <end position="407"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00048954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00048988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="451" mass="50019" checksum="8FED55294F3BC2B7" modified="2008-05-20" version="1">MRELGIVVSGATVGAIPVQIYRNAERYAVEEQLVGVVDRENPGEVVVGFLRRITKLEPVIRDRVRTPYVDKPEMVDYGILLPYTSAIVKPYIAVRDGRVGEVTNVVTPGSKVYLLDASLLEGALKGDYIYVGAHKYSGWALPLDVRYITHHVGVFGATGVGKSRLVRALVNELAARGYRVVVFDHTGVDYAPHYSAVVKSTEVKIPPNILASVIARVAQLQWQTHGEYLEIATMTYEGRWSKDAFIAHVKRVMKRLGARDSTIEKVELYLKHLVDSAFFEELNNRVKSPDDILSIGSTPVVVDLSYDTDLSVKQAIVASVIEAAWARVKRGKASANTVFVIDEAQNYAPQTWTISKDAIETTVREGRKWGLSVVLASQRIVGDIDPSIRANLGTVFFSRLTAPTDVREISTYLDLADINESVLAQLQPREFFVAGLMNPLRKPILIKTREV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y971</accession>
    <name>B1Y971_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoesterase RecJ domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1374</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350719.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y971"/>
    <dbReference type="STRING" id="444157.Tneu_1374"/>
    <dbReference type="GeneID" id="6164588"/>
    <dbReference type="KEGG" id="tne:Tneu_1374"/>
    <dbReference type="eggNOG" id="arCOG01565">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070736_0_0_2"/>
    <dbReference type="OrthoDB" id="350705at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.310.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1640.10">
        <property type="entry name" value="inorganic pyrophosphatase (n-terminal core)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001667">
        <property type="entry name" value="DDH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038763">
        <property type="entry name" value="DHH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051319">
        <property type="entry name" value="Oligoribo/pAp-PDE_c-di-AMP_PDE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47618">
        <property type="entry name" value="BIFUNCTIONAL OLIGORIBONUCLEASE AND PAP PHOSPHATASE NRNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47618:SF1">
        <property type="entry name" value="BIFUNCTIONAL OLIGORIBONUCLEASE AND PAP PHOSPHATASE NRNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01368">
        <property type="entry name" value="DHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64182">
        <property type="entry name" value="DHH phosphoesterases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDH" evidence="1">
        <location>
            <begin position="14"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="295" mass="30969" checksum="68D3504098EBE81E" modified="2008-05-20" version="1">MLEKLRGLLGSSARVAIVTHRRADADALACAKVLELVLAKLGVAVVAVSCPEGSPLGGCTEALPQDVDMYVLADVASLNQVPPMSKSFIKVDHHAVGDDIPGISLDRPSCTEIALELAEEAGVEIPPDVAKLAILGIYADTGKLKRADARTLRLLASLLEKTGGTLGDAVGEGGESTARQRTFALLKGMQRLEIYETSAGIVCTSYVGAYEADLASLLISVGCDVSLVASRKKDGVHIVMRSRRYDVATLAKSLGAGGGHREAAVAVLHIQAKKGQLPAILRDVVKKIDRNARMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y980</accession>
    <name>B1Y980_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Shwachman-Bodian-Diamond syndrome protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1383</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SDO1/SBDS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350728.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y980"/>
    <dbReference type="STRING" id="444157.Tneu_1383"/>
    <dbReference type="GeneID" id="6165290"/>
    <dbReference type="KEGG" id="tne:Tneu_1383"/>
    <dbReference type="eggNOG" id="arCOG04187">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043216_2_0_2"/>
    <dbReference type="OrthoDB" id="84504at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042256">
        <property type="term" value="P:cytosolic ribosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1250.10">
        <property type="entry name" value="Ribosome maturation protein SBDS, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.900">
        <property type="entry name" value="SBDS protein C-terminal domain, subdomain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036786">
        <property type="entry name" value="Ribosome_mat_SBDS_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002140">
        <property type="entry name" value="Sdo1/SBDS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039100">
        <property type="entry name" value="Sdo1/SBDS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046928">
        <property type="entry name" value="SDO1/SBDS_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018978">
        <property type="entry name" value="SDO1/SBDS_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037188">
        <property type="entry name" value="Sdo1/SBDS_central_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019783">
        <property type="entry name" value="SDO1/SBDS_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00291">
        <property type="entry name" value="RNA_SBDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10927">
        <property type="entry name" value="RIBOSOME MATURATION PROTEIN SBDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10927:SF4">
        <property type="entry name" value="RIBOSOME MATURATION PROTEIN SDO1 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20268">
        <property type="entry name" value="SBDS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09377">
        <property type="entry name" value="SBDS_domain_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01172">
        <property type="entry name" value="SBDS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="EF-G C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89895">
        <property type="entry name" value="FYSH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109728">
        <property type="entry name" value="Hypothetical protein AF0491, middle domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ribosome maturation protein SDO1/SBDS N-terminal" evidence="2">
        <location>
            <begin position="5"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosome maturation protein SDO1/SBDS central" evidence="3">
        <location>
            <begin position="99"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosome maturation protein SDO1/SBDS C-terminal" evidence="4">
        <location>
            <begin position="163"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF09377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF20268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="232" mass="26115" checksum="5FA18DB4195CE4B3" modified="2008-05-20" version="1">MTKKVAVAKLDRGGDHFEILIDPDAALELKLGKPLGIDKVLIHEEIYKDAKKGLRASEQSLKKAFGTTDVRKIAEIIIKEGEIPLTSEQRRKLVEDKKRQIVEWISRNCIDVRTKTPVPPQRVENAIEQARVSIDPFKSVEEQVQEVLKEIQRIIPIKVATARVSLSVSSSHAQRVKGLVAKMAKIVSERYRPDGSWEAVLEMPAGIQDMLISRVNDITHGDADIRILEIVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y991</accession>
    <name>B1Y991_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1395</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350739.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y991"/>
    <dbReference type="STRING" id="444157.Tneu_1395"/>
    <dbReference type="GeneID" id="6165031"/>
    <dbReference type="KEGG" id="tne:Tneu_1395"/>
    <dbReference type="eggNOG" id="arCOG05573">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097419_0_0_2"/>
    <dbReference type="OrthoDB" id="29081at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12840">
        <property type="entry name" value="HTH_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="107"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="152"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="244"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="265" mass="28439" checksum="5DE27B321E23C9DD" modified="2008-05-20" version="1">MERVLYGVAAGRRRDIVLLLHREGPLTLAKLRAALGISASTLLFELSALESLGVVKREDSMVYLTELGERAASIIATAEPLKTLSFLSVVGLRPLVVWLLLSPYLHIAAYTLVIGWAAALAIGAFQSPPLALLGVAYVGYNLPISIGLSKTVSLAVSLLSIAALFLATYLLSKGRLAPPKTAVGLAPIALYPSLHLTLVHLAHMWELTHLITLSQVLLFIALLFTATIYAAVYSLEVGSTYEGVLVRTLLVFFVAPALLYLAPIR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9C5</accession>
    <name>RPO12_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA-directed RNA polymerase subunit Rpo12</fullName>
            <ecNumber evidence="1">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">DNA-directed RNA polymerase subunit P</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpo12</name>
        <name evidence="1" type="synonym">rpoP</name>
        <name type="ordered locus">Tneu_1429</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the RNA polymerase complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the archaeal Rpo12/eukaryotic RPC10 RNA polymerase subunit family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350773.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9C5"/>
    <dbReference type="SMR" id="B1Y9C5"/>
    <dbReference type="STRING" id="444157.Tneu_1429"/>
    <dbReference type="GeneID" id="6164342"/>
    <dbReference type="KEGG" id="tne:Tneu_1429"/>
    <dbReference type="eggNOG" id="arCOG04341">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_179456_2_0_2"/>
    <dbReference type="OrthoDB" id="129238at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.30">
        <property type="entry name" value="RNA polymerase ii, chain L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00615">
        <property type="entry name" value="RNApol_arch_Rpo12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006591">
        <property type="entry name" value="RNAP_P/RPABC4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029040">
        <property type="entry name" value="RPABC4/Spt4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023464">
        <property type="entry name" value="Rpo12"/>
    </dbReference>
    <dbReference type="SMART" id="SM00659">
        <property type="entry name" value="RPOLCX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63393">
        <property type="entry name" value="RNA polymerase subunits"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0804">Transcription</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000130408" description="DNA-directed RNA polymerase subunit Rpo12">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00615"/>
        </source>
    </evidence>
    <sequence length="52" mass="6122" checksum="71B8B642851F1C1D" modified="2008-05-20" version="1">MAEERKLYMCMRCGRVFSKPEMEILPGIRCPYCNFKIIMKVRSPTVKRIPAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9E7</accession>
    <name>B1Y9E7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1451</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350795.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9E7"/>
    <dbReference type="STRING" id="444157.Tneu_1451"/>
    <dbReference type="GeneID" id="6165962"/>
    <dbReference type="KEGG" id="tne:Tneu_1451"/>
    <dbReference type="eggNOG" id="arCOG07044">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_194246_0_0_2"/>
    <dbReference type="OrthoDB" id="27373at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="60" mass="6619" checksum="850F778123820AAD" modified="2008-05-20" version="1">MEAIYEILARLGGEADLDTIVEEALKIGIPPPVATRLLMRLVEKGRARVICAPSIRYRAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9E8</accession>
    <name>B1Y9E8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Haloacid dehalogenase domain protein hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1452</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350796.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9E8"/>
    <dbReference type="STRING" id="444157.Tneu_1452"/>
    <dbReference type="GeneID" id="6166084"/>
    <dbReference type="KEGG" id="tne:Tneu_1452"/>
    <dbReference type="eggNOG" id="arCOG02294">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1346457_0_0_2"/>
    <dbReference type="OrthoDB" id="27736at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008967">
        <property type="term" value="F:phosphoglycolate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050155">
        <property type="entry name" value="HAD-like_hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43434">
        <property type="entry name" value="PHOSPHOGLYCOLATE PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43434:SF1">
        <property type="entry name" value="PHOSPHOGLYCOLATE PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00702">
        <property type="entry name" value="Hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="203" mass="23057" checksum="F36FFB79B8DD3618" modified="2008-05-20" version="1">MIFILSFWGLLAERVDFWEVWRNVLGRRDLVEEVSWFVEEVNAAGYEVPLQAVARLFAKRAGGDPRELAGRFVEEVSARLAPRPCAVDFLRWLRGRWRFAVLSNTPCRCFPRLFLERWGVEADLVATSDVLLRRKPSKAVFRYVLGRLGVEPHEAVYVGDGEEDLGAMGLGLFTIMVGSRGGHLDFPTLCEAWSWVRANLAKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9G4</accession>
    <name>B1Y9G4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Threonyl/alanyl tRNA synthetase SAD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1468</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350812.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9G4"/>
    <dbReference type="STRING" id="444157.Tneu_1468"/>
    <dbReference type="GeneID" id="6166267"/>
    <dbReference type="KEGG" id="tne:Tneu_1468"/>
    <dbReference type="eggNOG" id="arCOG01254">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004485_3_2_2"/>
    <dbReference type="OrthoDB" id="11392at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004813">
        <property type="term" value="F:alanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006419">
        <property type="term" value="P:alanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.980.10">
        <property type="entry name" value="Threonyl-trna Synthetase, Chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018165">
        <property type="entry name" value="Ala-tRNA-synth_IIc_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018164">
        <property type="entry name" value="Ala-tRNA-synth_IIc_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053424">
        <property type="entry name" value="Alanyl-tRNA_Edit-Domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051335">
        <property type="entry name" value="Alanyl-tRNA_Editing_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018163">
        <property type="entry name" value="Thr/Ala-tRNA-synth_IIc_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012947">
        <property type="entry name" value="tRNA_SAD"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040865">
        <property type="entry name" value="a_tRNA_ed_AlaXM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43462">
        <property type="entry name" value="ALANYL-TRNA EDITING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43462:SF1">
        <property type="entry name" value="ALANYL-TRNA EDITING PROTEIN AARSD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01411">
        <property type="entry name" value="tRNA-synt_2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07973">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00863">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55186">
        <property type="entry name" value="ThrRS/AlaRS common domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50860">
        <property type="entry name" value="AA_TRNA_LIGASE_II_ALA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Alanyl-transfer RNA synthetases family profile" evidence="6">
        <location>
            <begin position="1"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="238" mass="26629" checksum="23CFC8E875896387" modified="2008-05-20" version="1">MKTRLLYQEDSYLREFNATVLELSGNEVVLDQTAFHDGTGGVQADTGVLYYGGESYAATAVHKGGEVVHVLDRSPSFKPGEAVRGVVDWDKRYRKMRLHTAAHILSAVLYRRHNALITGGDITPEYARDDFNVEGDMATVKRIFEEAVAEANEIARRGIEVKVYWLPREEALKIPGVVKLAEKMPPEVPRLRIVEIPGVDIQADGGPHVRNTSEIGTIKILKVENRGRGKKRIYYTVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9G6</accession>
    <name>B1Y9G6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1470</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350814.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9G6"/>
    <dbReference type="GeneID" id="6165779"/>
    <dbReference type="KEGG" id="tne:Tneu_1470"/>
    <dbReference type="eggNOG" id="arCOG07439">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1998829_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="124" mass="13921" checksum="3FD01230687EC4AE" modified="2008-05-20" version="1">MVHRAVDIVEVLRRKNPEEVRKALVEVHRAKAFSLADAEYVAEELEKAARLHAYHIALMSLIAPEVEVDPDSVTGLDYRLARSFQEGLAKCAELPGVVEDGFYRVVLEELNRIIRSACSPQHGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="95" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9K4</accession>
    <name>B1Y9K4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Malate dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_1509</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the LDH/MDH superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350852.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9K4"/>
    <dbReference type="STRING" id="444157.Tneu_1509"/>
    <dbReference type="GeneID" id="6165777"/>
    <dbReference type="KEGG" id="tne:Tneu_1509"/>
    <dbReference type="eggNOG" id="arCOG00246">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045401_2_1_2"/>
    <dbReference type="OrthoDB" id="2596at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004459">
        <property type="term" value="F:L-lactate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006089">
        <property type="term" value="P:lactate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01339">
        <property type="entry name" value="LDH-like_MDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000018">
        <property type="entry name" value="Malate dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.110.10">
        <property type="entry name" value="Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001557">
        <property type="entry name" value="L-lactate/malate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022383">
        <property type="entry name" value="Lactate/malate_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001236">
        <property type="entry name" value="Lactate/malate_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015955">
        <property type="entry name" value="Lactate_DH/Glyco_Ohase_4_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011275">
        <property type="entry name" value="Malate_DH_type3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004863">
        <property type="entry name" value="PRK06223.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43128">
        <property type="entry name" value="L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43128:SF16">
        <property type="entry name" value="L-LACTATE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02866">
        <property type="entry name" value="Ldh_1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00056">
        <property type="entry name" value="Ldh_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000102">
        <property type="entry name" value="Lac_mal_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00086">
        <property type="entry name" value="LLDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56327">
        <property type="entry name" value="LDH C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0520">NAD</keyword>
    <keyword evidence="4 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Lactate/malate dehydrogenase N-terminal" evidence="10">
        <location>
            <begin position="2"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="Lactate/malate dehydrogenase C-terminal" evidence="11">
        <location>
            <begin position="145"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="173"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="6"/>
            <end position="11"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="149"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000102-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000102-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000102-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB40433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="308" mass="33153" checksum="13543348926E5C1C" modified="2008-05-20" version="1">MITIIGSGRVGSSAAAIIGIMKLDNKILLVDIVKGLPQGEALDLNHMSSILGLDVEYMGSNDYRDMEGSDLVIVTAGLARKPGMTREQLLEANAKIVSEIGREIRKYAKDSVVILTTNPLDAMTYVMWKATGFPRERVIGFSGVLDAGRLAYYAAKKLGVSPSSILPIVLGQHGESMFPVPSKSFIHGVPLTRLLTEEQIREVTEETVKAGAKITELRGFSSNWAPGAGLAVMAEAVKRDTRRSLIASVVLQGEYGVRDIPVEVPIVLGRSGVVKVLEVELTPGELQSFMQSVEAVKKLVSSIPPNLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9K9</accession>
    <name>B1Y9K9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Large ribosomal subunit protein uL6</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpl6</name>
        <name evidence="7" type="ordered locus">Tneu_1514</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the universal ribosomal protein uL6 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350857.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9K9"/>
    <dbReference type="STRING" id="444157.Tneu_1514"/>
    <dbReference type="GeneID" id="6165704"/>
    <dbReference type="KEGG" id="tne:Tneu_1514"/>
    <dbReference type="eggNOG" id="arCOG04090">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065464_0_0_2"/>
    <dbReference type="OrthoDB" id="7144at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002181">
        <property type="term" value="P:cytoplasmic translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.930.12:FF:000008">
        <property type="entry name" value="50S ribosomal protein L6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.930.12">
        <property type="entry name" value="Ribosomal protein L6, alpha-beta domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01365_A">
        <property type="entry name" value="Ribosomal_uL6_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000702">
        <property type="entry name" value="Ribosomal_uL6-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036789">
        <property type="entry name" value="Ribosomal_uL6-like_a/b-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020040">
        <property type="entry name" value="Ribosomal_uL6_a/b-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019907">
        <property type="entry name" value="Ribosomal_uL6_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004037">
        <property type="entry name" value="PRK05518.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03653">
        <property type="entry name" value="uL6_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11655:SF16">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11655">
        <property type="entry name" value="60S/50S RIBOSOMAL PROTEIN L6/L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00347">
        <property type="entry name" value="Ribosomal_L6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002162">
        <property type="entry name" value="Ribosomal_L6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56053">
        <property type="entry name" value="Ribosomal protein L6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="2 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 5" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Large ribosomal subunit protein uL6 alpha-beta" evidence="6">
        <location>
            <begin position="12"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="Large ribosomal subunit protein uL6 alpha-beta" evidence="6">
        <location>
            <begin position="101"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="196" mass="21784" checksum="CC877C6DAB05308D" modified="2008-05-20" version="1">MQVVYAVEEVEIPENVKVSVEKVGPFDYVVKVKGPLGEIAKEFRNTPVAMEVRDGKVVLEVYNARKREYSILGTYKGVLRNMFLGVTKGWRYKLKVIYTHFPMLVKVQGSQLVIENFLGRKSKIVVAIPKGVKVEVKGKEDIVIEGIDRDVVSQLAAAIQSATELRGDERPSPHGREGGLGVVDGIYVVGYEHVKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9M6</accession>
    <name>B1Y9M6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1531</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350874.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9M6"/>
    <dbReference type="STRING" id="444157.Tneu_1531"/>
    <dbReference type="GeneID" id="6165400"/>
    <dbReference type="KEGG" id="tne:Tneu_1531"/>
    <dbReference type="eggNOG" id="arCOG00500">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031317_3_2_2"/>
    <dbReference type="OrthoDB" id="73420at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042781">
        <property type="term" value="F:3'-tRNA processing endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46018">
        <property type="entry name" value="ZINC PHOSPHODIESTERASE ELAC PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46018:SF2">
        <property type="entry name" value="ZINC PHOSPHODIESTERASE ELAC PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallo-beta-lactamase" evidence="1">
        <location>
            <begin position="18"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="235" mass="25241" checksum="DC59860B8DA19BA2" modified="2008-05-20" version="1">MEIYVLGYGGWTSPPHMGHTSIYVKTDVGILVDAGECTYARLTQCGLPWPDAIVISHRHGDHILGLPTFMLLAKRLGRRLTVVANREAAEAARTLAVATGIENALAYIDFVEASGEVVVGSTKLKFAKTAHTVETTAVRVEHGGRCVVYSSDTAPTAGVVELARGCDLLIHETSGNPGQEEEAHRVGHSTTADAVNIAREAGVRYLMPVHYYLEPPRIPPAIDIIVPIPCGKVQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9P2</accession>
    <name>B1Y9P2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0006</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349386.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9P2"/>
    <dbReference type="STRING" id="444157.Tneu_0006"/>
    <dbReference type="GeneID" id="6164741"/>
    <dbReference type="KEGG" id="tne:Tneu_0006"/>
    <dbReference type="eggNOG" id="arCOG05452">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_165870_0_0_2"/>
    <dbReference type="OrthoDB" id="27319at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB38964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="105" mass="12125" checksum="F60B8D2F2A9D17EE" modified="2008-05-20" version="1">MRFEIVERKLVEALIILLINAKGRVVSIKATSLAKLAGLGTDHSAILRAARLLQKLSRHNFLSTAPDIKRNKTYRYVLKEDDELWQLARRDPERAKELLVKILHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9P9</accession>
    <name>B1Y9P9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">H+-transporting ATP synthase subunit C</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0013</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the V-ATPase V0D/AC39 subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349393.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9P9"/>
    <dbReference type="STRING" id="444157.Tneu_0013"/>
    <dbReference type="GeneID" id="6164873"/>
    <dbReference type="KEGG" id="tne:Tneu_0013"/>
    <dbReference type="eggNOG" id="arCOG02459">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_810426_0_0_2"/>
    <dbReference type="OrthoDB" id="4272at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.132.50">
        <property type="entry name" value="ATP synthase (C/AC39) subunit, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1690.10">
        <property type="entry name" value="V-type ATP synthase subunit C domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036079">
        <property type="entry name" value="ATPase_csu/dsu_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002843">
        <property type="entry name" value="ATPase_V0-cplx_csu/dsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050873">
        <property type="entry name" value="V-ATPase_V0D/AC39_subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035067">
        <property type="entry name" value="V-type_ATPase_csu/dsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044911">
        <property type="entry name" value="V-type_ATPase_csu/dsu_dom_3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38682">
        <property type="entry name" value="V-TYPE ATP SYNTHASE SUBUNIT C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38682:SF1">
        <property type="entry name" value="V-TYPE ATP SYNTHASE SUBUNIT C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01992">
        <property type="entry name" value="vATP-synt_AC39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103486">
        <property type="entry name" value="V-type ATP synthase subunit C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB38971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="351" mass="39464" checksum="40ADC7D3D83914DA" modified="2008-05-20" version="1">MKFAVSGAASAILRRPQLGPRVRGLRIRELPRDKLISLIYANSLEEFLNTLKTTPYAVTLDRLSRDNLGELRRELVKLYLDRVRSIYLSAGGDAKAVVLSSLKYFEYENIRNLAIAIKAGRNPEEYILWEPLEFTKRRHIIANLLGAKNVEEVGERLKAARHMAYKAFELATKYGEDKLSIFLDRQWIEDFSTTAPTGRDRSLATFVADIREYFNVLVAIRARIWGLAEELDELAVGAPTPLVTSAVKDPPAKFLENAGGTPWGKVLLDMVAEAPTLENISIAMDNIYPAYVKKLSDIYTARYSEFSLGALAAHLEYMRAEVMTLVRAAALLAEGVPTEKRRKVFEPLART</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Q6</accession>
    <name>B1Y9Q6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FAD/NAD(P)-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0020</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349400.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Q6"/>
    <dbReference type="GeneID" id="6166309"/>
    <dbReference type="KEGG" id="tne:Tneu_0020"/>
    <dbReference type="eggNOG" id="arCOG01300">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_580908_0_0_2"/>
    <dbReference type="OrthoDB" id="36306at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00368">
        <property type="entry name" value="FADPNR"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00411">
        <property type="entry name" value="PNDRDTASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD/NAD(P)-binding" evidence="1">
        <location>
            <begin position="22"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="470" mass="51586" checksum="E96161A532688886" modified="2008-05-20" version="1">MGCRSATTCSPEASREGDLEVDVLVVGGGLGGLAAALELKRYGYSPKVVYVGRLGGHHVLGNAPRYSEDVDVQSIVGRSRELDLVEGFFDGVYVYSGGVRYRARYRHLVLATGGVDVPIAFPGGGGAPQKTAEEVMEAPPSGLKIAVWGTTEWGLRTAITLRRAGNDVVVLDNSAYLRDVKYFEKVKASADFPIATAVNIREYTRGVVKYLAMTEKRKAEVREERVDLLVSAVRMVNPYVPAKLGFRVYYSFELNSLVPRRTNTGELLILDAAGKAVGGSNVYATGHLYGALRESHVVEQARLLAAYIATKDGLESPDRVKDGLDRFLAKLAVEANWLFNLGGRLERGTDGTGRYVEPNVIDVPHWASYWPQKEEVEEDLVVCPCDGTPLGKILEEVKRENRLREVKVTITHEETDLLRQLKVPRLHFGESVCAESVCIPYAAILLGALLAQKPSYFLYGKPAMLYAEMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9S9</accession>
    <name>B1Y9S9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Signal transduction protein with CBS domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1555</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350898.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9S9"/>
    <dbReference type="STRING" id="444157.Tneu_1555"/>
    <dbReference type="GeneID" id="6166289"/>
    <dbReference type="KEGG" id="tne:Tneu_1555"/>
    <dbReference type="eggNOG" id="arCOG00610">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_926289_0_0_2"/>
    <dbReference type="OrthoDB" id="64432at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02205">
        <property type="entry name" value="CBS_pair_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="entry name" value="CBS-domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051257">
        <property type="entry name" value="Diverse_CBS-Domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016436">
        <property type="entry name" value="UCP005063_CBS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005104">
        <property type="entry name" value="WHTH_HrcA_DNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080:SF2">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03444">
        <property type="entry name" value="WHD_HrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005063">
        <property type="entry name" value="UCP005063_CBS_MJ1232"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="CBS-domain pair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="166"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="229"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="286" mass="31168" checksum="AFE1A533C5D934F4" modified="2008-05-20" version="1">MASLSDSVYNVLKALVELYNKENSPVKSRDIANALGIHEGYVRNMLSILKSMGLVISKAGPHGGYIPTSKATDVLSRQTFSVPIASLGNVVGYALDITLIGLLSDKPFASMRVVGDLAGYVDREVRVGPLPSGLVLIGRVIKADIESLMEISSIISIPRTSVKNIMTPNPVAAKPDDSIEPYVKLFIEKRYRGIPVVNEERKPIGLLMASKLMEALYGCRKDVKVKDLMVGEPPVIHEEEDIHEAIRIMVSGGIGRLLVVNSEDKLVGIVTRTDILRRIATLEQLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9W4</accession>
    <name>B1Y9W4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Mut7-C RNAse domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1591</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350933.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9W4"/>
    <dbReference type="STRING" id="444157.Tneu_1591"/>
    <dbReference type="GeneID" id="6165949"/>
    <dbReference type="KEGG" id="tne:Tneu_1591"/>
    <dbReference type="eggNOG" id="arCOG04290">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112469_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002782">
        <property type="entry name" value="Mut7-C_RNAse_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39081">
        <property type="entry name" value="MUT7-C DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39081:SF1">
        <property type="entry name" value="MUT7-C RNASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01927">
        <property type="entry name" value="Mut7-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mut7-C RNAse" evidence="1">
        <location>
            <begin position="16"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="162" mass="18166" checksum="891DFEF5F7BB0776" modified="2008-05-20" version="1">MVDCVIKGRPDVGCIYVDSMLGWLARMLRILFGARAIYSPDLDDSELAEADCLVVTRDEELFKTRRGPTLLIKTDDHVKWVSIFLKLGLRPLEKSVCPHCGGELVEVDCTEAEKAVGHPIASAACWRCTSCGRYYWVGSHWRRLRQLLDEAAEAQVTCLHTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA02</accession>
    <name>B1YA02_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1629</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA02"/>
    <dbReference type="KEGG" id="tne:Tneu_1629"/>
    <dbReference type="eggNOG" id="arCOG04200">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_198006_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="64" mass="7360" checksum="5863F2CB880947C8" modified="2008-05-20" version="1">MGAKCLPMSRKQKLKFYDIKAKQAFETDQYETVEKQTARGPMIFAVAKSPYTGIKVYRLIGKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA07</accession>
    <name>B1YA07_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-grasp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1634</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350976.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA07"/>
    <dbReference type="STRING" id="444157.Tneu_1634"/>
    <dbReference type="GeneID" id="6165084"/>
    <dbReference type="KEGG" id="tne:Tneu_1634"/>
    <dbReference type="eggNOG" id="arCOG01338">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063044_1_1_2"/>
    <dbReference type="OrthoDB" id="18103at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1490.20:FF:000020">
        <property type="entry name" value="Protein lysine acetyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="entry name" value="ATP-grasp fold, A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051538">
        <property type="entry name" value="Acyl-CoA_Synth/Transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43334:SF1">
        <property type="entry name" value="3-HYDROXYPROPIONATE--COA LIGASE [ADP-FORMING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43334">
        <property type="entry name" value="ACETATE--COA LIGASE [ADP-FORMING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13549">
        <property type="entry name" value="ATP-grasp_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="5">
        <location>
            <begin position="23"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="229" mass="25182" checksum="7F2B8B169336A917" modified="2008-05-20" version="1">MTHPIVARALAEARNKLREDEALSLLKAYGIPVPDFAAVKGEEEAVEAAEQIGYPVAVKIISPQIIHKTDVGGVVLGVADAQGVREACRKLGEVLKRVPYAELEGILIQKMVPRGVELIAGALYDEIFGHVILFGLGGIYTELYRDVAMRLVPLTEQDAWEVVREVRAYRLLTGFRGLPPRDTAAVVDILTKFSRLLVDNPEIREADLNPIIALEEGRGAYVVDARFML</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA11</accession>
    <name>B1YA11_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FeoB-type G domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1638</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350980.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA11"/>
    <dbReference type="GeneID" id="6165647"/>
    <dbReference type="KEGG" id="tne:Tneu_1638"/>
    <dbReference type="eggNOG" id="arCOG00364">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144586_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00882">
        <property type="entry name" value="Ras_like_GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030389">
        <property type="entry name" value="G_FEOB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02421">
        <property type="entry name" value="FeoB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeoB-type G" evidence="1">
        <location>
            <begin position="2"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="152" mass="17049" checksum="FFD2DFE625C485B9" modified="2008-05-20" version="1">MLLGVGGVGKTTLAYRLMGLSIRPTVTLRPGVYRLYVANKEINLIDVPGQYVVEVVQNFAKMWTFYVDKAVYMYDVLHYDTLRSLVEIHSGLLDRGIKPFKRLAVVGNKMDLAREYGFQVEADEIAAAVGANEIYYISALKDDAKDLLKVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA22</accession>
    <name>B1YA22_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative snRNP Sm-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0038</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the snRNP Sm proteins family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349418.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA22"/>
    <dbReference type="STRING" id="444157.Tneu_0038"/>
    <dbReference type="GeneID" id="6166085"/>
    <dbReference type="KEGG" id="tne:Tneu_0038"/>
    <dbReference type="eggNOG" id="arCOG00998">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076902_11_1_2"/>
    <dbReference type="OrthoDB" id="371816at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01731">
        <property type="entry name" value="archaeal_Sm1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044641">
        <property type="entry name" value="Lsm7/SmG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047575">
        <property type="entry name" value="Sm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001163">
        <property type="entry name" value="Sm_dom_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022901">
        <property type="entry name" value="snRNP_Sm-like_arc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10553">
        <property type="entry name" value="SMALL NUCLEAR RIBONUCLEOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10553:SF5">
        <property type="entry name" value="U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01423">
        <property type="entry name" value="LSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00651">
        <property type="entry name" value="Sm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="Sm-like ribonucleoproteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52002">
        <property type="entry name" value="SM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0687">Ribonucleoprotein</keyword>
    <feature type="domain" description="Sm" evidence="4">
        <location>
            <begin position="11"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS52002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB38996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="80" mass="8837" checksum="45EB2E240EF87C32" modified="2008-05-20" version="1">MASDISKCFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLDDAEEIIDGNVYKRGTIVVRGENVLFISPVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA39</accession>
    <name>B1YA39_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Probable GTP 3',8-cyclase</fullName>
            <ecNumber evidence="10">4.1.99.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Molybdenum cofactor biosynthesis protein A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">moaA</name>
        <name evidence="12" type="ordered locus">Tneu_0055</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>GTP + AH2 + S-adenosyl-L-methionine = (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate + 5'-deoxyadenosine + L-methionine + A + H(+)</text>
            <dbReference type="Rhea" id="RHEA:49576"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:131766"/>
            <dbReference type="EC" id="4.1.99.22"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="10">Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine and 1 [4Fe-4S] cluster coordinated with 3 cysteines and the GTP-derived substrate.</text>
    </comment>
    <comment type="pathway">
        <text evidence="10">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the radical SAM superfamily. MoaA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.1.99.22" evidence="10"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349434.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA39"/>
    <dbReference type="STRING" id="444157.Tneu_0055"/>
    <dbReference type="GeneID" id="6164323"/>
    <dbReference type="KEGG" id="tne:Tneu_0055"/>
    <dbReference type="eggNOG" id="arCOG00930">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009273_0_1_2"/>
    <dbReference type="OrthoDB" id="6925at2157"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061799">
        <property type="term" value="F:cyclic pyranopterin monophosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061798">
        <property type="term" value="F:GTP 3',8'-cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904047">
        <property type="term" value="F:S-adenosyl-L-methionine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd21117">
        <property type="entry name" value="Twitch_MoaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01225_A">
        <property type="entry name" value="MoaA_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040064">
        <property type="entry name" value="MoaA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013485">
        <property type="entry name" value="MoaA_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010505">
        <property type="entry name" value="MoaA_twitch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050105">
        <property type="entry name" value="MoCo_biosynth_MoaA/MoaC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001199">
        <property type="entry name" value="PRK00164.2-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22960:SF0">
        <property type="entry name" value="MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22960">
        <property type="entry name" value="MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06463">
        <property type="entry name" value="Mob_synth_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01383">
        <property type="entry name" value="cyclic_pyranopterin_phosphate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01386">
        <property type="entry name" value="main_SPASM_domain-containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01067">
        <property type="entry name" value="SPASM/twitch_domain_containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 10" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7 10" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5 10" id="KW-0408">Iron</keyword>
    <keyword evidence="6 10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="3 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 10" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="4 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 10" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="11">
        <location>
            <begin position="5"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="25"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="251"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="254"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="325" mass="35545" checksum="D224577FE0185AA6" modified="2008-05-20" version="1">MLFDRYGRPFLKLRYILNDECNYSCIFCHFEGQARRRGVYLTAEDYGFATSVFRKVGVSDFKITGGEPLLRRDIDAVVYNIAKTGGAVTLTTNGLLLERWAAKLAAAGLQRVNVSVHSTDPGMYSKVTGAPPAALKAVLRGLREARSLGISLKINVVVLRGVNTDRDSVKELVKLAASLDASLQFIELMPTGEGAHVFEQYYEPVETVAKAVAELGGRPLKLRKELHNRPIYVLAGVAIELIKNYGNASFCSGCTTMRLTSDGKLKTCIYAEPSVDLMPLIKARDEEGLLYAVKTALAQREPRFKLYLARPAEPGVPSGGVHSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA76</accession>
    <name>B1YA76_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0092</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349471.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA76"/>
    <dbReference type="STRING" id="444157.Tneu_0092"/>
    <dbReference type="GeneID" id="6164501"/>
    <dbReference type="KEGG" id="tne:Tneu_0092"/>
    <dbReference type="eggNOG" id="arCOG02067">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121282_0_0_2"/>
    <dbReference type="OrthoDB" id="25864at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1260.10">
        <property type="entry name" value="DsrEFH-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027396">
        <property type="entry name" value="DsrEFH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003787">
        <property type="entry name" value="Sulphur_relay_DsrE/F-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34655:SF3">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34655">
        <property type="entry name" value="CONSERVED WITHIN P. AEROPHILUM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02635">
        <property type="entry name" value="DsrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75169">
        <property type="entry name" value="DsrEFH-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="129" mass="14299" checksum="12DFDF2888AD2418" modified="2008-05-20" version="1">MPKAVIMLSDNDLARAYHALVVALSARSLGYEVHLFATGLGAYLFSRRPKTRLLGLTPLASLYIRWRLRRLGARRLEDLARECLSTGVKVYVDEPVVKMLGIEPLEGVEVAGSLTFLALAREADLILTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAA3</accession>
    <name>B1YAA3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0119</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349498.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAA3"/>
    <dbReference type="STRING" id="444157.Tneu_0119"/>
    <dbReference type="GeneID" id="6164628"/>
    <dbReference type="KEGG" id="tne:Tneu_0119"/>
    <dbReference type="eggNOG" id="arCOG04583">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1451465_0_0_2"/>
    <dbReference type="OrthoDB" id="18536at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase type 11" evidence="1">
        <location>
            <begin position="39"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="184" mass="20196" checksum="19A36AFD74F6E0F4" modified="2008-05-20" version="1">MEWARRAREAYLAIGREYGATRARPLPVADFAAVGPKALDVGSGTGAQPRYLEHEHPYVVHCDLDRGLSPGGDFVECEATMLPFRGGAFDAAYLVAVVHHMPPEAARRVLEEAKRAARLVVATTWAPARGREVAPGVYEVPWGGRATRIYYRYELGDLIAMAPAAPLSAGVARRGRRTNYYILF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAC4</accession>
    <name>B1YAC4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uridine phosphorylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1651</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350992.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAC4"/>
    <dbReference type="STRING" id="444157.Tneu_1651"/>
    <dbReference type="GeneID" id="6165401"/>
    <dbReference type="KEGG" id="tne:Tneu_1651"/>
    <dbReference type="eggNOG" id="arCOG01324">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068457_0_0_2"/>
    <dbReference type="OrthoDB" id="372263at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004850">
        <property type="term" value="F:uridine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009116">
        <property type="term" value="P:nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009166">
        <property type="term" value="P:nucleotide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd17767">
        <property type="entry name" value="UP_EcUdp-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="entry name" value="Nucleoside phosphorylase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010058">
        <property type="entry name" value="Uridine_phosphorylase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01718">
        <property type="entry name" value="Uridine-psphlse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43691">
        <property type="entry name" value="URIDINE PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43691:SF13">
        <property type="entry name" value="URIDINE PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="Purine and uridine phosphorylases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nucleoside phosphorylase" evidence="1">
        <location>
            <begin position="23"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="258" mass="27568" checksum="5FFF9DB7CB0AC9EC" modified="2008-05-20" version="1">MAQRPRVGARAYHLLLAPGDVPRYVLLPGDPGRVPLIARHWEGAREVARNREFVTWVGAYRGVAVGATSTGIGSGSTAIAVEELLYAGADTFIRVGTTGALRREVKLGDLVIGAAAVRYDGASRWYAPPEYPAVAHWLVVKALVDAAASLGVRYHVGIVASTDSFYVGQERPGHGGFLPPWSRGLIDTLRSLRVLSFEMESATIYTLSSIYGARAGGVYAAIANRETDEFAPEVGVEDAVRVANEAVRILAEYDSKGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAD2</accession>
    <name>B1YAD2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Signal recognition particle-docking protein FtsY</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1659</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GTP-binding SRP family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351000.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAD2"/>
    <dbReference type="STRING" id="444157.Tneu_1659"/>
    <dbReference type="GeneID" id="6166327"/>
    <dbReference type="KEGG" id="tne:Tneu_1659"/>
    <dbReference type="eggNOG" id="arCOG01227">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009301_3_4_2"/>
    <dbReference type="OrthoDB" id="372188at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005047">
        <property type="term" value="F:signal recognition particle binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006614">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.140">
        <property type="entry name" value="Signal recognition particle SRP54, nucleotide-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013822">
        <property type="entry name" value="Signal_recog_particl_SRP54_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004390">
        <property type="entry name" value="SR_rcpt_FtsY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036225">
        <property type="entry name" value="SRP/SRP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000897">
        <property type="entry name" value="SRP54_GTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042101">
        <property type="entry name" value="SRP54_N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00064">
        <property type="entry name" value="ftsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43134">
        <property type="entry name" value="SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43134:SF1">
        <property type="entry name" value="SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00448">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02881">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00962">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00963">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47364">
        <property type="entry name" value="Domain of the SRP/SRP receptor G-proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00300">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SRP54-type proteins GTP-binding" evidence="10">
        <location>
            <begin position="278"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS00300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="305" mass="34183" checksum="41DAE0FFE19932A4" modified="2008-05-20" version="1">MFDKLRKTLSKFVESVVSAVKEDQLDGKEVEKLVSDLYLDLVDSDVAVEVADAVVEELRRRLVGTKVPRFGDRESVVRKAVHDALLGVLGDVPDVDFYEEARRALERSRPYVVMFLGPNGYGKTTTLAKLAFNLQEMGFRVVAAAADTFRAGAREQLEEHGRRVGFRVVGGPYGSDPAAVAYDAVQHARSRGYHFVLIDTAGRMHTDANLMEELRKIQRVAEPHLSIFVFDAQLGNEALEIARYYSKYVRIDGMIATKVDAYPKGGSILTFMYVLKRPVYFLGVGQTYRDLVKFSKSEYVGRLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAE4</accession>
    <name>B1YAE4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger SWIM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1671</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351012.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAE4"/>
    <dbReference type="STRING" id="444157.Tneu_1671"/>
    <dbReference type="GeneID" id="6165299"/>
    <dbReference type="KEGG" id="tne:Tneu_1671"/>
    <dbReference type="eggNOG" id="arCOG05658">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1943941_0_0_2"/>
    <dbReference type="OrthoDB" id="25498at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04434">
        <property type="entry name" value="SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SWIM-type" evidence="2">
        <location>
            <begin position="68"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="128" mass="14474" checksum="4F713C74C5CD8C1A" modified="2008-05-20" version="1">MQPPIDERVRSFLLSLSRALGTRIENVLDLYLYVSPETVRIVEIVERGGKIAGLRLAVRSRKKPDVWYYVAVGEYGAKCTCEGNTIGGKICRHIIIGVITWNMISLIKRGEDIDPTKLTWLSQGEREI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="38" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAH6</accession>
    <name>B1YAH6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1705</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAH6"/>
    <dbReference type="STRING" id="444157.Tneu_1705"/>
    <dbReference type="KEGG" id="tne:Tneu_1705"/>
    <dbReference type="HOGENOM" id="CLU_1269974_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="136"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="160"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="170"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="186"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="217" mass="24977" checksum="1B62EA87E32336AD" modified="2008-05-20" version="1">MKRAEKGLNSSARHAAGPRKMAPAGDTPPRRPPQPRPTNPGQRARPRQTPPQGGHIPIGRGFYVFRFDGRRWALASSEDGGCVYYGDGMRLRRFQCALFRDLNDAFFSSRRSQEFGDSRYDSYWVGRRLFEKLPAPQTRQRHAGGTHGEEKRLNVTLHPLRNKRRHHKHNEKDRLERELLKRRRGASAAPMSSPPSRTRPKEPQADVPRTYPRLGQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAI8</accession>
    <name>B1YAI8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Isochorismatase hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1717</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351056.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAI8"/>
    <dbReference type="STRING" id="444157.Tneu_1717"/>
    <dbReference type="GeneID" id="6165614"/>
    <dbReference type="KEGG" id="tne:Tneu_1717"/>
    <dbReference type="eggNOG" id="arCOG01943">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068979_8_4_2"/>
    <dbReference type="OrthoDB" id="9194at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00431">
        <property type="entry name" value="cysteine_hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.850">
        <property type="entry name" value="Isochorismatase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000868">
        <property type="entry name" value="Isochorismatase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050272">
        <property type="entry name" value="Isochorismatase-like_hydrls"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036380">
        <property type="entry name" value="Isochorismatase-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43540:SF6">
        <property type="entry name" value="ISOCHORISMATASE-LIKE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43540">
        <property type="entry name" value="PEROXYUREIDOACRYLATE/UREIDOACRYLATE AMIDOHYDROLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00857">
        <property type="entry name" value="Isochorismatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52499">
        <property type="entry name" value="Isochorismatase-like hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Isochorismatase-like" evidence="2">
        <location>
            <begin position="24"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="201" mass="22632" checksum="E750463C56B6D94F" modified="2008-05-20" version="1">MLPEVVRVPRVNVVDRVSLPSGKTAVVVVDMQNDFAHPSGRLYAPSSREIIPRIASLLERARRSGVRVIYTKDTHYGDDPVEFPIWGPHVVRGTWGWEIVDELKPREGDVVVEKMRYDAFFGTPLDHILRMYGVQHLVVTGTVANICVLHTVASARLRLYDVVVPVDAVAALNEFDYAAALRQMDYLYRVTLTKTDGVEFV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAJ4</accession>
    <name>GATE_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glutamyl-tRNA(Gln) amidotransferase subunit E</fullName>
            <shortName evidence="1">Glu-ADT subunit E</shortName>
            <ecNumber evidence="1">6.3.5.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">gatE</name>
        <name type="ordered locus">Tneu_1725</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-glutamyl-tRNA(Gln) + L-glutamine + ATP + H2O = L-glutaminyl-tRNA(Gln) + L-glutamate + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17521"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="Rhea" id="RHEA-COMP:9684"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterodimer of GatD and GatE.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GatB/GatE family. GatE subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.-" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351062.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAJ4"/>
    <dbReference type="SMR" id="B1YAJ4"/>
    <dbReference type="STRING" id="444157.Tneu_1725"/>
    <dbReference type="GeneID" id="6165010"/>
    <dbReference type="KEGG" id="tne:Tneu_1725"/>
    <dbReference type="eggNOG" id="arCOG01719">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030702_0_0_2"/>
    <dbReference type="OrthoDB" id="7316at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050567">
        <property type="term" value="F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070681">
        <property type="term" value="P:glutaminyl-tRNAGln biosynthesis via transamidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.30">
        <property type="entry name" value="GAD-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.380">
        <property type="entry name" value="GatB domain, N-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00588">
        <property type="entry name" value="GatE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017959">
        <property type="entry name" value="Asn/Gln-tRNA_amidoTrfase_suB/E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006075">
        <property type="entry name" value="Asn/Gln-tRNA_Trfase_suB/E_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018027">
        <property type="entry name" value="Asn/Gln_amidotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003789">
        <property type="entry name" value="Asn/Gln_tRNA_amidoTrase-B-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004115">
        <property type="entry name" value="GAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029351">
        <property type="entry name" value="GAD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042114">
        <property type="entry name" value="GatB_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004414">
        <property type="entry name" value="GatE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017958">
        <property type="entry name" value="Gln-tRNA_amidoTrfase_suB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00134">
        <property type="entry name" value="gatE_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003107">
        <property type="entry name" value="PRK04028.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11659">
        <property type="entry name" value="GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11659:SF2">
        <property type="entry name" value="GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02938">
        <property type="entry name" value="GAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02934">
        <property type="entry name" value="GatB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02637">
        <property type="entry name" value="GatB_Yqey"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00845">
        <property type="entry name" value="GatB_Yqey"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55261">
        <property type="entry name" value="GAD domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89095">
        <property type="entry name" value="GatB/YqeY motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="Glutamine synthetase/guanido kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01234">
        <property type="entry name" value="GATB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000129790" description="Glutamyl-tRNA(Gln) amidotransferase subunit E">
        <location>
            <begin position="1"/>
            <end position="607"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="399"/>
            <end position="428"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="607" mass="67444" checksum="5E412B8BE29F4B6A" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAJ6</accession>
    <name>FLPA_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">flpA</name>
        <name type="ordered locus">Tneu_1727</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Interacts with nop5. Component of box C/D small ribonucleoprotein (sRNP) particles that contain rpl7ae, FlpA and nop5, plus a guide RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyltransferase superfamily. Fibrillarin family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351064.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAJ6"/>
    <dbReference type="SMR" id="B1YAJ6"/>
    <dbReference type="STRING" id="444157.Tneu_1727"/>
    <dbReference type="GeneID" id="6164796"/>
    <dbReference type="KEGG" id="tne:Tneu_1727"/>
    <dbReference type="eggNOG" id="arCOG00078">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059055_2_0_2"/>
    <dbReference type="OrthoDB" id="6244at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990259">
        <property type="term" value="F:histone H2AQ104 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008649">
        <property type="term" value="F:rRNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000494">
        <property type="term" value="P:box C/D sno(s)RNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000613">
        <property type="entry name" value="Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00351">
        <property type="entry name" value="RNA_methyltransf_FlpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000692">
        <property type="entry name" value="Fibrillarin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020813">
        <property type="entry name" value="Fibrillarin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003275">
        <property type="entry name" value="PRK04266.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003276">
        <property type="entry name" value="PRK04266.1-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003277">
        <property type="entry name" value="PRK04266.1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10335:SF17">
        <property type="entry name" value="FIBRILLARIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10335">
        <property type="entry name" value="RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01269">
        <property type="entry name" value="Fibrillarin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006540">
        <property type="entry name" value="Nop17p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00052">
        <property type="entry name" value="FIBRILLARIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM01206">
        <property type="entry name" value="Fibrillarin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00566">
        <property type="entry name" value="FIBRILLARIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0489">Methyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0698">rRNA processing</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <feature type="chain" id="PRO_1000120518" description="Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase">
        <location>
            <begin position="1"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="91"/>
            <end position="92"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="110"/>
            <end position="111"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="137"/>
            <end position="138"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="157"/>
            <end position="160"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00351"/>
        </source>
    </evidence>
    <sequence length="235" mass="26507" checksum="882D3287E503B263" modified="2008-05-20" version="1">MSIEVVEVRPHERHFGVYALKFEDGSERLATRNLTPGKRVYGERLVKWGGAEYREWNPYRSKLAAAIANGIKFVPIQEGTHILYLGAASGTTPSHMSDIVGERGLIYSVEFSPRVFREFMEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVAYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPATETFKQEINTLKERGFEILETVHLEPYDTAHAMVVARKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAM1</accession>
    <name>B1YAM1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GINS subunit domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0143</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAM1"/>
    <dbReference type="STRING" id="444157.Tneu_0143"/>
    <dbReference type="KEGG" id="tne:Tneu_0143"/>
    <dbReference type="eggNOG" id="arCOG00552">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_116586_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd11714">
        <property type="entry name" value="GINS_A_archaea"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.2050">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021151">
        <property type="entry name" value="GINS_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038437">
        <property type="entry name" value="GINS_Psf3_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05916">
        <property type="entry name" value="Sld5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GINS subunit" evidence="1">
        <location>
            <begin position="62"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="160" mass="17857" checksum="1D5E680195CA343A" modified="2008-05-20" version="1">MVGSYPVRVAFKKDVDLPLLGVSHKAGTEAEVPLYLALKLDEMGAVEIDESGAIQPRDVTSLKYVEQRESYPVKLPEGFYARVKLAAYIFNKRGDVKSLRTLVQEVRELVIERVRKIAVLVATRPDIINDQSFLDRLTAEERALLTSIHASVTSFALSII</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="91" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAM4</accession>
    <name>B1YAM4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Adenylosuccinate synthetase</fullName>
            <shortName evidence="7">AMPSase</shortName>
            <shortName evidence="7">AdSS</shortName>
            <ecNumber evidence="7">6.3.4.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">IMP--aspartate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">purA</name>
        <name evidence="8" type="ordered locus">Tneu_0146</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>IMP + L-aspartate + GTP = N(6)-(1,2-dicarboxyethyl)-AMP + GDP + phosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:15753"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57567"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="6.3.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="7">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the adenylosuccinate synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.4" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349524.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAM4"/>
    <dbReference type="STRING" id="444157.Tneu_0146"/>
    <dbReference type="GeneID" id="6164802"/>
    <dbReference type="KEGG" id="tne:Tneu_0146"/>
    <dbReference type="eggNOG" id="arCOG04387">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029848_0_0_2"/>
    <dbReference type="OrthoDB" id="372247at2157"/>
    <dbReference type="UniPathway" id="UPA00075">
        <property type="reaction ID" value="UER00335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004019">
        <property type="term" value="F:adenylosuccinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044208">
        <property type="term" value="P:'de novo' AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046040">
        <property type="term" value="P:IMP metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.440.10">
        <property type="entry name" value="Adenylosuccinate Synthetase, subunit A, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.170.10">
        <property type="entry name" value="Adenylosuccinate Synthetase, subunit A, domain 3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00011">
        <property type="entry name" value="Adenylosucc_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042109">
        <property type="entry name" value="Adenylosuccinate_synth_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042111">
        <property type="entry name" value="Adenylosuccinate_synth_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001114">
        <property type="entry name" value="Adenylosuccinate_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003295">
        <property type="entry name" value="PRK04293.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11846">
        <property type="entry name" value="ADENYLOSUCCINATE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11846:SF0">
        <property type="entry name" value="ADENYLOSUCCINATE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00709">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00788">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1 7 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 7" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="41"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="7">
        <location>
            <begin position="38"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="40"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="7">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="7">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="7">
        <location>
            <position position="186"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="244"/>
            <end position="250"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="7">
        <location>
            <position position="248"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="250"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="276"/>
            <end position="278"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="316"/>
            <end position="318"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="332" mass="36209" checksum="9426758684A680FB" modified="2008-05-20" version="1">MLYVVVDGFFGDTGKGKVVAYLAQADSPALCVRTGAPNAGHTVVYGGQTAVLRTLPTCFINRRPKLAVAPGALIKLDVFLTEVEKYGGGRTYVDYQTGVIEDRHVEAERRDEYLMKVVGSTGQGVGAAMVDRVLRRLRLAKEFDVLKPYLADVPALIHENRGEGVVIEGTQGTFLSLYHGTYPYVTSRDATASGVLSEAGVGPKAVDEVVLVFKAYVTRVGSGPLPGELPPEEAERRGWAERGAVTGRPRRAAPFNLELARRAVLLNTPTQIAITKIDVLFKEAAGKTRWGDLPPEARRWIEELEEALKVPVTLIGTGPEPHHMVDLRRERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAR9</accession>
    <name>B1YAR9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Translation initiation factor 1A</fullName>
            <shortName evidence="5">aIF-1A</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">eif1a</name>
        <name evidence="8" type="ordered locus">Tneu_0192</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the eIF-1A family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349569.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAR9"/>
    <dbReference type="STRING" id="444157.Tneu_0192"/>
    <dbReference type="GeneID" id="6164768"/>
    <dbReference type="KEGG" id="tne:Tneu_0192"/>
    <dbReference type="eggNOG" id="arCOG01179">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_109098_1_2_2"/>
    <dbReference type="OrthoDB" id="2586at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00216">
        <property type="entry name" value="aIF_1A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006196">
        <property type="entry name" value="RNA-binding_domain_S1_IF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001253">
        <property type="entry name" value="TIF_eIF-1A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018104">
        <property type="entry name" value="TIF_eIF-1A_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003082">
        <property type="entry name" value="PRK04012.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003084">
        <property type="entry name" value="PRK04012.1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21668">
        <property type="entry name" value="EIF-1A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01176">
        <property type="entry name" value="eIF-1a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00652">
        <property type="entry name" value="eIF1a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01262">
        <property type="entry name" value="IF1A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50832">
        <property type="entry name" value="S1_IF1_TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5 6" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="3 5 6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S1-like" evidence="7">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="97" mass="11224" checksum="7AC0907EF855A12D" modified="2008-05-20" version="1">MSEFRTPGEGEVLGKVIEMLGDGRFKVICADGQIRVARLPGRLRRRLWLKAGDYVVVALWDFDKEKGDIVHKYDKRDVEELKRRGFAEAVENLDRYA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAW1</accession>
    <name>GCH3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GTP cyclohydrolase III</fullName>
            <ecNumber evidence="1">3.5.4.29</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">gch3</name>
        <name type="ordered locus">Tneu_1743</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the formation of 2-amino-5-formylamino-6-ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. Also has an independent pyrophosphate phosphohydrolase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>GTP + 3 H2O = 2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one + 2 phosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:22468"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57258"/>
            <dbReference type="EC" id="3.5.4.29"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the archaeal-type GTP cyclohydrolase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.29" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351080.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAW1"/>
    <dbReference type="SMR" id="B1YAW1"/>
    <dbReference type="STRING" id="444157.Tneu_1743"/>
    <dbReference type="GeneID" id="6165323"/>
    <dbReference type="KEGG" id="tne:Tneu_1743"/>
    <dbReference type="eggNOG" id="arCOG04202">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080076_0_0_2"/>
    <dbReference type="OrthoDB" id="25211at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043740">
        <property type="term" value="F:GTP cyclohydrolase IIa activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1230">
        <property type="entry name" value="Nucleotide cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00608">
        <property type="entry name" value="GTP_cyclohydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007839">
        <property type="entry name" value="GTP_CycHdrlase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42202">
        <property type="entry name" value="GTP CYCLOHYDROLASE III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42202:SF1">
        <property type="entry name" value="GTP CYCLOHYDROLASE III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05165">
        <property type="entry name" value="GCH_III"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009265">
        <property type="entry name" value="GTP_cyclohydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0342">GTP-binding</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000147165" description="GTP cyclohydrolase III">
        <location>
            <begin position="1"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00608"/>
        </source>
    </evidence>
    <sequence length="221" mass="23940" checksum="EAE763E4FB94405F" modified="2008-05-20" version="1">MHGVVVVELKGYREWTESLGPRREHIIQQVQSRIQAAVWRSFTAVGALPHHFRYDFYIALVNGVSLDLVKRAVEKAARASPVGAGFCLGVGETPYEAYLRCGGGGGGAASPAVVAHMDVINSTEATRRNGPLDVYLKVVKLLGQLGERCKDLGCMAFYLGGDNIALFLPSPNAIYSILDGVDLRVRVGVGVAKRPYNAFVRATWALDRLRSAGREGVEVVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAW6</accession>
    <name>B1YAW6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1748</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351085.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAW6"/>
    <dbReference type="STRING" id="444157.Tneu_1748"/>
    <dbReference type="GeneID" id="6165319"/>
    <dbReference type="KEGG" id="tne:Tneu_1748"/>
    <dbReference type="eggNOG" id="arCOG01791">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069129_1_2_2"/>
    <dbReference type="OrthoDB" id="1018at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43591">
        <property type="entry name" value="METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43591:SF110">
        <property type="entry name" value="RHODANESE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase" evidence="1">
        <location>
            <begin position="44"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="257" mass="29239" checksum="D61FA2772581224A" modified="2008-05-20" version="1">MSWVDRFFDDVYLDFMQHYRGEEASRAEAELVRRALGVEPGVRVLDVACGHGRHMAYMPRDSVVGVDINALYLRQAKRHGDVVQADVRNLPFRRGAFHGAYIMHSTFGMFGEEAEMEMLTWLSGVLKQGGRLLIDVANKEKIEDIYASLGEMWNFWISAGPYRVLSTAYYNPLTSRIREVRHIYRGGQYVGERTLELTLYSLGELRLLLSAVGFTVVEVYGDFNGERYDRRSDRLIVVAVKTGAVSKALREAAQWSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB20</accession>
    <name>B1YB20_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1802</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351139.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB20"/>
    <dbReference type="STRING" id="444157.Tneu_1802"/>
    <dbReference type="GeneID" id="6164710"/>
    <dbReference type="KEGG" id="tne:Tneu_1802"/>
    <dbReference type="eggNOG" id="arCOG08081">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1881156_0_0_2"/>
    <dbReference type="OrthoDB" id="386379at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="23"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="113"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="135" mass="14056" checksum="B6D51D7DF0DD005A" modified="2008-05-20" version="1">MLWAFLITAVALIAAMLRTRDNILAAISLTFLGVVVAGAIWALYPTLSVAFILVALVYVVAALTLVIVAVASITERGASAELRPAALAALAALPMALLPGAQPQTPNAVLDVWIIPISAALLLYAFIIAARLTHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB30</accession>
    <name>B1YB30_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">tRNA(Phe) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-methyltransferase</fullName>
            <ecNumber evidence="7">2.1.1.282</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">tRNA wyosine derivatives biosynthesis protein Taw3</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">taw3</name>
        <name evidence="9" type="ordered locus">Tneu_1813</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wyosine derivatives biosynthesis pathway. Probably methylates N-4 position of wybutosine-86 to produce wybutosine-72.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>4-demethyl-7-[(3S)-3-amino-3-carboxypropyl]wyosine(37) in tRNA(Phe) + S-adenosyl-L-methionine = 7-[(3S)-3-amino-3-carboxypropyl]wyosine(37) in tRNA(Phe) + S-adenosyl-L-homocysteine + H(+)</text>
            <dbReference type="Rhea" id="RHEA:36635"/>
            <dbReference type="Rhea" id="RHEA-COMP:10378"/>
            <dbReference type="Rhea" id="RHEA-COMP:10379"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:73543"/>
            <dbReference type="ChEBI" id="CHEBI:73550"/>
            <dbReference type="EC" id="2.1.1.282"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TYW3 family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.282" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351149.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB30"/>
    <dbReference type="STRING" id="444157.Tneu_1813"/>
    <dbReference type="GeneID" id="6164505"/>
    <dbReference type="KEGG" id="tne:Tneu_1813"/>
    <dbReference type="eggNOG" id="arCOG04156">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047426_2_1_2"/>
    <dbReference type="OrthoDB" id="19299at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008175">
        <property type="term" value="F:tRNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030488">
        <property type="term" value="P:tRNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031591">
        <property type="term" value="P:wybutosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1960.10:FF:000010">
        <property type="entry name" value="tRNA(Phe) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-methyltransferase 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1960.10">
        <property type="entry name" value="tRNA wybutosine-synthesizing-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00266">
        <property type="entry name" value="TYW3_archaea"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022908">
        <property type="entry name" value="Taw3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003827">
        <property type="entry name" value="tRNA_yW-synthesising"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036602">
        <property type="entry name" value="tRNA_yW-synthesising-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48418">
        <property type="entry name" value="TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48418:SF1">
        <property type="entry name" value="TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02676">
        <property type="entry name" value="TYW3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111278">
        <property type="entry name" value="SSo0622-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 7" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="tRNA wybutosine-synthesizing protein" evidence="8">
        <location>
            <begin position="12"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00030554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="217" mass="24223" checksum="761100C7FD5A03FB" modified="2008-05-20" version="1">MGAVDRRVFEARKRVFVERLEREALQERVDGDILPLLRLLNRHPAIYTTSSCSGRIMVAEAVRPSYSKGRGFRPVAKWHHPAPPDLVRAAADQVDNAWLMVRGAILHLAAADAKTAYRLVEVGRETGHKHSGIIAINRGGIFVEILGEERLDIPLKRGGIYVSDLETAVDMANKTLVLAKLRLYWLAARLEAELFGLETPESDEIRRAIRRAANCLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB32</accession>
    <name>B1YB32_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1815</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351151.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB32"/>
    <dbReference type="STRING" id="444157.Tneu_1815"/>
    <dbReference type="GeneID" id="6164297"/>
    <dbReference type="KEGG" id="tne:Tneu_1815"/>
    <dbReference type="eggNOG" id="arCOG05640">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_985594_0_0_2"/>
    <dbReference type="OrthoDB" id="29032at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="271" mass="29306" checksum="A3B4008C723187A8" modified="2008-05-20" version="1">MTSVANYAIAIAAALLAAAAASLAYVLYIHTTAPKPAPTTVPPTTPAATPTATTPPPTTTSAATTEATRILHVALYISTPNVTRCAGIGPQYIYYFNITVDRKRLEDPVSVYVFKAVSANATYDLTTAALLPLNRYYFMPYNQAELNRTGVVNVYLELVSSVPLQINAVEYLGRRYPIEKVVYVACIKRIEIKGAFNRTALTRGFLNLIPTDVPYVVNITVPPGLYRIAAPPDVEVTPATLQGGGNATLVIKFVNKPLVYDTLILGARQER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB57</accession>
    <name>B1YB57_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">4-alpha-glucanotransferase</fullName>
            <ecNumber evidence="3">2.4.1.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Amylomaltase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Disproportionating enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0235</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Transfers a segment of a (1-&gt;4)-alpha-D-glucan to a new position in an acceptor, which may be glucose or a (1-&gt;4)-alpha-D-glucan.</text>
            <dbReference type="EC" id="2.4.1.25"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the disproportionating enzyme family.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.25" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349609.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB57"/>
    <dbReference type="STRING" id="444157.Tneu_0235"/>
    <dbReference type="CAZy" id="GH77">
        <property type="family name" value="Glycoside Hydrolase Family 77"/>
    </dbReference>
    <dbReference type="GeneID" id="6165917"/>
    <dbReference type="KEGG" id="tne:Tneu_0235"/>
    <dbReference type="eggNOG" id="arCOG04681">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014132_1_0_2"/>
    <dbReference type="OrthoDB" id="104697at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004134">
        <property type="term" value="F:4-alpha-glucanotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003385">
        <property type="entry name" value="Glyco_hydro_77"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00217">
        <property type="entry name" value="malQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF011080">
        <property type="entry name" value="PRK14508.1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32438">
        <property type="entry name" value="4-ALPHA-GLUCANOTRANSFERASE DPE1, CHLOROPLASTIC/AMYLOPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32438:SF5">
        <property type="entry name" value="4-ALPHA-GLUCANOTRANSFERASE DPE1, CHLOROPLASTIC_AMYLOPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02446">
        <property type="entry name" value="Glyco_hydro_77"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4 9" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00031423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00031501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="479" mass="54983" checksum="58F12E87F9488D0A" modified="2008-05-20" version="1">MLRGFGVLLHISSLPGGCLVGDLGPSAYRFADFLSEAEATYWQILPLSHTLPEYDDSPYSAASLLAGNPALVSLEKMAQLGLAKRAPPSCPPAERARFAEAWELKRRYLEEAFEGRLGWRDYEEFAARNSWWLEPYGRYMALREAFGGPWTAWPAWARRPNADLPPRLERRADFYRYVQFHFWLQWEELKRYVNSLGVFIIGDLPIYPALDSADVWEGQRYFKLAPDGAPLYVSGVPPDYYSPTGQLWGTPVYNWAELRRDRYVWWTRRLTRLLSIFDYIRLDHFRGYAAYWEVPYGEPTAVRGRWAPGPGEELFRAAEDALPRLIAEDLGFITPDVVELRYRLGIPGMRVLQFAWDGNPANEHKPHNYERNLVAYTGTHDNNTTLGWWREETTPRSRREALAYMGGCRGGVSWCFIRLLFSTVADVAVVPMQDALGLGSEARMNKPGTARGNWKWRMAGDPPRAVAARLRRLARIYGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="94" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB84</accession>
    <name>B1YB84_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0262</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349636.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB84"/>
    <dbReference type="STRING" id="444157.Tneu_0262"/>
    <dbReference type="GeneID" id="6165560"/>
    <dbReference type="KEGG" id="tne:Tneu_0262"/>
    <dbReference type="eggNOG" id="arCOG00201">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_11_2"/>
    <dbReference type="OrthoDB" id="24644at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050153">
        <property type="entry name" value="Metal_Ion_Import_ABC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42734">
        <property type="entry name" value="METAL TRANSPORT SYSTEM ATP-BINDING PROTEIN TM_0124-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42734:SF17">
        <property type="entry name" value="METAL TRANSPORT SYSTEM ATP-BINDING PROTEIN TM_0124-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="3"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="243" mass="26619" checksum="568197FE65DE4E0B" modified="2008-05-20" version="1">MSLVVKNVTVLRGGRPAVEDISFSAEREFVLVAGPNGAGKTTLYMAILGLLPHRGEICVEGVCGAERARKIGYVPQVIRVEAQATVWEYVYLPARFRGVKEAKRAAEEALAAVGLTHLRDRPLGSLSGGQLQRAAIARALAVGGDVLLLDEPLANVDPQGRIELLALLRELKRGRTVLMTSHELTLPTNLADKILLLNRRLIAYGPPEEVLREEVLSRVYRYVRIAKTPAGYICVTEDYAHPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBB0</accession>
    <name>B1YBB0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 19">Adenosylcobinamide-GDP ribazoletransferase</fullName>
            <ecNumber evidence="5 19">2.7.8.26</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="16 19">Cobalamin synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="15 19">Cobalamin-5'-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="primary">cobS</name>
        <name evidence="20" type="ordered locus">Tneu_0289</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="20" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14 19">Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="17 19">
            <text>alpha-ribazole + adenosylcob(III)inamide-GDP = adenosylcob(III)alamin + GMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16049"/>
            <dbReference type="ChEBI" id="CHEBI:10329"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:60487"/>
            <dbReference type="EC" id="2.7.8.26"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="18 19">
            <text>alpha-ribazole 5'-phosphate + adenosylcob(III)inamide-GDP = adenosylcob(III)alamin 5'-phosphate + GMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23560"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57918"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:60487"/>
            <dbReference type="ChEBI" id="CHEBI:60493"/>
            <dbReference type="EC" id="2.7.8.26"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 19">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 19">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 7/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 19">Cell membrane</location>
            <topology evidence="2 19">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 19">Belongs to the CobS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.26" evidence="5 19"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349662.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBB0"/>
    <dbReference type="STRING" id="444157.Tneu_0289"/>
    <dbReference type="GeneID" id="6165657"/>
    <dbReference type="KEGG" id="tne:Tneu_0289"/>
    <dbReference type="eggNOG" id="arCOG04338">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057426_2_0_2"/>
    <dbReference type="OrthoDB" id="11748at2157"/>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00238"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051073">
        <property type="term" value="F:adenosylcobinamide-GDP ribazoletransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008818">
        <property type="term" value="F:cobalamin 5'-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00719">
        <property type="entry name" value="CobS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003805">
        <property type="entry name" value="CobS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34148">
        <property type="entry name" value="ADENOSYLCOBINAMIDE-GDP RIBAZOLETRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34148:SF1">
        <property type="entry name" value="ADENOSYLCOBINAMIDE-GDP RIBAZOLETRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02654">
        <property type="entry name" value="CobS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 19" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 19" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="11 19" id="KW-0460">Magnesium</keyword>
    <keyword evidence="13 19" id="KW-0472">Membrane</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 19" id="KW-0808">Transferase</keyword>
    <keyword evidence="10 19" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12 19" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="95"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="161"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00015850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00025228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00032605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00032853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00048623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00049504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="ACB39241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="216" mass="22279" checksum="4846468C01FAA3B3" modified="2008-05-20" version="1">MRCLKAVVAFFTAFPVGGAELDFSCVWAAPYLAGLAVGGAGGAVYLLTHSPAAAYAALLLATGLHHLDGLADVGDALMVRDRERARRVLEDPRRGVGGIFAVAALFVLAASAKPGGWLDYVAADVYSKALTLAVAAPSRPFKEGLGSLFIAAARRQWPGALLALAAAAWLHPAAFLAATALSLAFYAAAYRHLGGANGDLMGALLEVSRALYLVSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBB5</accession>
    <name>B1YBB5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0284 protein Tneu_0295</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0295</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0284 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349667.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBB5"/>
    <dbReference type="STRING" id="444157.Tneu_0295"/>
    <dbReference type="GeneID" id="6164801"/>
    <dbReference type="KEGG" id="tne:Tneu_0295"/>
    <dbReference type="eggNOG" id="arCOG04272">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053134_0_0_2"/>
    <dbReference type="OrthoDB" id="9136at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008939">
        <property type="term" value="F:nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02439">
        <property type="entry name" value="DMB-PRT_CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01086">
        <property type="entry name" value="UPF0284"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003200">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002805">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036087">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00303">
        <property type="entry name" value="nicotinate mononucleotide-dependent phosphoribosyltransferase CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003368">
        <property type="entry name" value="PRK04447.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003372">
        <property type="entry name" value="PRK04447.1-5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38811">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38811:SF1">
        <property type="entry name" value="UPF0284 PROTEIN SLL1500"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02277">
        <property type="entry name" value="DBI_PRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52733">
        <property type="entry name" value="Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="329" mass="34232" checksum="46EAEB90CBCD6947" modified="2008-05-20" version="1">MAELLVVVVGTTDVSLIPGISIAGPSPEATHYTPALDVEYLLTGRPKTLDVVPVTPDGIPTPAVVTRALTGDLPKLVVDAGSRIPPKIPRVVLGGVPGGDIRRGAMPREAAEEVAANGRLLGRQLARWGRVAIGESIPGGTTTAMAILLALGYDAWGRTSSASPDNPKELKARVVKEALARVKPPLDAVTAASEVGDPVHLAVASIALGVAEGGGEVVLAGGTQMAAAAALYKALGGDVERLAVATTRWILEDKSADFLGLMREVGVRRVYASRSSFGGSRCRGLRAYDRGYVKEGVAMGYALWRAESSGVDPLPQVEAELERLGKCYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBB7</accession>
    <name>B1YBB7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Precorrin-3B C17-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0297</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349669.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBB7"/>
    <dbReference type="STRING" id="444157.Tneu_0297"/>
    <dbReference type="GeneID" id="6166032"/>
    <dbReference type="KEGG" id="tne:Tneu_0297"/>
    <dbReference type="eggNOG" id="arCOG00647">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047948_2_0_2"/>
    <dbReference type="OrthoDB" id="35891at2157"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11646">
        <property type="entry name" value="Precorrin_3B_C17_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="entry name" value="Cobalt-precorrin-4 Transmethylase, Domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="entry name" value="Methyltransferase, Cobalt-precorrin-4 Transmethylase, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006363">
        <property type="entry name" value="Cbl_synth_CobJ/CibH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051810">
        <property type="entry name" value="Precorrin_MeTrfase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01466">
        <property type="entry name" value="cobJ_cbiH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004423">
        <property type="entry name" value="PRK05765.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47036">
        <property type="entry name" value="COBALT-FACTOR III C(17)-METHYLTRANSFERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47036:SF1">
        <property type="entry name" value="COBALT-FACTOR III C(17)-METHYLTRANSFERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="Tetrapyrrole methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Tetrapyrrole methylase" evidence="6">
        <location>
            <begin position="5"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="245" mass="26547" checksum="8E878755D61B3D4F" modified="2008-05-20" version="1">MSIRVVGFGPGGAALRTPAAVEAIRESDVVVGYETYVAMVEDLLGGKEVVSAKMRQEVYRARVAVEMAREGKRVAVISDGDPEIFGMAPLVLEMLSRYGWRPSGLEVVPGVTAALAAGARLGAPLGSDVAFINLSPLLTPREVILRRVEAAAAADYVIAFYNPIDRGLLREALAAVARWRGGQTPVGVVKDAYRRGERVYVTTLDSVDVDAVDMRTTVIVGNSESYIWEGYIITPRGYHRKYAYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBB8</accession>
    <name>B1YBB8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Cobalt-precorrin-5B C(1)-methyltransferase</fullName>
            <ecNumber evidence="5">2.1.1.195</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Cobalt-precorrin-6A synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">cbiD</name>
        <name evidence="6" type="ordered locus">Tneu_0298</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>Co-precorrin-5B + S-adenosyl-L-methionine = Co-precorrin-6A + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:26285"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:60063"/>
            <dbReference type="ChEBI" id="CHEBI:60064"/>
            <dbReference type="EC" id="2.1.1.195"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; adenosylcobalamin biosynthesis; cob(II)yrinate a,c-diamide from sirohydrochlorin (anaerobic route): step 6/10.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the CbiD family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.195" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349670.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBB8"/>
    <dbReference type="STRING" id="444157.Tneu_0298"/>
    <dbReference type="GeneID" id="6165844"/>
    <dbReference type="KEGG" id="tne:Tneu_0298"/>
    <dbReference type="eggNOG" id="arCOG04383">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041273_1_0_2"/>
    <dbReference type="OrthoDB" id="10423at2157"/>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00227"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043780">
        <property type="term" value="F:cobalt-precorrin-5B C1-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019251">
        <property type="term" value="P:anaerobic cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2110.10">
        <property type="entry name" value="CbiD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00787">
        <property type="entry name" value="CbiD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002748">
        <property type="entry name" value="CbiD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036074">
        <property type="entry name" value="CbiD_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00312">
        <property type="entry name" value="cbiD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35863">
        <property type="entry name" value="COBALT-PRECORRIN-5B C(1)-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35863:SF1">
        <property type="entry name" value="COBALT-PRECORRIN-5B C(1)-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01888">
        <property type="entry name" value="CbiD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF026782">
        <property type="entry name" value="CbiD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111342">
        <property type="entry name" value="CbiD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="341" mass="35231" checksum="DD65B13C2F048C5B" modified="2008-05-20" version="1">MLTLKRFGITTGAAAAAAAKAAALHWRGVEAKAVTVPTPVGLRLEIYVERVYREGEWSCAEVRKFSGDNPDVLDGAVVKACFKPGGSGVSIRGGRGVGVVTRPGLPVPPGEPAINPVPRAMIAEAVREAGFTGGEVVVEVPEGERLAELTMNRDVGVVGGVSILGTTGIETPVSDEDYIEHVRAELRAVRAVSDSVVIATGNRAVEYAKALWGNAVVKVGDLLGEAAKEAASLGFRAIVVAGLPAKIVKVAAGAMNTHSRYCDGRIEALTHAAVSVGVPPEVVKEVAASASVGEALVKLGVFRGAVLEAVARRAKERLSKYAGAPVEVVIFYDGGELAARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBC2</accession>
    <name>B1YBC2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0302</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349674.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBC2"/>
    <dbReference type="STRING" id="444157.Tneu_0302"/>
    <dbReference type="GeneID" id="6165822"/>
    <dbReference type="KEGG" id="tne:Tneu_0302"/>
    <dbReference type="eggNOG" id="arCOG01869">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_833194_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008962">
        <property type="term" value="F:phosphatidylglycerophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3760.10">
        <property type="entry name" value="PgpA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002808">
        <property type="entry name" value="AdoCbi_amidolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052209">
        <property type="entry name" value="CbiZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036681">
        <property type="entry name" value="PgpA-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF038002">
        <property type="entry name" value="bifunc_CbiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35336">
        <property type="entry name" value="ADENOSYLCOBINAMIDE AMIDOHYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35336:SF5">
        <property type="entry name" value="ADENOSYLCOBINAMIDE AMIDOHYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01955">
        <property type="entry name" value="CbiZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101307">
        <property type="entry name" value="YutG-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="326" mass="34834" checksum="20384234CF3FEA5E" modified="2008-05-20" version="1">MIRVEEGALWVEAPGVALSSTVDGGVREVKGAVFRRVAKHMTCREMEEAAVSGYLNFYTAVDVVKHHWAALGRYAAAVATAGFGNTINVLVVVQAEPDLRALADVYRLAVEAKAVAAVDMGLRRGLARLGGDVSDAVAVIATGGVKARYMGLGTEVGEEVYALVQEAVKKAAGPPDLDQELRRYLGVGVGDLLRLVLEAYRQAPVPGAQGVEEAAADMLSRLLQDPNVWAFIYAAGELDAKAASGTHRGLTPQEHAQDSKKIVADEAMGVALAQYINGFKALQAMYWLDRRKPPPLDRLPMYTDDVAAALAGGLLSRLYDRLLHGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBC9</accession>
    <name>B1YBC9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxidoreductase molybdopterin binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0309</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349681.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBC9"/>
    <dbReference type="STRING" id="444157.Tneu_0309"/>
    <dbReference type="GeneID" id="6166199"/>
    <dbReference type="KEGG" id="tne:Tneu_0309"/>
    <dbReference type="eggNOG" id="arCOG00264">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094953_0_0_2"/>
    <dbReference type="OrthoDB" id="24039at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.420.10">
        <property type="entry name" value="Oxidoreductase, molybdopterin-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000572">
        <property type="entry name" value="OxRdtase_Mopterin-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036374">
        <property type="entry name" value="OxRdtase_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43032:SF4">
        <property type="entry name" value="OXIDOREDUCTASE MOLYBDOPTERIN-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43032">
        <property type="entry name" value="PROTEIN-METHIONINE-SULFOXIDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00174">
        <property type="entry name" value="Oxidored_molyb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56524">
        <property type="entry name" value="Oxidoreductase molybdopterin-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidoreductase molybdopterin-binding" evidence="1">
        <location>
            <begin position="30"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="202" mass="23063" checksum="D60245D632EC6CEF" modified="2008-05-20" version="1">MCKEIRLDLPWPPNQTRARRFVVYDVFDPPDIPPEKHVIRIYGAVEKPLEVPLTKLMENCVELVAPFHCVTGWSIESVRWRGAPLKPLLEEARPYGQYALAWGADGYSASLPLDALMEETTIVAWALNGEPLPKKHGAPARLVVPTRYAWKSVKYFAAVEVLTEPVPGYWEMQGYSLNADPWREERFDFGRPVMRGRRVSIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBD0</accession>
    <name>B1YBD0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">TIGR00304 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0310</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349682.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBD0"/>
    <dbReference type="GeneID" id="6166178"/>
    <dbReference type="KEGG" id="tne:Tneu_0310"/>
    <dbReference type="eggNOG" id="arCOG11173">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_149108_3_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002849">
        <property type="entry name" value="DUF131"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00304">
        <property type="entry name" value="TIGR00304 family membrane protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01998">
        <property type="entry name" value="DUF131"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="79" mass="8492" checksum="4B17E13B3A6AC06E" modified="2008-05-20" version="1">MEIVVLGLLLIFLGFILIILATLRVAKEEARRAEAGGVIIVGPVPIVFGTSQRAAAITMVLAVVLTLLALLLFLLPLWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBF9</accession>
    <name>B1YBF9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="11">CBS domain containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1844</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351180.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBF9"/>
    <dbReference type="STRING" id="444157.Tneu_1844"/>
    <dbReference type="GeneID" id="6164782"/>
    <dbReference type="KEGG" id="tne:Tneu_1844"/>
    <dbReference type="eggNOG" id="arCOG00632">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_49_0_2"/>
    <dbReference type="OrthoDB" id="117970at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09836">
        <property type="entry name" value="CBS_pair_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02205">
        <property type="entry name" value="CBS_pair_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="entry name" value="CBS-domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43045">
        <property type="entry name" value="SHIKIMATE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43045:SF1">
        <property type="entry name" value="SHIKIMATE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="CBS-domain pair"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00217">
        <property type="entry name" value="SUGAR_TRANSPORT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0129">CBS domain</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="49"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="84"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="109"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="150"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="185"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="237"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="277"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="309"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="340"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="376"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="405"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily (MFS) profile" evidence="9">
        <location>
            <begin position="13"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="10">
        <location>
            <begin position="505"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="10">
        <location>
            <begin position="575"/>
            <end position="630"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="10">
        <location>
            <begin position="638"/>
            <end position="688"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="688" mass="74607" checksum="0DF888A4E8F1C9CD" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBM2</accession>
    <name>FOLD_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Bifunctional protein FolD</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="1">Methylenetetrahydrofolate dehydrogenase</fullName>
                <ecNumber evidence="1">1.5.1.5</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="1">Methenyltetrahydrofolate cyclohydrolase</fullName>
                <ecNumber evidence="1">3.5.4.9</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="1" type="primary">folD</name>
        <name type="ordered locus">Tneu_1909</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + NADP(+) = (6R)-5,10-methenyltetrahydrofolate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:22812"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6R)-5,10-methenyltetrahydrofolate + H2O = (6R)-10-formyltetrahydrofolate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="ChEBI" id="CHEBI:195366"/>
            <dbReference type="EC" id="3.5.4.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.5" evidence="1"/>
    <dbReference type="EC" id="3.5.4.9" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351243.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBM2"/>
    <dbReference type="SMR" id="B1YBM2"/>
    <dbReference type="STRING" id="444157.Tneu_1909"/>
    <dbReference type="GeneID" id="6164915"/>
    <dbReference type="KEGG" id="tne:Tneu_1909"/>
    <dbReference type="eggNOG" id="arCOG04538">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034045_2_1_2"/>
    <dbReference type="OrthoDB" id="9455at2157"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004477">
        <property type="term" value="F:methenyltetrahydrofolate cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004488">
        <property type="term" value="F:methylenetetrahydrofolate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:L-histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10860">
        <property type="entry name" value="Leucine Dehydrogenase, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01576">
        <property type="entry name" value="THF_DHG_CYH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminoacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000672">
        <property type="entry name" value="THF_DH/CycHdrlase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020630">
        <property type="entry name" value="THF_DH/CycHdrlase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020631">
        <property type="entry name" value="THF_DH/CycHdrlase_NAD-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48099:SF5">
        <property type="entry name" value="C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48099">
        <property type="entry name" value="C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00763">
        <property type="entry name" value="THF_DHG_CYH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02882">
        <property type="entry name" value="THF_DHG_CYH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00085">
        <property type="entry name" value="THFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="Aminoacid dehydrogenase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0368">Histidine biosynthesis</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0486">Methionine biosynthesis</keyword>
    <keyword id="KW-0511">Multifunctional enzyme</keyword>
    <keyword id="KW-0521">NADP</keyword>
    <keyword id="KW-0554">One-carbon metabolism</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-0658">Purine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000147532" description="Bifunctional protein FolD">
        <location>
            <begin position="1"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="174"/>
            <end position="176"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01576"/>
        </source>
    </evidence>
    <sequence length="311" mass="34931" checksum="71F20FEEF10D473B" modified="2008-05-20" version="1">MVVWIRGDRLHAETLQWARRHVEELERFGVTPKLAVLLLNDDPVELETQRRYVSLKAKDVRSIGGEVEIYELYKEPPERREAAALRLIERLNNADDVTGVLIQKPLPPYIDEGRLFERLSPIKDVDGLTPENKKRLVAGFDLDRDILPCTPAGILELFRQYQVEVRGRDVVVVGKGTLVGFPLSIMLMQMDATVTTLHALSKDRAYYTRKADIVISAVGRPPELYGDNPWRLTGDMIKEGAVVVGVGGKVDPATKRWYFDVDENSVAEKASYLTPNIGGVGLATRARLVKNLIITTYMVLTRVTSPRLLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBP9</accession>
    <name>B1YBP9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Methyltransferase-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1936</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351270.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBP9"/>
    <dbReference type="STRING" id="444157.Tneu_1936"/>
    <dbReference type="GeneID" id="6165812"/>
    <dbReference type="KEGG" id="tne:Tneu_1936"/>
    <dbReference type="eggNOG" id="arCOG00054">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057700_0_0_2"/>
    <dbReference type="OrthoDB" id="1018at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008276">
        <property type="term" value="F:protein methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050078">
        <property type="entry name" value="Ribosomal_L11_MeTrfase_PrmA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43648">
        <property type="entry name" value="ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43648:SF1">
        <property type="entry name" value="ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03602">
        <property type="entry name" value="Cons_hypoth95"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="278" mass="31359" checksum="26E9D390E4831B6B" modified="2008-05-20" version="1">MGPVITPVVSRWQIEDLGRREKAVSFDLEISRSEVEYLGGRARFVYGGVEYEISLDDLPEVDGESCEVFALVGGRWVELSIAASRFYKLCVFKRGWAPTLMIDGITMHSVLENPLSVTAKKIERAWGRVFECCTGLGYTAIEALRRGARHVVTVEIDLNVLALAAYNPYSRGLWSPQVDLAVGDCLSFAEAARDGAFDYVLHDPPRLSHATQRLYSESLYREFYRLLRRGGGLFHYVSQSGVKYRGLNPYKGVVERLRRAGFVVDRVKEGYGVYARKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBS3</accession>
    <name>B1YBS3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Aspartate 1-decarboxylase</fullName>
            <ecNumber evidence="9">4.1.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Aspartate alpha-decarboxylase</fullName>
        </alternativeName>
        <component>
            <recommendedName>
                <fullName evidence="9">Aspartate 1-decarboxylase beta chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="9">Aspartate 1-decarboxylase alpha chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="9" type="primary">panD</name>
        <name evidence="10" type="ordered locus">Tneu_0357</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-aspartate + H(+) = beta-alanine + CO2</text>
            <dbReference type="Rhea" id="RHEA:19497"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:57966"/>
            <dbReference type="EC" id="4.1.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </cofactor>
        <text evidence="9">Binds 1 pyruvoyl group covalently per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="9">Cofactor biosynthesis; (R)-pantothenate biosynthesis; beta-alanine from L-aspartate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Heterooctamer of four alpha and four beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="9">Is synthesized initially as an inactive proenzyme, which is activated by self-cleavage at a specific serine bond to produce a beta-subunit with a hydroxyl group at its C-terminus and an alpha-subunit with a pyruvoyl group at its N-terminus.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the PanD family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.11" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349727.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBS3"/>
    <dbReference type="STRING" id="444157.Tneu_0357"/>
    <dbReference type="GeneID" id="6164879"/>
    <dbReference type="KEGG" id="tne:Tneu_0357"/>
    <dbReference type="eggNOG" id="arCOG04813">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115305_2_1_2"/>
    <dbReference type="OrthoDB" id="52900at2157"/>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00002"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004068">
        <property type="term" value="F:aspartate 1-decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006523">
        <property type="term" value="P:alanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00446">
        <property type="entry name" value="PanD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003190">
        <property type="entry name" value="Asp_decarbox"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21012">
        <property type="entry name" value="ASPARTATE 1-DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21012:SF0">
        <property type="entry name" value="ASPARTATE 1-DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02261">
        <property type="entry name" value="Asp_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="ADC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="1 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 9" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="6 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 9" id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0704">Schiff base</keyword>
    <keyword evidence="5 9" id="KW-0865">Zymogen</keyword>
    <feature type="chain" id="PRO_5023416146" description="Aspartate 1-decarboxylase beta chain" evidence="9">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5023416145" description="Aspartate 1-decarboxylase alpha chain" evidence="9">
        <location>
            <begin position="24"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate; via pyruvic acid" evidence="9">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="9">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="70"/>
            <end position="72"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="Pyruvic acid (Ser)" evidence="9">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="119" mass="12668" checksum="6CDD08987D16C76C" modified="2008-05-20" version="1">MPVLLRAKAHGLVVTGKNLWYEGSLTLGRDIMEAAGFYPLERVEVYNVTNGARFSTYVIPGAAGEVVLNGAAARLGEVGDVLIVAAYDCVEDPTAHVATVAIFQGNRLKEVRKIPTGVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBT1</accession>
    <name>B1YBT1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pyrimidine dimer DNA glycosylase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0365</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349735.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBT1"/>
    <dbReference type="STRING" id="444157.Tneu_0365"/>
    <dbReference type="GeneID" id="6164946"/>
    <dbReference type="KEGG" id="tne:Tneu_0365"/>
    <dbReference type="eggNOG" id="arCOG05626">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1431695_0_0_2"/>
    <dbReference type="OrthoDB" id="24328at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004260">
        <property type="entry name" value="Pyr-dimer_DNA_glycosylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03013">
        <property type="entry name" value="Pyr_excise"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="184" mass="21545" checksum="2025459011366839" modified="2008-05-20" version="1">MQIFRPYRDHARSAAFLDDKRLGKQRVEAKQVILAILRRRGVLRDGRRGWLNHPIVLMYDAGPYIDDLVAYFHAVVEEWRRRGRRNSLSLADVQHLIALLPSAPGTPITHTHEVEYRRVLLLKDPCHYLGKLTEEELAEVLETDPTPIPGVNTWIFQIWGRYRQFVEALRRGQVDCRGIFPRDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBT8</accession>
    <name>B1YBT8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0372</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349742.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBT8"/>
    <dbReference type="STRING" id="444157.Tneu_0372"/>
    <dbReference type="GeneID" id="6165161"/>
    <dbReference type="KEGG" id="tne:Tneu_0372"/>
    <dbReference type="eggNOG" id="arCOG01007">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013016_0_2_2"/>
    <dbReference type="OrthoDB" id="57034at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033214">
        <property type="term" value="P:siderophore-iron import into cell"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd06550">
        <property type="entry name" value="TM_ABC_iron-siderophores_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.3470.10:FF:000001">
        <property type="entry name" value="Vitamin B12 ABC transporter permease BtuC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="entry name" value="ABC transporter involved in vitamin B12 uptake, BtuC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472:SF70">
        <property type="entry name" value="MOLYBDATE IMPORT SYSTEM PERMEASE PROTEIN MOLB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="ABC transporter involved in vitamin B12 uptake, BtuC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="79"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="121"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="160"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="192"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="250"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="319"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="346" mass="36476" checksum="7274712418E69D05" modified="2008-05-20" version="1">MWVRYLVYGLPLAVFLVSISVGAYPIPIYDVVMVVSAKLASLFSTAVSVVTFGVVSPAVNLHYPTTYEVVIVGIRMPRVVFSMAVGAALALSGLILQAMFKNPLVDSYILGISSGAAFGATLAIGFLAVASVTPIAFVFALLAVFMTYSLARIGGSVTPVSLVLAGIIVNALFTALTSLLKFLMEHNRLAAAVYWLMGSFSGVGWDAVVVAVPVISALGALAYLLRWRLDVLSFGEEAKTLGVDVEKLKALFVLVATLLTAVSVAYSGIIGWVGLMVPHIMRMAFGPSHRGLVPLTIAGGAAFMGAADTLARTVATFEIPVGILTTVLGVPFFIYLLRKTGGRWHA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC47</accession>
    <name>PIMT_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Protein-L-isoaspartate O-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.77</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">L-isoaspartyl protein carboxyl methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Protein L-isoaspartyl methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Protein-beta-aspartate methyltransferase</fullName>
            <shortName evidence="1">PIMT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pcm</name>
        <name type="ordered locus">Tneu_1986</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[protein]-L-isoaspartate + S-adenosyl-L-methionine = [protein]-L-isoaspartate alpha-methyl ester + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:12705"/>
            <dbReference type="Rhea" id="RHEA-COMP:12143"/>
            <dbReference type="Rhea" id="RHEA-COMP:12144"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90596"/>
            <dbReference type="ChEBI" id="CHEBI:90598"/>
            <dbReference type="EC" id="2.1.1.77"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyltransferase superfamily. L-isoaspartyl/D-aspartyl protein methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.77" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351320.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC47"/>
    <dbReference type="SMR" id="B1YC47"/>
    <dbReference type="STRING" id="444157.Tneu_1986"/>
    <dbReference type="GeneID" id="6165684"/>
    <dbReference type="KEGG" id="tne:Tneu_1986"/>
    <dbReference type="eggNOG" id="arCOG00976">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055432_2_0_2"/>
    <dbReference type="OrthoDB" id="33618at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004719">
        <property type="term" value="F:protein-L-isoaspartate (D-aspartate) O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030091">
        <property type="term" value="P:protein repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.150:FF:000010">
        <property type="entry name" value="Protein-L-isoaspartate O-methyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00090">
        <property type="entry name" value="PIMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000682">
        <property type="entry name" value="PCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00080">
        <property type="entry name" value="pimt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001453">
        <property type="entry name" value="PRK00312.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11579">
        <property type="entry name" value="PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11579:SF0">
        <property type="entry name" value="PROTEIN-L-ISOASPARTATE(D-ASPARTATE) O-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01135">
        <property type="entry name" value="PCMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01279">
        <property type="entry name" value="PCMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0489">Methyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000093295" description="Protein-L-isoaspartate O-methyltransferase">
        <location>
            <begin position="1"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00090"/>
        </source>
    </evidence>
    <sequence length="207" mass="23206" checksum="26BDE7E32B7B3BA6" modified="2008-05-20" version="1">MAHRLVEELVREGVIKSESVRRAMLAVPREEFVMPEYRMMAYEDRPLPLFADATISAPHMVAMMCELVEPKPGMKILEVGAGSGYQAAVCAEAMERRGRVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGRSGLERHAPFDAIIVTAAARQIPPALVRQLKEGGTLVIPLVEHMGQILYKVTKRGERVEKRAVTYVLFVPLRES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC81</accession>
    <name>B1YC81_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0447</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349814.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC81"/>
    <dbReference type="STRING" id="444157.Tneu_0447"/>
    <dbReference type="GeneID" id="6166071"/>
    <dbReference type="KEGG" id="tne:Tneu_0447"/>
    <dbReference type="eggNOG" id="arCOG07421">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1451482_0_0_2"/>
    <dbReference type="OrthoDB" id="28875at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="180" mass="19242" checksum="F7EEA6E31BB34823" modified="2008-05-20" version="1">MSEVDLVLLAVLLFAGWYLGASLAARWINRRAVSRCGCEAARWLGGASSLYVDLRCGGRRVEVFINRLPWDNPLNLAASLVARRRGYTAVRLKADADLGVFDASRVGSGRRIGAFYVVNTSGPRWAVEAAAKAGEEAGAWRVTASGGVLQLLFPHTDCGRAVQSALTFLEKLPRGPPAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC92</accession>
    <name>B1YC92_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ferredoxin-dependent glutamate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0458</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glutamate synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349825.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC92"/>
    <dbReference type="STRING" id="444157.Tneu_0458"/>
    <dbReference type="GeneID" id="6165970"/>
    <dbReference type="KEGG" id="tne:Tneu_0458"/>
    <dbReference type="eggNOG" id="arCOG00619">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_592672_0_0_2"/>
    <dbReference type="OrthoDB" id="2837at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015930">
        <property type="term" value="F:glutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006537">
        <property type="term" value="P:glutamate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002932">
        <property type="entry name" value="Glu_synthdom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43819">
        <property type="entry name" value="ARCHAEAL-TYPE GLUTAMATE SYNTHASE [NADPH]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43819:SF1">
        <property type="entry name" value="ARCHAEAL-TYPE GLUTAMATE SYNTHASE [NADPH]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01645">
        <property type="entry name" value="Glu_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51395">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamate synthase" evidence="2">
        <location>
            <begin position="117"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="461" mass="49947" checksum="2B8AC3B779BE7A91" modified="2008-05-20" version="1">MLPLAKLILRLRGLYFGIRGFKEFFEDYPVDEIAHRALRGKEAVYPFGLLASYGSAVLGAGVHRRGCPRFYTLDDIQLMPPAFTPLRLKKAAELLREPTFADVSTETWVGGFPASMPVAVGSMGSTDVASKTAIAIAKAAAKAGIPLGIGENVATVRGYSRRITRGHPSFKERLLAYLTNMGKHGGVFIQQSVEDAYDELWNRVYSDKDLEQYVEEGRIGFEIKVGQGAKPGLGGVIKIPREQAEKLRQKYLIDYDGGKYATRYSVPGTFTREILAGAIRFMKTAYPKAKIWIKLGPFRDAAEVIEVASREGADAVVVDGKEGGTGMAPTVALKDLGYPTVVGLKYIKAAREAGVKTSLLIAGRLYNGGHVAKAVALGATAVYMSRPFLIAALTKGEEGVLRYIESLKVELQMAVSALGKYDVKDLAPEDVAAAAKDLAEMLSIPYIYASPPKPLEAFQQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC95</accession>
    <name>B1YC95_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0461</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349828.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC95"/>
    <dbReference type="STRING" id="444157.Tneu_0461"/>
    <dbReference type="GeneID" id="6165918"/>
    <dbReference type="KEGG" id="tne:Tneu_0461"/>
    <dbReference type="eggNOG" id="arCOG05430">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1521923_0_0_2"/>
    <dbReference type="OrthoDB" id="25753at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="175" mass="18520" checksum="D9BBC0C85CB1FBC4" modified="2008-05-20" version="1">MRGHLITAATAAAFTAAALIAVLAPPIDLLERLRAGVYTAYFSWGLVAADGSHAYGVVHGYKFAVNLWRAVICDPEGRCTSQEINAISLYLSLKAAGKLNIEDLGGGCYKVLLKPTQLAGRTIAFDGRLCLAPDGSPREVSGVLQIDGRPLDVSGTPQRVIHDFPMSDFLAVHGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCB8</accession>
    <name>B1YCB8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0484</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCB8"/>
    <dbReference type="STRING" id="444157.Tneu_0484"/>
    <dbReference type="CAZy" id="GT2">
        <property type="family name" value="Glycosyltransferase Family 2"/>
    </dbReference>
    <dbReference type="KEGG" id="tne:Tneu_0484"/>
    <dbReference type="eggNOG" id="arCOG01383">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023845_4_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43179">
        <property type="entry name" value="RHAMNOSYLTRANSFERASE WBBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43179:SF7">
        <property type="entry name" value="RHAMNOSYLTRANSFERASE WBBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="1">
        <location>
            <begin position="8"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="364" mass="41529" checksum="D105DD9B0D95D462" modified="2008-05-20" version="1">MKKSMAIFVVNYNSVSTMGQRVFNFLDTFVDVVDQDVDVWLVDNGSTDGSYSVLSQRYGGMLKFLALPKNLGYGAACSLAYRYTRLMGLEYDYYVCSNNDIELFPQKIGELLSYLRALEKAYPKGFIAAPLLLNGNDGLIDYGGYFIDDSGGTWGLRLAALTPREIRRLTPISYADGAFQIVHRNVVETIGWFDPKYFLYYEDVEFSLRAWRARFPSLLIPLVIGRHYRSASTGRSVYKVTFLSYRNRLLIIREYLGALPLLKFLLWIVSYPLRVFDQKISALDRYIEITAPGVPTPRWGIREYLEVLRHLVRALYEGFTASVGSRRAGGVPVVKTSWMKYLSMKSLLNDVRSEITRVTKDVEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCF0</accession>
    <name>B1YCF0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">PaREP15, coiled-coil protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0520</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCF0"/>
    <dbReference type="STRING" id="444157.Tneu_0520"/>
    <dbReference type="KEGG" id="tne:Tneu_0520"/>
    <dbReference type="eggNOG" id="arCOG03724">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_109669_2_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="52"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="137" mass="15296" checksum="91122FE96CB37BD0" modified="2008-05-20" version="1">MVVGGVLWTPWRRCAGGSQNSRGQGSGEAQGGKKLSTEDISLLYLGTIVNKLGGIRGEIARLEQRMEEMNRRIDETNNRIDATNQRIDALADSLSRRIDETNKRIDALSARIDDVQKTLLEIQRLLMELLKTDTGRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCJ4</accession>
    <name>B1YCJ4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">CRISPR type III-B/RAMP module-associated protein Cmr5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0565</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CRISPR system Cmr5 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349927.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCJ4"/>
    <dbReference type="STRING" id="444157.Tneu_0565"/>
    <dbReference type="GeneID" id="6165785"/>
    <dbReference type="KEGG" id="tne:Tneu_0565"/>
    <dbReference type="eggNOG" id="arCOG02654">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140810_0_0_2"/>
    <dbReference type="OrthoDB" id="382874at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.520.30">
        <property type="entry name" value="AF1862-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023101">
        <property type="entry name" value="AF1862-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010160">
        <property type="entry name" value="CRISPR-assoc_prot_Cmr5"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01881">
        <property type="entry name" value="cas_Cmr5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158568">
        <property type="entry name" value="AF1862-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00030001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="141" mass="15352" checksum="29C34C1DA102A6D3" modified="2008-05-20" version="1">MSEEVKLAVECTKAVEGYRDDDAKRRYAQRTRHFLSDITTLGVAHVVAIASARAGKDAVETGLRAQTCREAVERISQMKLTVEEASYGLYGAVLLYGLKALGVVKAASLADALLELDSPMASSAAYQYALWLKTLAEAYFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCN4</accession>
    <name>B1YCN4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0608</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349967.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCN4"/>
    <dbReference type="STRING" id="444157.Tneu_0608"/>
    <dbReference type="GeneID" id="6165498"/>
    <dbReference type="KEGG" id="tne:Tneu_0608"/>
    <dbReference type="eggNOG" id="arCOG05507">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102062_0_0_2"/>
    <dbReference type="OrthoDB" id="28042at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="236" mass="26238" checksum="C1849097486E4D32" modified="2008-05-20" version="1">MYYLHPNQALASNSTCVKYVKSLLAQYLGGGPLVFGKGDVPVLALSGFRQEDAPAVNLLTLLLYRWRRGEVELPPTAAAPVVNERAFRGVPYGGAELYFDFLWLRSWEAREITAFYHRARPRVVAVFLGGREFEVAATTDAAAQMLAVRKIVPSPHTPEGAATLKYSHALVFKIPPAPQDFELYLRHVAQMLNTAAALPPVEKKAVKVEKKELYLLHGGRQEDDGVVLDNEVYIYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCQ9</accession>
    <name>B1YCQ9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Dual specificity protein phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0633</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349992.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCQ9"/>
    <dbReference type="STRING" id="444157.Tneu_0633"/>
    <dbReference type="GeneID" id="6165378"/>
    <dbReference type="KEGG" id="tne:Tneu_0633"/>
    <dbReference type="eggNOG" id="arCOG03413">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047330_4_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004725">
        <property type="term" value="F:protein tyrosine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.190.10:FF:000157">
        <property type="entry name" value="Protein-tyrosine phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="entry name" value="Protein tyrosine phosphatase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050561">
        <property type="entry name" value="PTP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057023">
        <property type="entry name" value="PTP-SAK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000242">
        <property type="entry name" value="PTP_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016130">
        <property type="entry name" value="Tyr_Pase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000387">
        <property type="entry name" value="Tyr_Pase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23339">
        <property type="entry name" value="TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22784">
        <property type="entry name" value="PTP-SAK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="(Phosphotyrosine protein) phosphatases II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00383">
        <property type="entry name" value="TYR_PHOSPHATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50056">
        <property type="entry name" value="TYR_PHOSPHATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50055">
        <property type="entry name" value="TYR_PHOSPHATASE_PTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyrosine-protein phosphatase" evidence="2">
        <location>
            <begin position="57"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="Tyrosine specific protein phosphatases" evidence="3">
        <location>
            <begin position="79"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="163" mass="18161" checksum="AE56DBAB158772DB" modified="2008-05-20" version="1">MGRVECPYWVVENLGGSCMPRRSDVERWISLGVKSVVTLAEAWEIEYYGGWSLPEFRDVLRRQGVDWIHWPTPDGYPPRDLLALVELIDEELRRGPVVVHCVGGMGRTPTALAAYLAAKRCMGADDAIRRVEAVNPAIAITELQYYAILEVEAASRGRCGQGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCS7</accession>
    <name>B1YCS7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Nucleoside diphosphate kinase</fullName>
            <ecNumber evidence="9">2.7.4.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_0651</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>a 2'-deoxyribonucleoside 5'-diphosphate + ATP = a 2'-deoxyribonucleoside 5'-triphosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:44640"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:73316"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the NDK family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.6" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350010.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCS7"/>
    <dbReference type="SMR" id="B1YCS7"/>
    <dbReference type="STRING" id="444157.Tneu_0651"/>
    <dbReference type="GeneID" id="6165284"/>
    <dbReference type="KEGG" id="tne:Tneu_0651"/>
    <dbReference type="eggNOG" id="arCOG04313">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060216_6_3_2"/>
    <dbReference type="OrthoDB" id="6874at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004550">
        <property type="term" value="F:nucleoside diphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd04413">
        <property type="entry name" value="NDPk_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.141">
        <property type="entry name" value="Nucleoside diphosphate kinase-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034907">
        <property type="entry name" value="NDK-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036850">
        <property type="entry name" value="NDK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023005">
        <property type="entry name" value="Nucleoside_diP_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11349">
        <property type="entry name" value="NUCLEOSIDE DIPHOSPHATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00334">
        <property type="entry name" value="NDK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00562">
        <property type="entry name" value="NDK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54919">
        <property type="entry name" value="Nucleoside diphosphate kinase, NDK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00469">
        <property type="entry name" value="NDPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51374">
        <property type="entry name" value="NDPK_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 9 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Nucleoside diphosphate kinase-like" evidence="10">
        <location>
            <begin position="3"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="183" mass="20361" checksum="DD34F881CA7AAC77" modified="2008-05-20" version="1">MPVEKTLVILKPDAVSRGLVGEIITRFEKAGLKIVAMKMVRATPEQMERFYPSSEDWYRSAGSKLLKAYQEIGVDPRLRIGTDDPAEAGRLIKGRLVKYMTSGPIVVLVLKGNRAVEVVRKLVGPTSPHAAPPGTIRGDYSIDSPDLAAEEDRVVYNLVHASDSPAEAEREIKFWFREEEILD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCS9</accession>
    <name>B1YCS9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">NADH dehydrogenase (Quinone)</fullName>
            <ecNumber evidence="8">1.6.5.11</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0653</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="1.6.5.11" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCS9"/>
    <dbReference type="STRING" id="444157.Tneu_0653"/>
    <dbReference type="KEGG" id="tne:Tneu_0653"/>
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        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007100_6_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
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        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003954">
        <property type="term" value="F:NADH dehydrogenase activity"/>
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        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015990">
        <property type="term" value="P:electron transport coupled proton transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.2700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003945">
        <property type="entry name" value="NU5C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001516">
        <property type="entry name" value="Proton_antipo_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42829">
        <property type="entry name" value="NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42829:SF2">
        <property type="entry name" value="NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00662">
        <property type="entry name" value="Proton_antipo_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01434">
        <property type="entry name" value="NADHDHGNASE5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="100"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="126"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="184"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="212"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="250"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="280"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="308"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="343"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="388"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="422"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="464"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="493"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="533"/>
            <end position="558"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="593"/>
            <end position="610"/>
        </location>
    </feature>
    <feature type="domain" description="NADH-Ubiquinone oxidoreductase (complex I) chain 5 N-terminal" evidence="7">
        <location>
            <begin position="61"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="NADH:quinone oxidoreductase/Mrp antiporter transmembrane" evidence="6">
        <location>
            <begin position="167"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="611" mass="65663" checksum="B3671792F03E32F6" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCU5</accession>
    <name>B1YCU5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Bifunctional phosphoglucose/phosphomannose isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0669</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PGI/PMI family.</text>
    </comment>
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        <property type="protein sequence ID" value="ACB39608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCU5"/>
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    <dbReference type="KEGG" id="tne:Tneu_0669"/>
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    </dbReference>
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        <property type="component" value="Chromosome"/>
    </dbReference>
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        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="term" value="F:glucose-6-phosphate isomerase activity"/>
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        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="term" value="F:mannose-6-phosphate isomerase activity"/>
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        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
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        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="entry name" value="SIS_PGI_PMI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10490">
        <property type="entry name" value="Glucose-6-phosphate isomerase like protein, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019490">
        <property type="entry name" value="Glu6P/Mann6P_isomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="bact-PGI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SIS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SIS" evidence="3">
        <location>
            <begin position="27"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="300" mass="33352" checksum="D1630E4B2E0ACEF8" modified="2008-05-20" version="1">MLEDYLNWERYLLTEVDVPRRYTVDGAEVEIQPAPRLYISGMGGSGVVGDLLRDLSLVWNWDFEVVVVKDYFLRARDGLLIAVSYSGNTVETLHTVEYAKKRRMPTIAITTGGRLAQAGVPAIIVPKASAPRAALPQLFTAALHVIRHIYGVDVDVPSSLGPVDQTLVENLARDFQSRPTVVAPESMRGVAYRVKNEFNENSKIEPSVEILPEAHHNWIEGAERPVVALTSPHIPPEHRERVEATLEIVGGVKYTVEMRPRGILAFLREVGVASIKLAESRGVDPLATPRIDALKRRLQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCZ4</accession>
    <name>B1YCZ4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0718</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350077.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCZ4"/>
    <dbReference type="STRING" id="444157.Tneu_0718"/>
    <dbReference type="GeneID" id="6165640"/>
    <dbReference type="KEGG" id="tne:Tneu_0718"/>
    <dbReference type="eggNOG" id="arCOG00503">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1514675_0_0_2"/>
    <dbReference type="OrthoDB" id="25394at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="190" mass="20687" checksum="22653531820B4D77" modified="2008-05-20" version="1">MVKIAAVCSDFPGSLEPSHGFGLLINDVLLFDSCSREAASAFLSRYPSRPLLGVAGVPGSSHHAGGFDLFNVPVVKPSGDLRLRVRGVEYSLFWERWESVLYVDNVLITPCGLYTLPNHKLSRRGLKARCVVGGLGGTAINPYVQHRVVAELRLLGARCLVVTHTAPQFVKELERKFNVFKIGAGSVVEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD03</accession>
    <name>B1YD03_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glycoside hydrolase family 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0727</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the glycosyl hydrolase 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350086.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD03"/>
    <dbReference type="STRING" id="444157.Tneu_0727"/>
    <dbReference type="CAZy" id="GH1">
        <property type="family name" value="Glycoside Hydrolase Family 1"/>
    </dbReference>
    <dbReference type="GeneID" id="6166269"/>
    <dbReference type="KEGG" id="tne:Tneu_0727"/>
    <dbReference type="eggNOG" id="arCOG05412">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_777595_0_0_2"/>
    <dbReference type="OrthoDB" id="84443at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008422">
        <property type="term" value="F:beta-glucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.80">
        <property type="entry name" value="Glycosidases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="GH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001360">
        <property type="entry name" value="Glyco_hydro_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10353:SF209">
        <property type="entry name" value="GALACTOLIPID GALACTOSYLTRANSFERASE SFR2, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10353">
        <property type="entry name" value="GLYCOSYL HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00232">
        <property type="entry name" value="Glyco_hydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="(Trans)glycosidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="357" mass="41845" checksum="2BFFA81E00BE69ED" modified="2008-05-20" version="1">MQIGAAVSPYQHFGFCRCDLPDEPGAHHLLFYEEDLDLARRLGLDAFRTGVEWALVETREGEYNRESIRLFSDYLASIKRRGLKTWVSLHHFTNPRWVWKHGGWESRHVARRFVQYVELVARELGGLIDVALLFNEPNMYTFLAYIRGDLPPYGFLSPRHMRRALENIKRAILEARDVVKSYGVAVSFTHSYTKIESRNIVFKAVSFFLNRQHIEYMQMFKEMDYTSLNYYVVGRYEDLALRFIYRPAALLEVKSPTPLAVTEFGIATRDERTRYSYLCAMAHVLKRAKPVAAIWWSFLHGYEWGLGYQPFFALVDVVGTRRVPTELAKKFRQTLENPPECPLEERNAGLEWRWEPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD19</accession>
    <name>B1YD19_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 10">A-type ATP synthase subunit I</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0743</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Component of the A-type ATP synthase that produces ATP from ADP in the presence of a proton gradient across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the V-ATPase 116 kDa subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350102.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD19"/>
    <dbReference type="STRING" id="444157.Tneu_0743"/>
    <dbReference type="GeneID" id="6165126"/>
    <dbReference type="KEGG" id="tne:Tneu_0743"/>
    <dbReference type="eggNOG" id="arCOG04138">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020397_0_0_2"/>
    <dbReference type="OrthoDB" id="85892at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033179">
        <property type="term" value="C:proton-transporting V-type ATPase, V0 domain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016471">
        <property type="term" value="C:vacuolar proton-transporting V-type ATPase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051117">
        <property type="term" value="F:ATPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007035">
        <property type="term" value="P:vacuolar acidification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002490">
        <property type="entry name" value="V-ATPase_116kDa_su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11629:SF63">
        <property type="entry name" value="V-TYPE PROTON ATPASE SUBUNIT A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11629">
        <property type="entry name" value="VACUOLAR PROTON ATPASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01496">
        <property type="entry name" value="V_ATPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6 10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="467"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="508"/>
            <end position="527"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="562"/>
            <end position="582"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="594"/>
            <end position="616"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="636"/>
            <end position="654"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="675"/>
            <end position="702"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="708"/>
            <end position="730"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="11">
        <location>
            <begin position="247"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="11">
        <location>
            <begin position="344"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00059506"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00068671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU361189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="766" mass="86320" checksum="4299F7272D92F2FD" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD55</accession>
    <name>B1YD55_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid permease-associated region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0779</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350138.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD55"/>
    <dbReference type="STRING" id="444157.Tneu_0779"/>
    <dbReference type="GeneID" id="6164673"/>
    <dbReference type="KEGG" id="tne:Tneu_0779"/>
    <dbReference type="eggNOG" id="arCOG00009">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007946_15_12_2"/>
    <dbReference type="OrthoDB" id="43026at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1740.10">
        <property type="entry name" value="Amino acid/polyamine transporter I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050367">
        <property type="entry name" value="APC_superfamily"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42770">
        <property type="entry name" value="AMINO ACID TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42770:SF11">
        <property type="entry name" value="INNER MEMBRANE TRANSPORT PROTEIN YBAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006060">
        <property type="entry name" value="AA_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="28"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="82"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="113"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="188"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="222"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="272"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="319"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="344"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="384"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="407"/>
            <end position="424"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="427" mass="46138" checksum="790CE24EC6F52777" modified="2008-05-20" version="1">MAFREWLRRRLGTWDIYALVHHDSQSTFYLMAGFILLAAGQYGLFVMLYSAALLIAVALAYGEMGSRFPETGGSYLHVKIGLGNLGAFTAVWLLAIDQIIMVGYGTLDASKYILAYSGLAIPPQALAIALSTALYILALVGIKESSRVGLAVFTAEAAVMTALLAAVFTKFGAPPPYFSWRGVEPQNLLYAFSLASRGYTGIDAIGQLAGEATAPLIQIPRAAAIAAAVGTTYGLLLSSAIMSALTPAEIKDPALVMLQLAQKVAPPMETPVFAVIVMIMLMAALTGYVAFARLIYILADEKLLPPHFAKLHRRFRTPYVGLTFTYVVSILFLLPGEIELLVDIYAVGSLINYLMIALSLGLVTKRGILHSAFRSPRIRGFPTTSIAATALTATGIAFTAIEKLPYLWFLALWLAFGYLLYAATRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD63</accession>
    <name>B1YD63_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">3-phosphoshikimate 1-carboxyvinyltransferase</fullName>
            <ecNumber evidence="3">2.5.1.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0787</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21256"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57701"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
            <dbReference type="EC" id="2.5.1.19"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="7">
            <dbReference type="Rhea" id="RHEA:21257"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 6/7.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the EPSP synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.19" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350146.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD63"/>
    <dbReference type="STRING" id="444157.Tneu_0787"/>
    <dbReference type="GeneID" id="6164314"/>
    <dbReference type="KEGG" id="tne:Tneu_0787"/>
    <dbReference type="eggNOG" id="arCOG04134">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024321_0_0_2"/>
    <dbReference type="OrthoDB" id="43788at2157"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003866">
        <property type="term" value="F:3-phosphoshikimate 1-carboxyvinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="entry name" value="Enolpyruvate transferase domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006264">
        <property type="entry name" value="EPSP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023193">
        <property type="entry name" value="EPSP_synthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21090">
        <property type="entry name" value="AROM/DEHYDROQUINATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21090:SF5">
        <property type="entry name" value="PENTAFUNCTIONAL AROM POLYPEPTIDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000505">
        <property type="entry name" value="EPSPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="EPT/RTPC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00885">
        <property type="entry name" value="EPSP_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Enolpyruvate transferase" evidence="8">
        <location>
            <begin position="7"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00044633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="399" mass="42917" checksum="919484B458B5E007" modified="2008-05-20" version="1">MFCVRAGRLEGRFAAPPSKPYSQRLLLASALAEGETVIRGVEWSDDFTAMFRAVQPLARLYCEGGVVKASGREPDFYRSFNVMESGFTLRTAVAVYAGVPGVTSVYYGGTLRGRPIDELVEALRRLTTVEKTAGAIVVEGRRLGELDVEIRADVSSQYISGLMYLAAHVGRGVVRPVGERKSWSFVEATAEVLRKFGARVELGEAIEVEGPLRSPGAVDVPSDFSLAAFLVVAGVATGGRVELLGTLAEVDRWAIDVFRQMGADVTVDNGVVKASGAFTKGVDVDLGRNPDLVMPVALAAATVEAESVIRGVEHLRYKESDRVATVLDVLRRLGVEARYDKGAIYIRGPPTRREVAFQTHGDHRIGLMALAAAKIVGGCVDDLTPVAKSWPSAVLYFKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD79</accession>
    <name>B1YD79_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0803</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350162.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD79"/>
    <dbReference type="STRING" id="444157.Tneu_0803"/>
    <dbReference type="GeneID" id="6164477"/>
    <dbReference type="KEGG" id="tne:Tneu_0803"/>
    <dbReference type="eggNOG" id="arCOG07039">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1870816_0_0_2"/>
    <dbReference type="OrthoDB" id="28622at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="133" mass="14576" checksum="698EE2446A82714B" modified="2008-05-20" version="1">MNWVALLVGVAAGMAVAFGRVYAERAVARHFGLVPQLLFKHRDVLVPFLVLATAANIYAVWITVAYGGISAWRLSALVGMGLLVAAQMMQLHIALRPSRHDLQLALLSCAPYVYLFALYIAALATGRYSLWLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDD1</accession>
    <name>B1YDD1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">KEOPS complex Pcc1-like subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0857</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350214.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDD1"/>
    <dbReference type="STRING" id="444157.Tneu_0857"/>
    <dbReference type="GeneID" id="6164635"/>
    <dbReference type="KEGG" id="tne:Tneu_0857"/>
    <dbReference type="eggNOG" id="arCOG01354">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_191159_0_0_2"/>
    <dbReference type="OrthoDB" id="27208at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF011470">
        <property type="entry name" value="PRK14887.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="79" mass="9118" checksum="05B268C45200BBF5" modified="2008-05-20" version="1">MKRVLCRLETPLDCRYADALRPDDVDLPRGMEIRHLCAGGRWTVEVAYVVEKPEDVLTLKNTLDEVVRALQLIERSIPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="36" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDE2</accession>
    <name>B1YDE2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0868</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDE2"/>
    <dbReference type="KEGG" id="tne:Tneu_0868"/>
    <dbReference type="eggNOG" id="arCOG10105">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_929438_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="299" mass="34542" checksum="B7E35007DE5024CB" modified="2008-05-20" version="1">MGERHELKLIHYPLSDGDLYLFTRADDAVTLLSLFDNQGAGDLLREWTPELAPVWDRLEELARETRVEYSEEDMKFFEAAGIRIGRGPGFRFGPVITPKGRISIPDNIINALYERLNEERLNHNVSAGLRWWLGCVADLGCIGFATTSQVIHGCRMRGLRLGEEWINWLSEALRERNLYLSLSLPGSYCQCVLMEINDLNNVPSNLTEAVEFADEHYRPGERRGRCVCVDNSCRETEPDLRRLEELLDVYLRRLHRAIWRGLAVVERGVRAWEESSMLKATTEELKKIVDEIYDNLQFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDE8</accession>
    <name>B1YDE8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0874</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350231.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDE8"/>
    <dbReference type="STRING" id="444157.Tneu_0874"/>
    <dbReference type="GeneID" id="6165138"/>
    <dbReference type="KEGG" id="tne:Tneu_0874"/>
    <dbReference type="eggNOG" id="arCOG05694">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2340300_0_0_2"/>
    <dbReference type="OrthoDB" id="29274at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="96" mass="10463" checksum="6AE2372F97532446" modified="2008-05-20" version="1">MFGLVALTVVAVVAALALRRVRDRALTGLAVAGLVLLAVPAVLVNGDAAERLVAAVYMYAPYWEYLVPVAFFTLTLLPRRRQGGRKKRTRPEIVTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDI2</accession>
    <name>B1YDI2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphoesterase</fullName>
            <ecNumber evidence="1">3.1.4.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0908</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallophosphoesterase superfamily. YfcE family.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.-" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDI2"/>
    <dbReference type="STRING" id="444157.Tneu_0908"/>
    <dbReference type="KEGG" id="tne:Tneu_0908"/>
    <dbReference type="eggNOG" id="arCOG01141">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063749_4_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00841">
        <property type="entry name" value="MPP_YfcE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024654">
        <property type="entry name" value="Calcineurin-like_PHP_lpxH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053193">
        <property type="entry name" value="MetalloPDE_YfcE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041802">
        <property type="entry name" value="MPP_YfcE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000979">
        <property type="entry name" value="Phosphodiesterase_MJ0936/Vps29"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00040">
        <property type="entry name" value="yfcE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43165">
        <property type="entry name" value="METALLOPHOSPHOESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43165:SF1">
        <property type="entry name" value="PHOSPHODIESTERASE MJ0936"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12850">
        <property type="entry name" value="Metallophos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Calcineurin-like phosphoesterase" evidence="2">
        <location>
            <begin position="8"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU362039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="175" mass="19004" checksum="1AC833567A14D8A5" modified="2008-05-20" version="1">MGAPDRRMLLGVMSDSHDNVWAIRRAAEELKRRGVGLVLHAGDWVAPFSARALREALGEGIRVVGVWGNNEGERPYFLEMARKYGVEIAGEAAELEAGGRRIALYHGTSPVLLRALVESGLYDLVVYGHTHQAAIERRGRTLVVNPGEVCGCLTGRSTAAVVDLAKLEAELLFLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDI6</accession>
    <name>B1YDI6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0237 protein Tneu_0912</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0912</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0237 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350269.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDI6"/>
    <dbReference type="STRING" id="444157.Tneu_0912"/>
    <dbReference type="GeneID" id="6164290"/>
    <dbReference type="KEGG" id="tne:Tneu_0912"/>
    <dbReference type="eggNOG" id="arCOG04941">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_155669_0_1_2"/>
    <dbReference type="OrthoDB" id="27277at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01054">
        <property type="entry name" value="UPF0237"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050990">
        <property type="entry name" value="UPF0237/GcvR_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022986">
        <property type="entry name" value="UPF0237_ACT"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001220">
        <property type="entry name" value="PRK00194.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34875">
        <property type="entry name" value="UPF0237 PROTEIN MJ1558"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34875:SF6">
        <property type="entry name" value="UPF0237 PROTEIN MJ1558"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13740">
        <property type="entry name" value="ACT_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="ACT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="2">
        <location>
            <begin position="5"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="90" mass="10013" checksum="E6DBA710396C2126" modified="2008-05-20" version="1">MELAVVSVLGADRVGIVAGIAGVLARHNVNIVDISQTVVRDIFSMVMVVDMSKADVDIAQLRRELEEEGRRLGVMVGVYHIDVFRYMQRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDJ5</accession>
    <name>B1YDJ5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD-dependent epimerase/dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0921</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350278.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDJ5"/>
    <dbReference type="STRING" id="444157.Tneu_0921"/>
    <dbReference type="GeneID" id="6164520"/>
    <dbReference type="KEGG" id="tne:Tneu_0921"/>
    <dbReference type="eggNOG" id="arCOG03016">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_870449_0_0_2"/>
    <dbReference type="OrthoDB" id="213145at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044877">
        <property type="term" value="F:protein-containing complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051207">
        <property type="entry name" value="ComplexI_NDUFA9_subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12126:SF11">
        <property type="entry name" value="NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 9, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12126">
        <property type="entry name" value="NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD-dependent epimerase/dehydratase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="300" mass="33364" checksum="E2C264F9EC22B0DB" modified="2008-05-20" version="1">MRILLFGGLGFIGANLAEALSEHELYVAHRPGSPQAKPRLARFVARYATLLEYRDPATALERASPHVVINLVGEYFGGPQELWRANAEFPRLLCDAARRAGWRGKVVHFSAATVRGPVGAVIEEEEPHLHGVAPDNDFDRSKAAGEEAVARCFDDWVIIRPVLVYGRFNTHPEWLTLTRLVERGFAPMLKARVSAISARELAKVVKASLALTRQHLFATECHPRPLSDFVKAIAKALGKRPLPIPVPVALLRLAAPPDLRRHLPYLDKAFSCGKMRRLLGIEPRPDFEAEVKEMVESIKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDJ8</accession>
    <name>B1YDJ8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Band 7 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0924</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350281.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDJ8"/>
    <dbReference type="STRING" id="444157.Tneu_0924"/>
    <dbReference type="GeneID" id="6164349"/>
    <dbReference type="KEGG" id="tne:Tneu_0924"/>
    <dbReference type="eggNOG" id="arCOG01917">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037108_1_0_2"/>
    <dbReference type="OrthoDB" id="53394at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03408">
        <property type="entry name" value="SPFH_like_u1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1060.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="entry name" value="Band 7 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025874">
        <property type="entry name" value="DZR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038587">
        <property type="entry name" value="Ribosomal_eL40_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033880">
        <property type="entry name" value="SPFH_YdjI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001876">
        <property type="entry name" value="Znf_RanBP2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37826">
        <property type="entry name" value="FLOTILLIN BAND_7_5 DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37826:SF2">
        <property type="entry name" value="ZINC-RIBBON DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13421">
        <property type="entry name" value="Band_7_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12773">
        <property type="entry name" value="DZR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00547">
        <property type="entry name" value="ZnF_RBZ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="Band 7/SPFH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RanBP2-type" evidence="4">
        <location>
            <begin position="273"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="RanBP2-type" evidence="4">
        <location>
            <begin position="302"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="323" mass="35967" checksum="09AD1A8A0A4A4B79" modified="2008-05-20" version="1">MPQVIQWVSPKEGEIIWRYPVDRIEWGAQLIVEEWQAAVFMRDGKVYDVFRAGRHTLTTLNLPLLTQALSRIAGFDKSPFVAVVIYVSLKQHQLPFGGRGQTAELAPIQFYGSAWFRVADPALFVTQVVGGQNIYTTEDLQRFLRGYFNELLMAELSRQSIFTIYGNLDQVSFIAKNAIDPHFRRLGLELVDVRFEGLDVTDQVWRDRLFFIRATGVNPAEYLRMETVQKAAAELGKSPGAAAGTGIVLIPPLLWPQQQAAPPPQPAQPAAQQGVVCPQCGYVNPPGAKYCINCGYMLGKRCPQCGFVNPPDAKFCMNCGAKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDL0</accession>
    <name>B1YDL0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0936</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350293.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDL0"/>
    <dbReference type="STRING" id="444157.Tneu_0936"/>
    <dbReference type="GeneID" id="6164641"/>
    <dbReference type="KEGG" id="tne:Tneu_0936"/>
    <dbReference type="eggNOG" id="arCOG02090">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_392151_0_0_2"/>
    <dbReference type="OrthoDB" id="28532at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35902:SF6">
        <property type="entry name" value="CONSERVED WITHIN P. AEROPHILUM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35902">
        <property type="entry name" value="S-LAYER DOMAIN-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="663"/>
            <end position="682"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="690" mass="70955" checksum="82822EB56138D8FE" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDM0</accession>
    <name>B1YDM0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0948</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350303.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDM0"/>
    <dbReference type="STRING" id="444157.Tneu_0948"/>
    <dbReference type="GeneID" id="80457824"/>
    <dbReference type="KEGG" id="tne:Tneu_0948"/>
    <dbReference type="eggNOG" id="arCOG06979">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_208835_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="44" mass="5045" checksum="F27E1BCB3EC127FA" modified="2008-05-20" version="1">MSKELAKRLRDVVDLLESAVDEGDCRLAEEALDELRNIVEELEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="40" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDN3</accession>
    <name>B1YDN3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0961</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350316.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDN3"/>
    <dbReference type="GeneID" id="6164436"/>
    <dbReference type="KEGG" id="tne:Tneu_0961"/>
    <dbReference type="eggNOG" id="arCOG05421">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1987701_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="121" mass="13954" checksum="9FCCBB07C43F4337" modified="2008-05-20" version="1">MYLYFGRVRVGPLVGYLWLLGRRLYLRVGWRPRDTVYLGSVDDLLGVAVRVRWLVPRPLPVRHLVAALVDALKKAYYVASRYRDSPRWKIRAWEAAMAIEYAASALAMYWPSAAKKILDDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDP1</accession>
    <name>B1YDP1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0969</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350324.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDP1"/>
    <dbReference type="STRING" id="444157.Tneu_0969"/>
    <dbReference type="GeneID" id="6164282"/>
    <dbReference type="KEGG" id="tne:Tneu_0969"/>
    <dbReference type="eggNOG" id="arCOG00938">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009273_4_0_2"/>
    <dbReference type="OrthoDB" id="30736at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006783">
        <property type="term" value="P:heme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd21123">
        <property type="entry name" value="SPASM_MftC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.70:FF:000325">
        <property type="entry name" value="Radical SAM domain protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034391">
        <property type="entry name" value="AdoMet-like_SPASM_containing"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017200">
        <property type="entry name" value="PqqE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050377">
        <property type="entry name" value="Radical_SAM_PqqE_MftC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR04085">
        <property type="entry name" value="rSAM_more_4Fe4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11228:SF7">
        <property type="entry name" value="PQQA PEPTIDE CYCLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11228">
        <property type="entry name" value="RADICAL SAM DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037420">
        <property type="entry name" value="PQQ_syn_pqqE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01387">
        <property type="entry name" value="BtrN-like_SPASM_domain_contain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01386">
        <property type="entry name" value="main_SPASM_domain-containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01067">
        <property type="entry name" value="SPASM/twitch_domain_containing"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="32"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="377" mass="41715" checksum="45E35128AA00A3EE" modified="2008-05-20" version="1">MIPISVMVAGVGTTSFKVKGRFGVDKPSDFSAPLRPIVSWNITRRCNLKCLHCYIDAGAEDPRELTTAEALALVDQMAEVGVPLILFTGGEPLVRRDFFEIAERARDAGIKLVLSTNGTLITPEVARRLREVGVVYVGVSLDSIDPAFHDQFRGVPGSFAAALAGIKNATAAGLDVGLRFTVTAKNIREAGAYVDFAASLGVKRITFYHLSAAGRAQKLPPDWWYTPQQYREFIETLISKARQYAGRLEIETTLAPYDGIYIAQTVGGGDERHLKFVESTGGCGRKIISIYPNGDVYPCQFIDFYKLGNVREKPLREILTPDKLEPFINTDRYLRGPRCSACRFKQYCKGGDRARAYYLTGDMYGDDPLCPIPHLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDV2</accession>
    <name>B1YDV2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC-2 type transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1034</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350385.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDV2"/>
    <dbReference type="STRING" id="444157.Tneu_1034"/>
    <dbReference type="GeneID" id="6164980"/>
    <dbReference type="KEGG" id="tne:Tneu_1034"/>
    <dbReference type="eggNOG" id="arCOG01467">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039483_2_3_2"/>
    <dbReference type="OrthoDB" id="147058at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC2_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047817">
        <property type="entry name" value="ABC2_TM_bact-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051784">
        <property type="entry name" value="Nod_factor_ABC_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43229">
        <property type="entry name" value="NODULATION PROTEIN J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43229:SF2">
        <property type="entry name" value="NODULATION PROTEIN J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006648">
        <property type="entry name" value="DrrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="58"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="105"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="142"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="174"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="230"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-2" evidence="6">
        <location>
            <begin position="21"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="256" mass="27495" checksum="948DD1B30DED6167" modified="2008-05-20" version="1">MISPLYALYKREVLRLLRSRYMWLMVAAQPILWVVFFGNSLAGLPRGFLAQYFGVENYLAYMIPGMASIVMLTTGMFASMSLVFDKRVGYLRRVLVTPTPKTAVFLAKALGAATRGLLTIPVILAVGAAFGVRYNINPAALALWAAALAAAGMGFAALFTALSVNTTDVHAPGVISNFITMPLMFTSSALFPRQFFPDWLKAISEVNPLTYLTELGREALVYGAPPSPTAALATAAFAAATLTAGVIAVEKWLNAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDY8</accession>
    <name>B1YDY8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1070</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350420.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDY8"/>
    <dbReference type="STRING" id="444157.Tneu_1070"/>
    <dbReference type="GeneID" id="6165043"/>
    <dbReference type="KEGG" id="tne:Tneu_1070"/>
    <dbReference type="eggNOG" id="arCOG09849">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_856902_0_0_2"/>
    <dbReference type="OrthoDB" id="26471at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="332" mass="37747" checksum="2F38E28C260EF52F" modified="2008-05-20" version="1">MLPLHVKGAGVRNLLRHFPPLAYLVLVEFEGGDASDEAEAMGLPRELGSYVRQAVERLERELLAEVLSRLSQDQQFLNGLHQWISQAVIGREELWGPASLYIKHLYWEAEEGPYSRCMEAEELEAYLAMAQGRPEQLRAAGLVYWRYDPTLSRHLYCSPRWYSAVFQRISAAVREELGGEAYAYVMSFVERLFWNPRGYAYFRSAVFKDTPVVPYDEFVGDAATLPGVFDGRRLNPTYREAAKKAIFQVERIDAAAQLDEEFGVYVDGGEVVAPTVEAVGHKMLAKYRGKRVVALAKFDIEIPKLKPKLEIYGVEIKPRRHYLKTTAPSEPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDZ3</accession>
    <name>B1YDZ3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1075</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350425.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDZ3"/>
    <dbReference type="STRING" id="444157.Tneu_1075"/>
    <dbReference type="GeneID" id="6166220"/>
    <dbReference type="KEGG" id="tne:Tneu_1075"/>
    <dbReference type="eggNOG" id="arCOG02792">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055959_0_0_2"/>
    <dbReference type="OrthoDB" id="117970at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005351">
        <property type="term" value="F:carbohydrate:proton symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050360">
        <property type="entry name" value="MFS_Sugar_Transporters"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48022">
        <property type="entry name" value="PLASTIDIC GLUCOSE TRANSPORTER 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48022:SF2">
        <property type="entry name" value="PLASTIDIC GLUCOSE TRANSPORTER 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="73"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="99"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="135"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="169"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="233"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="266"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="295"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="321"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="355"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="380"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily (MFS) profile" evidence="7">
        <location>
            <begin position="1"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="417" mass="43423" checksum="5E1D2D69AD4BF64C" modified="2008-05-20" version="1">MAEWKRVHWTLFSIVSASFFLDGVLFSLVPTTIYLTDLAQQAPLIFAVNSLAFMLGAFLLGRLGDAVGRRLGLVVSLAVYTAGALWFAAAFWAGGLDLASALLSTSVINFGVGGEVGPAYAALAEFSPPRRRGAALMLSANFWNIGAAAIAVASLYYTALAADPKTAVFYTFLTAVALAAVVLLARLHIPESPRWLLARGRVDDARALAERYGVPLPRAQPASSSLRGYWGRVAVLAAAFTAQLLTYNIAAYYLPYAPGFAYGADAAAVNIAVANAGAAAGAFLLLPLIDRSRRASFLAAFLGGLATAAALAAAHGAPASLYLAVLFVNLVFSEWAWAAVSVLESELFPTAVRSTAVGVVTAAAWLINAGAVFTEGALGAGAFFALLVALWAAGAAAAAYWHRRGVESAARELEELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDZ5</accession>
    <name>B1YDZ5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1077</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDZ5"/>
    <dbReference type="STRING" id="444157.Tneu_1077"/>
    <dbReference type="KEGG" id="tne:Tneu_1077"/>
    <dbReference type="eggNOG" id="arCOG01348">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008831_0_2_2"/>
    <dbReference type="OrthoDB" id="350804at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019674">
        <property type="term" value="P:NAD+ metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006741">
        <property type="term" value="P:NADP+ biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10330">
        <property type="entry name" value="Probable inorganic polyphosphate/atp-NAD kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.30">
        <property type="entry name" value="Probable inorganic polyphosphate/atp-NAD kinase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017438">
        <property type="entry name" value="ATP-NAD_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017437">
        <property type="entry name" value="ATP-NAD_kinase_PpnK-typ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20275">
        <property type="entry name" value="NAD KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20275:SF0">
        <property type="entry name" value="NAD KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12840">
        <property type="entry name" value="HTH_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20143">
        <property type="entry name" value="NAD_kinase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="NAD kinase/diacylglycerol kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="293" mass="31672" checksum="868A4BC68FABA927" modified="2008-05-20" version="1">MRIVEVEAEDAVLAEALRRHGVEVRRGAPVVAVYGRDRDILRALRSEERPVLGVSPPGVDARLAALELREVPLLPDLALEVVDVVRVEAESGGQRVVAINEVALLAAEPASFVRYSLYVDGAFVFNDLGDGCLVSTPVGSTAYALSAGGAVVSPRADVLEVVPVNSALRRPPHVFPSDVRIELRDVRSRSDVYLIGDGAEKIRYRGYAAVAKAGTAKLVVRPQRPRAAPRLPPSVQLVKRVVEERGPLTASEVAALTGLSPRTVRYALEKLREAGLVRSTVDPTDPRRRIYMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE20</accession>
    <name>B1YE20_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1102</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350452.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE20"/>
    <dbReference type="STRING" id="444157.Tneu_1102"/>
    <dbReference type="GeneID" id="6165587"/>
    <dbReference type="KEGG" id="tne:Tneu_1102"/>
    <dbReference type="eggNOG" id="arCOG07430">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2257476_0_0_2"/>
    <dbReference type="OrthoDB" id="27938at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="27"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="69"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="103" mass="11113" checksum="E8B7AAE3F6042B42" modified="2008-05-20" version="1">MLASSLIIGAGVPVALFYIAYKTASWVFLAAAALLGALAIFWGAVMALAAFVPILDYVDALAEERGSRLNAYRALARSLLEELDEVNAVLKEIRDELKRLGET</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE37</accession>
    <name>B1YE37_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1119</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE37"/>
    <dbReference type="STRING" id="444157.Tneu_1119"/>
    <dbReference type="KEGG" id="tne:Tneu_1119"/>
    <dbReference type="eggNOG" id="arCOG09848">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1976621_0_0_2"/>
    <dbReference type="OrthoDB" id="374247at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="126" mass="13082" checksum="DA25A491970AB83E" modified="2008-05-20" version="1">MPNCNAACVRSSPIVCCMRYEGALSDAGCDVVCITLPIGAVYLVELKGGHLTIGDAKDALTQLEACEKLVGGRAQKIVAHSKKGGIDQQAVMTLKAAGVALLKLYDEGSARGDVARALLRALRALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8L0</accession>
    <name>B1Y8L0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1160</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350508.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8L0"/>
    <dbReference type="STRING" id="444157.Tneu_1160"/>
    <dbReference type="GeneID" id="58787338"/>
    <dbReference type="KEGG" id="tne:Tneu_1160"/>
    <dbReference type="eggNOG" id="arCOG11744">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_411984_0_0_2"/>
    <dbReference type="OrthoDB" id="29297at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="403"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="430"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="473"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="504"/>
            <end position="521"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="527"/>
            <end position="548"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="666" mass="71266" checksum="4FB4B529866CD4C1" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8L4</accession>
    <name>B1Y8L4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Vitamin K epoxide reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_1164</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the VKOR family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350512.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8L4"/>
    <dbReference type="STRING" id="444157.Tneu_1164"/>
    <dbReference type="GeneID" id="6166225"/>
    <dbReference type="KEGG" id="tne:Tneu_1164"/>
    <dbReference type="eggNOG" id="arCOG03749">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_141437_0_0_2"/>
    <dbReference type="OrthoDB" id="27520at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd12918">
        <property type="entry name" value="VKOR_arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.130">
        <property type="entry name" value="VKOR domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012932">
        <property type="entry name" value="VKOR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038354">
        <property type="entry name" value="VKOR_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF011478">
        <property type="entry name" value="PRK14889.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07884">
        <property type="entry name" value="VKOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00756">
        <property type="entry name" value="VKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-0874">Quinone</keyword>
    <keyword evidence="9" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="5"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="68"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="97"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="121"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="Vitamin K epoxide reductase" evidence="11">
        <location>
            <begin position="1"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB40093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="159" mass="17716" checksum="B1F6C2DBC618234A" modified="2008-05-20" version="1">MDRWLVLLVAFSAGGLAASLLVIYLFYLLGALPPGCYADVELLPGVTMDCVRVLTSRYAYIGPLPLDAAAAVWFVVNIGAALWLYRTLSRRAARFVFWWRLLGLAILPYLVYLEFAVLKAVCIYCTVMHIFIVADFVVITLFLRRVGPSIGKVDGRKPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8N9</accession>
    <name>B1Y8N9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Nuclease</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1190</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350537.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8N9"/>
    <dbReference type="STRING" id="444157.Tneu_1190"/>
    <dbReference type="GeneID" id="6165449"/>
    <dbReference type="KEGG" id="tne:Tneu_1190"/>
    <dbReference type="eggNOG" id="arCOG04356">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038336_0_0_2"/>
    <dbReference type="OrthoDB" id="57367at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.91.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008508">
        <property type="entry name" value="Bax1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39640:SF1">
        <property type="entry name" value="DUF790 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39640">
        <property type="entry name" value="VNG6129C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05626">
        <property type="entry name" value="DUF790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019435">
        <property type="entry name" value="UCP019435"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="377" mass="42806" checksum="76AB364B73453D2B" modified="2008-05-20" version="1">MIPLDYLRAVRRRGEVKPLYLSDESPAAAVLEAVRRSATLGEFRKAVEALGWDRKLAGGLAHIVEQLAKVEEVDTRLVAKVRLEVFKASAAAGYALAPEDRERVFQAAAAKLRMDVAEVKRLFSKAYEENRAILQPPDLTPGDLLRLYNLSLIQTLLFKSLWVRAKLPNDPPLVKTLVRAVKGLRLMYTAEEAGGQLALHFDGPASALRQTERYGTRLAKLVPYIAAASSWSLEAEVKLGDRIYHFRESSQTAPPLASKPPTADEFDSYVEQEFYRQVSRVCPVEREPEVLVVEGRVYIPDFKIGDLYIEVVGFWTPDYLRRKYEKVVKVGKPLLVLVDEELAMSTWKQLLPNVVLYKGRPRLEDVYRYIKPHCRRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8T1</accession>
    <name>B1Y8T1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1233</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350579.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8T1"/>
    <dbReference type="STRING" id="444157.Tneu_1233"/>
    <dbReference type="GeneID" id="6166053"/>
    <dbReference type="KEGG" id="tne:Tneu_1233"/>
    <dbReference type="eggNOG" id="arCOG02050">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045498_5_4_2"/>
    <dbReference type="OrthoDB" id="29217at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051598">
        <property type="entry name" value="TSUP/Inactive_protease-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43701">
        <property type="entry name" value="MEMBRANE TRANSPORTER PROTEIN MJ0441-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43701:SF2">
        <property type="entry name" value="MEMBRANE TRANSPORTER PROTEIN YJNA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="126"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="161"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="188"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="221"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="242" mass="25058" checksum="8FB734C219B883A8" modified="2008-05-20" version="1">MWAAALAGLLGGLLGPLIGVGGGVIVVPLLNLWGVPFQAAAAASMFSIVVSSATAVYNYRRAIDFKSLAGYAALSLAAAAVSAAFSVKYSGPWVKLAYGLYLVSVGSVLLKNVEPRRNAPWLGPPLVFIGGFASSLFGVGGGTVFVPTLMLTSGLDAKRAAAMSMGIIFPTAVSSVATYAALGVLDVSLAAATVAGSFVGSYISSRYIMGKLRRDAVRRLFVGYVYAVGVYYLWSYLALFLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8V3</accession>
    <name>B1Y8V3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Large ribosomal subunit protein eL19</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpl19e</name>
        <name evidence="9" type="ordered locus">Tneu_1255</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the eukaryotic ribosomal protein eL19 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350601.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8V3"/>
    <dbReference type="STRING" id="444157.Tneu_1255"/>
    <dbReference type="GeneID" id="6165845"/>
    <dbReference type="KEGG" id="tne:Tneu_1255"/>
    <dbReference type="eggNOG" id="arCOG04089">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083919_1_1_2"/>
    <dbReference type="OrthoDB" id="11624at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01418">
        <property type="entry name" value="Ribosomal_L19e_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1650.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01475">
        <property type="entry name" value="Ribosomal_eL19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035970">
        <property type="entry name" value="60S_ribosomal_eL19_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039547">
        <property type="entry name" value="Ribosomal_eL19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033936">
        <property type="entry name" value="Ribosomal_eL19_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000196">
        <property type="entry name" value="Ribosomal_eL19_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015972">
        <property type="entry name" value="Ribosomal_eL19_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057259">
        <property type="entry name" value="Ribosomal_L19e"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057260">
        <property type="entry name" value="Ribosomal_L19e_C"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006343">
        <property type="entry name" value="PRK08570.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10722">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01280">
        <property type="entry name" value="Ribosomal_L19e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25476">
        <property type="entry name" value="Ribosomal_L19e_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01416">
        <property type="entry name" value="Ribosomal_L19e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48140">
        <property type="entry name" value="Ribosomal protein L19 (L19e)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Large ribosomal subunit protein eL19" evidence="8">
        <location>
            <begin position="1"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="66"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="7">
        <location>
            <begin position="66"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM01416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="147" mass="17424" checksum="73B08D3BFEB5AA67" modified="2008-05-20" version="1">MVDVKRLAADILGVGVSRVKISPEAVEKLDEVVTKDDVRALIDQGLIWAEQERGVSRGRWRVRHVKKREGRRRGHGSRKGRRTDEEEVWKNKVRAMRRFLNTLKRSGRLEPRVWRQLYEMVKGNYFRDLGHLKTYINEHKLTKEPVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Y4</accession>
    <name>B1Y8Y4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF1614 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1286</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350632.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Y4"/>
    <dbReference type="STRING" id="444157.Tneu_1286"/>
    <dbReference type="GeneID" id="6165805"/>
    <dbReference type="KEGG" id="tne:Tneu_1286"/>
    <dbReference type="eggNOG" id="arCOG02159">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082100_1_0_2"/>
    <dbReference type="OrthoDB" id="46118at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011672">
        <property type="entry name" value="DUF1614"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07758">
        <property type="entry name" value="DUF1614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="160"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="204"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="230" mass="23559" checksum="66F21C9A51725793" modified="2008-05-20" version="1">MRVVVALPFHGVFGVIYAALAAALAPLSAAAMVDVLKATGIHPAAALLIAMSMTFFSLAASPINVVVYTVSRRHYIPVVDYVVVLGIPIPVPRVALHEEKSYIAVNVGGAVVPLAVATYLLAKIYSPHLVAAIAAASLLTYSVSRVIPSVGVVTPAFAPPIIAALSALIAGGGPAATYVTAVYGTIIGADLMNMRKILSHRPPLVSIGGAGVFDGIYLSGLLATLLSKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Z7</accession>
    <name>B1Y8Z7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative phage metallopeptidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1299</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350645.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Z7"/>
    <dbReference type="STRING" id="444157.Tneu_1299"/>
    <dbReference type="GeneID" id="6165637"/>
    <dbReference type="KEGG" id="tne:Tneu_1299"/>
    <dbReference type="eggNOG" id="arCOG04217">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_136010_0_0_2"/>
    <dbReference type="OrthoDB" id="26976at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043998">
        <property type="entry name" value="Put_Metallopep"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18894">
        <property type="entry name" value="PhageMetallopep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative phage metallopeptidase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="126" mass="14508" checksum="CB6DA46810EF6C42" modified="2008-05-20" version="1">MYRRLCDVEEDIRRAAARYGLRHLLGVEISVLYNPASRSRAVARIWGLGRIFQVAFGLRPGYVIELLPPFAQLGCEDRLRAVAHELAHVPDTASGSLRPHNKAFWRTYRSYLRLFKCDDFPSLTYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y951</accession>
    <name>B1Y951_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1354</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350699.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y951"/>
    <dbReference type="STRING" id="444157.Tneu_1354"/>
    <dbReference type="GeneID" id="6165038"/>
    <dbReference type="KEGG" id="tne:Tneu_1354"/>
    <dbReference type="eggNOG" id="arCOG03760">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1340774_0_0_2"/>
    <dbReference type="OrthoDB" id="28998at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="52"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="98"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="200" mass="22112" checksum="DBA7E3A8D3CCBD86" modified="2008-05-20" version="1">MLTELYKAGKVRQEALGVLAKSVICAKTGCLTSGPEAVFGNLALPLTESLTAAPRQKAPQQRRQTPKLAQPQPKRQEQKQQQPPEQRPAAVSQPPKPQETKVEEKREEASWGSLVALLAEEARVDRSKAEAVIDALMNYLSIYPSVGVIRLVEDVSRLAKVEHRAVRAALEILRSADVVELREEGVVNLRKLVRRGDIKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y952</accession>
    <name>B1Y952_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">FaeA family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1355</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350700.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y952"/>
    <dbReference type="STRING" id="444157.Tneu_1355"/>
    <dbReference type="GeneID" id="6164972"/>
    <dbReference type="KEGG" id="tne:Tneu_1355"/>
    <dbReference type="eggNOG" id="arCOG00741">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_183485_0_0_2"/>
    <dbReference type="OrthoDB" id="31063at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006793">
        <property type="entry name" value="FaeA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04703">
        <property type="entry name" value="FaeA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="3">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="74" mass="8855" checksum="E238C61F46187399" modified="2008-05-20" version="1">MPRRQTDKVFERKEQIIEYLKTYGELTTSRLIQLTGLSHSQIFYILKLLEKENVVKEVKRGKIAYWRLVEAKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y982</accession>
    <name>B1Y982_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1385</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350730.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y982"/>
    <dbReference type="STRING" id="444157.Tneu_1385"/>
    <dbReference type="GeneID" id="6165695"/>
    <dbReference type="KEGG" id="tne:Tneu_1385"/>
    <dbReference type="eggNOG" id="arCOG05570">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_803159_0_0_2"/>
    <dbReference type="OrthoDB" id="25947at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="307" mass="33912" checksum="370A64373E414715" modified="2008-05-20" version="1">MVDYVEVGVGDSKASARFTDVTFITGVGKSTFLDIINRVVSNIGKKVPKTSQSWSLYLQRGDVSYYISASKWRVRQIVSVKGEEVVFEYIPTKPIHRLLKPIEVALTSADVIIPMVETQEHVSVVAEEDIERVNGLLASARKSLGARVYMLGPYISPRSLVDASAVRVDKLDRHARNLAGVLSYLALHKPTAYDSIRASLRKLGLSVSVGLAKPGKIGVFVTSKNQKMPLSRAPCSVKYLLSIATALEMKPDILLIDNFDYCLTRKAAEVLSSLFKQKPSKIVAEIHNEDVADWLDLPNKSIVEVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y994</accession>
    <name>B1Y994_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Phosphomevalonate dehydratase large subunit</fullName>
            <ecNumber evidence="7">4.2.1.182</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1398</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Component of a hydro-lyase that catalyzes the dehydration of mevalonate 5-phosphate (MVA5P) to form trans-anhydromevalonate 5-phosphate (tAHMP). Involved in the archaeal mevalonate (MVA) pathway, which provides fundamental precursors for isoprenoid biosynthesis, such as isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>(R)-5-phosphomevalonate = (2E)-3-methyl-5-phosphooxypent-2-enoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:78975"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58146"/>
            <dbReference type="ChEBI" id="CHEBI:229665"/>
            <dbReference type="EC" id="4.2.1.182"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="3">
            <dbReference type="Rhea" id="RHEA:78976"/>
        </physiologicalReaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">Heterodimer composed of a large subunit (PMDh-L) and a small subunit (PMDh-S).</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the AcnX type II large subunit family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.182" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y994"/>
    <dbReference type="STRING" id="444157.Tneu_1398"/>
    <dbReference type="KEGG" id="tne:Tneu_1398"/>
    <dbReference type="eggNOG" id="arCOG04278">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018825_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007506">
        <property type="entry name" value="PMDh-L-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36577">
        <property type="entry name" value="DUF521 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_6G00490)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36577:SF3">
        <property type="entry name" value="DUF521 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_6G00490)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04412">
        <property type="entry name" value="AcnX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Phosphomevalonate dehydratase large subunit-like" evidence="9">
        <location>
            <begin position="9"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00045120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00045299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00046333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00046520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF04412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="380" mass="41410" checksum="5080F2FC4679D1DD" modified="2008-05-20" version="1">MGSGLVAVALEYAREAVLKIADAISEGEVVPVETAHVSGVSYITIGEHGIEFLEFLASSGAKVAVFTTSNPAAVDLGGVLEVDEKTLEGQRRIYKALLTMGVSTISSCTPYEFIMTRPRTFHAWAESNAITYINTFRDAWSDKNPGPLALLGAIAGYVPKTPLYTIEGRRPTAHVKIEVGPLDSLEAGVVGALIGERLGSGVPYLSGAVFRDEESRREFAAALSTYSSMVFAVVEGTTPHWREYLHMGDFRDRITISREDVAKYLGDVETPDAVYIGCPFADPDTVLWVLGEVKKRGPAKRPIYVSTSPHVYRQLGKLVEAASRLNVVIFAGTCLVVSPFTKRFKSIATDSLKAAFYIPRLHGVRVTPCRRERCIELAYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9B7</accession>
    <name>B1Y9B7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Small ribosomal subunit protein uS13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rps13</name>
        <name evidence="8" type="ordered locus">Tneu_1421</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uS13 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350765.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9B7"/>
    <dbReference type="STRING" id="444157.Tneu_1421"/>
    <dbReference type="GeneID" id="6164386"/>
    <dbReference type="KEGG" id="tne:Tneu_1421"/>
    <dbReference type="eggNOG" id="arCOG01722">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_103849_0_0_2"/>
    <dbReference type="OrthoDB" id="372127at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.50:FF:000001">
        <property type="entry name" value="30S ribosomal protein S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.910.10">
        <property type="entry name" value="30s ribosomal protein s13, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01315">
        <property type="entry name" value="Ribosomal_uS13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027437">
        <property type="entry name" value="Rbsml_uS13_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001892">
        <property type="entry name" value="Ribosomal_uS13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_uS13-like_H2TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019977">
        <property type="entry name" value="Ribosomal_uS13_archaeal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018269">
        <property type="entry name" value="Ribosomal_uS13_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003140">
        <property type="entry name" value="PRK04053.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03629">
        <property type="entry name" value="uS13_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10871">
        <property type="entry name" value="30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10871:SF3">
        <property type="entry name" value="SMALL RIBOSOMAL SUBUNIT PROTEIN US13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00416">
        <property type="entry name" value="Ribosomal_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002134">
        <property type="entry name" value="Ribosomal_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="S13-like H2TH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00646">
        <property type="entry name" value="RIBOSOMAL_S13_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50159">
        <property type="entry name" value="RIBOSOMAL_S13_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003830"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="153" mass="16729" checksum="A4E7A6F3C0085FA3" modified="2008-05-20" version="1">MSQEIRAIVRIGDTDLDGNKQVAYALAKIRGIGIATAYAICWKLGIDPHAVLGMLTDDQINKLDWAVRNLNELAPAWFLNRRKDPETGRELHLIGSELVLAAKKDVDLMKKLKSWKGVRHSLGLKVRGQRTVTTGRFGATAGVTKKKAAAGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9E0</accession>
    <name>B1Y9E0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">SMC domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1444</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350788.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9E0"/>
    <dbReference type="STRING" id="444157.Tneu_1444"/>
    <dbReference type="GeneID" id="6165055"/>
    <dbReference type="KEGG" id="tne:Tneu_1444"/>
    <dbReference type="eggNOG" id="arCOG00368">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004785_0_2_2"/>
    <dbReference type="OrthoDB" id="25344at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.510">
        <property type="entry name" value="Helix hairpin bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32114">
        <property type="entry name" value="ABC TRANSPORTER ABCH.3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32114:SF2">
        <property type="entry name" value="ABC TRANSPORTER ABCH.3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75712">
        <property type="entry name" value="Rad50 coiled-coil Zn hook"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RecF/RecN/SMC N-terminal" evidence="3">
        <location>
            <begin position="4"/>
            <end position="770"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="205"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="277"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="443"/>
            <end position="604"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="795" mass="90245" checksum="418063DA6E4BF6B7" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9L0</accession>
    <name>B1Y9L0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gamma-glutamyltransferase</fullName>
            <ecNumber evidence="1">2.3.2.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1515</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.3.2.2" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350858.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9L0"/>
    <dbReference type="STRING" id="444157.Tneu_1515"/>
    <dbReference type="GeneID" id="6165782"/>
    <dbReference type="KEGG" id="tne:Tneu_1515"/>
    <dbReference type="eggNOG" id="arCOG04053">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014813_3_3_2"/>
    <dbReference type="OrthoDB" id="183046at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103068">
        <property type="term" value="F:leukotriene C4 gamma-glutamyl transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.246.230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052896">
        <property type="entry name" value="GGT-like_enzyme"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043137">
        <property type="entry name" value="GGT_ssub_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43881">
        <property type="entry name" value="GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43881:SF1">
        <property type="entry name" value="GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01019">
        <property type="entry name" value="G_glu_transpept"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01210">
        <property type="entry name" value="GGTRANSPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="462" mass="50037" checksum="2C648EAD4AA1597F" modified="2008-05-20" version="1">MYAGTEFAIATESYLATRAGYEAYKAGGNAADAAACASIVLTYTLPHLGGVGGDFLALIHRGSGVEAVLGLGWAPRRVPEKPPRRGIQSAVVPGYLAGLYELHRRYGSLTWEKVVDIALGAMEKATLHPSLAYALEKYRDILLADPGGRIYLSLPGHAGEPYRIEPLLRLWRRLRDNPLSFYDEVAADLLHGYFEIDDFSRFRAEVRRPLSLAVGEWTVYEAPPPSLGFAVLLALKLTQRAEGAFSYARIRDVVSALKKAHWARDRYLHDGDVPIGDILEGRVELGEAESPEPTPGTTYLAAADRELVVSAIQSLYYPFGAGYTDAAWGVTFNNRASDFTAGLNRAAPHKRPAHTLSAVVLEGEGGVYALGASAGHYRPAIYVQLVQNIVWYGMDLRAAVWAPRFMWRGGDEVQAEEGWETGPGVQLVKYPSRMGVAAAAARKGPTVAAVADIRGDGLALGL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-01-20" modified="2026-01-28" version="92" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9N2</accession>
    <name>NTPTH_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nucleoside-triphosphatase THEP1</fullName>
            <shortName evidence="1">NTPase THEP1</shortName>
            <ecNumber evidence="1">3.6.1.15</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Nucleoside triphosphate phosphohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_1537</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a ribonucleoside 5'-triphosphate + H2O = a ribonucleoside 5'-diphosphate + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23680"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="EC" id="3.6.1.15"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the THEP1 NTPase family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.15" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350880.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9N2"/>
    <dbReference type="SMR" id="B1Y9N2"/>
    <dbReference type="STRING" id="444157.Tneu_1537"/>
    <dbReference type="GeneID" id="6165168"/>
    <dbReference type="KEGG" id="tne:Tneu_1537"/>
    <dbReference type="eggNOG" id="arCOG01034">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_103145_1_1_2"/>
    <dbReference type="OrthoDB" id="52698at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017111">
        <property type="term" value="F:ribonucleoside triphosphate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd19482">
        <property type="entry name" value="RecA-like_Thep1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00796">
        <property type="entry name" value="NTPase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004948">
        <property type="entry name" value="Nuc-triphosphatase_THEP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF010248">
        <property type="entry name" value="PRK13695.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43146">
        <property type="entry name" value="CANCER-RELATED NUCLEOSIDE-TRIPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43146:SF1">
        <property type="entry name" value="CANCER-RELATED NUCLEOSIDE-TRIPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03266">
        <property type="entry name" value="NTPase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00364">
        <property type="entry name" value="DISEASERSIST"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000360031" description="Nucleoside-triphosphatase THEP1">
        <location>
            <begin position="1"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="15"/>
            <end position="22"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="102"/>
            <end position="109"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00796"/>
        </source>
    </evidence>
    <sequence length="175" mass="19053" checksum="F3C2529BCF991497" modified="2008-05-20" version="1">MTSRERAESKVGITGMPGVGKTTLAMEVANLARRRMTVCGFITLEVREAGRRVGFDVYDISTGSRVPLARVGAGAVTVGKYVVDLSACDVIKRILDAASCDLLVVDEIGAMEVKCPNFLVSLEKAVKSSPRVLAVVHRNYLDVAKRLGIEVLWLSRENREAVREEVLRKLGLPLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9S6</accession>
    <name>B1Y9S6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Oligopeptide/dipeptide ABC transporter, ATPase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1552</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350895.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9S6"/>
    <dbReference type="STRING" id="444157.Tneu_1552"/>
    <dbReference type="GeneID" id="6166295"/>
    <dbReference type="KEGG" id="tne:Tneu_1552"/>
    <dbReference type="eggNOG" id="arCOG00184">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_23_2"/>
    <dbReference type="OrthoDB" id="18209at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd03257">
        <property type="entry name" value="ABC_NikE_OppD_transporters"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000016">
        <property type="entry name" value="Oligopeptide ABC transporter ATP-binding component"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050319">
        <property type="entry name" value="ABC_transp_ATP-bind"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43776:SF8">
        <property type="entry name" value="ABC TRANSPORTER, ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43776">
        <property type="entry name" value="TRANSPORT ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="4"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="324" mass="36485" checksum="04F88F1A51342FDB" modified="2008-05-20" version="1">MPLLEVQDLRTWFPVRRGLFGVRRFIKAVDGVSFTLESGEVLAVIGESGSGKTTLGRTVLRLVKPTAGRIVFDGRDITDVPESELRWYRFSTAMVFQDPFGSLNPYHTVQYILEEPLILRGVPPGERYELVVKALEEVKLTPPEDFLRKYPHMLSGGQRQRVGIARALITKPRFIVADEPVSMLDVSIRAEILSLMRSLQEKHGIAMMYITHDIATAKYIADKVLVMYAGKMVEYGPFREVVKNPSHPYTQALINALPDPDPNNRFKMREVPPGEPPSLLNPPSGCRFHPRCPYAIKGKCDAEEPPMSQVKKGHYVSCWYTGSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9V8</accession>
    <name>B1Y9V8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Probable branched-chain amino acid transport ATP-binding protein LivG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1584</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Probable component of a branched-chain amino-acid transport system.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350927.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9V8"/>
    <dbReference type="STRING" id="444157.Tneu_1584"/>
    <dbReference type="GeneID" id="6166043"/>
    <dbReference type="KEGG" id="tne:Tneu_1584"/>
    <dbReference type="eggNOG" id="arCOG00925">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="44250at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03219">
        <property type="entry name" value="ABC_Mj1267_LivG_branched"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000421">
        <property type="entry name" value="Branched-chain amino acid ABC transporter ATP-binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051120">
        <property type="entry name" value="ABC_AA/LPS_Transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45772:SF9">
        <property type="entry name" value="CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45772">
        <property type="entry name" value="CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="4"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00056071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00072811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="255" mass="28262" checksum="F8D7654A34949B45" modified="2008-05-20" version="1">MLILSAQGVVKKFGSFRALDGVDVEVERGKVTLIIGPNGSGKTTFVNVVTGVYKPDGGKLLYYTKEGKAVDITGLPSHKIFETGIVRTFQIPQVFQRLTVLENLLVVARGQRGEGLLPALARNWVREEEELARRAFRILKAVRLADKWDRPAYLLSAGEMKLLELARALMAGADLIILDEPIAGVPVDQAHEVFKTVRDINQSQSVTFLVIEHRIDIAFRYVDYVYAMASGRVIARGLPDEVASDPKVKEVYIGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9X4</accession>
    <name>B1Y9X4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1601</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350943.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9X4"/>
    <dbReference type="STRING" id="444157.Tneu_1601"/>
    <dbReference type="GeneID" id="6165994"/>
    <dbReference type="KEGG" id="tne:Tneu_1601"/>
    <dbReference type="eggNOG" id="arCOG00921">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_109226_0_0_2"/>
    <dbReference type="OrthoDB" id="26894at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022285">
        <property type="entry name" value="CHP03879_regulat_dom_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03879">
        <property type="entry name" value="near_KaiC_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40727:SF1">
        <property type="entry name" value="BACTERIO-OPSIN ACTIVATOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40727">
        <property type="entry name" value="TRANSCRIPTION REGULATOR, ENCODED NEXT TO RECA SUPERFAMILY ATPASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13384">
        <property type="entry name" value="HTH_23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="141" mass="15843" checksum="BA324F29285FA6C9" modified="2008-05-20" version="1">MAEIPLKPTGREEIRKLESALLVMSLFDKETLEAIKDPATRVTWVDSLYTAAAALARERAGISTSKIAEELGVTEATIRRHLKGETKAGQLVKKVYDKLSKEGFKVELPTELAEECTKQITELKDKIEKVKKMLTEIQSWL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Y4</accession>
    <name>SYS_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Serine--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Seryl-tRNA synthetase</fullName>
            <shortName evidence="1">SerRS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Seryl-tRNA(Ser/Sec) synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">serS</name>
        <name type="ordered locus">Tneu_1611</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>tRNA(Ser) + L-serine + ATP = L-seryl-tRNA(Ser) + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12292"/>
            <dbReference type="Rhea" id="RHEA-COMP:9669"/>
            <dbReference type="Rhea" id="RHEA-COMP:9703"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78533"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.11"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>tRNA(Sec) + L-serine + ATP = L-seryl-tRNA(Sec) + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:42580"/>
            <dbReference type="Rhea" id="RHEA-COMP:9742"/>
            <dbReference type="Rhea" id="RHEA-COMP:10128"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78533"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) biosynthesis; L-seryl-tRNA(Sec) from L-serine and tRNA(Sec): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer. The tRNA molecule binds across the dimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">Consists of two distinct domains, a catalytic core and a N-terminal extension that is involved in tRNA binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family. Type-1 seryl-tRNA synthetase subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.11" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350953.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Y4"/>
    <dbReference type="SMR" id="B1Y9Y4"/>
    <dbReference type="STRING" id="444157.Tneu_1611"/>
    <dbReference type="GeneID" id="6165856"/>
    <dbReference type="KEGG" id="tne:Tneu_1611"/>
    <dbReference type="eggNOG" id="arCOG00403">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023797_0_1_2"/>
    <dbReference type="OrthoDB" id="35932at2157"/>
    <dbReference type="UniPathway" id="UPA00906">
        <property type="reaction ID" value="UER00895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004828">
        <property type="term" value="F:serine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016260">
        <property type="term" value="P:selenocysteine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006434">
        <property type="term" value="P:seryl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00770">
        <property type="entry name" value="SerRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.40">
        <property type="entry name" value="Serine-tRNA synthetase, tRNA binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00176">
        <property type="entry name" value="Ser_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002317">
        <property type="entry name" value="Ser-tRNA-ligase_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015866">
        <property type="entry name" value="Ser-tRNA-synth_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042103">
        <property type="entry name" value="SerRS_1_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033729">
        <property type="entry name" value="SerRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010978">
        <property type="entry name" value="tRNA-bd_arm"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00414">
        <property type="entry name" value="serS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11778">
        <property type="entry name" value="SERYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02403">
        <property type="entry name" value="Seryl_tRNA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001529">
        <property type="entry name" value="Ser-tRNA-synth_IIa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00981">
        <property type="entry name" value="TRNASYNTHSER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46589">
        <property type="entry name" value="tRNA-binding arm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000098135" description="Serine--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="245"/>
            <end position="247"/>
        </location>
        <ligand>
            <name>L-serine</name>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="276"/>
            <end position="278"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="292"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="299"/>
        </location>
        <ligand>
            <name>L-serine</name>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="363"/>
            <end position="366"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="398"/>
        </location>
        <ligand>
            <name>L-serine</name>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00176"/>
        </source>
    </evidence>
    <sequence length="447" mass="51566" checksum="CD4D23557D69385E" modified="2008-05-20" version="1">MSYSVLEALRNNPDHVRKVLAARRLDVSLVDRFIELDGRWRQLKREVDELRRSYNQLSREGARAPPDRRREIVEKARELAARLEKVEKEMEAVEREREELLWSFPNLIHDSVPVCPEGVDSVPVRHWGTIRVVKGAAAPEGVEYVVVEKPPVGHADMAEVVLGMADTLKAGEVAGSRFYYLFDDLVWLDFALAMYALDRLAQQGFRPVVPPYMLKFDVIRRVLDFDTFKDAIYKIEGEDLYLIATAEHGIAAYLHKRELVEEELPLLFVGWSPCFRKEAGAGNRDLKGIFRVHIFHKVEQFVFSLPEDSWKWHEEITKNTESLIRDLGLPYRVVNICAHDLGAPAAKKYDIEAWYPAQGMYRELASCSNVTDWQSYRLGIRVTRKGMRREFVHTLNCTGLATTRTITAILENFQREDGAVEIPKALRPYLEPIRAAPKEYIYPRRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Z0</accession>
    <name>B1Y9Z0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1617</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350959.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Z0"/>
    <dbReference type="STRING" id="444157.Tneu_1617"/>
    <dbReference type="GeneID" id="6165830"/>
    <dbReference type="KEGG" id="tne:Tneu_1617"/>
    <dbReference type="eggNOG" id="arCOG05672">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_686281_0_0_2"/>
    <dbReference type="OrthoDB" id="29252at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="403" mass="42678" checksum="3EFAA077DBB3876A" modified="2008-05-20" version="1">MRRAALFVALAALLLISPPLAVLAAVLYAARYYIYAYSALWRQLVKCELYTPALSALGAAGALLSPYSGAAKALLLAMGAVAVYLAPTMPRLSRAVSVLTLGMAVETPAKPLVLVLAVAVAYLAYRRSACGFICQRTAAAPDGDVYYDARLGLVCLFAKGGRDLHSFFVKLGGSYIRCFYSICRKVNEEAFRRGVGTLDRYLPEPAAADFKGLIHFVGPPEVALKLVERYFGAGVAYGAVDAPPARLASLSSASPEVAVAVLETALGLTPEQTALVKDLLSRRSREEAAAWSLRYPWLRPILELWNGGAEPRGVAKSALPGRLGLADALLYAKAKNVPLVTDSGEAAQMAAGLGITVFLIADRPRGNFVVVGPTSLEVGGRRAEVAAGRFLAQLGGELYADDL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA13</accession>
    <name>RL40_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein eL40</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L40e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl40e</name>
        <name type="ordered locus">Tneu_1641</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL40 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350982.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA13"/>
    <dbReference type="SMR" id="B1YA13"/>
    <dbReference type="STRING" id="444157.Tneu_1641"/>
    <dbReference type="GeneID" id="6165643"/>
    <dbReference type="KEGG" id="tne:Tneu_1641"/>
    <dbReference type="eggNOG" id="arCOG04049">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_175093_1_0_2"/>
    <dbReference type="OrthoDB" id="45138at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1060.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00788">
        <property type="entry name" value="Ribosomal_eL40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023657">
        <property type="entry name" value="Ribosomal_eL40_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001975">
        <property type="entry name" value="Ribosomal_eL40_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038587">
        <property type="entry name" value="Ribosomal_eL40_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003161">
        <property type="entry name" value="PRK04136.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39649">
        <property type="entry name" value="50S RIBOSOMAL PROTEIN L40E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39649:SF1">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN EL40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01020">
        <property type="entry name" value="Ribosomal_L40e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01377">
        <property type="entry name" value="Ribosomal_L40e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="Zn-binding ribosomal proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000133753" description="Large ribosomal subunit protein eL40">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="53" mass="6329" checksum="B9603C7E4093B6DA" modified="2008-05-20" version="1">MPITLDPEKLAIVMKHRFQYKICRECGARNPPDAVKCRRCRSKNLRPKKFKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA14</accession>
    <name>B1YA14_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA-guanine(15) transglycosylase</fullName>
            <ecNumber evidence="6">2.4.2.48</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">7-cyano-7-deazaguanine tRNA-ribosyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Archaeal tRNA-guanine transglycosylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">tgtA</name>
        <name evidence="8" type="ordered locus">Tneu_0030</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>guanosine(15) in tRNA + 7-cyano-7-carbaguanine = 7-cyano-7-carbaguanosine(15) in tRNA + guanine</text>
            <dbReference type="Rhea" id="RHEA:43164"/>
            <dbReference type="Rhea" id="RHEA-COMP:10371"/>
            <dbReference type="Rhea" id="RHEA-COMP:10372"/>
            <dbReference type="ChEBI" id="CHEBI:16235"/>
            <dbReference type="ChEBI" id="CHEBI:45075"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="ChEBI" id="CHEBI:82850"/>
            <dbReference type="EC" id="2.4.2.48"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">tRNA modification; archaeosine-tRNA biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the archaeosine tRNA-ribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.48" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349410.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA14"/>
    <dbReference type="STRING" id="444157.Tneu_0030"/>
    <dbReference type="GeneID" id="6166119"/>
    <dbReference type="KEGG" id="tne:Tneu_0030"/>
    <dbReference type="eggNOG" id="arCOG00989">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030083_0_0_2"/>
    <dbReference type="OrthoDB" id="6871at2157"/>
    <dbReference type="UniPathway" id="UPA00393"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016763">
        <property type="term" value="F:pentosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002099">
        <property type="term" value="P:tRNA wobble guanine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.105">
        <property type="entry name" value="Queuine tRNA-ribosyltransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10630">
        <property type="entry name" value="Uracil-DNA glycosylase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01634">
        <property type="entry name" value="TgtA_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050076">
        <property type="entry name" value="ArchSynthase1/Queuine_TRR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036511">
        <property type="entry name" value="TGT-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004804">
        <property type="entry name" value="TgtA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002616">
        <property type="entry name" value="tRNA_ribo_trans-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00432">
        <property type="entry name" value="arcsn_tRNA_tgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00449">
        <property type="entry name" value="tgt_general"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46499">
        <property type="entry name" value="QUEUINE TRNA-RIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46499:SF1">
        <property type="entry name" value="QUEUINE TRNA-RIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01702">
        <property type="entry name" value="TGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88802">
        <property type="entry name" value="Pre-PUA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51713">
        <property type="entry name" value="tRNA-guanine transglycosylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 6" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="5 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-guanine(15) transglycosylase-like" evidence="7">
        <location>
            <begin position="12"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="6">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="272"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01702"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB38988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="494" mass="56881" checksum="900FB89D104B27C4" modified="2008-05-20" version="1">MSFEIVAKDLAGRVGLLHTKSGVVETPALFPVVDPRKQEVPLEAVQRYFGQVITNSYFIYRLTGGRAVDVKKMLGWGGVVMTDSGAYQILRYGTVEVDPDEILRFQQKIGSDIGVILDLPFDYEEPYGSALLKVEETIRRAKRAAAYLKEMDMLVVAPIQGALYADLLARSARELSRLGFHIFAIGSPTTLLEEYRFDLILRVVLEVKANIAREAPIHLFGAGHPLVLPFAVALGVDLFDSASYILYARDDRIILRDRTLRLDDVKTDYLPCSTKLCYTPVKELREMPKQERTLLIAEHNLAVLREELLEIRQRIHEGTLWEYLEIKARAHPTLYRFLKSIDRRLLEEYDPETHPDPHGLFFYSDTAPRRPEPARHRERLNNVEPLSRRAVVIKVEEKPYNRNWQYLYLKKTLGDRAHILFYDPIFGIIPEEIAEVYPLSQNESEGEDEEARAHAYEWLRRYDLVVLYNVDIPLMGKKVVKARSLEEVALYIQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA21</accession>
    <name>B1YA21_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0037</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349417.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA21"/>
    <dbReference type="STRING" id="444157.Tneu_0037"/>
    <dbReference type="GeneID" id="6165122"/>
    <dbReference type="KEGG" id="tne:Tneu_0037"/>
    <dbReference type="eggNOG" id="arCOG01702">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2313893_0_0_2"/>
    <dbReference type="OrthoDB" id="24131at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006388">
        <property type="term" value="P:tRNA splicing, via endonucleolytic cleavage and ligation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036167">
        <property type="entry name" value="tRNA_intron_Endo_cat-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53032">
        <property type="entry name" value="tRNA-intron endonuclease catalytic domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB38995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="97" mass="11163" checksum="E7656AFBA0132BDC" modified="2008-05-20" version="1">MSDVLFEQVTRDLRSKGFKILEKLGDRMFVAEKKEKYLFYVMVEGVEVTTQTLLSVINMGETLSMDTVLALVSNDGTVTYYFVRRIRLPRNVYAQGV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA29</accession>
    <name>GLYA_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Serine hydroxymethyltransferase</fullName>
            <shortName evidence="1">SHMT</shortName>
            <shortName evidence="1">Serine methylase</shortName>
            <ecNumber evidence="1">2.1.2.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">glyA</name>
        <name type="ordered locus">Tneu_0045</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; glycine biosynthesis; glycine from L-serine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the SHMT family.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.-" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349424.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA29"/>
    <dbReference type="SMR" id="B1YA29"/>
    <dbReference type="STRING" id="444157.Tneu_0045"/>
    <dbReference type="GeneID" id="6164800"/>
    <dbReference type="KEGG" id="tne:Tneu_0045"/>
    <dbReference type="eggNOG" id="arCOG00070">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022477_2_1_2"/>
    <dbReference type="OrthoDB" id="5821at2157"/>
    <dbReference type="UniPathway" id="UPA00288">
        <property type="reaction ID" value="UER01023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004372">
        <property type="term" value="F:glycine hydroxymethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019264">
        <property type="term" value="P:glycine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00378">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.640.10:FF:000101">
        <property type="entry name" value="Serine hydroxymethyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.1150.10:FF:000114">
        <property type="entry name" value="Serine hydroxymethyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00051">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001085">
        <property type="entry name" value="Ser_HO-MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049943">
        <property type="entry name" value="Ser_HO-MeTrfase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019798">
        <property type="entry name" value="Ser_HO-MeTrfase_PLP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039429">
        <property type="entry name" value="SHMT-like_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF000586">
        <property type="entry name" value="PRK00011.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11680">
        <property type="entry name" value="SERINE HYDROXYMETHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11680:SF35">
        <property type="entry name" value="SERINE HYDROXYMETHYLTRANSFERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00464">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000412">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00096">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0554">One-carbon metabolism</keyword>
    <keyword id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_0000369978" description="Serine hydroxymethyltransferase">
        <location>
            <begin position="1"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="120"/>
            <end position="122"/>
        </location>
        <ligand>
            <name>(6S)-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
        </ligand>
    </feature>
    <feature type="site" description="Plays an important role in substrate specificity" evidence="1">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="1">
        <location>
            <position position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00051"/>
        </source>
    </evidence>
    <sequence length="430" mass="47441" checksum="B4CB3EE1891B9953" modified="2008-05-20" version="1">MLPRELGEILDVVTRHNAWRRKETINLIASENVMSPLAELYYINDLAGRYAEGTVGNRYYQGTRYVDVLEDALVKKFSAVLEAKFVDVRPISGTVANLATYFALTPEGGTVASLPVKYGGHISHNTVGGVKALRLKTVELPWDLENFNVDVDAARKLIEEKRPNLIILGASLYLFPHPVKEVAEAAKTVGAYVLHDSAHVFGLIVGGVFPNPLKEGAHVTTASTHKTFPGPQGGVIATALDDERNSQIQRAVFPTFTSNYHLHRYAATYVTLVEMEVFGREYASRIVENARALAEALASEGVPPVAEKLGYTRTHQVAVDVSKFGGGDKAAALLEEANVIVNKNALPWDKSVLKPSGIRMGVQEMTRFGMGKDEMREIARFIARVLRGEDPAAVRRDVVEFRKSYLEIKYGFKIDRGEVEKVFNSLNLNT</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA34</accession>
    <name>RS17E_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein eS17</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">30S ribosomal protein S17e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps17e</name>
        <name type="ordered locus">Tneu_0050</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eS17 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349429.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA34"/>
    <dbReference type="SMR" id="B1YA34"/>
    <dbReference type="STRING" id="444157.Tneu_0050"/>
    <dbReference type="GeneID" id="6164811"/>
    <dbReference type="KEGG" id="tne:Tneu_0050"/>
    <dbReference type="eggNOG" id="arCOG01885">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_176720_2_0_2"/>
    <dbReference type="OrthoDB" id="52479at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.60.20">
        <property type="entry name" value="Ribosomal protein S17e-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00511">
        <property type="entry name" value="Ribosomal_eS17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001210">
        <property type="entry name" value="Ribosomal_eS17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018273">
        <property type="entry name" value="Ribosomal_eS17_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036401">
        <property type="entry name" value="Ribosomal_eS17_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002242">
        <property type="entry name" value="PRK01151.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10732">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10732:SF0">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00833">
        <property type="entry name" value="Ribosomal_S17e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116820">
        <property type="entry name" value="Rps17e-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00712">
        <property type="entry name" value="RIBOSOMAL_S17E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000127260" description="Small ribosomal subunit protein eS17">
        <location>
            <begin position="1"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00511"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="71" mass="8209" checksum="D471494247B05D96" modified="2008-05-20" version="1">MGRVRPRYIKSLGDKLLEMYPDRFTDSFEENKKAVAQLADIPSKRVRNRVAGYITRLVKRRKAQEKAEAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAD3</accession>
    <name>B1YAD3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Prefoldin subunit alpha</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">GimC subunit alpha</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">pfdA</name>
        <name evidence="8" type="ordered locus">Tneu_1660</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 5">Heterohexamer of two alpha and four beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the prefoldin alpha subunit family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the prefoldin subunit alpha family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351001.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAD3"/>
    <dbReference type="STRING" id="444157.Tneu_1660"/>
    <dbReference type="GeneID" id="6166253"/>
    <dbReference type="KEGG" id="tne:Tneu_1660"/>
    <dbReference type="eggNOG" id="arCOG01341">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1912415_0_0_2"/>
    <dbReference type="OrthoDB" id="27425at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016272">
        <property type="term" value="C:prefoldin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd23160">
        <property type="entry name" value="Prefoldin_alpha_GimC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00308">
        <property type="entry name" value="PfdA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011599">
        <property type="entry name" value="PFD_alpha_archaea"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009053">
        <property type="entry name" value="Prefoldin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004127">
        <property type="entry name" value="Prefoldin_subunit_alpha"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00293">
        <property type="entry name" value="prefoldin subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02996">
        <property type="entry name" value="Prefoldin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46579">
        <property type="entry name" value="Prefoldin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="84"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="NCBIfam" id="TIGR00293"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="132" mass="14788" checksum="22DBEEAB0145BD56" modified="2008-05-20" version="1">MSRQDVQRLLEEYQVISELLSGLQAQHATVSELLEELTTALDGVRLLKSEGPDRLVHIGAGLYVGGSFSSREVLTPLGAGYHAFVDLENAERILKERIEEYSRLKTSLEENIEKLAERAAQIRQVLERLGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAE0</accession>
    <name>B1YAE0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Deoxyribonuclease/rho motif-related TRAM</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1667</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351008.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAE0"/>
    <dbReference type="GeneID" id="6165437"/>
    <dbReference type="KEGG" id="tne:Tneu_1667"/>
    <dbReference type="eggNOG" id="arCOG01641">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_182721_0_0_2"/>
    <dbReference type="OrthoDB" id="28569at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01938">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TRAM" evidence="2">
        <location>
            <begin position="21"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="14"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="79" mass="8586" checksum="9B5E27F1A1CAECF7" modified="2008-05-20" version="1">MERRTRRGPPHGRHGPSGPKPVKEGDVVEVEIVEKSRRGDGVARVEGFVVFVPGAEPGQRVRVQIEKVGDTYAVGKVVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAE6</accession>
    <name>B1YAE6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1673</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351014.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAE6"/>
    <dbReference type="STRING" id="444157.Tneu_1673"/>
    <dbReference type="GeneID" id="6165338"/>
    <dbReference type="KEGG" id="tne:Tneu_1673"/>
    <dbReference type="eggNOG" id="arCOG05657">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_848926_0_0_2"/>
    <dbReference type="OrthoDB" id="28046at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="211"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="251"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="333" mass="36673" checksum="78CDDF672980FE3D" modified="2008-05-20" version="1">MSEDLNADVVVKISPNRALLVGSGKIQLGSSSVVGRVEVREDGLYLDGRLVVLRRALRCPVKVGGLYLCGGPPEVPRFFYREVYAEGLNLGLRLSELYATDRLNGGDCLAEYLYALVRGSPALWEIYRRGDPPPPRRCRDVVGVLVARGMRERRPYAPPSFGRETAALLGLLRFGEALEMVERSWLGFAVAMRYGIYSAVRWRLPPGGDSWLMLFGIYAALDPVVVPGGVAVDLGLLRALPYIVARVVGRWLVAFNVAGLYIAAGNFNMMVDGGRKRARYAACEGDRCVVGNLHFNQCLDVECGILRTSDFEFKGLVKCRDFGTTFIAVEPCK</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-09-23" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAF0</accession>
    <name>GGGPS_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Geranylgeranylglyceryl phosphate synthase</fullName>
            <shortName evidence="1">GGGP synthase</shortName>
            <shortName evidence="1">GGGPS</shortName>
            <ecNumber evidence="1">2.5.1.41</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">(S)-3-O-geranylgeranylglyceryl phosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Phosphoglycerol geranylgeranyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_1677</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>sn-glycerol 1-phosphate + (2E,6E,10E)-geranylgeranyl diphosphate = sn-3-O-(geranylgeranyl)glycerol 1-phosphate + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23404"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57677"/>
            <dbReference type="ChEBI" id="CHEBI:57685"/>
            <dbReference type="ChEBI" id="CHEBI:58756"/>
            <dbReference type="EC" id="2.5.1.41"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Membrane lipid metabolism; glycerophospholipid metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GGGP/HepGP synthase family. Group II subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.41" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351018.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAF0"/>
    <dbReference type="SMR" id="B1YAF0"/>
    <dbReference type="STRING" id="444157.Tneu_1677"/>
    <dbReference type="GeneID" id="6165273"/>
    <dbReference type="KEGG" id="tne:Tneu_1677"/>
    <dbReference type="eggNOG" id="arCOG01085">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068610_0_0_2"/>
    <dbReference type="OrthoDB" id="7409at2157"/>
    <dbReference type="UniPathway" id="UPA00940"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120536">
        <property type="term" value="F:heptaprenylglyceryl phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047294">
        <property type="term" value="F:phosphoglycerol geranylgeranyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046474">
        <property type="term" value="P:glycerophospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02812">
        <property type="entry name" value="PcrB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.390:FF:000001">
        <property type="entry name" value="Heptaprenylglyceryl phosphate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.390">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00112">
        <property type="entry name" value="GGGP_HepGP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039074">
        <property type="entry name" value="GGGP/HepGP_synthase_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038597">
        <property type="entry name" value="GGGP/HepGP_synthase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008205">
        <property type="entry name" value="GGGP_HepGP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010946">
        <property type="entry name" value="GGGP_synth"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01769">
        <property type="entry name" value="GGGP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01768">
        <property type="entry name" value="GGGP-family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003198">
        <property type="entry name" value="PRK04169.1-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40029">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40029:SF2">
        <property type="entry name" value="HEPTAPRENYLGLYCERYL PHOSPHATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01884">
        <property type="entry name" value="PcrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51395">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0444">Lipid biosynthesis</keyword>
    <keyword id="KW-0443">Lipid metabolism</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword id="KW-1208">Phospholipid metabolism</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_0000350689" description="Geranylgeranylglyceryl phosphate synthase">
        <location>
            <begin position="1"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="166"/>
            <end position="172"/>
        </location>
        <ligand>
            <name>sn-glycerol 1-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57685"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="197"/>
            <end position="198"/>
        </location>
        <ligand>
            <name>sn-glycerol 1-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57685"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="219"/>
            <end position="220"/>
        </location>
        <ligand>
            <name>sn-glycerol 1-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57685"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00112"/>
        </source>
    </evidence>
    <sequence length="239" mass="25331" checksum="A951E2DDCBF2CCDE" modified="2008-05-20" version="1">MKLYEYLLEGTKHFTLIDPDKSVDYLKIARYALEAGTDGILVGGSLGIRESQIAQVARDIKSVAHVPVVIFPGSVSQLTEEADGVLFLSVLNSLDPYYIIGAQVHGAVLLAKHYPRLEVISTAYVIVGDGGAAGFVSMSKPIPYTRPDIAAAYALAANYIGFKALYLEAGSGAPQPAPPEMVKAVRKAFPRVLIVGGGIRSGEAARAVARERPNVIVTGTLAEENPEKLGEIVKAVKSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAF8</accession>
    <name>B1YAF8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Large ribosomal subunit protein eL42</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpl44e</name>
        <name evidence="5" type="ordered locus">Tneu_1685</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="4">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the eukaryotic ribosomal protein eL42 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351026.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAF8"/>
    <dbReference type="STRING" id="444157.Tneu_1685"/>
    <dbReference type="GeneID" id="6165197"/>
    <dbReference type="KEGG" id="tne:Tneu_1685"/>
    <dbReference type="eggNOG" id="arCOG04109">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114645_2_1_2"/>
    <dbReference type="OrthoDB" id="52456at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.450.80:FF:000001">
        <property type="entry name" value="60S ribosomal protein L44"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01476">
        <property type="entry name" value="Ribosomal_L44e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000552">
        <property type="entry name" value="Ribosomal_eL44"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053708">
        <property type="entry name" value="Ribosomal_LSU_eL42"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004425">
        <property type="entry name" value="PRK05767.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10369">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L36A/L44"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00935">
        <property type="entry name" value="Ribosomal_L44"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="Zn-binding ribosomal proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="zinc finger region" description="C4-type" evidence="4">
        <location>
            <begin position="11"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="91" mass="10592" checksum="E933F5E1FC3B4E72" modified="2008-05-20" version="1">MKFPKAVNMYCPRCNTYTKHNVSNYHAGQRRTLAEGQRRYERKLKGYGSTPKPKQKRFAKVNKKVTLVFTCSKCGYKTVKSLGRMKKVELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAK6</accession>
    <name>B1YAK6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="14">DEAD_2 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Tneu_1737</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351074.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAK6"/>
    <dbReference type="STRING" id="444157.Tneu_1737"/>
    <dbReference type="GeneID" id="6165153"/>
    <dbReference type="KEGG" id="tne:Tneu_1737"/>
    <dbReference type="eggNOG" id="arCOG00770">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006515_9_0_2"/>
    <dbReference type="OrthoDB" id="27512at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016818">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006555">
        <property type="entry name" value="ATP-dep_Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045028">
        <property type="entry name" value="DinG/Rad3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014013">
        <property type="entry name" value="Helic_SF1/SF2_ATP-bd_DinG/Rad3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006554">
        <property type="entry name" value="Helicase-like_DEXD_c2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010614">
        <property type="entry name" value="RAD3-like_helicase_DEAD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11472">
        <property type="entry name" value="DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11472:SF34">
        <property type="entry name" value="REGULATOR OF TELOMERE ELONGATION HELICASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06733">
        <property type="entry name" value="DEAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13307">
        <property type="entry name" value="Helicase_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00488">
        <property type="entry name" value="DEXDc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00491">
        <property type="entry name" value="HELICc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51193">
        <property type="entry name" value="HELICASE_ATP_BIND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0227">DNA damage</keyword>
    <keyword evidence="11" id="KW-0234">DNA repair</keyword>
    <keyword evidence="10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="12" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="13">
        <location>
            <begin position="1"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB40655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="574" mass="64227" checksum="4D98222665641BCA" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="93" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAN7</accession>
    <name>B1YAN7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">Glutamyl-tRNA(Gln) amidotransferase subunit D</fullName>
            <shortName evidence="5">Glu-ADT subunit D</shortName>
            <ecNumber evidence="5 7">6.3.5.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">gatD</name>
        <name evidence="11" type="ordered locus">Tneu_0159</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 7">Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13 14">
            <text>L-glutamyl-tRNA(Gln) + L-glutamine + ATP + H2O = L-glutaminyl-tRNA(Gln) + L-glutamate + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17521"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="Rhea" id="RHEA-COMP:9684"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5 7">Heterodimer of GatD and GatE.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 7">Belongs to the asparaginase 1 family. GatD subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.-" evidence="5 7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349537.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAN7"/>
    <dbReference type="STRING" id="444157.Tneu_0159"/>
    <dbReference type="GeneID" id="6164642"/>
    <dbReference type="KEGG" id="tne:Tneu_0159"/>
    <dbReference type="eggNOG" id="arCOG01924">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019134_2_1_2"/>
    <dbReference type="OrthoDB" id="371959at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004067">
        <property type="term" value="F:asparaginase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050567">
        <property type="term" value="F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006450">
        <property type="term" value="P:regulation of translational fidelity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08962">
        <property type="entry name" value="GatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.520">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1170">
        <property type="entry name" value="L-asparaginase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00586">
        <property type="entry name" value="GatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006033">
        <property type="entry name" value="AsnA_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036152">
        <property type="entry name" value="Asp/glu_Ase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006034">
        <property type="entry name" value="Asparaginase/glutaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027475">
        <property type="entry name" value="Asparaginase/glutaminase_AS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040919">
        <property type="entry name" value="Asparaginase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011878">
        <property type="entry name" value="GatD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040918">
        <property type="entry name" value="GatD_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037222">
        <property type="entry name" value="GatD_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027473">
        <property type="entry name" value="L-asparaginase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027474">
        <property type="entry name" value="L-asparaginase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037152">
        <property type="entry name" value="L-asparaginase_N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00519">
        <property type="entry name" value="asnASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02153">
        <property type="entry name" value="gatD_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003217">
        <property type="entry name" value="PRK04183.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11707:SF28">
        <property type="entry name" value="60 KDA LYSOPHOSPHOLIPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11707">
        <property type="entry name" value="L-ASPARAGINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00710">
        <property type="entry name" value="Asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17763">
        <property type="entry name" value="Asparaginase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18195">
        <property type="entry name" value="GatD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500175">
        <property type="entry name" value="Glu_ADT_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001220">
        <property type="entry name" value="L-ASNase_gatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00139">
        <property type="entry name" value="ASNGLNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00870">
        <property type="entry name" value="Asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141300">
        <property type="entry name" value="GatD N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53774">
        <property type="entry name" value="Glutaminase/Asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00917">
        <property type="entry name" value="ASN_GLN_ASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51732">
        <property type="entry name" value="ASN_GLN_ASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 5 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 5 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GatD N-terminal" evidence="10">
        <location>
            <begin position="4"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="domain" description="L-asparaginase N-terminal" evidence="8">
        <location>
            <begin position="74"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="Asparaginase/glutaminase C-terminal" evidence="9">
        <location>
            <begin position="286"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 6">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF17763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF18195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="417" mass="45500" checksum="F9A0ED9D44D026AB" modified="2008-05-20" version="1">MYKRVRVVLENGDVFEGVLIPPTQFSDPDVVVLKLRNGYNVGLRKSRIKEMVDLGEVSGGQPAPPQIPKLEGEKVWLLATGGTILSRVDYVTGGVYPTMSVEYLFEILGGLDAPVVAEQVAAKFSEDMTPAVWSQIAARVGEAFRRGARGVVVLHGTDTMHYTAAALAFAFRSAPGPIALVGAQRSSDRPSTDAVLNLKAAIATAARAPFAESVVVMHKASGDGVIAVHRGTRVRKMHTSRRDAFQSINALPLAEYHVDQNLLKVIAEEYRERGALEYTDRFEEAVALVKFFPGMHPRMLDVLLEMGVKGVVIEGTGFGHVGEQLLPSVKRLVDAGVVVAMASQTLYGRVNLYVYRRGRELLSLGVVPLEDMLPEAAYAKMSWALANFKREEVPRVLTTPYAYEMSPRSDPTSFGTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAP3</accession>
    <name>B1YAP3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Polyprenyl synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0165</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349543.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAP3"/>
    <dbReference type="STRING" id="444157.Tneu_0165"/>
    <dbReference type="GeneID" id="6164815"/>
    <dbReference type="KEGG" id="tne:Tneu_0165"/>
    <dbReference type="eggNOG" id="arCOG01726">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014015_2_1_2"/>
    <dbReference type="OrthoDB" id="26738at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004659">
        <property type="term" value="F:prenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00685">
        <property type="entry name" value="Trans_IPPS_HT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="entry name" value="Farnesyl Diphosphate Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033749">
        <property type="entry name" value="Polyprenyl_synt_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12001">
        <property type="entry name" value="GERANYLGERANYL PYROPHOSPHATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12001:SF85">
        <property type="entry name" value="SHORT CHAIN ISOPRENYL DIPHOSPHATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00005">
        <property type="entry name" value="Isoprenoid_Synthase_Type_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01017">
        <property type="entry name" value="Polyprenyl_Transferase_Like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="Terpenoid synthases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00723">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="275"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="334" mass="37409" checksum="D4EACA584C09A5B4" modified="2008-05-20" version="1">MDVVTKLHKKYGAAVEKALERYLSIDLAPDFREEVLYQVKTGGKRLRPLLTLATAEAVSGRWEPAVPAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILIGIWYREAIEEAVLDTPKPLAFAKEVAKVIKAIDEGERLDILFEYAGREDPYFIKARKAEVTLEDYIHMVSLKTGALIAAAAKWGAMSVSDDGKLAEEAWNFGLKAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAIALTRLQPQERRRLLSILSKAEIAEEEVKEAVALMDSVKAREEALALAERYRREAEQHLAEIPNNEALRELLAFILERQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAQ7</accession>
    <name>B1YAQ7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Carboxypeptidase regulatory-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0180</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349557.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAQ7"/>
    <dbReference type="STRING" id="444157.Tneu_0180"/>
    <dbReference type="GeneID" id="6164650"/>
    <dbReference type="KEGG" id="tne:Tneu_0180"/>
    <dbReference type="eggNOG" id="arCOG03260">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_436580_0_0_2"/>
    <dbReference type="OrthoDB" id="31190at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1120">
        <property type="entry name" value="Carboxypeptidase-like, regulatory domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013784">
        <property type="entry name" value="Carb-bd-like_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49452">
        <property type="entry name" value="Starch-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="626" mass="66463" checksum="3D072D9F0B4815A7" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAR5</accession>
    <name>B1YAR5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerophosphoryl diester phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0188</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349565.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAR5"/>
    <dbReference type="STRING" id="444157.Tneu_0188"/>
    <dbReference type="GeneID" id="6165049"/>
    <dbReference type="KEGG" id="tne:Tneu_0188"/>
    <dbReference type="eggNOG" id="arCOG00701">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030006_3_5_2"/>
    <dbReference type="OrthoDB" id="19020at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08556">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="entry name" value="Phosphatidylinositol (PI) phosphodiesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46211:SF14">
        <property type="entry name" value="GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46211">
        <property type="entry name" value="GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="PLC-like phosphodiesterases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GP-PDE" evidence="1">
        <location>
            <begin position="10"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="227" mass="24998" checksum="3276341C93E1A258" modified="2008-05-20" version="1">MDLLETLRRRAVVGHRGYPARELENTLQSIEAAIAHGADAVEVDVQVTADGVAVLSHDDTLERTFGLPLNVRQAAWEEVKKVERGRYRVPTLREALELVAERVGVLVEVKHPEDAHIVARTIREAGAARWTAVISFHEEALRGVDLYRGLIYAKPPGRVVDAKRLGCHIVLPHHALATERAVALAHKMGLYVVAWTVNSPATARRLWEIGVDGVATDDVENIKAVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAU7</accession>
    <name>B1YAU7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glycosyltransferase RgtA/B/C/D-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0221</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349597.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAU7"/>
    <dbReference type="GeneID" id="6165963"/>
    <dbReference type="KEGG" id="tne:Tneu_0221"/>
    <dbReference type="eggNOG" id="arCOG10055">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_805663_0_0_2"/>
    <dbReference type="OrthoDB" id="43795at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="107"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="136"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="234"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="266"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="302"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="324" mass="35630" checksum="D20368F5E335835E" modified="2008-05-20" version="1">MGPREYAVLALLLTGAKSLVVLHQGWATAWDAQHFQRIAALGYRDPADYAFPPLFPLLTALLSKTAGCDAVAASIIVANFFSYLTPLVVGGLYGFKTALFLALFPTYVLYTTAPYAEGVALFFASAALLYAERRPALSSTFFALAVLAKYQMALALPAFVKTWRLRHYLPPAAAVSAVALWHTAALGSPLAYFEIQRQIWGAAPATPLQQAQWILEGWLTAQSWTLFGQRLEPWMWLARNWAIATFFLAGAVSLRGLHRRYALVQILPHLFTVGTPAISAPRFMLAAFPALSPYARRVSPSLYIPAALALTAFVARWHFEAFFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAX5</accession>
    <name>B1YAX5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleotidyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1757</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351094.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAX5"/>
    <dbReference type="STRING" id="444157.Tneu_1757"/>
    <dbReference type="GeneID" id="6165454"/>
    <dbReference type="KEGG" id="tne:Tneu_1757"/>
    <dbReference type="eggNOG" id="arCOG00663">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029499_2_2_2"/>
    <dbReference type="OrthoDB" id="15372at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04181">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050486">
        <property type="entry name" value="Mannose-1P_guanyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22572">
        <property type="entry name" value="SUGAR-1-PHOSPHATE GUANYL TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Nucleotidyl transferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="228" mass="25322" checksum="2FD05B1C171B07D3" modified="2008-05-20" version="1">MQAVVLAGGFGKRLAPLTSEVPKPLLPVGGRPILVRQIEWLRRYGIVDIVLAVGYLRHKIFEALGDGRKYGVRLFYSVEEEPLGTGGAIKNAAPYITDDVFIVVNGDVLTDLPIEGLVEALEGADGAIALVPLRSPYGVVEFDSSGYISRFREKPLLEGFYINAGVYALRKRVLSELPDRGNIEETLFPSLAKQRRLKAVVFRDVFWRSVDSLKDLEEVDRHFAGNEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB18</accession>
    <name>B1YB18_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">NADH/Ubiquinone/plastoquinone (Complex I)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1800</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351137.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB18"/>
    <dbReference type="STRING" id="444157.Tneu_1800"/>
    <dbReference type="GeneID" id="6164410"/>
    <dbReference type="KEGG" id="tne:Tneu_1800"/>
    <dbReference type="eggNOG" id="arCOG01537">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_627927_0_0_2"/>
    <dbReference type="OrthoDB" id="19089at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050586">
        <property type="entry name" value="CPA3_Na-H_Antiporter_D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003918">
        <property type="entry name" value="NADH_UbQ_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42703:SF1">
        <property type="entry name" value="NA(+)_H(+) ANTIPORTER SUBUNIT D1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42703">
        <property type="entry name" value="NADH DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01437">
        <property type="entry name" value="NUOXDRDTASE4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="29"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="64"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="93"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="115"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="178"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="215"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="244"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="297"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="334"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="368"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="407"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="domain" description="NADH:quinone oxidoreductase/Mrp antiporter transmembrane" evidence="7">
        <location>
            <begin position="113"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="429" mass="46256" checksum="99268FA6A0D98F9F" modified="2008-05-20" version="1">MYSEVFILATALSAALALAALRLGYPAALASIASMLLFLAPGSAVLVTLPYVGEVAVAMDGHKLPFVAASVLLGLIVTFYAPRYLKHLGAPNWYYGVHALYVLSFVYIVLFENLFFVFLALELSIVTSFLLIWYFGYGNRRFVGLLYFVWAQIGSILFLIGVALTGRFTASGFETARLAFDLATFLVLLGLLVKMGTAGVHFWLPYAHAEAPTPLSALLSPIHVGLMSYWIWRLKTGAGWPLEALFLYGLATAVYGSLLVFRETDFKRALADSTVANMGLLLAAASIPRDFSYTATALLFVGHAFAKAALFMLAGIYIVSLHTREIGAARWDRHLLAVGILGFVALAGLFGINLLGKAYVAAGVPATLSAAALAVFALLSTAVYSFYLLNQLYRAGEAQVEYPPDMYAAALAAAATPYVLLAALPLWLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB26</accession>
    <name>B1YB26_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase U62 modulator of DNA gyrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1808</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351145.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB26"/>
    <dbReference type="STRING" id="444157.Tneu_1808"/>
    <dbReference type="GeneID" id="6164396"/>
    <dbReference type="KEGG" id="tne:Tneu_1808"/>
    <dbReference type="eggNOG" id="arCOG00322">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026425_4_1_2"/>
    <dbReference type="OrthoDB" id="84520at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2290.10">
        <property type="entry name" value="PmbA/TldD superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045569">
        <property type="entry name" value="Metalloprtase-TldD/E_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035068">
        <property type="entry name" value="TldD/PmbA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036059">
        <property type="entry name" value="TldD/PmbA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43666:SF1">
        <property type="entry name" value="CONSERVED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43666">
        <property type="entry name" value="TLDD PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19289">
        <property type="entry name" value="PmbA_TldD_3rd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111283">
        <property type="entry name" value="Putative modulator of DNA gyrase, PmbA/TldD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metalloprotease TldD/E C-terminal" evidence="1">
        <location>
            <begin position="204"/>
            <end position="427"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="428" mass="46608" checksum="124C90F5EEE33EBE" modified="2008-05-20" version="1">MTLLKLVRGKVDEAIAVRTVVENYMARFANDEITVFKSWRTESLYLRLAKGRKTALLGFTGPVDLREVDRAVSRMPSLPDDPLYVPAAGAKPPSRAEPPEDFERIPDLVKRAIDAAEGAERSAGVVHLTYVQKWYEDTAGGEGHYAVNRVYMTVRSFLGELAATSAAAGRRLSEIDADAVGAENSRLLSIAKGLPRTRLEPSVADLLLSPLVLGHLMGEVVQTWANGLDVLAGSSRYGRGDLGREAAAPVLTLVEESHNPSVYGYTPFDFEGLAPRPVEIYRRGTLSGFIHTRGTAAALGMEPTGHALYGWARPAPGHIWVAPGDGPDDLEALFVDLGNGVYIHNNWYTRFQNVKLGQFSTVGRDVALLIKGGRPTASVKYVRLADTLERVVKGVAELSKTARQIYWWDMPTPANAPYAVVRSIAVTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB36</accession>
    <name>B1YB36_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">SMC domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1819</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351155.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB36"/>
    <dbReference type="STRING" id="444157.Tneu_1819"/>
    <dbReference type="GeneID" id="6164597"/>
    <dbReference type="KEGG" id="tne:Tneu_1819"/>
    <dbReference type="eggNOG" id="arCOG00198">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="eggNOG" id="arCOG00368">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004785_0_2_2"/>
    <dbReference type="OrthoDB" id="25344at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.510">
        <property type="entry name" value="Helix hairpin bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013134">
        <property type="entry name" value="Zn_hook_RAD50"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32114">
        <property type="entry name" value="ABC TRANSPORTER ABCH.3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32114:SF2">
        <property type="entry name" value="ABC TRANSPORTER ABCH.3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75712">
        <property type="entry name" value="Rad50 coiled-coil Zn hook"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51131">
        <property type="entry name" value="ZN_HOOK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Zinc-hook" evidence="8">
        <location>
            <begin position="313"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="171"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="320"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="371"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="359"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="362"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="702" mass="79894" checksum="CCC3AB58331CEC06" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB61</accession>
    <name>SPEE_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Polyamine aminopropyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Putrescine aminopropyltransferase</fullName>
            <shortName evidence="1">PAPT</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Spermidine synthase</fullName>
            <shortName evidence="1">SPDS</shortName>
            <shortName evidence="1">SPDSY</shortName>
            <ecNumber evidence="1">2.5.1.16</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">speE</name>
        <name type="ordered locus">Tneu_0239</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-adenosyl 3-(methylsulfanyl)propylamine + putrescine = S-methyl-5'-thioadenosine + spermidine + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12721"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
            <dbReference type="ChEBI" id="CHEBI:57443"/>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
            <dbReference type="ChEBI" id="CHEBI:326268"/>
            <dbReference type="EC" id="2.5.1.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amine and polyamine biosynthesis; spermidine biosynthesis; spermidine from putrescine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer or homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the spermidine/spermine synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.16" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349613.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB61"/>
    <dbReference type="SMR" id="B1YB61"/>
    <dbReference type="STRING" id="444157.Tneu_0239"/>
    <dbReference type="GeneID" id="6165876"/>
    <dbReference type="KEGG" id="tne:Tneu_0239"/>
    <dbReference type="eggNOG" id="arCOG00050">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048199_0_1_2"/>
    <dbReference type="OrthoDB" id="10538at2157"/>
    <dbReference type="UniPathway" id="UPA00248">
        <property type="reaction ID" value="UER00314"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004766">
        <property type="term" value="F:spermidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010487">
        <property type="term" value="F:thermospermine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008295">
        <property type="term" value="P:spermidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.150:FF:000088">
        <property type="entry name" value="Polyamine aminopropyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.140.10">
        <property type="entry name" value="Spermidine synthase, tetramerisation domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00198">
        <property type="entry name" value="Spermidine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030374">
        <property type="entry name" value="PABS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030373">
        <property type="entry name" value="PABS_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001045">
        <property type="entry name" value="Spermi_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035246">
        <property type="entry name" value="Spermidine_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037163">
        <property type="entry name" value="Spermidine_synt_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43317">
        <property type="entry name" value="THERMOSPERMINE SYNTHASE ACAULIS5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43317:SF1">
        <property type="entry name" value="THERMOSPERMINE SYNTHASE ACAULIS5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17284">
        <property type="entry name" value="Spermine_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01564">
        <property type="entry name" value="Spermine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01330">
        <property type="entry name" value="PABS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51006">
        <property type="entry name" value="PABS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0620">Polyamine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0745">Spermidine biosynthesis</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000099304" description="Polyamine aminopropyltransferase">
        <location>
            <begin position="1"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="PABS" evidence="1">
        <location>
            <begin position="5"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="164"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>S-methyl-5'-thioadenosine</name>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>spermidine</name>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>spermidine</name>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>S-methyl-5'-thioadenosine</name>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="143"/>
            <end position="144"/>
        </location>
        <ligand>
            <name>S-methyl-5'-thioadenosine</name>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00198"/>
        </source>
    </evidence>
    <sequence length="291" mass="32644" checksum="1183535CCBCEE1CF" modified="2008-05-20" version="1">MAKTPGPISLIEPLSGNSALLVKINAVYVVKRSRYQEIVVADTEDFGRALILDDYIQSSYYDEVYYHESLVHPAMSTHPSPADVLILGGGEGATLREVLKHRTVKRAVMVDIDGDVVEVARRYLPQMHQGAFDDPRAQVVIEDGFVYVERALAAGDKFDVVIMDLTDPYSSDIAKQLYAPGFFKKVRGLLREDGLVVTQAGNSFFFPEAYDMVLHGVRSSFPTVAEYSVWIPSFGYAVNYILGSLKYNPTALTPEEVDRRLRERGVQTHFYSGRTHLGLMSLPIHRKIRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB89</accession>
    <name>B1YB89_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Pyridoxal 5'-phosphate synthase subunit PdxS</fullName>
            <shortName evidence="7">PLP synthase subunit PdxS</shortName>
            <ecNumber evidence="7">4.3.3.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Pdx1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pdxS</name>
        <name evidence="10" type="ordered locus">Tneu_0267</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>aldehydo-D-ribose 5-phosphate + D-glyceraldehyde 3-phosphate + L-glutamine = pyridoxal 5'-phosphate + L-glutamate + phosphate + 3 H2O + H(+)</text>
            <dbReference type="Rhea" id="RHEA:31507"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58273"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
            <dbReference type="EC" id="4.3.3.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Cofactor biosynthesis; pyridoxal 5'-phosphate biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">In the presence of PdxT, forms a dodecamer of heterodimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7 8">Belongs to the PdxS/SNZ family.</text>
    </comment>
    <dbReference type="EC" id="4.3.3.6" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349641.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB89"/>
    <dbReference type="STRING" id="444157.Tneu_0267"/>
    <dbReference type="GeneID" id="6165566"/>
    <dbReference type="KEGG" id="tne:Tneu_0267"/>
    <dbReference type="eggNOG" id="arCOG04075">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055352_1_0_2"/>
    <dbReference type="OrthoDB" id="6840at2157"/>
    <dbReference type="UniPathway" id="UPA00245"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036381">
        <property type="term" value="F:pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042823">
        <property type="term" value="P:pyridoxal phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008615">
        <property type="term" value="P:pyridoxine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04727">
        <property type="entry name" value="pdxS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.70:FF:000001">
        <property type="entry name" value="Pyridoxine biosynthesis protein PDX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01824">
        <property type="entry name" value="PdxS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001852">
        <property type="entry name" value="PdxS/SNZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033755">
        <property type="entry name" value="PdxS/SNZ_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003215">
        <property type="entry name" value="PRK04180.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31829">
        <property type="entry name" value="PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31829:SF0">
        <property type="entry name" value="PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01680">
        <property type="entry name" value="SOR_SNZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029271">
        <property type="entry name" value="Pdx1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="Ribulose-phoshate binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01235">
        <property type="entry name" value="PDXS_SNZ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51129">
        <property type="entry name" value="PDXS_SNZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="3 7" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0704">Schiff base</keyword>
    <feature type="domain" description="PdxS/SNZ N-terminal" evidence="9">
        <location>
            <begin position="45"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with D-ribose 5-phosphate" evidence="7">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>D-ribose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>D-ribose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="256"/>
        </location>
        <ligand>
            <name>D-ribose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="277"/>
            <end position="278"/>
        </location>
        <ligand>
            <name>D-ribose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00047992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="338" mass="36981" checksum="7ABB8C895501147F" modified="2008-05-20" version="1">MIGEVYAHLEKIRDFFYGLAEVRDRLRESGVTWPKPLPEAEVGTVRVKIGLPAMLRRGVIMDVTSVEQAQIAEEAGAVGVMVLDKLPYDVRKAGGVARMADVKVIEEVMSHITIPVSAKVRIGHYYEAVILQEIGVDLIDESEVLTPVDEQHHINKWAFAVPFVNGCRELCEALRRISEGASMIRSKGEAGTGNVSEAVKHFKALYGAIEELSAALRTGDEERIRDYARRCQAPIELAALTARLGRLPVVTFAAGGIATPADAALMMWLGADGIFVGSGIFKSQDPRERAEAIVLAAAYWDDPEKVVEAQRMVSEKSAMMGIDVKTLKPEELLQTRGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBF0</accession>
    <name>B1YBF0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0330</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349702.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBF0"/>
    <dbReference type="STRING" id="444157.Tneu_0330"/>
    <dbReference type="GeneID" id="6165141"/>
    <dbReference type="KEGG" id="tne:Tneu_0330"/>
    <dbReference type="eggNOG" id="arCOG05372">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_11_2"/>
    <dbReference type="OrthoDB" id="18209at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43850">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN MA_4021-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43850:SF2">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN MA_4021-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="3">
        <location>
            <begin position="2"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="255" mass="27201" checksum="D3B7220B05163556" modified="2008-05-20" version="1">MIEIRGVKVRAGTFEVLAEGAEVVGKAVLLGPNGSGKTTLLRAVSGVIPYEGSIKIDGVEVDSARGLHTVSSNLPEIYRIAYDVAGLLEVFEDLKGVDRGEFEALMGRLGLGREVMRRPVHALSAGQWSLVRLALALSSRPKTILVDEPFENVDPARRSVVLKLLVERGESGIVATHDLDALKAMRGWDAYFMLEGRLYGPVSVDDLLASGLVRGRAGGALLTLKVGGVEYSVVKGAGVKFGEMGTVNRIYGLAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBH7</accession>
    <name>B1YBH7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Peptidase S49</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1864</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S49 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351198.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBH7"/>
    <dbReference type="STRING" id="444157.Tneu_1864"/>
    <dbReference type="GeneID" id="6164828"/>
    <dbReference type="KEGG" id="tne:Tneu_1864"/>
    <dbReference type="eggNOG" id="arCOG01311">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_445943_0_0_2"/>
    <dbReference type="OrthoDB" id="27099at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07023">
        <property type="entry name" value="S49_Sppa_N_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.226.10">
        <property type="entry name" value="2-enoyl-CoA Hydratase, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002142">
        <property type="entry name" value="Peptidase_S49"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047272">
        <property type="entry name" value="S49_SppA_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42987">
        <property type="entry name" value="PEPTIDASE S49"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42987:SF4">
        <property type="entry name" value="PROTEASE SOHB-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01343">
        <property type="entry name" value="Peptidase_S49"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="ClpP/crotonase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0720">Serine protease</keyword>
    <feature type="domain" description="Peptidase S49" evidence="5">
        <location>
            <begin position="106"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="550" mass="58533" checksum="13ED480F8D670C9D" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBJ0</accession>
    <name>B1YBJ0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1877</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBJ0"/>
    <dbReference type="STRING" id="444157.Tneu_1877"/>
    <dbReference type="KEGG" id="tne:Tneu_1877"/>
    <dbReference type="eggNOG" id="arCOG05470">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2695918_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="35"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="73" mass="8196" checksum="0CAD055AF3C5054D" modified="2008-05-20" version="1">MAAFASEALGKLEKGKAVGERELIFLALYLILRRLEELEEEQRNTLNAFHRLDELVDVVKELKAAVKKLAGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBJ1</accession>
    <name>B1YBJ1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF996 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1878</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351212.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBJ1"/>
    <dbReference type="STRING" id="444157.Tneu_1878"/>
    <dbReference type="GeneID" id="6164488"/>
    <dbReference type="KEGG" id="tne:Tneu_1878"/>
    <dbReference type="eggNOG" id="arCOG01644">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105758_2_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010397">
        <property type="entry name" value="DUF996"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06195">
        <property type="entry name" value="DUF996"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="170" mass="17946" checksum="863218CE3A89BD5C" modified="2008-05-20" version="1">MDLDLARVFAAVGAFLAGAGVVSSWVATLVGAVLMYVGVLEFLGRLGDARGDALSWLVYVIVASLAYTIAYSVAGFSISHLLWGTGLHGVALAVAAAAWVVGWVFQLASAYRFRRVLDTLARGTGEEVFKTADKLYWWGSASAVVVVGIVLLFVAYILLGVGFLTAKIRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBK2</accession>
    <name>B1YBK2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Sodium/calcium exchanger membrane region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1889</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351223.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBK2"/>
    <dbReference type="STRING" id="444157.Tneu_1889"/>
    <dbReference type="GeneID" id="6165130"/>
    <dbReference type="KEGG" id="tne:Tneu_1889"/>
    <dbReference type="eggNOG" id="arCOG02881">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_072251_0_0_2"/>
    <dbReference type="OrthoDB" id="27854at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1420.30">
        <property type="entry name" value="NCX, central ion-binding region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004837">
        <property type="entry name" value="NaCa_Exmemb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044880">
        <property type="entry name" value="NCX_ion-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01699">
        <property type="entry name" value="Na_Ca_ex"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="56"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="92"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="129"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="152"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="192"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="226"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="262"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="domain" description="Sodium/calcium exchanger membrane region" evidence="6">
        <location>
            <begin position="26"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="Sodium/calcium exchanger membrane region" evidence="6">
        <location>
            <begin position="197"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="343" mass="36692" checksum="515EF184965ADE20" modified="2008-05-20" version="1">MAEVGGSGPGHAAEVSLVPSIGPLGVVVGILLTVLAGLLIEQLVHYMSWRYRRAAVGVAAIFAPIITSSPELAVFTVALLRGQAEIAWGSIVAQPFMAATVIYPVVILTSITAWALGRRRYKLPHVHRIVAVPLLVFTIPLLPILFLHPERYGVFGNLYGVFLLVLYFLYAKFMLREEEVEKAGVSLWLRNPLAQTGVALLAMALGAEWLVGGIKELGAAAGLDKLALSIILVPIATVVPESIVGLIFIAKGKDDEGVSVIVGEKALYSTFYPGLAMALGVYTLEEAAATALTLSIVVSIFEVVAIWFGYFGLTAPIGLAGYLYYVLCYTLHQSCPLWAPTPS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBK5</accession>
    <name>TRPC_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Indole-3-glycerol phosphate synthase</fullName>
            <shortName evidence="1">IGPS</shortName>
            <ecNumber evidence="1">4.1.1.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">trpC</name>
        <name type="ordered locus">Tneu_1892</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate + H(+) = (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:23476"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58613"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="EC" id="4.1.1.48"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 4/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TrpC family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.48" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351226.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBK5"/>
    <dbReference type="SMR" id="B1YBK5"/>
    <dbReference type="STRING" id="444157.Tneu_1892"/>
    <dbReference type="GeneID" id="6164950"/>
    <dbReference type="KEGG" id="tne:Tneu_1892"/>
    <dbReference type="eggNOG" id="arCOG01088">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034247_0_1_2"/>
    <dbReference type="OrthoDB" id="15223at2157"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00043"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004425">
        <property type="term" value="F:indole-3-glycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004640">
        <property type="term" value="F:phosphoribosylanthranilate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:L-tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00331">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00134_A">
        <property type="entry name" value="IGPS_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045186">
        <property type="entry name" value="Indole-3-glycerol_P_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013798">
        <property type="entry name" value="Indole-3-glycerol_P_synth_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001468">
        <property type="entry name" value="Indole-3-GlycerolPSynthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22854:SF2">
        <property type="entry name" value="INDOLE-3-GLYCEROL-PHOSPHATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22854">
        <property type="entry name" value="TRYPTOPHAN BIOSYNTHESIS PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00218">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="Ribulose-phoshate binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00614">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword id="KW-0210">Decarboxylase</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="chain" id="PRO_1000198793" description="Indole-3-glycerol phosphate synthase">
        <location>
            <begin position="1"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00134"/>
        </source>
    </evidence>
    <sequence length="249" mass="27871" checksum="8D1A7694B0DED56B" modified="2008-05-20" version="1">MDFLVAVKKTVELRLSTEPSPPQRTAPLVDFTKAVGDFGIIAEYKRASPRGVVRLDLPPWAYFAELHSYASAFSVLTEPFWFLGDYRFIPIAKAFKPVLMKDFVIDRRQIEAAYGYGADAVLIIYRLVEREKAMELAEYAQRLGLTPLVEVDNAQDAREVATWGGRVVIGINARDLRTLETNLTRAFDIAKSLRGDVDYIIESGISRPEEVEKACLLYARGVLVGTSLMKNPALAKELKAAAERCLARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBK6</accession>
    <name>B1YBK6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Queuosine precursor transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1893</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351227.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBK6"/>
    <dbReference type="STRING" id="444157.Tneu_1893"/>
    <dbReference type="GeneID" id="6164850"/>
    <dbReference type="KEGG" id="tne:Tneu_1893"/>
    <dbReference type="eggNOG" id="arCOG04284">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1227694_0_0_2"/>
    <dbReference type="OrthoDB" id="27816at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003744">
        <property type="entry name" value="YhhQ"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00697">
        <property type="entry name" value="queuosine precursor transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34300">
        <property type="entry name" value="QUEUOSINE PRECURSOR TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34300:SF2">
        <property type="entry name" value="QUEUOSINE PRECURSOR TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02592">
        <property type="entry name" value="Vut_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="31"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="54"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="91"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="130"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="163"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="189"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="NCBIfam" id="TIGR00697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="220" mass="23913" checksum="575A1F6F824890FF" modified="2008-05-20" version="1">MFAILQAWAYGVALYLIYLTLIRLWRERIDAVLVGLFFGTLTAAQFIANKLVDYGIGVAPAGTVIFMTNVAVLDAMALFFGRGFAMRAVRLGFFFQAAVAFAAWAAAQLPPPAWFAERAAVVDSVIAPSARIALASLAAYLISSTVDVYIVTKWPRLHILARVYSSSFVAMAVDTLVFISLAFGPEAQIIVGQILVKWAQVPLEALLIYGARRYVASLKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBK9</accession>
    <name>B1YBK9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">precorrin-2 dehydrogenase</fullName>
            <ecNumber evidence="2">1.3.1.76</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1896</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>precorrin-2 + NAD(+) = sirohydrochlorin + NADH + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:15613"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58351"/>
            <dbReference type="ChEBI" id="CHEBI:58827"/>
            <dbReference type="EC" id="1.3.1.76"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Porphyrin-containing compound metabolism; siroheme biosynthesis; sirohydrochlorin from precorrin-2: step 1/1.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.76" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351230.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBK9"/>
    <dbReference type="STRING" id="444157.Tneu_1896"/>
    <dbReference type="GeneID" id="6165004"/>
    <dbReference type="KEGG" id="tne:Tneu_1896"/>
    <dbReference type="eggNOG" id="arCOG01044">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011276_8_2_2"/>
    <dbReference type="OrthoDB" id="10510at2157"/>
    <dbReference type="UniPathway" id="UPA00262">
        <property type="reaction ID" value="UER00222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004325">
        <property type="term" value="F:ferrochelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043115">
        <property type="term" value="F:precorrin-2 dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019354">
        <property type="term" value="P:siroheme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028161">
        <property type="entry name" value="Met8-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006367">
        <property type="entry name" value="Sirohaem_synthase_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01470">
        <property type="entry name" value="cysG_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35330">
        <property type="entry name" value="SIROHEME BIOSYNTHESIS PROTEIN MET8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35330:SF1">
        <property type="entry name" value="SIROHEME BIOSYNTHESIS PROTEIN MET8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13241">
        <property type="entry name" value="NAD_binding_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75615">
        <property type="entry name" value="Siroheme synthase middle domains-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00047561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="217" mass="24196" checksum="504FE580312BC74D" modified="2008-05-20" version="1">MRIPLWVEASRLKVLVLGGGAVGTRRARYFHSAGAKVRVVARDIAPELQTLGVEIKQADLNHYDPAEDMRWADVVVIAVSDAALAEKLYRQAEALGKLVNDATDAARTHVVVPYERQIAGLRVAVTSEGAAGTPARLSLDVIEDCVKRSWIPTFYRAYSQLKSEAKTHIKDVKTRLRFYQLLAEDEKFMELVKKGDEKAAVERGREILKTLWGENPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBL1</accession>
    <name>B1YBL1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uroporphyrinogen III synthase HEM4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1898</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351232.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBL1"/>
    <dbReference type="STRING" id="444157.Tneu_1898"/>
    <dbReference type="GeneID" id="6164878"/>
    <dbReference type="KEGG" id="tne:Tneu_1898"/>
    <dbReference type="eggNOG" id="arCOG02048">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1307863_0_0_2"/>
    <dbReference type="OrthoDB" id="15395at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004852">
        <property type="term" value="F:uroporphyrinogen-III synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033014">
        <property type="term" value="P:tetrapyrrole biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10090">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036108">
        <property type="entry name" value="4pyrrol_syn_uPrphyn_synt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003754">
        <property type="entry name" value="4pyrrol_synth_uPrphyn_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02602">
        <property type="entry name" value="HEM4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69618">
        <property type="entry name" value="HemD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tetrapyrrole biosynthesis uroporphyrinogen III synthase" evidence="1">
        <location>
            <begin position="39"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="210" mass="21794" checksum="0DD21D2BA840E181" modified="2008-05-20" version="1">MGDGAEVVVVRIKEGGCPPGVRCLTIGRVVPRRGVEVPDGDYLVVMSPAVAQAVDVGKLRQRFRCVVCVGPSTARAVGGCAVPREYTSYGVARLLKELAPGRVVVLRSSAGNDVLRRLLPGVVEVPVYDVELDPAKIRAAAEAVAQARAVVVTSSAVAEAVAKAVDLGGKVVVAIGAVTSQRLAQLGIRHITAEEATIEKAVETAKKALI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBN3</accession>
    <name>B1YBN3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1920</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351254.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBN3"/>
    <dbReference type="GeneID" id="6164871"/>
    <dbReference type="KEGG" id="tne:Tneu_1920"/>
    <dbReference type="eggNOG" id="arCOG06998">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1590948_0_0_2"/>
    <dbReference type="OrthoDB" id="26472at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00043">
        <property type="entry name" value="CYCLIN_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.10">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036915">
        <property type="entry name" value="Cyclin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeodomain-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47954">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="167" mass="18999" checksum="225E6ADB32AF45EB" modified="2008-05-20" version="1">MFTYWQRRDDPLSRCIEEVVSSAGGGEDRCLLAAAEYLCRKRAGEATSMDKIAAKYGVSLLCVYRKYSGLFQVGIRYPRNRVEQLLEQVRQRYGPAVAEEVESLYAVLKSRGALDGLKPEGVVAALLYYAAKKHGLRYDSHRAAEEFGVHPETVEKNIVLFQWYLQR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBN8</accession>
    <name>ILVD_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Dihydroxy-acid dehydratase</fullName>
            <shortName evidence="1">DAD</shortName>
            <ecNumber evidence="1">4.2.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ilvD</name>
        <name type="ordered locus">Tneu_1925</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Functions in the biosynthesis of branched-chain amino acids. Catalyzes the dehydration of (2R,3R)-2,3-dihydroxy-3-methylpentanoate (2,3-dihydroxy-3-methylvalerate) into 2-oxo-3-methylpentanoate (2-oxo-3-methylvalerate) and of (2R)-2,3-dihydroxy-3-methylbutanoate (2,3-dihydroxyisovalerate) into 2-oxo-3-methylbutanoate (2-oxoisovalerate), the penultimate precursor to L-isoleucine and L-valine, respectively.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2R)-2,3-dihydroxy-3-methylbutanoate = 3-methyl-2-oxobutanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:24809"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:49072"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:24810"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2R,3R)-2,3-dihydroxy-3-methylpentanoate = (S)-3-methyl-2-oxopentanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:27694"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:35146"/>
            <dbReference type="ChEBI" id="CHEBI:49258"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:27695"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </cofactor>
        <text evidence="1">Binds 1 [2Fe-2S] cluster per subunit. This cluster acts as a Lewis acid cofactor.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 3/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the IlvD/Edd family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.9" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351259.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBN8"/>
    <dbReference type="SMR" id="B1YBN8"/>
    <dbReference type="STRING" id="444157.Tneu_1925"/>
    <dbReference type="GeneID" id="6164868"/>
    <dbReference type="KEGG" id="tne:Tneu_1925"/>
    <dbReference type="eggNOG" id="arCOG04045">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014271_4_2_2"/>
    <dbReference type="OrthoDB" id="8674at2157"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00057"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004160">
        <property type="term" value="F:dihydroxy-acid dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:L-valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.50.30.80:FF:000001">
        <property type="entry name" value="Dihydroxy-acid dehydratase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.80">
        <property type="entry name" value="IlvD/EDD C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00012">
        <property type="entry name" value="IlvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050165">
        <property type="entry name" value="DHAD_IlvD/Edd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042096">
        <property type="entry name" value="Dihydro-acid_dehy_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004404">
        <property type="entry name" value="DihydroxyA_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020558">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056740">
        <property type="entry name" value="ILV_EDD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000581">
        <property type="entry name" value="ILV_EDD_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037237">
        <property type="entry name" value="IlvD/EDD_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00110">
        <property type="entry name" value="ilvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002068">
        <property type="entry name" value="PRK00911.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21000">
        <property type="entry name" value="DIHYDROXY-ACID DEHYDRATASE DAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21000:SF5">
        <property type="entry name" value="DIHYDROXY-ACID DEHYDRATASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24877">
        <property type="entry name" value="ILV_EDD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00920">
        <property type="entry name" value="ILVD_EDD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143975">
        <property type="entry name" value="IlvD/EDD N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52016">
        <property type="entry name" value="LeuD/IlvD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00886">
        <property type="entry name" value="ILVD_EDD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00887">
        <property type="entry name" value="ILVD_EDD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0001">2Fe-2S</keyword>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-0411">Iron-sulfur</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000089423" description="Dihydroxy-acid dehydratase">
        <location>
            <begin position="1"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="474"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="1">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="448"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="1">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00012"/>
        </source>
    </evidence>
    <sequence length="561" mass="59606" checksum="E00426A63F6D6C9B" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBR2</accession>
    <name>B1YBR2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0346</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349717.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBR2"/>
    <dbReference type="STRING" id="444157.Tneu_0346"/>
    <dbReference type="GeneID" id="6165328"/>
    <dbReference type="KEGG" id="tne:Tneu_0346"/>
    <dbReference type="eggNOG" id="arCOG04036">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_158399_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="131" mass="15292" checksum="110F95F3C29B274D" modified="2008-05-20" version="1">MRHREIPPGTLPFFLAYQTENREFFHIPHFKMYVISDLSPSSYTLSFIWYGVKIQGEKETAIEFTADNIPWVGRKTKFVLVLFPTEGGYQPLLRVEIPLGDAMFHWDRIAYAILQERLHNLLGDGYIVSQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBT2</accession>
    <name>B1YBT2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Carbonic anhydrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0366</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="2">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the beta-class carbonic anhydrase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349736.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBT2"/>
    <dbReference type="STRING" id="444157.Tneu_0366"/>
    <dbReference type="GeneID" id="6164855"/>
    <dbReference type="KEGG" id="tne:Tneu_0366"/>
    <dbReference type="eggNOG" id="arCOG02860">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_118421_0_0_2"/>
    <dbReference type="OrthoDB" id="24878at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004089">
        <property type="term" value="F:carbonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1050.10">
        <property type="entry name" value="Carbonic anhydrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001765">
        <property type="entry name" value="Carbonic_anhydrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036874">
        <property type="entry name" value="Carbonic_anhydrase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00484">
        <property type="entry name" value="Pro_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00947">
        <property type="entry name" value="Pro_CA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53056">
        <property type="entry name" value="beta-carbonic anhydrase, cab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR601765-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="182" mass="20387" checksum="C265819B77BD1278" modified="2008-05-20" version="1">MRLVITCMDYRLSEEVLRRVGPGDLVVRTAGANVRGVARSLAGLPVQEVLYLPHTDCAALKLVYSALSQGQPADPLVEEALVSQYRGRRPADLEELERLHVETQVAILRTLFPHARITVETIDVSKIRWPPRKPVYHLLKPQSRYTQDMIGAYIIQAFRREDVQPDIKVAQTLGLAPGVAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBU1</accession>
    <name>B1YBU1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cobaltochelatase</fullName>
            <ecNumber evidence="4">6.6.1.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0376</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Mg-chelatase subunit H family.</text>
    </comment>
    <dbReference type="EC" id="6.6.1.2" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349745.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBU1"/>
    <dbReference type="STRING" id="444157.Tneu_0376"/>
    <dbReference type="GeneID" id="6165388"/>
    <dbReference type="KEGG" id="tne:Tneu_0376"/>
    <dbReference type="eggNOG" id="arCOG03022">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002017_1_2_2"/>
    <dbReference type="OrthoDB" id="192131at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051116">
        <property type="term" value="F:cobaltochelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016851">
        <property type="term" value="F:magnesium chelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015995">
        <property type="term" value="P:chlorophyll biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10150">
        <property type="entry name" value="CobN_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011771">
        <property type="entry name" value="BchH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003672">
        <property type="entry name" value="CobN/Mg_chltase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02025">
        <property type="entry name" value="BchH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44119">
        <property type="entry name" value="MAGNESIUM-CHELATASE SUBUNIT CHLH, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44119:SF1">
        <property type="entry name" value="MAGNESIUM-CHELATASE SUBUNIT CHLH, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02514">
        <property type="entry name" value="CobN-Mg_chel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobN/magnesium chelatase" evidence="3">
        <location>
            <begin position="149"/>
            <end position="1173"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="616"/>
            <end position="646"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="1187" mass="134474" checksum="4C47C298EAEB8093" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="94" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBV8</accession>
    <name>B1YBV8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0394</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349762.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBV8"/>
    <dbReference type="STRING" id="444157.Tneu_0394"/>
    <dbReference type="GeneID" id="6164927"/>
    <dbReference type="KEGG" id="tne:Tneu_0394"/>
    <dbReference type="eggNOG" id="arCOG00202">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_2"/>
    <dbReference type="OrthoDB" id="35850at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042626">
        <property type="term" value="F:ATPase-coupled transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03225">
        <property type="entry name" value="ABC_cobalt_CbiO_domain1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015856">
        <property type="entry name" value="ABC_transpr_CbiO/EcfA_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050095">
        <property type="entry name" value="ECF_ABC_transporter_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43553:SF24">
        <property type="entry name" value="ENERGY-COUPLING FACTOR TRANSPORTER ATP-BINDING PROTEIN ECFA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43553">
        <property type="entry name" value="HEAVY METAL TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="1"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="223" mass="24545" checksum="18E1D1099FD25FD4" modified="2008-05-20" version="1">MRREVLKAVDVYFGYSEDVLTGVSLSVGEGQFVAVMGPTGSGKTTLLLVLAGLLKPRRGEVYFMGEPLEGQLQAARRQMGVVFQNPDDMFFNHTVRDEIAYTAVRIYGREEGLKLAEEAAKALGIEGLLDRPPYKLSGGQKRLVSLAAATAHRPRLLLLDEPTTYLDEDAYEVVVNYLAKLKAGGVSAVIATHDEELAVRLADSVYKLREGKLTPYTPRRKLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC04</accession>
    <name>B1YC04_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1943</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351277.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC04"/>
    <dbReference type="STRING" id="444157.Tneu_1943"/>
    <dbReference type="GeneID" id="6164578"/>
    <dbReference type="KEGG" id="tne:Tneu_1943"/>
    <dbReference type="eggNOG" id="arCOG05439">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1493054_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="190" mass="21207" checksum="B6255FA7507F78AE" modified="2008-05-20" version="1">MGNLHTARGVAMCRSCGFAAPGLDMCKITDTCVLCAREKLGDRCWGCPDKARCDLAVEGLRFLKTLEPKLDVYIDLGKRLTSELERYGRAEIGVAFLKNLMGLVNLLRREKKERAFPLWVAAVLREDVVPKLVRVPYVVKVDIHRPLLEFCAVFNCTGLEAPLNNLLNAVVSLSLIEKTADPARYFRLGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC08</accession>
    <name>B1YC08_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1947</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC08"/>
    <dbReference type="STRING" id="444157.Tneu_1947"/>
    <dbReference type="KEGG" id="tne:Tneu_1947"/>
    <dbReference type="eggNOG" id="arCOG04054">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1264625_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="86"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="215" mass="24363" checksum="3CAFE7F70D781C50" modified="2008-05-20" version="1">MARQEKKEAKLPTVRGKPVYIGGVLLVGVAEKGEFDIKRKKLVSIEVKDAGGTSYVLDTSNIRVKIAREYVDLDVAALPKFFEIKMREVNKMIEDLRRSRAELDKSYHKLEEALVKGVIGMDIYNEQIKRLQEREKRLRAACIDMEKSIASVGQSLAQLKAELEKKRERLEAKRLLDKLDESEAEELGKVLNTLGSINALSHLITSSIIQLRLIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC10</accession>
    <name>B1YC10_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1949</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351283.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC10"/>
    <dbReference type="STRING" id="444157.Tneu_1949"/>
    <dbReference type="GeneID" id="6164425"/>
    <dbReference type="KEGG" id="tne:Tneu_1949"/>
    <dbReference type="eggNOG" id="arCOG05441">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_958537_0_0_2"/>
    <dbReference type="OrthoDB" id="27083at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="295" mass="33709" checksum="3F26A60D82C43EA7" modified="2008-05-20" version="1">MDFSCFRRGCTTADHLSEFDYCTSRFGAERVKKALVDLAPEHMAVLQRFRLNWLSTKNPVYMFLSGSVVVDCIWEDSLCRHLEAIRSAGAADRAGSLYYLPYTLLSEEVVENLPLPEVSEEEYEIKKFFVVSLRGVSGEGEAVENLARFLEAAPVFLGRRVARVVRGVPHIPQLANRYTEKIDILLKSTDGALTGFGYMDVSKTHHLGFSKAKSLLLYGLDYVVVLHPYVDRAFHREVANRVKNRWDISEVGYAVFNPLEEELYFYKLPRPNRYLRMSASAQRQSSIIRSYIESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC65</accession>
    <name>B1YC65_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_2005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351338.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC65"/>
    <dbReference type="STRING" id="444157.Tneu_2005"/>
    <dbReference type="GeneID" id="6165468"/>
    <dbReference type="KEGG" id="tne:Tneu_2005"/>
    <dbReference type="eggNOG" id="arCOG05450">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2613771_0_0_2"/>
    <dbReference type="OrthoDB" id="24401at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13545">
        <property type="entry name" value="HTH_Crp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH crp-type" evidence="1">
        <location>
            <begin position="22"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="73" mass="8465" checksum="610224F8CE2A5A9A" modified="2008-05-20" version="1">MRDITANKLVEQIINLLREYGELSSADIAKMLGVKRRSVTAVLAKMRREGLVEYLGYCFGGRRCDTKWRLRMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCF4</accession>
    <name>B1YCF4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Rh family protein/ammonium transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0524</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ammonia transporter channel (TC 1.A.11.2) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349887.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCF4"/>
    <dbReference type="STRING" id="444157.Tneu_0524"/>
    <dbReference type="GeneID" id="6165818"/>
    <dbReference type="KEGG" id="tne:Tneu_0524"/>
    <dbReference type="eggNOG" id="arCOG04397">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_33_1_2"/>
    <dbReference type="OrthoDB" id="10960at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="entry name" value="Ammonium transporter AmtB like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001905">
        <property type="entry name" value="Ammonium_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43029:SF21">
        <property type="entry name" value="AMMONIUM TRANSPORTER 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43029">
        <property type="entry name" value="AMMONIUM TRANSPORTER MEP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111352">
        <property type="entry name" value="Ammonium transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="84"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="114"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="155"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="207"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="236"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="264"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="290"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="320"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="362"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium transporter AmtB-like" evidence="7">
        <location>
            <begin position="9"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="413" mass="43134" checksum="B6144E803B2123FA" modified="2008-05-20" version="1">MQVDVAATVWTALGGILVFLMIPAVGFLEAGLVRRSNVINAMMKGLLAVMVFFPIWFVVFPYYYGGVLQDGFYPTSQDAGVPAYVYGFFMGAFGSVTLAILFSGAPERLKFGGWLAFAVFFSAVQWPLVTSWVWANGFLANLGNYFGLEGLGVRDFAGGTVVHAYAALAGAVATALLGPTALRAVRKNGGDSVVAYKEAVEYKKAELPYAIVGTTLLFFGWFGFNGGSTIVVSPQTGYAIANTAVAGSLGGLIAALLARLGEGVWSPVMAISGVLAGLVAITPLAGYVELWAALLVGALSGAVAFYGTKLVERYIPVDDPVGSLPVHGFNGVLGSALVPVLASPDVSGGLKGLIYGGPAGWVLVQWLGMAIALVFVVATTAAFFYALVKLGFRVKPEEELVGLDMVDHGVARV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCI3</accession>
    <name>B1YCI3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Phosphate-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0553</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the PstS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349916.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCI3"/>
    <dbReference type="STRING" id="444157.Tneu_0553"/>
    <dbReference type="GeneID" id="6166158"/>
    <dbReference type="KEGG" id="tne:Tneu_0553"/>
    <dbReference type="eggNOG" id="arCOG00213">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034528_1_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042301">
        <property type="term" value="F:phosphate ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035435">
        <property type="term" value="P:phosphate ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13565">
        <property type="entry name" value="PBP2_PstS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005673">
        <property type="entry name" value="ABC_phos-bd_PstS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050962">
        <property type="entry name" value="Phosphate-bind_PstS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00975">
        <property type="entry name" value="3a0107s03"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42996">
        <property type="entry name" value="PHOSPHATE-BINDING PROTEIN PSTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42996:SF1">
        <property type="entry name" value="PHOSPHATE-BINDING PROTEIN PSTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12849">
        <property type="entry name" value="PBP_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002756">
        <property type="entry name" value="PstS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0813">Transport</keyword>
    <feature type="domain" description="PBP" evidence="5">
        <location>
            <begin position="40"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR002756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF12849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="393" mass="41941" checksum="367D1952C38B3574" modified="2008-05-20" version="1">MRVVLAAVVGAVAALLAVGAVFFPPKCLAASGGGGVALGVRGTLVGGGSSFVAPQMFAWSREFYRLSGGAAVVNYQSVGSGAGVAQLLERRLDFAASDVPLPRDRYAAVGGRVFQFPVAVGSIVVAYNVPEVAYGVTGRYLNLTAEVLALIYMGVVRQWCDVRIRELNPGLADRLPCRDIVVVHRSDGSGTTAAFTLFLSKAYPPWNSTVGWGLVVRWPVDAVGRGVGAKGNEGVAQAVLQNAYSIGYVEYAYWVKNRGRFDEVGGVAYVRNDNDGRFYFPTAESVSEAVSAGLERYLAKHGAPPGPGDDWNPVSVEFSNPPRGYPLVTFTYAVVWRDYSAEGYSGAGVKTRLLKAFFRWVLTEGQGSLVEGYIPLPREVAEVGLRAVEGVRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCL6</accession>
    <name>B1YCL6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0590</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349949.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCL6"/>
    <dbReference type="STRING" id="444157.Tneu_0590"/>
    <dbReference type="GeneID" id="6165545"/>
    <dbReference type="KEGG" id="tne:Tneu_0590"/>
    <dbReference type="eggNOG" id="arCOG07692">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_159098_0_0_2"/>
    <dbReference type="OrthoDB" id="24475at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="96" mass="11442" checksum="6AC7AFAF0A06F54B" modified="2008-05-20" version="1">MDERAVIEKLDKFLHAVRYDGFRTLFVLYFVNQRVKWADFIDTLDYGYLGPTFYTAAIRLEKLGLVERRRLDIKTYVRITDKGRKLVECLLPHVTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCR4</accession>
    <name>B1YCR4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, CopG/Arc/MetJ family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0638</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349997.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCR4"/>
    <dbReference type="STRING" id="444157.Tneu_0638"/>
    <dbReference type="GeneID" id="6165348"/>
    <dbReference type="KEGG" id="tne:Tneu_0638"/>
    <dbReference type="eggNOG" id="arCOG01009">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_202919_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22231">
        <property type="entry name" value="RHH_NikR_HicB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="entry name" value="Met repressor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002145">
        <property type="entry name" value="CopG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36215">
        <property type="entry name" value="BLL4998 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36215:SF1">
        <property type="entry name" value="BLL4998 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01402">
        <property type="entry name" value="RHH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="Ribbon-helix-helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ribbon-helix-helix protein CopG" evidence="1">
        <location>
            <begin position="10"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="54" mass="6241" checksum="03E271E9A084C376" modified="2008-05-20" version="1">MEKSREKMVLISFHVPQSYVDVLDELVKMGLYPSRSEAIRAALRELLSKYKLDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCR9</accession>
    <name>B1YCR9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0643</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350002.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCR9"/>
    <dbReference type="STRING" id="444157.Tneu_0643"/>
    <dbReference type="GeneID" id="6165343"/>
    <dbReference type="KEGG" id="tne:Tneu_0643"/>
    <dbReference type="eggNOG" id="arCOG05517">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_157006_0_0_2"/>
    <dbReference type="OrthoDB" id="25611at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="121" mass="12840" checksum="C7E230BA4C07C488" modified="2008-05-20" version="1">MSVAGIRFDYIHAERLGVPPPGAQLQMNVQIMIEGERAVKRGGVTEIPFTVSISSSPGVVTVTIRGVAAVQGDVDVKNPPPQVAGPIMQAALFEAALVMRELGFPPPLPVQTQTQQTPHYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCS1</accession>
    <name>B1YCS1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">Carbamate kinase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0645</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the carbamate kinase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350004.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCS1"/>
    <dbReference type="STRING" id="444157.Tneu_0645"/>
    <dbReference type="GeneID" id="6165314"/>
    <dbReference type="KEGG" id="tne:Tneu_0645"/>
    <dbReference type="eggNOG" id="arCOG00863">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076278_0_0_2"/>
    <dbReference type="OrthoDB" id="31128at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008804">
        <property type="term" value="F:carbamate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019546">
        <property type="term" value="P:L-arginine deiminase pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04235">
        <property type="entry name" value="AAK_CK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="entry name" value="Acetylglutamate kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003964">
        <property type="entry name" value="Carb_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30409">
        <property type="entry name" value="CARBAMATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30409:SF1">
        <property type="entry name" value="CARBAMATE KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000723">
        <property type="entry name" value="Carbamate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01469">
        <property type="entry name" value="CARBMTKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="Carbamate kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aspartate/glutamate/uridylate kinase" evidence="6">
        <location>
            <begin position="1"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="298" mass="31463" checksum="6B832EFF9721ACD6" modified="2008-05-20" version="1">MLVVVALGGNAFSRPGEPVSQEGHMRNVATAAQVVARIVKEGHRAVVTHGNGPQVGYFAELQKGREAFGLDALNAVTQGLLGYLIAQAIDKLLGAGMTAALVTRVEVDCRDPSAATPTKPIGPLYPEEAARELEARFGWRFAADPRGGWRRVVPSPTPVKVVEVDAIRRLVDAGFVVVAAGGGGVPICGGAGVEGVVDKDLTSSLLAVELGADLFMVLTDVDGIYLNYRRPGQRRLGVVAADELERYMSEGHFPPGSMGPKVRAVVDFVKRTGKRAAVGALEEGYEVFKGLRGTQVVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCS6</accession>
    <name>B1YCS6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350009.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCS6"/>
    <dbReference type="GeneID" id="6165238"/>
    <dbReference type="KEGG" id="tne:Tneu_0650"/>
    <dbReference type="eggNOG" id="arCOG05518">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_156344_0_0_2"/>
    <dbReference type="OrthoDB" id="28192at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="129" mass="14122" checksum="DDD4C4F5C0E78BDA" modified="2008-05-20" version="1">MEYIALTRGPARGLYYIAAGAPRCGQIRVRLAELPTDAEPPFKARPMKYGVVVEKTDLESYLLQHIDQLIEGEIRGGVLDGVVCNRRVAIRVLDPTISGPVLAAIPVTRIGRFPPKAALTLLAYKLQLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCT1</accession>
    <name>B1YCT1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">NADH-ubiquinone oxidoreductase chain 4L</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0655</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCT1"/>
    <dbReference type="STRING" id="444157.Tneu_0655"/>
    <dbReference type="KEGG" id="tne:Tneu_0655"/>
    <dbReference type="eggNOG" id="arCOG05519">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2340345_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.3510">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039428">
        <property type="entry name" value="NUOK/Mnh_C1-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00420">
        <property type="entry name" value="Oxidored_q2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="26"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="53"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="95" mass="9839" checksum="30ED5A36D396C752" modified="2008-05-20" version="1">MATAVGLVLILLGLYGIAVTRNLVRILISLELATVGAFAALAPVAVKDPASALYGVLFLVMASVSEAAILAALIYRNYSLTKDTDVSSITSGREV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCT8</accession>
    <name>B1YCT8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0662</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350021.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCT8"/>
    <dbReference type="STRING" id="444157.Tneu_0662"/>
    <dbReference type="GeneID" id="6165270"/>
    <dbReference type="KEGG" id="tne:Tneu_0662"/>
    <dbReference type="eggNOG" id="arCOG01262">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_1_2"/>
    <dbReference type="OrthoDB" id="24596at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05233">
        <property type="entry name" value="SDR_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051122">
        <property type="entry name" value="SDR_DHRS6-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43477">
        <property type="entry name" value="DIHYDROANTICAPSIN 7-DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43477:SF1">
        <property type="entry name" value="DIHYDROANTICAPSIN 7-DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13561">
        <property type="entry name" value="adh_short_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="224" mass="23701" checksum="31240624AC3BB637" modified="2008-05-20" version="1">MRIVVTGASGGIGGTLVRLAKSRGDYVVGISRERSDADVHYRCDVLDVACLRGVAEEVGRVDGLALAHGHGEEGLWKRDVASLSAEDLLDVFRVDVVGSFNAVKAFLPALGPSASVVLVASTPGIVGDRYGIPYAVAKGALIALARSLAKALAPIRVNAVALGPIETRWTSWVTPEELDEFRSRTVLRRLGRPEEAAEAIYWLLSPASSYVTGHVLVVDGGESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCU0</accession>
    <name>B1YCU0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0664</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350023.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCU0"/>
    <dbReference type="GeneID" id="6165150"/>
    <dbReference type="KEGG" id="tne:Tneu_0664"/>
    <dbReference type="eggNOG" id="arCOG01118">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_143279_0_0_2"/>
    <dbReference type="OrthoDB" id="14763at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43704">
        <property type="entry name" value="BSR5907 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43704:SF1">
        <property type="entry name" value="BSR5907 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="Dimeric alpha+beta barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="7"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12802"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="156" mass="17860" checksum="3609E6101E46D128" modified="2008-05-20" version="1">MTEEVKLTDRQYQLLNHLLQRAQPMRVYTVYGDQDEIARELGMTRQALAIHLKRLKELGLVRTGREFVDITEKAVKLLKGQSSDVIILVKIEPKYREKVYEATKKLPIEKAMRLAGDYDLAVITQETVLDKVLDAVNNMEGVKETKTFISIGAIKE</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCV9</accession>
    <name>TRM1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA (guanine(26)-N(2))-dimethyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.216</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA 2,2-dimethylguanosine-26 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA(guanine-26,N(2)-N(2)) methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA(m(2,2)G26)dimethyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">trm1</name>
        <name type="ordered locus">Tneu_0683</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>guanosine(26) in tRNA + 2 S-adenosyl-L-methionine = N(2)-dimethylguanosine(26) in tRNA + 2 S-adenosyl-L-homocysteine + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:43140"/>
            <dbReference type="Rhea" id="RHEA-COMP:10359"/>
            <dbReference type="Rhea" id="RHEA-COMP:10360"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="ChEBI" id="CHEBI:74513"/>
            <dbReference type="EC" id="2.1.1.216"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.216" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350042.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCV9"/>
    <dbReference type="SMR" id="B1YCV9"/>
    <dbReference type="STRING" id="444157.Tneu_0683"/>
    <dbReference type="GeneID" id="6165286"/>
    <dbReference type="KEGG" id="tne:Tneu_0683"/>
    <dbReference type="eggNOG" id="arCOG01219">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010862_5_1_2"/>
    <dbReference type="OrthoDB" id="372177at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0160104">
        <property type="term" value="F:tRNA (guanine(26)-N2)-dimethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002940">
        <property type="term" value="P:tRNA N2-guanine methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00290">
        <property type="entry name" value="tRNA_dimethyltr_TRM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002905">
        <property type="entry name" value="Trm1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022923">
        <property type="entry name" value="TRM1_arc_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10631">
        <property type="entry name" value="N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10631:SF3">
        <property type="entry name" value="TRNA (GUANINE(26)-N(2))-DIMETHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02005">
        <property type="entry name" value="TRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51626">
        <property type="entry name" value="SAM_MT_TRM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0489">Methyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <keyword id="KW-0820">tRNA-binding</keyword>
    <feature type="chain" id="PRO_1000114983" description="tRNA (guanine(26)-N(2))-dimethyltransferase">
        <location>
            <begin position="1"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="domain" description="Trm1 methyltransferase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00290"/>
        </source>
    </evidence>
    <sequence length="351" mass="39045" checksum="4669560313B152E6" modified="2008-05-20" version="1">MNLVLRREGAVQFYAPDPQRYGSIYSAPVFYNPAMEKNRTLSVLLLRTLGGGLTVCEPLSGTGVRGIRYAVESKAVARLVLNDISRDAAELIKKNLELNGVDGEVYNDDANVLLHRLKNVCDVVDIDPFGSPAPYIHAAFRALRDEGLLCATATDTAVLVGRYPRKCLRRYWSTVRKTPFYIELGLRNLVGFIARVAASEDFSIRPLMSYWEGHYFRTCVAVARGARDADDALQNVGYVVYRRGMRQTTQLPDESSSGPLWLGPLGDPLIMHQMAQHGVYSDFLGVLEQEYSIEAPWHYRLPEFAVEGVSPTLAEALDLLRRSGIYATATHMAKDGFKADAGYGEVKRALF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCX1</accession>
    <name>B1YCX1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Replication factor C small subunit</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Clamp loader small subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0695</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the activator 1 small subunits family. RfcS subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350054.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCX1"/>
    <dbReference type="STRING" id="444157.Tneu_0695"/>
    <dbReference type="GeneID" id="6165489"/>
    <dbReference type="KEGG" id="tne:Tneu_0695"/>
    <dbReference type="eggNOG" id="arCOG00469">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042324_2_1_2"/>
    <dbReference type="OrthoDB" id="7928at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005663">
        <property type="term" value="C:DNA replication factor C complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003689">
        <property type="term" value="F:DNA clamp loader activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18140">
        <property type="entry name" value="HLD_clamp_RFC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000952">
        <property type="entry name" value="Replication factor C subunit 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.272.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008921">
        <property type="entry name" value="DNA_pol3_clamp-load_cplx_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050238">
        <property type="entry name" value="DNA_Rep/Repair_Clamp_Loader"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013748">
        <property type="entry name" value="Rep_factorC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047854">
        <property type="entry name" value="RFC_lid"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001679">
        <property type="entry name" value="PRK00440.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11669">
        <property type="entry name" value="REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11669:SF20">
        <property type="entry name" value="REPLICATION FACTOR C SUBUNIT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21960">
        <property type="entry name" value="RCF1-5-like_lid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08542">
        <property type="entry name" value="Rep_fac_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48019">
        <property type="entry name" value="post-AAA+ oligomerization domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0235">DNA replication</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="7">
        <location>
            <begin position="36"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00031749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="319" mass="36158" checksum="84D0F4CF9A90F77A" modified="2008-05-20" version="1">MSELFWFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPIKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRVVMVRFNPLPKDAVIARLRYIAENEGIKASDDALETIFEFTQGDMRKAINALQIAAATSREITEETVAKALGLVSPKLLRETLHEAVRGSFSKAMTQIYGFVVDGGVGELEILKQIHREVLRLDVPEYVKPDLAYIVAEAHYATLRGARGLAQIYGALAKVRRLLKHAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCX2</accession>
    <name>B1YCX2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0696</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350055.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCX2"/>
    <dbReference type="STRING" id="444157.Tneu_0696"/>
    <dbReference type="GeneID" id="6165532"/>
    <dbReference type="KEGG" id="tne:Tneu_0696"/>
    <dbReference type="eggNOG" id="arCOG05526">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1782560_0_0_2"/>
    <dbReference type="OrthoDB" id="28274at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="6"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="143" mass="16546" checksum="79CED3E59CC57F71" modified="2008-05-20" version="1">MECEDTKKILERLDEIEILIRNLLEEVRELKRGRAVQAPRGLVEVLREKKFMPVSEVKSRQALREAMERGLVLVLRDEGANRDVVVLKEAARALLDKLPISVKDSEKLPSRDYELLQILNRLGYVLLKGGQYIKTDLAEEFYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCZ0</accession>
    <name>B1YCZ0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">DUF4443 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0714</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350073.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCZ0"/>
    <dbReference type="STRING" id="444157.Tneu_0714"/>
    <dbReference type="GeneID" id="6165670"/>
    <dbReference type="KEGG" id="tne:Tneu_0714"/>
    <dbReference type="eggNOG" id="arCOG02103">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1393643_0_0_2"/>
    <dbReference type="OrthoDB" id="27734at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.30">
        <property type="entry name" value="GAD-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029349">
        <property type="entry name" value="DUF4443"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004115">
        <property type="entry name" value="GAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054039">
        <property type="entry name" value="PH0730-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14544">
        <property type="entry name" value="DUF4443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22167">
        <property type="entry name" value="PH0730-like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55261">
        <property type="entry name" value="GAD domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PH0730-like N-terminal" evidence="6">
        <location>
            <begin position="11"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4443" evidence="5">
        <location>
            <begin position="104"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF14544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF22167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="9">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="188" mass="20132" checksum="5F0172E057FF8FB9" modified="2008-05-20" version="1">MKSREIAYLQMLAVLAISNTPRGRKNLAEELKIGEGVVRTLLEGGRDLGHVAVLKGGVKITEAGSEFLREALALCGITKMLPLDDAKKILCGRRCMGFITMEGVKDVIGLRDSLVRLGACGALIAVPREGKLALPPLDDPLEKYDKRLAETLKPYVEDGGSVVIACGDTFSDALGLIALRCSQLVAKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCZ2</accession>
    <name>B1YCZ2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0716</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350075.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCZ2"/>
    <dbReference type="STRING" id="444157.Tneu_0716"/>
    <dbReference type="GeneID" id="6165539"/>
    <dbReference type="KEGG" id="tne:Tneu_0716"/>
    <dbReference type="eggNOG" id="arCOG05532">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1691600_0_0_2"/>
    <dbReference type="OrthoDB" id="28678at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="150" mass="16431" checksum="04506EE17A9F8E4A" modified="2008-05-20" version="1">MTKLLILAIVAVAAVSAMLPVENLVSDAYRPPPNKVVTPSGIAVVDAPLWLYFWRVTITLTALLFAAIVATFFTRSNARVRWTLAALSVSIAVFHYLTLLFTSSPPGYGIAIYPLFYTISVKGVTQVYLDIGQVLILYAVYNVYLANKLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCZ3</accession>
    <name>B1YCZ3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptidase M50</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0717</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCZ3"/>
    <dbReference type="STRING" id="444157.Tneu_0717"/>
    <dbReference type="KEGG" id="tne:Tneu_0717"/>
    <dbReference type="eggNOG" id="arCOG02834">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="eggNOG" id="arCOG04064">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_666698_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031293">
        <property type="term" value="P:membrane protein intracellular domain proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd05709">
        <property type="entry name" value="S2P-M50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001193">
        <property type="entry name" value="MBTPS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008915">
        <property type="entry name" value="Peptidase_M50"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13325:SF3">
        <property type="entry name" value="MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE-2 PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13325">
        <property type="entry name" value="PROTEASE M50 MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE 2 PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02163">
        <property type="entry name" value="Peptidase_M50"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01000">
        <property type="entry name" value="SREBPS2PTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="PDZ domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="78"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="158"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="195"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="418"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="464"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase M50" evidence="6">
        <location>
            <begin position="131"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase M50" evidence="6">
        <location>
            <begin position="411"/>
            <end position="476"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="497" mass="53241" checksum="D2375F1344C882B7" modified="2008-05-20" version="1">MFLASWVLLVGLVYLVDKRAVRYFVAIYWKSERLVAYVARFTEKLSFIPLRAYLAAVVVLFLMPVFLAMPLVRPDGQVQLLSGFLYMLVGGTLSAIKSLAGGRPVEEAAAHSAGVTPIVPGVTLPWDQLPYLAVAIVVSVVLHELMHGYAALRYGIPVKSVGVFSLLYVFSGAFVEPDEESFKKASTEAKVAVLASGVAANVVLAVAAMALGILGAWAGLQGAVFGVSALGVNTGDRVLEIHGCGMSERVYTPDDFLTKVNVLAGMGPLLGVNKTVSCRPGDKVTLVAGSWLGRYSVEVDYVNFTTPPRVNWLYVEGSLYKGGVRAGDVIKRVVGCGVEAEVNTSGQLISALQLMKQRCKPGDVISVDVERNGTLATFNITLVEKGGSIFFGLGPGSLPLWGYDEGPIRRSQLYNTDFAKLIFWMIVVNYGLAMLNALPIYPLDGGQLLAAVAQRKLGEKNGKALVTAVTWVLAAMLVFNAALGVLGEQYKILQSIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCZ5</accession>
    <name>B1YCZ5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF2208 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0719</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350078.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCZ5"/>
    <dbReference type="STRING" id="444157.Tneu_0719"/>
    <dbReference type="GeneID" id="6165554"/>
    <dbReference type="KEGG" id="tne:Tneu_0719"/>
    <dbReference type="eggNOG" id="arCOG04319">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1122678_0_0_2"/>
    <dbReference type="OrthoDB" id="28331at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009198">
        <property type="entry name" value="UCP014484_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09973">
        <property type="entry name" value="DUF2208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="227" mass="25892" checksum="B3F0A823B397BADF" modified="2008-05-20" version="1">MRRVLISAVSILAFATILTFFPSDYFTAVLLYFVLFFAVSIFIGVRTYRRGIANVQEISRGKPLMEIDEKEVDKLLEKDKALMDEYRKFARASFMPLLILPGFILLATFLFPTLPHVAETSLGASIGPTAARFISYVAIFSVFSAISMLAFKPPVVPRIVRSLKVYEAGVVIDKTLGLKAPLEVSEYKINEERRFIEFKLNNQVFRIYHRDVKELDAVLSRLLRLKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD17</accession>
    <name>B1YD17_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protein synthesis factor GTP-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0741</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350100.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD17"/>
    <dbReference type="STRING" id="444157.Tneu_0741"/>
    <dbReference type="GeneID" id="6165205"/>
    <dbReference type="KEGG" id="tne:Tneu_0741"/>
    <dbReference type="eggNOG" id="arCOG01562">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012821_2_0_2"/>
    <dbReference type="OrthoDB" id="30874at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04165">
        <property type="entry name" value="GTPBP1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001865">
        <property type="entry name" value="GTP-binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050055">
        <property type="entry name" value="EF-Tu_GTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035531">
        <property type="entry name" value="GTPBP1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43721">
        <property type="entry name" value="ELONGATION FACTOR TU-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43721:SF9">
        <property type="entry name" value="GTP-BINDING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="3">
        <location>
            <begin position="106"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="519" mass="56027" checksum="5F597F86554DEF94" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD41</accession>
    <name>B1YD41_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0765</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350124.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD41"/>
    <dbReference type="STRING" id="444157.Tneu_0765"/>
    <dbReference type="GeneID" id="6164559"/>
    <dbReference type="KEGG" id="tne:Tneu_0765"/>
    <dbReference type="eggNOG" id="arCOG00307">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1444723_0_0_2"/>
    <dbReference type="OrthoDB" id="27591at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="PHP domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="176" mass="19715" checksum="111FE43D65FC3060" modified="2008-05-20" version="1">MASVVRRGFVEWDLAAATPEVEKALWEVGVRAAVLRRDVETVLLAPVVRGVDVRWAEAESRDRFNAYVYREDVQVIRVNPHTPLTRDQVRAAARYGKYIELPLKPLLADVPLLARWLEVLEPDVVVFSTPVEELDDVKSPLDVAALLVEVGGDPSWRRPILNSLGILAELISERDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD52</accession>
    <name>B1YD52_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DOD-type homing endonuclease domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0776</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD52"/>
    <dbReference type="KEGG" id="tne:Tneu_0776"/>
    <dbReference type="eggNOG" id="arCOG03154">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1259145_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.28.10">
        <property type="entry name" value="Homing endonucleases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027434">
        <property type="entry name" value="Homing_endonucl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004042">
        <property type="entry name" value="Intein_endonuc_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004860">
        <property type="entry name" value="LAGLIDADG_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14528">
        <property type="entry name" value="LAGLIDADG_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55608">
        <property type="entry name" value="Homing endonucleases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50819">
        <property type="entry name" value="INTEIN_ENDONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DOD-type homing endonuclease" evidence="2">
        <location>
            <begin position="33"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="219" mass="24766" checksum="25A3A2B71388A969" modified="2008-05-20" version="1">MGKRPGPAEAPKAVAPTGKLTPSTKDMDWRLYLCGLIAADGHLDCRGEITLAQKRRDFIDTIATIMKTNGIDIASIFYDRKAGVWKLKTRDKDFYRYLINNGLKCGRKSSEINPPAVEPTAGLPYVIGFIDGDGWVEQITKKYRSRTYTYLRVGLKTKSKALRDWIAEVLKANGIRANTADKKDGYEIHIDTIEAWTVAKMLLNPTHHERLKQIRDSRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="34" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD54</accession>
    <name>B1YD54_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0778</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350137.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD54"/>
    <dbReference type="GeneID" id="6164667"/>
    <dbReference type="KEGG" id="tne:Tneu_0778"/>
    <dbReference type="HOGENOM" id="CLU_2821065_0_0_2"/>
    <dbReference type="OrthoDB" id="48772at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="66" mass="7545" checksum="046A18C049B998C4" modified="2008-05-20" version="1">MLRRGDVCPRCGRAISYFHYWRKGSRVYVSAVHYLGRSGGKKIIEKCYLGSYSAEEAERLFGVPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD81</accession>
    <name>B1YD81_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0805</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD81"/>
    <dbReference type="STRING" id="444157.Tneu_0805"/>
    <dbReference type="KEGG" id="tne:Tneu_0805"/>
    <dbReference type="eggNOG" id="arCOG00739">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1243066_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36216:SF1">
        <property type="entry name" value="HTH ARSR-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36216">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR, TRMB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="124"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="223" mass="23714" checksum="FCF274998C7DF54E" modified="2008-05-20" version="1">MDVNITVFLVLAPLAAWMYPVYVPPNSTAYIHADLPPALCNVTGTLQIDKPTTVACVNTALQPAPLRGSLSVEYPTPPPQPPPPAPEAPIVAVAAGAAAAAGLSHLASNRRELLAAPVVAIAARVKRAVAEDPARREILNVVEKMGAATLSQIAKATGRGWGAVQWHLYVLEREGRVRSVRIGPFTYYYVNPRAAAEVILSSVDPETLSPEDREKLDLMASSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDA0</accession>
    <name>B1YDA0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11 12">Homocitrate synthase</fullName>
            <shortName evidence="11">HCS</shortName>
            <ecNumber evidence="3 11 12">2.3.3.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Tneu_0826</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the aldol-type condensation of 2-oxoglutarate with acetyl-CoA to yield homocitrate. Carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>acetyl-CoA + 2-oxoglutarate + H2O = (2R)-homocitrate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12929"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:58884"/>
            <dbReference type="EC" id="2.3.3.14"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="10">
            <dbReference type="Rhea" id="RHEA:12930"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="11">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 11">Amino-acid biosynthesis; L-lysine biosynthesis via AAA pathway; L-alpha-aminoadipate from 2-oxoglutarate: step 1/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the alpha-IPM synthase/homocitrate synthase family. Homocitrate synthase LYS20/LYS21 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.14" evidence="3 11 12"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDA0"/>
    <dbReference type="STRING" id="444157.Tneu_0826"/>
    <dbReference type="KEGG" id="tne:Tneu_0826"/>
    <dbReference type="eggNOG" id="arCOG02092">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022158_4_0_2"/>
    <dbReference type="UniPathway" id="UPA00033">
        <property type="reaction ID" value="UER00028"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003852">
        <property type="term" value="F:2-isopropylmalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004410">
        <property type="term" value="F:homocitrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:L-leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019878">
        <property type="term" value="P:lysine biosynthetic process via aminoadipic acid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02222">
        <property type="entry name" value="Homocitr_synth_fung_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050073">
        <property type="entry name" value="2-IPM_HCS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002034">
        <property type="entry name" value="AIPM/Hcit_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011872">
        <property type="entry name" value="Homocitrate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054691">
        <property type="entry name" value="LeuA/HCS_post-cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02146">
        <property type="entry name" value="LysS_fung_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002085">
        <property type="entry name" value="PRK00915.1-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10277:SF63">
        <property type="entry name" value="HOMOCITRATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10277">
        <property type="entry name" value="HOMOCITRATE SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22617">
        <property type="entry name" value="HCS_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51569">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="Dimeric alpha+beta barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00816">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8 11" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="7 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9 11" id="KW-0464">Manganese</keyword>
    <keyword evidence="6 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="13">
        <location>
            <begin position="1"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="11">
        <location>
            <position position="272"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>2-oxoglutarate</name>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>2-oxoglutarate</name>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>2-oxoglutarate</name>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00048363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="NCBIfam" id="TIGR02146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB39763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="448" mass="49114" checksum="6B7E393194D2A0D7" modified="2008-05-20" version="1">MFSEEWRVRIAKALSDIGVGMVEVGDPNVAPDIKSAIKKIVGLKKQGEIKSDIVVHSRAVKQDLETAASLEPDRVAVFYGVSDIHLKYKHKKSREEALQIIAEMVSLVKSHGVSVRFTAEDASRADLDYLVEVVKTAYQAGADRVSIADTVGVFTPDRAREVFAKIKAAVPGVKLDIHAHNDFGMAVANSLAAVEGGADVVHTTVNGLGERAGITPLQAFAAAYYYHKGVKLIKLEKLPEITAMVEAASGITIMPTFPIVGENVFTHKAGVHQAGVIANPETYEPIPPEVVGRTRDFSLDKYSGRRAIQYRLERMGISVPPEVVDKLVEEVKRINARRLRDDDLLEILEKITNTAYRARVNRHIEAYVWLKVANNVYTTSVARRVAAIKNVVSVAEVTGDYDIIVKVVAENTEELNQVIESIREVKGVHSTLTSLVLKELPTNAPLSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDE1</accession>
    <name>B1YDE1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0867</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350224.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDE1"/>
    <dbReference type="GeneID" id="6164679"/>
    <dbReference type="KEGG" id="tne:Tneu_0867"/>
    <dbReference type="eggNOG" id="arCOG07064">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1286392_0_0_2"/>
    <dbReference type="OrthoDB" id="375155at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="180" mass="19976" checksum="3718930A2F9DAEF0" modified="2008-05-20" version="1">MGWSRIVTREGWAVIKPGPALAVWPPIPVPRAKLPLVSEGKVRAVINYVTLAKDTLMPPKFIIRAGDRAYEIQLVQMYEAYGLVEAVPHLAMVNCWSDRCDLSPLYAFAYPAGVWEVVNGYVNAEVEERWRPSDRLPGPNALRVLGDPKLARCLAKGRRADCGEPLDDAVPLVSHLIPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDE5</accession>
    <name>B1YDE5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">GIY-YIG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0871</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350228.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDE5"/>
    <dbReference type="STRING" id="444157.Tneu_0871"/>
    <dbReference type="GeneID" id="6164502"/>
    <dbReference type="KEGG" id="tne:Tneu_0871"/>
    <dbReference type="eggNOG" id="arCOG00463">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115699_2_0_2"/>
    <dbReference type="OrthoDB" id="17296at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd10441">
        <property type="entry name" value="GIY-YIG_COG1833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002837">
        <property type="entry name" value="DUF123"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37460">
        <property type="entry name" value="ENDONUCLEASE III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37460:SF1">
        <property type="entry name" value="ENDONUCLEASE III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01986">
        <property type="entry name" value="DUF123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="131" mass="14323" checksum="0F0EC7853372C010" modified="2008-05-20" version="1">MSRASHRLPTAPRLSYLVFFKCPSQEVDTGAARFKLEEGVYAYVGSCGVSCLRRVVRHLSRPAARRWHVDYLQCDALYAVVTPLAEAELARRLAGGCTAVARFGSTDDPGAPGHLFRCDAAEALRYAGFTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDE7</accession>
    <name>B1YDE7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase S16 lon domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0873</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350230.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDE7"/>
    <dbReference type="STRING" id="444157.Tneu_0873"/>
    <dbReference type="MEROPS" id="S16.A12"/>
    <dbReference type="GeneID" id="6164525"/>
    <dbReference type="KEGG" id="tne:Tneu_0873"/>
    <dbReference type="eggNOG" id="arCOG01937">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_488884_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008269">
        <property type="entry name" value="Lon_proteolytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027065">
        <property type="entry name" value="Lon_Prtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribsml_uS5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10046">
        <property type="entry name" value="ATP DEPENDENT LON PROTEASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05362">
        <property type="entry name" value="Lon_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00830">
        <property type="entry name" value="ENDOLAPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="530"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="domain" description="Lon proteolytic" evidence="3">
        <location>
            <begin position="31"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="550" mass="58788" checksum="AB7893EAD6B31192" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDG5</accession>
    <name>B1YDG5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0891</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDG5"/>
    <dbReference type="STRING" id="444157.Tneu_0891"/>
    <dbReference type="KEGG" id="tne:Tneu_0891"/>
    <dbReference type="eggNOG" id="arCOG05700">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1207674_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="234" mass="25339" checksum="950A3C31CE049EE1" modified="2008-05-20" version="1">MFLDVASFNTPCTVVVGVSSGRAVYLEVESGRRVEEHVGVDVDSVEPRADGDFLAGHVAFTSFATTIVKAVALRRPAYVLDYGGLRPLPQRAVAVSNVKAREFGAWEQVWNKPVYLSASGATVVVGASRAGSLLHINAVPSDVELAKRIWATAGVLQRAGELSLNCTCRLGLMPYEVFVSRGNRYVVAKFYLNASSPRSRRAFFIAGEGGNVVERREVDVGEAEVVAYEFIKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDM1</accession>
    <name>B1YDM1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">7-carboxy-7-deazaguanine synthase</fullName>
            <shortName evidence="8">CDG synthase</shortName>
            <ecNumber evidence="8">4.3.99.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Archaeosine biosynthesis protein QueE</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">queE</name>
        <name evidence="10" type="ordered locus">Tneu_0949</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>6-carboxy-5,6,7,8-tetrahydropterin + H(+) = 7-carboxy-7-carbaguanine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:27974"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:61032"/>
            <dbReference type="ChEBI" id="CHEBI:61036"/>
            <dbReference type="EC" id="4.3.99.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </cofactor>
        <text evidence="8">Binds 1 S-adenosyl-L-methionine per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="8">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8">Purine metabolism; 7-cyano-7-deazaguanine biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the radical SAM superfamily. 7-carboxy-7-deazaguanine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.3.99.3" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350304.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDM1"/>
    <dbReference type="STRING" id="444157.Tneu_0949"/>
    <dbReference type="GeneID" id="6164284"/>
    <dbReference type="KEGG" id="tne:Tneu_0949"/>
    <dbReference type="eggNOG" id="arCOG02173">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066739_2_4_2"/>
    <dbReference type="OrthoDB" id="371936at2157"/>
    <dbReference type="UniPathway" id="UPA00391"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016840">
        <property type="term" value="F:carbon-nitrogen lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904047">
        <property type="term" value="F:S-adenosyl-L-methionine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00917">
        <property type="entry name" value="QueE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024924">
        <property type="entry name" value="7-CO-7-deazaguanine_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42836">
        <property type="entry name" value="7-CARBOXY-7-DEAZAGUANINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42836:SF1">
        <property type="entry name" value="7-CARBOXY-7-DEAZAGUANINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000370">
        <property type="entry name" value="QueE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 8" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5 8" id="KW-0408">Iron</keyword>
    <keyword evidence="6 8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="9">
        <location>
            <begin position="18"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="12"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="37"/>
            <end position="39"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="120"/>
            <end position="122"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="216" mass="24207" checksum="2CDB4D9228ED86C8" modified="2008-05-20" version="1">MKLRVLEIFASLQGEGVNLGRPAVFIRLAGCPIRCRYCDTKYSWDPLGGEELDAEEVVRRAAAHGPLGHVVITGGEPLIWRNLHELACPLRRLGTVEVETSGVYPPTPQLDACVDFYDVSPKLSNAGVEAPLHPHYPRSPKAWFKFVVGGVEDVEEAARYVERHGIPRDRVFLMPLAETPEQHAEVLRRIWDAAVEHRLRVTPRLHVEAWGNARGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDM3</accession>
    <name>B1YDM3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SufBD protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0951</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the iron-sulfur cluster assembly SufBD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350306.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDM3"/>
    <dbReference type="STRING" id="444157.Tneu_0951"/>
    <dbReference type="GeneID" id="6164590"/>
    <dbReference type="KEGG" id="tne:Tneu_0951"/>
    <dbReference type="eggNOG" id="arCOG01715">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026231_0_1_2"/>
    <dbReference type="OrthoDB" id="372168at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055346">
        <property type="entry name" value="Fe-S_cluster_assembly_SufBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000825">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037284">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30508">
        <property type="entry name" value="FES CLUSTER ASSEMBLY PROTEIN SUF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30508:SF1">
        <property type="entry name" value="UPF0051 PROTEIN ABCI8, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01458">
        <property type="entry name" value="SUFBD_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101960">
        <property type="entry name" value="Stabilizer of iron transporter SufD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SUF system FeS cluster assembly SufBD core" evidence="2">
        <location>
            <begin position="146"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00043967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="398" mass="42697" checksum="828C531DF1474580" modified="2008-05-20" version="1">MASRGWLEEVRERAKAALGRPAPYGPDVDVAQFGDGGGPAGEGAVAEAAGRVGVSAGAPAYYIQGDNAYFRYLSRLPGVEVYRVEEFADAHPDLAREYLWRLVPPDLDKYTAVAALRGVGGYVVRVKAGAKVREPVLACLSIVRGGLQAPHNVVVVEEGAEAVVYTGCVIAPEAVGLHAAVSEFYVLRGAKLRFIMVHSWARAAHVRPRTGVLVEEGGEYVEYYANLQEVDSLQTSPRIVLKDGARAHATSVLLGLGRAKIDVGTTAVLEGDGAAAELTTRALAADSSSVVMRALVEAYKPSRGHVECSGLLLSDGARAVTVPQLAAYHRDAALTHEASIGRLAEEEINYLMAKGFTYEEAVSILVRGFVTTDIHRYLPEQARRYVENIEKLVAERAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDM9</accession>
    <name>B1YDM9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 13">Delta-aminolevulinic acid dehydratase</fullName>
            <ecNumber evidence="3 13">4.2.1.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Tneu_0957</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8 13">
            <text>2 5-aminolevulinate = porphobilinogen + 2 H2O + H(+)</text>
            <dbReference type="Rhea" id="RHEA:24064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58126"/>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <dbReference type="EC" id="4.2.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Homooctamer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 14">Belongs to the ALAD family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.24" evidence="3 13"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350312.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDM9"/>
    <dbReference type="STRING" id="444157.Tneu_0957"/>
    <dbReference type="GeneID" id="6164519"/>
    <dbReference type="KEGG" id="tne:Tneu_0957"/>
    <dbReference type="eggNOG" id="arCOG04300">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035731_0_0_2"/>
    <dbReference type="OrthoDB" id="8493at2157"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004655">
        <property type="term" value="F:porphobilinogen synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00384">
        <property type="entry name" value="ALAD_PBGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.70:FF:000019">
        <property type="entry name" value="Delta-aminolevulinic acid dehydratase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001731">
        <property type="entry name" value="ALAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030656">
        <property type="entry name" value="ALAD_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006762">
        <property type="entry name" value="PRK09283.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11458">
        <property type="entry name" value="DELTA-AMINOLEVULINIC ACID DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11458:SF0">
        <property type="entry name" value="DELTA-AMINOLEVULINIC ACID DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00490">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001415">
        <property type="entry name" value="Porphbilin_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00144">
        <property type="entry name" value="DALDHYDRTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01004">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51569">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00169">
        <property type="entry name" value="D_ALA_DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="6 13 15" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 13" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="202"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="255"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="212"/>
        </location>
        <ligand>
            <name>5-aminolevulinate</name>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>5-aminolevulinate</name>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="282"/>
        </location>
        <ligand>
            <name>5-aminolevulinate</name>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="321"/>
        </location>
        <ligand>
            <name>5-aminolevulinate</name>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001415-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001415-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR001415-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR001415-5"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU000515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU004161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB39892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="336" mass="36806" checksum="03F59D7C0D33935F" modified="2008-05-20" version="1">MRYPAARPRRLRTSKIVRDAVAETALDPGDFIYPIFVKEGPGPEAIPTMPGQHRWPVGEELVKHVEEALALGVNKFILFGVVPEEQKDPHGSRGYDPEGPVPKALRLLKETFGDKALLFADVCLCEYTDHGHCGVVETAGGRWHVDNDKTIKLYAKEALVYADAGADFVAPSGMMDGQVAEIRKALDAHGFHHVGIMAYSAKYASAFYGPFRTAAASAPKFGDRRTYQMDPRNAHEALKEVAMDLEEGADIVMVKPALAYLDVIRLVKQHYPWAPLAAYNVSGEYAMVKAAAAAGYIDEKVTTLEILTAIKRAGADLILTYHAPEAAKWLKDGTPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDP8</accession>
    <name>B1YDP8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0976</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350331.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDP8"/>
    <dbReference type="STRING" id="444157.Tneu_0976"/>
    <dbReference type="GeneID" id="6164584"/>
    <dbReference type="KEGG" id="tne:Tneu_0976"/>
    <dbReference type="eggNOG" id="arCOG05705">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_11_2"/>
    <dbReference type="OrthoDB" id="97750at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015854">
        <property type="entry name" value="ABC_transpr_LolD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24220:SF612">
        <property type="entry name" value="FE(3+) IONS IMPORT ATP-BINDING PROTEIN FBPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24220">
        <property type="entry name" value="IMPORT ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="3">
        <location>
            <begin position="3"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="225" mass="24728" checksum="79E5EDE27B3FF58C" modified="2008-05-20" version="1">MAVEVRGLRARRGRFQLEVERLSVNSVTVVLGRNGSGKTTLLDAIAGAIPAEGSVEACGREVSRLPPEERGLVYIQSTPVDPPGGPRRFLRWVAARWGRGEREVEEVAALLGIRDLLDRRGLSTGQKQLVNIAAGLLAGACGFLMDEPTSHLDWFNKRLVDDAVRRLGKPVLYVTHDPYEAAYIGDVICVMEEGRLRRCVENSPTDPAEPLVRRLLQPENQAAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDT1</accession>
    <name>B1YDT1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">ABC3 transporter permease protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1012</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350364.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDT1"/>
    <dbReference type="STRING" id="444157.Tneu_1012"/>
    <dbReference type="GeneID" id="6164945"/>
    <dbReference type="KEGG" id="tne:Tneu_1012"/>
    <dbReference type="eggNOG" id="arCOG02312">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_8_0_2"/>
    <dbReference type="OrthoDB" id="11469at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051125">
        <property type="entry name" value="ABC-4/HrtB_transporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43738:SF2">
        <property type="entry name" value="ABC TRANSPORTER PERMEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43738">
        <property type="entry name" value="ABC TRANSPORTER, MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="240"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="291"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="328"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="domain" description="MacB-like periplasmic core" evidence="8">
        <location>
            <begin position="20"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="ABC3 transporter permease C-terminal" evidence="7">
        <location>
            <begin position="251"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="11">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="373" mass="38975" checksum="BB9EBA28F9F341C2" modified="2008-05-20" version="1">MLPDLARLAWQSVRERAGRSALAATGVFVAFLALAVALSVGEMARSAVESAFQQLGLNTVWVMAQGGYFTEADVATAAAVAKEGVVIPIAQDFGKLRMPDGTERAVTVYYIPPQYLGLLLPKEALRGGQLYVGGPLVMVNSRVRMAGDRPAAPGSPMTLTRSDGSAVEVVAAGVFESTGFIGAADVLADSALYPERRYTILYVAARSPQAAEALAQALRPYFPDAVVITPQTLARQIGQLVSVVQVGLGALAGISTLITALWLYDTATISILLRTREIGIMRAVGFKRRHVIAMLLLETLIVVGIGVLAALPVLAAASAILISLGPGLYLKLAISPVAVGTAAAVVIGANILGVLPPAYRAGRLNVVDALRHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDZ9</accession>
    <name>B1YDZ9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">AAA ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1081</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350431.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDZ9"/>
    <dbReference type="STRING" id="444157.Tneu_1081"/>
    <dbReference type="GeneID" id="6165832"/>
    <dbReference type="KEGG" id="tne:Tneu_1081"/>
    <dbReference type="eggNOG" id="arCOG01174">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_720847_0_0_2"/>
    <dbReference type="OrthoDB" id="17644at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014774">
        <property type="entry name" value="KaiC-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637:SF2">
        <property type="entry name" value="PROTEIN GVPD 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637">
        <property type="entry name" value="UPF0273 PROTEIN TM_0370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06745">
        <property type="entry name" value="ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KaiC-like" evidence="3">
        <location>
            <begin position="8"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF06745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="380" mass="42101" checksum="D97CF10832A59304" modified="2008-05-20" version="1">MDLAFRGVTAIYGRPGAGKTSLAMRIAHGYLAAGKKVLWVSLYEDKETFLANAAKLGYDLSRAEFWDMIFVKPDVILNQIISAISQGEYHLVVADSLSALVEEGQSREWLINAVYRVFKPANIDFVGIAEEETVTPLDYIADNLIRLELKMENGVAERRMYVVKSRGRRAGYYVEFDILEGRGVVFIDELPQPRRRAPWGKWLDSLSKAFGPIKGGCVYLFYGRAATPLLAKAAAELSREGYKVLYRVFAGDPAAVASLIEKFGGRATVQRAAPAPMSHFAHVKSFYEALAETDADVVISDGVDVEFLVYGKKAFEINRFEAEELKRLGIALLARADRDYGLRYIADAVAAVGKEKAVVYTPAGVAECRYETQPEPRLAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE05</accession>
    <name>B1YE05_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Molybdate/tungstate import ATP-binding protein WtpC</fullName>
            <ecNumber evidence="6">7.3.2.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1087</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>tungstate(in) + ATP + H2O = tungstate(out) + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:35027"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46502"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.3.2.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5">The complex is composed of two ATP-binding proteins (WtpC), two transmembrane proteins (WtpB) and a solute-binding protein (WtpA).</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.</text>
    </comment>
    <dbReference type="EC" id="7.3.2.6" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350437.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE05"/>
    <dbReference type="STRING" id="444157.Tneu_1087"/>
    <dbReference type="GeneID" id="6165749"/>
    <dbReference type="KEGG" id="tne:Tneu_1087"/>
    <dbReference type="eggNOG" id="arCOG00175">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_2"/>
    <dbReference type="OrthoDB" id="31298at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901238">
        <property type="term" value="F:ABC-type tungstate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050093">
        <property type="entry name" value="ABC_SmlMolc_Importer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42781">
        <property type="entry name" value="SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42781:SF4">
        <property type="entry name" value="SPERMIDINE_PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="3"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00038307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00038781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00039025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00041133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="307" mass="33620" checksum="BB5C74306CABA6E0" modified="2008-05-20" version="1">MAISLRGVEKALGRFRLGPIDLEVGRGERVALVGPSGSGKSTLLRLVAGLARPDRGRVYIDGADVTGVEPWRRGVGFLFQTPALFPSLTVLENVAEPLLSRGVPRGEASRRAAEVLERLGLGPLAGRYPPELSRGQQQRAALARALAAEPPVLLLDEPLTALDPPLRGEVLPYIYEATRGRTVIYVTHDFEEATFIADRLVVLMDGRVAAEGRPADLFENPPSPRVAHFLGYSNRLKTECGHLYFRPWDVAPGGRYRGRVVAVWYRAGRHEVLAEVDGQHVRLLLPQPPAGGYVEFDVARGRCFPLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE30</accession>
    <name>B1YE30_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1112</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350462.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE30"/>
    <dbReference type="STRING" id="444157.Tneu_1112"/>
    <dbReference type="GeneID" id="6165658"/>
    <dbReference type="KEGG" id="tne:Tneu_1112"/>
    <dbReference type="eggNOG" id="arCOG04583">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1478972_0_0_2"/>
    <dbReference type="OrthoDB" id="8915at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase type 11" evidence="1">
        <location>
            <begin position="41"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="182" mass="20579" checksum="311EB4D3B2107AEE" modified="2008-05-20" version="1">MRIRVLREHYCADCRIVRRSPRSTGVKLLLSVADAAGMSVLDFGCSNWRNSAYLESLGARAVRMDAIPDTRPDVVAYPTHLPFRDGAFDVVLYTHVLMFLERKEDWPAAVAEAARVAKRYLVLETYMVKHPGALRYGVEDLFELVRGLSVVRRNVRLDMQNLVISLRPSSSPPSSRTSRRSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE42</accession>
    <name>B1YE42_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350474.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE42"/>
    <dbReference type="GeneID" id="6166069"/>
    <dbReference type="KEGG" id="tne:Tneu_1125"/>
    <dbReference type="HOGENOM" id="CLU_352196_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="304"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="345"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="379"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="414"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="464"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="502"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="536"/>
            <end position="554"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="842" mass="96689" checksum="E61ED96A8C0663BC" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE45</accession>
    <name>B1YE45_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">CRISPR-associated protein Cas6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1128</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350477.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE45"/>
    <dbReference type="STRING" id="444157.Tneu_1128"/>
    <dbReference type="GeneID" id="6165481"/>
    <dbReference type="KEGG" id="tne:Tneu_1128"/>
    <dbReference type="eggNOG" id="arCOG01439">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093724_0_0_2"/>
    <dbReference type="OrthoDB" id="28339at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1900">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019267">
        <property type="entry name" value="CRISPR-assoc_Cas6_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010156">
        <property type="entry name" value="CRISPR-assoc_prot_Cas6"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01877">
        <property type="entry name" value="cas_cas6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10040">
        <property type="entry name" value="CRISPR_Cas6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRISPR-associated protein Cas6 C-terminal" evidence="5">
        <location>
            <begin position="122"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF10040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="266" mass="29131" checksum="6C7816A0B5EBB25F" modified="2008-05-20" version="1">MRIVAVRARAGSAFAVSGFSGTVVESLVLKTLGRPDLHDARVKPFSVWPLLHRGRPVLWGAAVAPGDPVEVRVGFADDDMASQFAAAAAGGGLQLFGARLDPEAVEMRDAHHDLPQEQCFKLEFLSPLRFATPPLYRRSKPIYEFFPRPLSLFKSAVKHGRALGVTKLGAPFLRWVYTYVALTDFGCHSRCVATVKLPGGGIARGFLGWALYRAYGKRRITDLWKTIRLMETLNVGTGRSMGLGAVKATPLKCPNQQPTEKPTYPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="42" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE47</accession>
    <name>B1YE47_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1130</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350479.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE47"/>
    <dbReference type="STRING" id="444157.Tneu_1130"/>
    <dbReference type="GeneID" id="6165514"/>
    <dbReference type="KEGG" id="tne:Tneu_1130"/>
    <dbReference type="eggNOG" id="arCOG10104">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1782562_0_0_2"/>
    <dbReference type="OrthoDB" id="372784at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="145" mass="16471" checksum="6A2CCB6F6179E2E1" modified="2008-05-20" version="1">MSCPCVARLHIPDGSKHVTKYLRISKMQSHDPNEVHRYLSHVLDDSISDDCLRHRDNAVDCYFLDDSGQKIGVEFTTKLDTSHIKTKTIDGQQCDTSRCRAVIVLPAKNAPEIRVKTGILTCRSHRDCAELPHLLLKYEIVIVFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE54</accession>
    <name>B1YE54_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1137</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350486.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE54"/>
    <dbReference type="STRING" id="444157.Tneu_1137"/>
    <dbReference type="GeneID" id="6165735"/>
    <dbReference type="KEGG" id="tne:Tneu_1137"/>
    <dbReference type="eggNOG" id="arCOG04193">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1901838_0_0_2"/>
    <dbReference type="OrthoDB" id="376883at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="147" mass="17015" checksum="507CCFBF3E5C25CC" modified="2008-05-20" version="1">MESVQIKREELVERAARSVRPAVHLEMAYDVLDELSRSPEKYPEQLAKLSRIVVKVLNDVEEKLNDIEEELKHNPQSKESQKVKDRLAALQRARNRLAAWGRYVAELAKRLEEADDRERARMVRLFCAMALAPDKLTVELKKLLKGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8L8</accession>
    <name>B1Y8L8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FHA domain containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1168</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350516.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8L8"/>
    <dbReference type="STRING" id="444157.Tneu_1168"/>
    <dbReference type="GeneID" id="6165275"/>
    <dbReference type="KEGG" id="tne:Tneu_1168"/>
    <dbReference type="eggNOG" id="arCOG01694">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2257478_0_0_2"/>
    <dbReference type="OrthoDB" id="25462at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00240">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SMAD/FHA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FHA" evidence="1">
        <location>
            <begin position="44"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="103" mass="11421" checksum="752B357803F14229" modified="2008-05-20" version="1">MERAYVVEVFHPARLVLRGPVVLEREGVYGREHFAWLGPAAMYISRRHFALKRAGGALYILDLGSTNGTYVNGVDIRGEGLVELYRGDVVNVAGVVEFAVEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Q3</accession>
    <name>B1Y8Q3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Phosphoenolpyruvate synthase</fullName>
            <shortName evidence="12">PEP synthase</shortName>
            <ecNumber evidence="12">2.7.9.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Pyruvate, water dikinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ordered locus">Tneu_1204</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 12">Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11 12">
            <text>pyruvate + ATP + H2O = phosphoenolpyruvate + AMP + phosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:11364"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.9.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 12">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 12">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the PEP-utilizing enzyme family.</text>
    </comment>
    <dbReference type="EC" id="2.7.9.2" evidence="12"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350551.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Q3"/>
    <dbReference type="STRING" id="444157.Tneu_1204"/>
    <dbReference type="GeneID" id="6165407"/>
    <dbReference type="KEGG" id="tne:Tneu_1204"/>
    <dbReference type="eggNOG" id="arCOG01111">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007308_6_2_2"/>
    <dbReference type="OrthoDB" id="23397at2157"/>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008986">
        <property type="term" value="F:pyruvate, water dikinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1490.20:FF:000010">
        <property type="entry name" value="Phosphoenolpyruvate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="entry name" value="ATP-grasp fold, A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="entry name" value="Phosphoenolpyruvate-binding domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.10">
        <property type="entry name" value="Phosphohistidine domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006319">
        <property type="entry name" value="PEP_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018274">
        <property type="entry name" value="PEP_util_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000121">
        <property type="entry name" value="PEP_util_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023151">
        <property type="entry name" value="PEP_util_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002192">
        <property type="entry name" value="PPDK_AMP/ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01418">
        <property type="entry name" value="PEP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF005057">
        <property type="entry name" value="PRK06464.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43030">
        <property type="entry name" value="PHOSPHOENOLPYRUVATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43030:SF1">
        <property type="entry name" value="PHOSPHOENOLPYRUVATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02896">
        <property type="entry name" value="PEP-utilizers_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01326">
        <property type="entry name" value="PPDK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000854">
        <property type="entry name" value="PEP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="Phosphoenolpyruvate/pyruvate domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="Phosphohistidine domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00742">
        <property type="entry name" value="PEP_ENZYMES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00370">
        <property type="entry name" value="PEP_ENZYMES_PHOS_SITE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="10 12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate phosphate dikinase AMP/ATP-binding" evidence="14">
        <location>
            <begin position="17"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilising enzyme mobile" evidence="13">
        <location>
            <begin position="373"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilising enzyme C-terminal" evidence="15">
        <location>
            <begin position="482"/>
            <end position="773"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00047700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRNR" id="PIRNR000854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF01326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF02896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ACB40132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="810" mass="89555" checksum="476ADF75D4F3EFB1" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8W7</accession>
    <name>B1Y8W7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1269</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350615.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8W7"/>
    <dbReference type="STRING" id="444157.Tneu_1269"/>
    <dbReference type="GeneID" id="6165690"/>
    <dbReference type="KEGG" id="tne:Tneu_1269"/>
    <dbReference type="eggNOG" id="arCOG05554">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1352157_0_0_2"/>
    <dbReference type="OrthoDB" id="27466at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="193" mass="20915" checksum="0F00338206408C85" modified="2008-05-20" version="1">MLEFELYQDHLAVYYRGRKIPVLPLYTTPTLHHVQYVAAYVARRLLEAGVLRFKTGDPRAAKVIELACRGRCTYGEDGVDVEGVLEEAYYNHLADRVLAYAVSTDALVIPCADQPLARALARRAREYAPGLMLVASQHGGVCPEADVAHVPQPAEAPIPLGPASRAALGTAMWAIDEGVAESPLTPLLDAEVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8X5</accession>
    <name>B1Y8X5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">AAA ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1277</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8X5"/>
    <dbReference type="STRING" id="444157.Tneu_1277"/>
    <dbReference type="KEGG" id="tne:Tneu_1277"/>
    <dbReference type="eggNOG" id="arCOG01176">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071989_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:003503">
        <property type="entry name" value="P. aerophilum family 417, putative ATP binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637:SF2">
        <property type="entry name" value="PROTEIN GVPD 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637">
        <property type="entry name" value="UPF0273 PROTEIN TM_0370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="3">
        <location>
            <begin position="2"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="326" mass="37075" checksum="7B3EA4C1B48A0875" modified="2008-05-20" version="1">MRRGMTLIYGPPGSGKTSLAIRLASRVADKVLWISTTEGPDLLKEAARRVGVDPSTFDFYDFPRAFRQDIARYILDHIASYGAAVVDSVTGMATRQNIDVVTHSILYQITKEKPIIVIADEDTPHVSYIADHVIHVWYRKNSIGHYIRYVQLEKSRTRPPGPRYIFDIVEGKGIMYVHPLHTRGHTELVEEEKLGITAPLKSVVCIHGERVRKVNALLEKIKDSAIFLKIGFWTSFHGIELRDDQIYVVRTFHDLFTLYDSFASGKIKAEFVVVGGLLNMPEEDRPEYVYTLSSLLGFVRFLVFADVGPRDETVRLEKYCEEVVQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8X7</accession>
    <name>B1Y8X7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">KaiC-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1279</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350625.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8X7"/>
    <dbReference type="STRING" id="444157.Tneu_1279"/>
    <dbReference type="GeneID" id="6165855"/>
    <dbReference type="KEGG" id="tne:Tneu_1279"/>
    <dbReference type="eggNOG" id="arCOG01174">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_699460_0_0_2"/>
    <dbReference type="OrthoDB" id="17644at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000725">
        <property type="term" value="P:recombinational repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014774">
        <property type="entry name" value="KaiC-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32472">
        <property type="entry name" value="DNA REPAIR PROTEIN RADA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32472:SF10">
        <property type="entry name" value="DNA REPAIR PROTEIN RADA-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06745">
        <property type="entry name" value="ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KaiC-like" evidence="1">
        <location>
            <begin position="8"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="392" mass="42941" checksum="AE38E0F6DABB8221" modified="2008-05-20" version="1">MREFFQGFTLVYGPPGSGKTSLALYGAAQMGERVLYVGFYETADKVRAKAEGLGLDFSKFVVLDFLAVSDVDVLLSSVVEQYLKYSPDVVVLDGINALPQTREAASSIYRIFGVPTIAVGEEQIGGSHFAYVADTLLEVSQVFHRGARYRKIRVVKTRLGPGPGVEFYFTISRRGVRIVRRWSQSFMRPEPAASPSGRRVAFSEEVVSALARAMPGRRRPGLLAGSRVGAFLCEDPVCLKIAAGYLCDYLDGARVGVVSTYGHMAALAEQMGCSVEEVVVPTSELGDDQALWSAVERLGDVQVVSLYGLEEVLHVYGAERVGYVLDFVHSAFPEAALLATFRGVEPTPDLLTMFNTVWRYFPDRAVVVRSALGWPVQVLRVREEGGRFILSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Z4</accession>
    <name>B1Y8Z4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase involved in chromosome partitioning-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1296</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arsA ATPase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350642.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Z4"/>
    <dbReference type="STRING" id="444157.Tneu_1296"/>
    <dbReference type="GeneID" id="6165582"/>
    <dbReference type="KEGG" id="tne:Tneu_1296"/>
    <dbReference type="eggNOG" id="arCOG02849">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040761_3_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025723">
        <property type="entry name" value="ArsA/GET3_ATPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016300">
        <property type="entry name" value="ATPase_ArsA/GET3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10803">
        <property type="entry name" value="ARSENICAL PUMP-DRIVING ATPASE ARSENITE-TRANSLOCATING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10803:SF3">
        <property type="entry name" value="ATPASE GET3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02374">
        <property type="entry name" value="ArsA_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ArsA/GET3 Anion-transporting ATPase-like" evidence="2">
        <location>
            <begin position="9"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="261" mass="29527" checksum="3D853449FC73686F" modified="2008-05-20" version="1">MYKSLILGVFGKGGVGKTTVSLALALSLKKAVVITTDPYPGLKELLPNPPNGIELVEISYEHLKQEWKKEFGKEAYELFRGVADVDEEFIEYLSSAPGLVEQYAVYRVMKERDRGHVVIWDTQAAPGAMSLIKAELEFYNHLNKAIFYWGKLKKLLSRDVNLEKIIKKWRDVAEFTLNSLKDTRTVIVANEDKLSLKVAESIANELKEFTDFRGFILNKLKSTKPIQLSGEVLAKIPELDNPSPESVSRFISPKLLDLLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y908</accession>
    <name>B1Y908_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Aldehyde ferredoxin oxidoreductase</fullName>
            <ecNumber evidence="10">1.2.7.5</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1310</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>tungstopterin</name>
            <dbReference type="ChEBI" id="CHEBI:30402"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AOR/FOR family.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.5" evidence="10"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y908"/>
    <dbReference type="STRING" id="444157.Tneu_1310"/>
    <dbReference type="KEGG" id="tne:Tneu_1310"/>
    <dbReference type="eggNOG" id="arCOG00707">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020364_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033726">
        <property type="term" value="F:aldehyde ferredoxin oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.569.10">
        <property type="entry name" value="Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.599.10">
        <property type="entry name" value="Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.9.10">
        <property type="entry name" value="Aldehyde ferredoxin oxidoreductase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013984">
        <property type="entry name" value="Ald_Fedxn_OxRdtase_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013985">
        <property type="entry name" value="Ald_Fedxn_OxRdtase_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013983">
        <property type="entry name" value="Ald_Fedxn_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036503">
        <property type="entry name" value="Ald_Fedxn_OxRdtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001203">
        <property type="entry name" value="OxRdtase_Ald_Fedxn_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036021">
        <property type="entry name" value="Tungsten_al_ferr_oxy-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051919">
        <property type="entry name" value="W-dependent_AOR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30038">
        <property type="entry name" value="ALDEHYDE FERREDOXIN OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30038:SF5">
        <property type="entry name" value="ALDEHYDE FERREDOXIN OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01314">
        <property type="entry name" value="AFOR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02730">
        <property type="entry name" value="AFOR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00790">
        <property type="entry name" value="AFOR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48310">
        <property type="entry name" value="Aldehyde ferredoxin oxidoreductase, C-terminal domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56228">
        <property type="entry name" value="Aldehyde ferredoxin oxidoreductase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldehyde ferredoxin oxidoreductase N-terminal" evidence="9">
        <location>
            <begin position="7"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="612" mass="66835" checksum="89DB6E63C30B3226" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y974</accession>
    <name>B1Y974_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1377</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350722.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y974"/>
    <dbReference type="STRING" id="444157.Tneu_1377"/>
    <dbReference type="GeneID" id="6164454"/>
    <dbReference type="KEGG" id="tne:Tneu_1377"/>
    <dbReference type="eggNOG" id="arCOG04414">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_196479_0_0_2"/>
    <dbReference type="OrthoDB" id="28438at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="70" mass="7665" checksum="7249ACC3457B11B5" modified="2008-05-20" version="1">MYRLEIDVGGDELAIRVFKILEGEVRFARGRLYVAGGKIVAEAADASSLRSLLHTAMRALYIAEEVAALK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y977</accession>
    <name>B1Y977_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Exosome complex component Rrp42</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rrp42</name>
        <name evidence="7" type="ordered locus">Tneu_1380</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Component of the archaeal exosome complex. Forms a hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 heterodimers. The hexameric ring associates with a trimer of Rrp4 and/or Csl4 subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the RNase PH family. Rrp42 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350725.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y977"/>
    <dbReference type="STRING" id="444157.Tneu_1380"/>
    <dbReference type="GeneID" id="6165523"/>
    <dbReference type="KEGG" id="tne:Tneu_1380"/>
    <dbReference type="eggNOG" id="arCOG01574">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038194_0_0_2"/>
    <dbReference type="OrthoDB" id="30932at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000177">
        <property type="term" value="C:cytoplasmic exosome (RNase complex)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035925">
        <property type="term" value="F:mRNA 3'-UTR AU-rich region binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016075">
        <property type="term" value="P:rRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.230.70:FF:000017">
        <property type="entry name" value="Exosome complex component Rrp42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.70">
        <property type="entry name" value="GHMP Kinase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00622">
        <property type="entry name" value="Exosome_Rrp42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001247">
        <property type="entry name" value="ExoRNase_PH_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015847">
        <property type="entry name" value="ExoRNase_PH_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036345">
        <property type="entry name" value="ExoRNase_PH_dom2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050590">
        <property type="entry name" value="Exosome_comp_Rrp42_subfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027408">
        <property type="entry name" value="PNPase/RNase_PH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020869">
        <property type="entry name" value="Rrp42_archaea"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003282">
        <property type="entry name" value="PRK04282.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11097:SF8">
        <property type="entry name" value="EXOSOME COMPLEX COMPONENT RRP42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11097">
        <property type="entry name" value="EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01138">
        <property type="entry name" value="RNase_PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03725">
        <property type="entry name" value="RNase_PH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55666">
        <property type="entry name" value="Ribonuclease PH domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4" id="KW-0271">Exosome</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Exoribonuclease phosphorolytic" evidence="5">
        <location>
            <begin position="38"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="Exoribonuclease phosphorolytic" evidence="6">
        <location>
            <begin position="197"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="273" mass="29575" checksum="59851AA6E60D6304" modified="2008-05-20" version="1">MASISPYGKRFISYLRREQIKRLLATRYRVDGREPERVRSVEIRTGVVKTADGSAEVKLGRTHVVAGVKVGLGQPFPDAPDEGVLVVSAEVLPHASPYTEVGPPDESAIELARVVDRGIRHCGYVDFKKLAVEGGKAYILWVDLYVINDDGNLVDAANLAAVAALKNTQLPAVVKEEQGVKLDRNNKTPLPVDLNKAPIAVSIGKIGSVLLLDPTLEEELSLDGRITFTISEDRIVAAQKTIGAFAPQELEAALDLAWKGRGQYAEFLKNAGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y985</accession>
    <name>B1Y985_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PaREP2b</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1388</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y985"/>
    <dbReference type="STRING" id="444157.Tneu_1388"/>
    <dbReference type="KEGG" id="tne:Tneu_1388"/>
    <dbReference type="eggNOG" id="arCOG05572">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2476138_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="85" mass="9629" checksum="30BDC90234E3CB77" modified="2008-05-20" version="1">MVQAGNAQLECDMEYAEGRDVICRLYGVEMSCLEDAVRKTGFQNYIKIEGDRFYISTAIFKAGRTPGELIREIATLLRLCRSENS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9A5</accession>
    <name>B1Y9A5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350753.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9A5"/>
    <dbReference type="STRING" id="444157.Tneu_1409"/>
    <dbReference type="GeneID" id="6164787"/>
    <dbReference type="KEGG" id="tne:Tneu_1409"/>
    <dbReference type="eggNOG" id="arCOG05576">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1582951_0_0_2"/>
    <dbReference type="OrthoDB" id="28287at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="170" mass="18528" checksum="E6A2E058F0F9B33A" modified="2008-05-20" version="1">MSPKVVVLRDGGAPRDGDVIIDARGTPQFYDAVILSGRELRSIVATGVVNGGIPIGIGKYTKKTVAAVVGDKIYIRGVPLTLYEEAGLLEKEISEVLAKAGADTDYILRRLKEIVVAERRRNKRSQTLAQLSQYLSGQVDSLPPHIADLVGNLDRAALQKLFDKLVEELY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9D0</accession>
    <name>B1Y9D0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">CDC48 N-terminal subdomain domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1434</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350778.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9D0"/>
    <dbReference type="STRING" id="444157.Tneu_1434"/>
    <dbReference type="GeneID" id="6165081"/>
    <dbReference type="KEGG" id="tne:Tneu_1434"/>
    <dbReference type="eggNOG" id="arCOG04224">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_157709_1_0_2"/>
    <dbReference type="OrthoDB" id="27767at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="11"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="116" mass="12788" checksum="CA877F6CBB38C939" modified="2008-05-20" version="1">MAENRDVERGRKLLIPPFLSPQQEKKEQRKGERRVKVKAAEGVEEGVAKIPTEIYEALDKPEEVEVVAPGGSSHEKRRVFKAVHDGKVPGGEIHISAEDLKALGVADGTVVTVRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9H8</accession>
    <name>B1Y9H8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Family 562 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1482</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350826.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9H8"/>
    <dbReference type="STRING" id="444157.Tneu_1482"/>
    <dbReference type="GeneID" id="6165922"/>
    <dbReference type="KEGG" id="tne:Tneu_1482"/>
    <dbReference type="eggNOG" id="arCOG03763">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_180513_0_0_2"/>
    <dbReference type="OrthoDB" id="26755at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="97" mass="11006" checksum="E9B27C88A883D6DF" modified="2008-05-20" version="1">MYLQVARCPICGVEFRPEVKSIDDGEAEVRCPNGHVFTIHIDNDAVFDCEIRDWERFGLLPQTIQHAVLEAIQSGRIPRELRPLMTRLKDAGVVVCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9H9</accession>
    <name>B1Y9H9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1483</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350827.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9H9"/>
    <dbReference type="STRING" id="444157.Tneu_1483"/>
    <dbReference type="GeneID" id="6165933"/>
    <dbReference type="KEGG" id="tne:Tneu_1483"/>
    <dbReference type="eggNOG" id="arCOG05591">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1302670_0_0_2"/>
    <dbReference type="OrthoDB" id="25681at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="210" mass="24174" checksum="2EBEEC4679289DD8" modified="2008-05-20" version="1">MVCLEPFTPDEFTNWYRHLGRQRLFWAKPLVELFPLYKLAEGCVLKARWSSEKPRLEEAYIAIMKQLKKLDFLTTMRGTKILITPNTVDRDLAQMRGSLHIYSTSRPCATGIYLDRPPDGQPEASPDHVILSSGADARYVLYLNRWNFNIDHLWLAAPSALRDAVESAICEARRLGGRYVTIATGEGRLDSIDVGFYRPDYFYNVYKLSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9K8</accession>
    <name>B1Y9K8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1513</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350856.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9K8"/>
    <dbReference type="STRING" id="444157.Tneu_1513"/>
    <dbReference type="GeneID" id="6165825"/>
    <dbReference type="KEGG" id="tne:Tneu_1513"/>
    <dbReference type="eggNOG" id="arCOG00145">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_817886_0_0_2"/>
    <dbReference type="OrthoDB" id="85689at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23522:SF10">
        <property type="entry name" value="3-PHENYLPROPIONIC ACID TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23522">
        <property type="entry name" value="BLL5896 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="15"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="47"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="76"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="100"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="142"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="167"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="206"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="236"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="326"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="351"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily (MFS) profile" evidence="9">
        <location>
            <begin position="1"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="375" mass="38784" checksum="91687D7EA4B003FD" modified="2008-05-20" version="1">MGYTSSATNTSRADLRAYVLLSTPYSFVVFLLPFYVLEIGGGSVEVGVAYASYAAAVVVTRPTSGALADKFGRRRVMLLGGATLAVSMALLALSTGVAHVYISLFLAGAASSLVNVAALAYVSDVGGLEDPALYSRLKTAAALGALAGGASIPAVYVLSRLLSFADAFRLVAAVLALLAVSALLAVPGETKHLAARHKKGDRVQTFCVMSLATAFGSAVGLYGPQVMLYLHRRYSLSPYTAVVAYLPSVVSWIVGPRLAGPAYARLIAGGAAMALALVGMAVSPSPYVFSAFWAIESLGVAAVSTSLDQRLVRHVAGSYWGRGYGLYQALYNLGYSAAAAVSGFFDDPFTPALAPLSAALLTAAVCSNLQKRRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9L9</accession>
    <name>B1Y9L9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA-directed RNA polymerase subunit Rpo6</fullName>
            <ecNumber evidence="3">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">DNA-directed RNA polymerase subunit K</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpo6</name>
        <name evidence="3" type="synonym">rpoK</name>
        <name evidence="4" type="ordered locus">Tneu_1524</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the RNA polymerase complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunit family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350867.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9L9"/>
    <dbReference type="STRING" id="444157.Tneu_1524"/>
    <dbReference type="GeneID" id="6165873"/>
    <dbReference type="KEGG" id="tne:Tneu_1524"/>
    <dbReference type="eggNOG" id="arCOG01268">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112527_2_2_2"/>
    <dbReference type="OrthoDB" id="10567at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006360">
        <property type="term" value="P:transcription by RNA polymerase I"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006366">
        <property type="term" value="P:transcription by RNA polymerase II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042797">
        <property type="term" value="P:tRNA transcription by RNA polymerase III"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.940.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00192">
        <property type="entry name" value="RNApol_arch_Rpo6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020708">
        <property type="entry name" value="DNA-dir_RNA_polK_14-18kDa_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006110">
        <property type="entry name" value="Pol_omega/Rpo6/RPB6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036161">
        <property type="entry name" value="RPB6/omega-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006111">
        <property type="entry name" value="Rpo6/Rpb6"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002207">
        <property type="entry name" value="PRK01099.1-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002208">
        <property type="entry name" value="PRK01099.1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47227">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE SUBUNIT K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47227:SF5">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01192">
        <property type="entry name" value="RNA_pol_Rpb6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01409">
        <property type="entry name" value="RNA_pol_Rpb6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63562">
        <property type="entry name" value="RPB6/omega subunit-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01111">
        <property type="entry name" value="RNA_POL_K_14KD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="109" mass="12481" checksum="3C0A3B756FDF0849" modified="2008-05-20" version="1">MEALTTAELLDRINKLVDLLERALVRRDFYPPRLTKYEIARILGARAMQLAMGAQPLVDVRELGTTDPVLIAAEELKRGLLDFIIVRELPDGKTERLRLKELLELERSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9N0</accession>
    <name>B1Y9N0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1535</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9N0"/>
    <dbReference type="KEGG" id="tne:Tneu_1535"/>
    <dbReference type="eggNOG" id="arCOG04200">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_198006_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="62" mass="7323" checksum="2DCCB758640C19C2" modified="2008-05-20" version="1">MYQKLMSRKQKLKFYDIKAKQAFETDQYETVEKQTARGPMIFAVAKSPYTGIKVYRLIGKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9N1</accession>
    <name>B1Y9N1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Miro domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1536</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9N1"/>
    <dbReference type="KEGG" id="tne:Tneu_1536"/>
    <dbReference type="eggNOG" id="arCOG00364">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144586_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00882">
        <property type="entry name" value="Ras_like_GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="168" mass="18949" checksum="350531C067188036" modified="2008-05-20" version="1">MQQHKVMAFRRVVALLGVGGVGKTTFAYRLLGLSDVPVITLRPSYYRLYIGNYEYDILDVPGQLVYEVALKFASFKVSIVNRLIYMYDVTNYESLHAIAELHSIFIERKSSISEEVVIVGNKRDLAEEVGFYIEADEIASSIGADEVYYISAVKDPPEVLMKILRGVN</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="97" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9N6</accession>
    <name>ILVC_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ketol-acid reductoisomerase (NADP(+))</fullName>
            <shortName evidence="1">KARI</shortName>
            <ecNumber evidence="1">1.1.1.86</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Acetohydroxy-acid isomeroreductase</fullName>
            <shortName evidence="1">AHIR</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Alpha-keto-beta-hydroxylacyl reductoisomerase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Ketol-acid reductoisomerase type 1</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Ketol-acid reductoisomerase type I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ilvC</name>
        <name type="ordered locus">Tneu_1541</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2R)-2,3-dihydroxy-3-methylbutanoate + NADP(+) = (2S)-2-acetolactate + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:22068"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:49072"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="1.1.1.86"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2R,3R)-2,3-dihydroxy-3-methylpentanoate + NADP(+) = (S)-2-ethyl-2-hydroxy-3-oxobutanoate + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13493"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:49256"/>
            <dbReference type="ChEBI" id="CHEBI:49258"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.86"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 2/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ketol-acid reductoisomerase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.86" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350884.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9N6"/>
    <dbReference type="SMR" id="B1Y9N6"/>
    <dbReference type="STRING" id="444157.Tneu_1541"/>
    <dbReference type="GeneID" id="6165196"/>
    <dbReference type="KEGG" id="tne:Tneu_1541"/>
    <dbReference type="eggNOG" id="arCOG04465">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033821_0_1_2"/>
    <dbReference type="OrthoDB" id="6064at2157"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00056"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004455">
        <property type="term" value="F:ketol-acid reductoisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:L-valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000023">
        <property type="entry name" value="Ketol-acid reductoisomerase (NADP(+))"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00435">
        <property type="entry name" value="IlvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013023">
        <property type="entry name" value="KARI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000506">
        <property type="entry name" value="KARI_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013116">
        <property type="entry name" value="KARI_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014359">
        <property type="entry name" value="KARI_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00465">
        <property type="entry name" value="ilvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004017">
        <property type="entry name" value="PRK05479.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21371">
        <property type="entry name" value="KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21371:SF1">
        <property type="entry name" value="KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01450">
        <property type="entry name" value="KARI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07991">
        <property type="entry name" value="KARI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000116">
        <property type="entry name" value="IlvC_gammaproteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="6-phosphogluconate dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51851">
        <property type="entry name" value="KARI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51850">
        <property type="entry name" value="KARI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0521">NADP</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000191026" description="Ketol-acid reductoisomerase (NADP(+))">
        <location>
            <begin position="1"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="KARI N-terminal Rossmann" evidence="2">
        <location>
            <begin position="2"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="domain" description="KARI C-terminal knotted" evidence="3">
        <location>
            <begin position="183"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="108"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="25"/>
            <end position="28"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="83"/>
            <end position="86"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000255" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01198"/>
        </source>
    </evidence>
    <sequence length="327" mass="35626" checksum="13F6A7851B1FBD20" modified="2008-05-20" version="1">MAKIYTDKDASLEPLRGKTIAVIGYGIQGRAQALNLRDSGLKVIVGLRKGGNSWNVAASEGFEVYEVGEAVSRADVVMVLIPDMEQPKVWQSQIAPHLREGAVVDFAHGFNIHYGLIKPPKNVDVVMVAPKAPGRAVREEFLAGRGVPALVAVHQNYSGSALKYALAIAKGIGATRAGVIETTFAEETETDLIGEQTVLVGGLMELIKRGFEVLVEMGYQPEVAYFEVLNEAKLIMDLIWQRGIYGMLNGVSDTAKYGGLTVGPKIIDEEVKSKMKAAALRVKSGEFAKEWVEEYARGSPNLKRLMESVKEHPIEKVGAEMRKLLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9P4</accession>
    <name>B1Y9P4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0008</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349388.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9P4"/>
    <dbReference type="GeneID" id="6166093"/>
    <dbReference type="KEGG" id="tne:Tneu_0008"/>
    <dbReference type="eggNOG" id="arCOG05453">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2662502_0_0_2"/>
    <dbReference type="OrthoDB" id="23336at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB38966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="79" mass="8889" checksum="19B4ECEB40CBB3AF" modified="2008-05-20" version="1">MPRCAVCGNEVNFKNVAYIYGDVFVCRDCFPQYYIRNLCKAVERRLRGESPPACGFCSFKKQCDLYVSKTVKSLSSTGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="40" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9R4</accession>
    <name>B1Y9R4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0028</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349408.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9R4"/>
    <dbReference type="STRING" id="444157.Tneu_0028"/>
    <dbReference type="GeneID" id="6164906"/>
    <dbReference type="KEGG" id="tne:Tneu_0028"/>
    <dbReference type="eggNOG" id="arCOG08085">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2730574_0_0_2"/>
    <dbReference type="OrthoDB" id="374084at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB38986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="70" mass="8054" checksum="27DC5F0323264169" modified="2008-05-20" version="1">MLYYGRPEDLARAVRREIELLGALLNIDERLDAFIKRKIELLNRCLSQVERLPQGEYQLIAVGGCEIVPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9U7</accession>
    <name>B1Y9U7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1573</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350916.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9U7"/>
    <dbReference type="STRING" id="444157.Tneu_1573"/>
    <dbReference type="GeneID" id="6166042"/>
    <dbReference type="KEGG" id="tne:Tneu_1573"/>
    <dbReference type="eggNOG" id="arCOG05684">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1623521_0_0_2"/>
    <dbReference type="OrthoDB" id="27186at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="163" mass="18429" checksum="B332F610F26CC6C8" modified="2008-05-20" version="1">METFAPSPAELVKRYGARKLQSEKYEVSASNLPWVIKRDVALEILPGRRYLVEGVQLEGLPQPWEAYVALLDERGEFGVGYIVAKRRRMFKCIYKTYTRPPGLQVAPYITIKPVELHLTDKEGLVDCVERPLYAKTIAVFINAPPDVINGVKVAMAEPRILLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9V7</accession>
    <name>B1Y9V7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1583</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9V7"/>
    <dbReference type="STRING" id="444157.Tneu_1583"/>
    <dbReference type="KEGG" id="tne:Tneu_1583"/>
    <dbReference type="eggNOG" id="arCOG01021">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_5_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd06346">
        <property type="entry name" value="PBP1_ABC_ligand_binding-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001828">
        <property type="entry name" value="ANF_lig-bd_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051010">
        <property type="entry name" value="BCAA_transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30483:SF40">
        <property type="entry name" value="HISTIDINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30483">
        <property type="entry name" value="LEUCINE-SPECIFIC-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01094">
        <property type="entry name" value="ANF_receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="Periplasmic binding protein-like I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Receptor ligand binding region" evidence="6">
        <location>
            <begin position="89"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="17"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="19"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="450" mass="47851" checksum="38613D41F3FFDC50" modified="2008-05-20" version="1">MLAIIIIAAIALLGGGGKQAPTTTPTTGTPIGAAGGAAPTTGTASPTTQTPTTTTQTTTTQPSTPTKKVVYIGAALPLTGGLQSYGVGVKNAVELAVEDANRMCPSYRFELLVEDTGTNPQQALQKVQALYAKGARFIVGPMASGEVSAVKPFADQNKIIIFSPSSTSPLLAIPNDWIYRIVPTDFAQAAAIADLLKQLGVKKAVILYRNDAWGVGLKDAITKEAEKLGIQIASAQGYDPDPKAFATAIPEVVRKLSAALGQPSNDSAVIFLVFEDDGVVAIQSAAQDPVLGKIKWIGTDGIAYSDALIKQVGREMADHKMLGTIAAPDPNDPKYLEFKKEYRAKYGKDPVAYDAYGYDAAMMLMQIICKTGTDDPEKVRAALEQWGRDGTYQGATGKVYLDQAGDRAYPNYVIWGVAVVNGTAKYVDAAYYYGTERKITIFDQGKSLFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Z5</accession>
    <name>B1Y9Z5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">THUMP domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1622</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350964.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Z5"/>
    <dbReference type="STRING" id="444157.Tneu_1622"/>
    <dbReference type="GeneID" id="6165787"/>
    <dbReference type="KEGG" id="tne:Tneu_1622"/>
    <dbReference type="eggNOG" id="arCOG00056">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_795999_0_0_2"/>
    <dbReference type="OrthoDB" id="64018at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052837">
        <property type="term" value="P:thiazole biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002937">
        <property type="term" value="P:tRNA 4-thiouridine biosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2130.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025849">
        <property type="entry name" value="MJ0421-like_SPOUT_MTase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004114">
        <property type="entry name" value="THUMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050102">
        <property type="entry name" value="tRNA_sulfurtransferase_ThiI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43209">
        <property type="entry name" value="TRNA SULFURTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43209:SF1">
        <property type="entry name" value="TRNA SULFURTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14419">
        <property type="entry name" value="SPOUT_MTase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02926">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00981">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="alpha/beta knot"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143437">
        <property type="entry name" value="THUMP domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51165">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="THUMP" evidence="2">
        <location>
            <begin position="51"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="364" mass="40018" checksum="C0C85814E90AFBF7" modified="2008-05-20" version="1">MDLVIKTRRGLERAAASVVKELLGPGAEVEAAPHGYLGIVVAKGLGPDKWKAAELIAEKAPEADRILVVEALVKAELPEIEKAAVEVAKRYIKAGDTFAIRTTRRGVHGFTSVDVNVRVGAAVKEATGAEVDLEEPTKPLYIEIFQDVAAVCVPATREYRKLRRDKPLPLAVFRKMAVGQFVYEGDEEAVRKMGERIGRAAQTFEVGELAVLLHKPVSGRTLRIFLEAVEEGIESRYQIQAKSYGRPVRRVPLYVHELYQYVRDRHGEPIVVTDPKGDYITHVKDKLADLFREDRVNVLVGSREGVPPGVYRFAALVVDLVPEVTIATDFVIPSLAIAIASALEEAGALPRYVGKRGRAGQKDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Z6</accession>
    <name>B1Y9Z6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Small ribosomal subunit protein uS11</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rps11</name>
        <name evidence="9" type="ordered locus">Tneu_1623</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Located on the platform of the 30S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 7">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the universal ribosomal protein uS11 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350965.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Z6"/>
    <dbReference type="STRING" id="444157.Tneu_1623"/>
    <dbReference type="GeneID" id="6165685"/>
    <dbReference type="KEGG" id="tne:Tneu_1623"/>
    <dbReference type="eggNOG" id="arCOG04240">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_072439_6_1_2"/>
    <dbReference type="OrthoDB" id="12054at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.80:FF:000007">
        <property type="entry name" value="30S ribosomal protein S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.80">
        <property type="entry name" value="Ribosomal protein S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01310">
        <property type="entry name" value="Ribosomal_uS11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001971">
        <property type="entry name" value="Ribosomal_uS11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019961">
        <property type="entry name" value="Ribosomal_uS11_archaeal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018102">
        <property type="entry name" value="Ribosomal_uS11_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036967">
        <property type="entry name" value="Ribosomal_uS11_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03628">
        <property type="entry name" value="arch_S11P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF007176">
        <property type="entry name" value="PRK09607.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11759">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00411">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002131">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53137">
        <property type="entry name" value="Translational machinery components"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00054">
        <property type="entry name" value="RIBOSOMAL_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="135" mass="14292" checksum="5C9E89E91E7CC195" modified="2008-05-20" version="1">MSAEQQPQKLRWGIAWIYSSSNNTIITITDLTGAETVARVSGGMVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHDIIRPPSGRKGRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA18</accession>
    <name>B1YA18_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0034</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349414.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA18"/>
    <dbReference type="STRING" id="444157.Tneu_0034"/>
    <dbReference type="GeneID" id="6164938"/>
    <dbReference type="KEGG" id="tne:Tneu_0034"/>
    <dbReference type="eggNOG" id="arCOG01863">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_130237_0_0_2"/>
    <dbReference type="OrthoDB" id="11138at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="entry name" value="lambda repressor-like DNA-binding domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004451">
        <property type="entry name" value="MJ0586"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00270">
        <property type="entry name" value="multiprotein bridging factor aMBF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="lambda repressor-like DNA-binding domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="75"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="53"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB38992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="160" mass="17312" checksum="AF0FA7AA8E80AE60" modified="2008-05-20" version="1">MYCEICGRPIEGEPIPIEVDKAVLYVCRSCAATYGKKVIQQQAAPAVKKTPRPKPAAPRPPPPEVEIVENFGEVVKKARENLGLSREALAAMLGVKETVLRRIEAGQLQPDFALARKLEKTLGVRLLVESVEEGVAQTGRGAERGLTLGEVAEIRDGGEE</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-10-14" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA42</accession>
    <name>RS2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein uS2</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">30S ribosomal protein S2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps2</name>
        <name type="ordered locus">Tneu_0058</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS2 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349437.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA42"/>
    <dbReference type="SMR" id="B1YA42"/>
    <dbReference type="STRING" id="444157.Tneu_0058"/>
    <dbReference type="GeneID" id="6164685"/>
    <dbReference type="KEGG" id="tne:Tneu_0058"/>
    <dbReference type="eggNOG" id="arCOG04245">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058171_3_0_2"/>
    <dbReference type="OrthoDB" id="371797at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01425">
        <property type="entry name" value="RPS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10490:FF:000030">
        <property type="entry name" value="30S ribosomal protein S2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10490">
        <property type="entry name" value="Glucose-6-phosphate isomerase like protein, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00291_A">
        <property type="entry name" value="Ribosomal_uS2_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001865">
        <property type="entry name" value="Ribosomal_uS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023454">
        <property type="entry name" value="Ribosomal_uS2_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005707">
        <property type="entry name" value="Ribosomal_uS2_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023591">
        <property type="entry name" value="Ribosomal_uS2_flav_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01012">
        <property type="entry name" value="uS2_euk_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11489">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN SA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00318">
        <property type="entry name" value="Ribosomal_S2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00395">
        <property type="entry name" value="RIBOSOMALS2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52313">
        <property type="entry name" value="Ribosomal protein S2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_0000352082" description="Small ribosomal subunit protein uS2">
        <location>
            <begin position="1"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="206" mass="23600" checksum="D0A2AFE80FF93A70" modified="2008-05-20" version="1">MAEEAYEYLVPLEKYLSAGVRLGTRLSNRYLEERGFIFAVRPDGLRIFDIKKIDERLKIAAKFIARYPPDRVLVHTTRPYGFKPVQMFCKFVGCRALTGRFIPGTLTNPNLPHYQEVDLLFVVDPKLDAQAVTEAAKMGIPVVALVDTDTPHQYIDLMVPCNNKGRKSLALIFWILARQILRERGELKPDQDLPVPPEEFETRLVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA51</accession>
    <name>B1YA51_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Adenylyl cyclase CyaB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0067</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349446.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA51"/>
    <dbReference type="STRING" id="444157.Tneu_0067"/>
    <dbReference type="GeneID" id="6164668"/>
    <dbReference type="KEGG" id="tne:Tneu_0067"/>
    <dbReference type="eggNOG" id="arCOG01723">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105244_2_0_2"/>
    <dbReference type="OrthoDB" id="46040at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd07890">
        <property type="entry name" value="CYTH-like_AC_IV-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.320.10">
        <property type="entry name" value="Hypothetical Protein Pfu-838710-001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008173">
        <property type="entry name" value="Adenylyl_cyclase_CyaB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033469">
        <property type="entry name" value="CYTH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023577">
        <property type="entry name" value="CYTH_domain"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00318">
        <property type="entry name" value="cyaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21028:SF2">
        <property type="entry name" value="CYTH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21028">
        <property type="entry name" value="SI:CH211-156B7.4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01928">
        <property type="entry name" value="CYTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01118">
        <property type="entry name" value="CYTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55154">
        <property type="entry name" value="CYTH-like phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51707">
        <property type="entry name" value="CYTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CYTH" evidence="1">
        <location>
            <begin position="1"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="176" mass="19313" checksum="4C6DA7F24FA94E7B" modified="2008-05-20" version="1">MLEVEVKYRAHLAAVKSRLPSLGFSPSGAQSEEDVYFQHPCRNFAETDEALRVRVVGGRVEVTYKGPRLGLGGKTRAEITAEADLGVLEVLERLGFKPVARIRKRREYYTGRGLTVSLDWVEGLGEFVEIEKVVEGEGEVAAAVAEIRRLAAELGVGEEVGETYLELFLKAYKGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA60</accession>
    <name>B1YA60_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0076</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349455.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA60"/>
    <dbReference type="STRING" id="444157.Tneu_0076"/>
    <dbReference type="GeneID" id="6164870"/>
    <dbReference type="KEGG" id="tne:Tneu_0076"/>
    <dbReference type="eggNOG" id="arCOG05465">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_174519_0_0_2"/>
    <dbReference type="OrthoDB" id="28084at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="95" mass="10543" checksum="BA512E10153F90E0" modified="2008-05-20" version="1">MHKRSYKARVAGGKVTVNGKEIDVTQLTPAELLLAALAYGVGIRYIDKTGEPYELECEIDGYTITCTARCSGEEGRCLIYRALTEGTLRFHCRKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA71</accession>
    <name>B1YA71_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0087</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349466.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA71"/>
    <dbReference type="GeneID" id="6164709"/>
    <dbReference type="KEGG" id="tne:Tneu_0087"/>
    <dbReference type="eggNOG" id="arCOG05469">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1709205_0_0_2"/>
    <dbReference type="OrthoDB" id="27800at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="153" mass="16720" checksum="85CED90CDCC40CB0" modified="2008-05-20" version="1">MEIYAVAATAGRRRLFIDLTHWGLVEKRLRPFLVNSGWPQGLASPPVDIGVYIREVEEVYREALEEAAAAHAEFIKSARLWPLRFLMPVQIKASAAPWEVKTHVESVLGRNLAQVKAVGSGRAPLEVKNGAVYVGGVPSLGHTYLKLAGALPI</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAD6</accession>
    <name>RL31_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein eL31</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L31e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl31e</name>
        <name type="ordered locus">Tneu_1663</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL31 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351004.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAD6"/>
    <dbReference type="SMR" id="B1YAD6"/>
    <dbReference type="STRING" id="444157.Tneu_1663"/>
    <dbReference type="GeneID" id="6166222"/>
    <dbReference type="KEGG" id="tne:Tneu_1663"/>
    <dbReference type="eggNOG" id="arCOG04473">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112570_3_1_2"/>
    <dbReference type="OrthoDB" id="10127at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002181">
        <property type="term" value="P:cytoplasmic translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00463">
        <property type="entry name" value="Ribosomal_L31e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00410">
        <property type="entry name" value="Ribosomal_eL31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000054">
        <property type="entry name" value="Ribosomal_eL31"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020052">
        <property type="entry name" value="Ribosomal_eL31_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023621">
        <property type="entry name" value="Ribosomal_eL31_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002258">
        <property type="entry name" value="PRK01192.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10956">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10956:SF0">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01198">
        <property type="entry name" value="Ribosomal_L31e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01380">
        <property type="entry name" value="Ribosomal_L31e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54575">
        <property type="entry name" value="Ribosomal protein L31e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01144">
        <property type="entry name" value="RIBOSOMAL_L31E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000123760" description="Large ribosomal subunit protein eL31">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="91" mass="10556" checksum="FFBDC2FEAAA4E662" modified="2008-05-20" version="1">MSEERKVVASREYVISLRRAYVVSRTKRAKYAVGLIRRFVARHLKVEPSAVKIGQKLNMELWSRGIEKPPRRVRVSVEKYSDGTALVELKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAE3</accession>
    <name>B1YAE3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Inositol monophosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1670</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351011.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAE3"/>
    <dbReference type="STRING" id="444157.Tneu_1670"/>
    <dbReference type="GeneID" id="6165216"/>
    <dbReference type="KEGG" id="tne:Tneu_1670"/>
    <dbReference type="eggNOG" id="arCOG01349">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044118_5_0_2"/>
    <dbReference type="OrthoDB" id="58111at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008934">
        <property type="term" value="F:inositol monophosphate 1-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006020">
        <property type="term" value="P:inositol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.540.10">
        <property type="entry name" value="Fructose-1,6-Bisphosphatase, subunit A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20854">
        <property type="entry name" value="INOSITOL MONOPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20854:SF4">
        <property type="entry name" value="INOSITOL-1-MONOPHOSPHATASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00377">
        <property type="entry name" value="IMPHPHTASES"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56655">
        <property type="entry name" value="Carbohydrate phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR600760-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="250" mass="26844" checksum="D76178BE4DD87D04" modified="2008-05-20" version="1">MLGVLEAAVARASQYLMSAFRSGGGRAVVLDKGDDVTREADLAVEEMVFQMLKESFREGGVLYAEERGVYRWGDERYIFVLDPLDGSLNFAVGIPLFAVSLAAGRNREGTLHDLEYAAVAIPPTGDVYTAGPGVGARKNGRPVRREVRSNVVFVAVSNGFPDKTCDVVRRLGLKGRSLGSSAAELVFTAEGAARGFLDLRGRLRVLDIAGALTFGRYVPGFKYILYGEPYPDSRVSIIAGDGPFVDAAAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAE5</accession>
    <name>B1YAE5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1672</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351013.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAE5"/>
    <dbReference type="STRING" id="444157.Tneu_1672"/>
    <dbReference type="GeneID" id="6165386"/>
    <dbReference type="KEGG" id="tne:Tneu_1672"/>
    <dbReference type="eggNOG" id="arCOG05548">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1375586_0_0_2"/>
    <dbReference type="OrthoDB" id="31457at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="192" mass="20374" checksum="5EEC4381CBC67E3D" modified="2008-05-20" version="1">MVRRRNYRPLAAVAVLAVAALVAATVTFTNVTYWLINATKPPAMKYPGADTAVAGGQYVKVSYYYDSGRGVNITRISIIGFTGDPTNYTSVVKVCNYYGTTPITAYLVWVGQVGTTGYEGYIKAFLVKGPDGKGVGFVGTTTYTQAGPYTINPGACIDIGAYVAIDPAIPLSLANGQTILGTYQVNIQMSPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAG1</accession>
    <name>B1YAG1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Ribosome biogenesis protein Nop10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">nop10</name>
        <name evidence="8" type="ordered locus">Tneu_1688</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 7">Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the NOP10 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351029.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAG1"/>
    <dbReference type="STRING" id="444157.Tneu_1688"/>
    <dbReference type="GeneID" id="6165139"/>
    <dbReference type="KEGG" id="tne:Tneu_1688"/>
    <dbReference type="eggNOG" id="arCOG00906">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_196480_0_0_2"/>
    <dbReference type="OrthoDB" id="7259at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030515">
        <property type="term" value="F:snoRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001522">
        <property type="term" value="P:pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.40">
        <property type="entry name" value="H/ACA ribonucleoprotein complex, subunit Nop10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00803">
        <property type="entry name" value="Nop10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007264">
        <property type="entry name" value="H/ACA_rnp_Nop10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036756">
        <property type="entry name" value="H/ACA_rnp_Nop10_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023532">
        <property type="entry name" value="Nop10_arc-typ"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009623">
        <property type="entry name" value="PRK13130.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13305:SF0">
        <property type="entry name" value="H_ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13305">
        <property type="entry name" value="RIBOSOME BIOGENESIS PROTEIN NOP10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04135">
        <property type="entry name" value="Nop10p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144210">
        <property type="entry name" value="Nop10-like SnoRNP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="5 7" id="KW-0698">rRNA processing</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="74" mass="8471" checksum="E93AFA0F4CED7D81" modified="2008-05-20" version="1">MRSLLRRCTKCGAYTLSKERCPRCGGPVKVPHPPKYSPEDKYQRYRILQKLSTGALPVREETKERILKDLLGGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAI4</accession>
    <name>B1YAI4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1713</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351052.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAI4"/>
    <dbReference type="GeneID" id="6165249"/>
    <dbReference type="KEGG" id="tne:Tneu_1713"/>
    <dbReference type="eggNOG" id="arCOG08358">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_498425_0_0_2"/>
    <dbReference type="OrthoDB" id="380553at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="545" mass="59902" checksum="E628776701A3543A" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAJ2</accession>
    <name>RNZ_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribonuclease Z</fullName>
            <shortName evidence="1">RNase Z</shortName>
            <ecNumber evidence="1">3.1.26.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA 3 endonuclease</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNase Z</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rnz</name>
        <name type="ordered locus">Tneu_1723</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Zinc phosphodiesterase, which displays some tRNA 3'-processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Endonucleolytic cleavage of RNA, removing extra 3' nucleotides from tRNA precursor, generating 3' termini of tRNAs. A 3'-hydroxy group is left at the tRNA terminus and a 5'-phosphoryl group is left at the trailer molecule.</text>
            <dbReference type="EC" id="3.1.26.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 2 Zn(2+) ions.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RNase Z family.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.11" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351060.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAJ2"/>
    <dbReference type="SMR" id="B1YAJ2"/>
    <dbReference type="STRING" id="444157.Tneu_1723"/>
    <dbReference type="GeneID" id="6165416"/>
    <dbReference type="KEGG" id="tne:Tneu_1723"/>
    <dbReference type="eggNOG" id="arCOG00501">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031317_2_1_2"/>
    <dbReference type="OrthoDB" id="85118at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042781">
        <property type="term" value="F:3'-tRNA processing endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01818">
        <property type="entry name" value="RNase_Z_BN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013471">
        <property type="entry name" value="RNase_Z/BN"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46018">
        <property type="entry name" value="ZINC PHOSPHODIESTERASE ELAC PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46018:SF2">
        <property type="entry name" value="ZINC PHOSPHODIESTERASE ELAC PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0255">Endonuclease</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0540">Nuclease</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000188002" description="Ribonuclease Z">
        <location>
            <begin position="1"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="250"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01818"/>
        </source>
    </evidence>
    <sequence length="287" mass="31402" checksum="92B6AAF4F1FCB3D5" modified="2008-05-20" version="1">MPLLKLVFLGTGGAVPRSDRTLPAIYLEDWLGHRFLLDAGEGAQYRLLQIGVSPASLTAVAITHQHEDHTLGLPGLVITSRFLGGRTAVLAPRSMHKALEALGVEVMDSYGGDRLRVSCVEVCHTVDACGWLFQWDVGYKLDLSKAAGLPRWALTSLIRGSPVEVGGRLIKPEDVAEPGHKRLRRLLYTGDTAPCPEMWRKVGEVDVLIHEATFADDVEPQKAHEEGHSTVADAVEAAKALNAGVLILTHVSSRYPDKRRHRELAASVKPPPHVYVPEDFDTVLVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="98" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAL3</accession>
    <name>B1YAL3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="16">Carbamoyl phosphate synthase large chain</fullName>
            <ecNumber evidence="16">6.3.4.16</ecNumber>
            <ecNumber evidence="16">6.3.5.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="16">Carbamoyl phosphate synthetase ammonia chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="primary">carB</name>
        <name evidence="20" type="ordered locus">Tneu_0135</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="20" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14 16">Large subunit of the glutamine-dependent carbamoyl phosphate synthetase (CPSase). CPSase catalyzes the formation of carbamoyl phosphate from the ammonia moiety of glutamine, carbonate, and phosphate donated by ATP, constituting the first step of 2 biosynthetic pathways, one leading to arginine and/or urea and the other to pyrimidine nucleotides. The large subunit (synthetase) binds the substrates ammonia (free or transferred from glutamine from the small subunit), hydrogencarbonate and ATP and carries out an ATP-coupled ligase reaction, activating hydrogencarbonate by forming carboxy phosphate which reacts with ammonia to form carbamoyl phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13 16">
            <text>hydrogencarbonate + L-glutamine + 2 ATP + H2O = carbamoyl phosphate + L-glutamate + 2 ADP + phosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:18633"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12 16">
            <text>hydrogencarbonate + NH4(+) + 2 ATP = carbamoyl phosphate + 2 ADP + phosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:18029"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.16"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="16">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="16">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="16">Binds 4 Mg(2+) or Mn(2+) ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 16">Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 16">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15 16">Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate. Tetramer of heterodimers (alpha,beta)4.</text>
    </comment>
    <comment type="domain">
        <text evidence="16">The large subunit is composed of 2 ATP-grasp domains that are involved in binding the 2 ATP molecules needed for carbamoyl phosphate synthesis. The N-terminal ATP-grasp domain (referred to as the carboxyphosphate synthetic component) catalyzes the ATP-dependent phosphorylation of hydrogencarbonate to carboxyphosphate and the subsequent nucleophilic attack by ammonia to form a carbamate intermediate. The C-terminal ATP-grasp domain (referred to as the carbamoyl phosphate synthetic component) then catalyzes the phosphorylation of carbamate with the second ATP to form the end product carbamoyl phosphate. The reactive and unstable enzyme intermediates are sequentially channeled from one active site to the next through the interior of the protein over a distance of at least 96 A.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 16">Belongs to the CarB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.16" evidence="16"/>
    <dbReference type="EC" id="6.3.5.5" evidence="16"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349513.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAL3"/>
    <dbReference type="STRING" id="444157.Tneu_0135"/>
    <dbReference type="GeneID" id="6164717"/>
    <dbReference type="KEGG" id="tne:Tneu_0135"/>
    <dbReference type="eggNOG" id="arCOG01594">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000513_1_3_2"/>
    <dbReference type="OrthoDB" id="85487at2157"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00171"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004087">
        <property type="term" value="F:carbamoyl-phosphate synthase (ammonia) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004088">
        <property type="term" value="F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:L-arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1490.20:FF:000001">
        <property type="entry name" value="Carbamoyl-phosphate synthase large chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.470.20:FF:000001">
        <property type="entry name" value="Carbamoyl-phosphate synthase large chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.470.20:FF:000026">
        <property type="entry name" value="Carbamoyl-phosphate synthase large chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.20:FF:000001">
        <property type="entry name" value="Carbamoyl-phosphate synthase large chain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="entry name" value="ATP-grasp fold, A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1030.10">
        <property type="entry name" value="Carbamoyl-phosphate synthetase, large subunit oligomerisation domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01210_A">
        <property type="entry name" value="CPSase_L_chain_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036897">
        <property type="entry name" value="CarbamoylP_synth_lsu_oligo_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CPAse_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005483">
        <property type="entry name" value="CPSase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006275">
        <property type="entry name" value="CPSase_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005480">
        <property type="entry name" value="CPSase_lsu_oligo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058047">
        <property type="entry name" value="CPSase_preATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011607">
        <property type="entry name" value="MGS-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01369">
        <property type="entry name" value="CPSaseII_lrg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003671">
        <property type="entry name" value="PRK05294.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009455">
        <property type="entry name" value="PRK12815.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11405:SF53">
        <property type="entry name" value="CARBAMOYL-PHOSPHATE SYNTHASE [AMMONIA], MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11405">
        <property type="entry name" value="CARBAMOYLTRANSFERASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25596">
        <property type="entry name" value="CPSase_L_D1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02787">
        <property type="entry name" value="CPSase_L_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00098">
        <property type="entry name" value="CPSASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01096">
        <property type="entry name" value="CPSase_L_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48108">
        <property type="entry name" value="Carbamoyl phosphate synthetase, large subunit connection domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="PreATP-grasp domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51855">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 16" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4 16" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="10 16 17" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 16" id="KW-0436">Ligase</keyword>
    <keyword evidence="11" id="KW-0464">Manganese</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 16 17" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 16" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="ATP-grasp" evidence="18">
        <location>
            <begin position="130"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="18">
        <location>
            <begin position="661"/>
            <end position="850"/>
        </location>
    </feature>
    <feature type="domain" description="MGS-like" evidence="19">
        <location>
            <begin position="918"/>
            <end position="1025"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carboxyphosphate synthetic domain" evidence="16">
        <location>
            <begin position="1"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carbamoyl phosphate synthetic domain" evidence="16">
        <location>
            <begin position="537"/>
            <end position="918"/>
        </location>
    </feature>
    <feature type="region of interest" description="Allosteric domain" evidence="16">
        <location>
            <begin position="919"/>
            <end position="1025"/>
        </location>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="212"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="238"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="281"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="281"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="281"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="295"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="295"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="295"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="295"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="295"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="297"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="297"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="697"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="736"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="743"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="767"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="768"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="769"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="770"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="810"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="810"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="810"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="821"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="821"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="821"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>4</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="821"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="821"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>4</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="823"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>4</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="823"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>4</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00047359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00048816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00057223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00062056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS51855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="ACB39092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="1025" mass="112847" checksum="0ABFEE963A423F0A" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAL5</accession>
    <name>B1YAL5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">AIR synthase related protein domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0137</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HypE family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349515.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAL5"/>
    <dbReference type="STRING" id="444157.Tneu_0137"/>
    <dbReference type="GeneID" id="6164629"/>
    <dbReference type="KEGG" id="tne:Tneu_0137"/>
    <dbReference type="eggNOG" id="arCOG00636">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041631_0_0_2"/>
    <dbReference type="OrthoDB" id="31494at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051604">
        <property type="term" value="P:protein maturation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd06061">
        <property type="entry name" value="PurM-like1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="entry name" value="PurM-like C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="entry name" value="PurM-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011854">
        <property type="entry name" value="HypE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30303:SF4">
        <property type="entry name" value="HYDROGENASE EXPRESSION_FORMATION PROTEIN HYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30303">
        <property type="entry name" value="HYDROGENASE ISOENZYMES FORMATION PROTEIN HYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005644">
        <property type="entry name" value="Hdrgns_mtr_HypE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="PurM C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="PurM N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PurM-like N-terminal" evidence="2">
        <location>
            <begin position="33"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="PurM-like C-terminal" evidence="3">
        <location>
            <begin position="149"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="326" mass="34199" checksum="5CC1920DECDF4111" modified="2008-05-20" version="1">MKIGKIPPGVLQGVVFRRTGAQRKEVVVGPAVGEDAAIIDIGGRYVAVHTDPITGSVKLLGYLAVYIPTNDIAVRGIPPMWLSVALLLPPEVEEGDLDVLTAQIDAAARELGAAVVGGHTEVTTAVTRPVAVVTAAGVGERYVTTSGARPGDVVLMTKSAGQEAASILATDFREEALRRGVSPASVERAGELARAVSVAREALAVADLATSMHDPTEGGVANGLAEVAYASGVSIEVDPGSVVVYREVEELCSAFGVDPLETLSSGVLLATVPPDRLGEAEERLRKLGVSFSQIGRVTERRGYLVKIGDRLYREPHVEDKLFTLFS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAM9</accession>
    <name>HIS1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP phosphoribosyltransferase</fullName>
            <shortName evidence="1">ATP-PRT</shortName>
            <shortName evidence="1">ATP-PRTase</shortName>
            <ecNumber evidence="1">2.4.2.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hisG</name>
        <name type="ordered locus">Tneu_0151</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>1-(5-phospho-beta-D-ribosyl)-ATP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + ATP</text>
            <dbReference type="Rhea" id="RHEA:18473"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:73183"/>
            <dbReference type="EC" id="2.4.2.17"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="1">Feedback inhibited by histidine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATP phosphoribosyltransferase family. Long subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.17" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349529.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAM9"/>
    <dbReference type="SMR" id="B1YAM9"/>
    <dbReference type="STRING" id="444157.Tneu_0151"/>
    <dbReference type="GeneID" id="6164786"/>
    <dbReference type="KEGG" id="tne:Tneu_0151"/>
    <dbReference type="eggNOG" id="arCOG02208">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038115_1_1_2"/>
    <dbReference type="OrthoDB" id="33116at2157"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00006"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003879">
        <property type="term" value="F:ATP phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:L-histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13594">
        <property type="entry name" value="PBP2_HisGL4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.120:FF:000002">
        <property type="entry name" value="ATP phosphoribosyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00079">
        <property type="entry name" value="HisG_Long"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020621">
        <property type="entry name" value="ATP-PRT_HisG_long"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013820">
        <property type="entry name" value="ATP_PRibTrfase_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018198">
        <property type="entry name" value="ATP_PRibTrfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001348">
        <property type="entry name" value="ATP_PRibTrfase_HisG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013115">
        <property type="entry name" value="HisG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00070">
        <property type="entry name" value="hisG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03455">
        <property type="entry name" value="HisG_C-term"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21403:SF10">
        <property type="entry name" value="ATP PHOSPHORIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21403">
        <property type="entry name" value="ATP PHOSPHORIBOSYLTRANSFERASE ATP-PRTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01634">
        <property type="entry name" value="HisG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08029">
        <property type="entry name" value="HisG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="GlnB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01316">
        <property type="entry name" value="ATP_P_PHORIBOSYLTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0328">Glycosyltransferase</keyword>
    <keyword id="KW-0368">Histidine biosynthesis</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000092756" description="ATP phosphoribosyltransferase">
        <location>
            <begin position="1"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00079"/>
        </source>
    </evidence>
    <sequence length="282" mass="30346" checksum="B5BE1A25BB0AAA01" modified="2008-05-20" version="1">MLLAVPSKGRLQEPTLKLLEAVGIKPLASDERALVLPTSWPDVNLIKARPEDIPYLVESGRVWAGVTGHDYVLESGSNVVEALDLEFGRGRLVVAVPKSSGIKSVEELPPGARVATKFVNIAYNYFAELGKRVRVVKVTGSVEVLPQLGIADAILDVMATGTTLEVHGLTPIATVLETSARLVVHPEYTSHELTKKLVTFIKGYFAAQGKKMIFLNVPAARLEAVLSVLPAMEAPSVTKLAKGDIYEVFSVVSEDVLPDLVMKLKNAGAKDIVVTSIEKLIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAP8</accession>
    <name>B1YAP8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0171</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349548.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAP8"/>
    <dbReference type="STRING" id="444157.Tneu_0171"/>
    <dbReference type="GeneID" id="6164772"/>
    <dbReference type="KEGG" id="tne:Tneu_0171"/>
    <dbReference type="eggNOG" id="arCOG05479">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1187818_0_0_2"/>
    <dbReference type="OrthoDB" id="27839at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="234" mass="25902" checksum="E9CB2EFD7CB55C22" modified="2008-05-20" version="1">MWLIYFTTAALALLALAGVLLVVEQAYSGTLEAYRVAKFTLDQWTSLASQLNRTMCIAAETKADEAVAALNASKYLELSRLFRQAMEEVRAKTLLKTINYSLKLEGDYLTWEVSFRGRKASGRIDWLRPTALIAAAKAIQSASFDLTDSTVYDVLKPLVPPGAVLTGTVYGYLTGNHTYTGYLHGEYTLVDKTDYRCLPGRPIARFAATHFATLTTNSTSPSIYIYYEVYIDGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAQ3</accession>
    <name>B1YAQ3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">pyruvate synthase</fullName>
            <ecNumber evidence="1">1.2.7.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0176</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>2 oxidized [2Fe-2S]-[ferredoxin] + pyruvate + CoA = 2 reduced [2Fe-2S]-[ferredoxin] + acetyl-CoA + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12765"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="1.2.7.1"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="1.2.7.1" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349553.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAQ3"/>
    <dbReference type="STRING" id="444157.Tneu_0176"/>
    <dbReference type="GeneID" id="6164714"/>
    <dbReference type="KEGG" id="tne:Tneu_0176"/>
    <dbReference type="eggNOG" id="arCOG01603">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_087284_2_0_2"/>
    <dbReference type="OrthoDB" id="372091at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="entry name" value="Pyruvate-ferredoxin oxidoreductase, PFOR, domain III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051626">
        <property type="entry name" value="Oxidoreductase_gamma_subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011894">
        <property type="entry name" value="PorC_KorC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02175">
        <property type="entry name" value="PorC_KorC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43366">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43366:SF1">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="Pyruvate-ferredoxin oxidoreductase, PFOR, domain III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyruvate/ketoisovalerate oxidoreductase catalytic" evidence="4">
        <location>
            <begin position="12"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00049357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="175" mass="18991" checksum="806D50F35044B5CB" modified="2008-05-20" version="1">MGLVELRFHGRGGQGMVTAAQVLAASAVLEGRYAQAFPEFGPERRGAPVKSYLRISDKPIYIREPIQRPDVVVVADPSLFKAENPLEGAKPTAVLVVNGLYKAPVKTYYIDATSLSMKILGRPIVNTAMIGAVVKATGVVSLASVGKALRKFFSGRLYELNLKLVEVAYQETREL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAS4</accession>
    <name>B1YAS4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0197</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349574.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAS4"/>
    <dbReference type="STRING" id="444157.Tneu_0197"/>
    <dbReference type="GeneID" id="6165750"/>
    <dbReference type="KEGG" id="tne:Tneu_0197"/>
    <dbReference type="eggNOG" id="arCOG05423">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069756_0_0_2"/>
    <dbReference type="OrthoDB" id="29066at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="235"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="324" mass="36281" checksum="7A75A04178EBF8FE" modified="2008-05-20" version="1">MRWIPILALAAIAMAANMTVVTTPSGNIHITYVDNGTQIVININNNKVITANIKTNVSIAGEQYYLHIVGQAKGQFSNATIKQLLALLNQTGQPRVDSLIQAFKLLVNSNETQRLKVNAMLTAASLNKTAPNATYLKMKLEYELERKLSKLNGTLTREKEWEIKMIAGDLNKTAALLSAIAARLEKYNISDAKTLLAVAQQLTQISNKVEELEMYINGTKVEIKFDENHYKIEIGKEEDHKTNQHDVDKSGEKEEKAKEKSDDERDSGGKSLEQKGDVKQSSGGEEKKDKSEEKKDEKGKSEDKKKDEKDKSEDKDDKEKKSRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAT1</accession>
    <name>B1YAT1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349581.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAT1"/>
    <dbReference type="GeneID" id="6164985"/>
    <dbReference type="KEGG" id="tne:Tneu_0205"/>
    <dbReference type="eggNOG" id="arCOG05484">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1912419_0_0_2"/>
    <dbReference type="OrthoDB" id="27862at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="130" mass="13976" checksum="12170CAF76294122" modified="2008-05-20" version="1">MEKIANWVDAFNNIARNENNFHSFLIERGENSLDATLTLEEVGHVGGCIGGAFAAATLTMREGKATLEISTGNYRKCPTEAGYVADYAKTSVERLDLGGDPELISYVKSLKNEGDFIALLEAVIQSAASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAV5</accession>
    <name>B1YAV5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ribonuclease VapC</fullName>
            <shortName evidence="5">RNase VapC</shortName>
            <ecNumber evidence="5">3.1.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Putative toxin VapC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">vapC</name>
        <name evidence="7" type="ordered locus">Tneu_0230</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Toxic component of a toxin-antitoxin (TA) system. An RNase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PINc/VapC protein family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349605.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAV5"/>
    <dbReference type="STRING" id="444157.Tneu_0230"/>
    <dbReference type="GeneID" id="6165326"/>
    <dbReference type="KEGG" id="tne:Tneu_0230"/>
    <dbReference type="eggNOG" id="arCOG00727">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119496_2_0_2"/>
    <dbReference type="OrthoDB" id="275611at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:RNA nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09874">
        <property type="entry name" value="PIN_MT3492-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1010">
        <property type="entry name" value="5'-nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00265">
        <property type="entry name" value="VapC_Nob1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022907">
        <property type="entry name" value="VapC_family"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="PIN domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0800">Toxin</keyword>
    <keyword evidence="1 5" id="KW-1277">Toxin-antitoxin system</keyword>
    <feature type="domain" description="PIN" evidence="6">
        <location>
            <begin position="2"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="5"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="145" mass="15781" checksum="A845A042DC077A1B" modified="2008-05-20" version="1">MIYLDTSALVKRYVEEPGSAEVDKLFESAYRGSAVLSTSIYNIGEAASALDKKARRGELTRGAEIAVLLMLRELKTLTRLGNFAIVPLGGAVLRRSITLTLRHHLYFADALQIASCLHVKCGALYTADAELAKAAEREGLKTVEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAZ1</accession>
    <name>B1YAZ1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Haloacid dehalogenase domain protein hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1773</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HAD-like hydrolase superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351110.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAZ1"/>
    <dbReference type="STRING" id="444157.Tneu_1773"/>
    <dbReference type="GeneID" id="6166262"/>
    <dbReference type="KEGG" id="tne:Tneu_1773"/>
    <dbReference type="eggNOG" id="arCOG02291">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045011_8_3_2"/>
    <dbReference type="OrthoDB" id="27736at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.400">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051540">
        <property type="entry name" value="S-2-haloacid_dehalogenase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43316:SF3">
        <property type="entry name" value="HALOACID DEHALOGENASE, TYPE II (AFU_ORTHOLOGUE AFUA_2G07750)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43316">
        <property type="entry name" value="HYDROLASE, HALOACID DELAHOGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00702">
        <property type="entry name" value="Hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01129">
        <property type="entry name" value="C1.5:_HAD__Beta-PGM__Phosphata"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00003">
        <property type="entry name" value="Haloacid_Dehalogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="251" mass="28215" checksum="3F4928DD6AB1C5A2" modified="2008-05-20" version="1">MVKLMTIDVWGTLVPVEPAVKAVVDAIHRSLGGRVPYQTLHALVNEERRKMKLNRRERQEVVPPIYTLLNIQRQLRSRGINASFDVYQVQDAIDEAVSRLEVQPYEDAVEAVKHARAEGYRVGIISNVLLWRSRATRGLLANLGISQLVDLQLYADDVGYVKPAVQIFEAARALLVGDVVPDVYLHIGDDFYEDFLGALMAGYGAVLIDRWGQYTKRDVTESVTCRAYIVKSLKTLPLVLHEAESCVPRSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB00</accession>
    <name>B1YB00_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dihydropteroate synthase</fullName>
            <ecNumber evidence="2">2.5.1.15</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1782</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.5.1.15" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351119.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB00"/>
    <dbReference type="STRING" id="444157.Tneu_1782"/>
    <dbReference type="GeneID" id="6165182"/>
    <dbReference type="KEGG" id="tne:Tneu_1782"/>
    <dbReference type="eggNOG" id="arCOG01978">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008023_0_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004156">
        <property type="term" value="F:dihydropteroate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="entry name" value="Dihydropteroate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045031">
        <property type="entry name" value="DHP_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000489">
        <property type="entry name" value="Pterin-binding_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20941">
        <property type="entry name" value="FOLATE SYNTHESIS PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20941:SF1">
        <property type="entry name" value="FOLIC ACID SYNTHESIS PROTEIN FOL1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00809">
        <property type="entry name" value="Pterin_bind"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="Dihydropteroate synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50972">
        <property type="entry name" value="PTERIN_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pterin-binding" evidence="1">
        <location>
            <begin position="19"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="310" mass="34114" checksum="3C901DE33A8AE915" modified="2008-05-20" version="1">MDKIEGELGGVKLGDGRPVRIMAVLNISPESFYKGSVALQNALERALELEKHSDIIDVGAMSTAPYLDSWIPPEKELERLKAVLPELVKNLKVPVSVDTYRPQVAAYALKAGASIINDVTGGKLYPDICRIVADHGASAVLVARERAARPGADPVARVLDALRESLEHFEKCGVDPRRVAVDPGIGFPLLPPRDEPHTVRGEYRHGDERWPWWRWDLYLVAKLERLRALGRPILVGVSRKSFLRRIAGVESPDEVLPASLAAEVAAVLHGAHAVRTHNPRETRQAVQLAQRLVELLQEGQDGVGELPRLV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB76</accession>
    <name>DEOC_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Deoxyribose-phosphate aldolase</fullName>
            <shortName evidence="1">DERA</shortName>
            <ecNumber evidence="1">4.1.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">2-deoxy-D-ribose 5-phosphate aldolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Phosphodeoxyriboaldolase</fullName>
            <shortName evidence="1">Deoxyriboaldolase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">deoC</name>
        <name type="ordered locus">Tneu_0254</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde</text>
            <dbReference type="Rhea" id="RHEA:12821"/>
            <dbReference type="ChEBI" id="CHEBI:15343"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="ChEBI" id="CHEBI:62877"/>
            <dbReference type="EC" id="4.1.2.4"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.1.2.4" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349628.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB76"/>
    <dbReference type="SMR" id="B1YB76"/>
    <dbReference type="STRING" id="444157.Tneu_0254"/>
    <dbReference type="GeneID" id="6166257"/>
    <dbReference type="KEGG" id="tne:Tneu_0254"/>
    <dbReference type="eggNOG" id="arCOG04320">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053595_0_2_2"/>
    <dbReference type="OrthoDB" id="31145at2157"/>
    <dbReference type="UniPathway" id="UPA00002">
        <property type="reaction ID" value="UER00468"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004139">
        <property type="term" value="F:deoxyribose-phosphate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006018">
        <property type="term" value="P:2-deoxyribose 1-phosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016052">
        <property type="term" value="P:carbohydrate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009264">
        <property type="term" value="P:deoxyribonucleotide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00959">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00114">
        <property type="entry name" value="DeoC_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011343">
        <property type="entry name" value="DeoC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002915">
        <property type="entry name" value="DeoC/FbaB/LacD_aldolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028581">
        <property type="entry name" value="DeoC_typeI"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00126">
        <property type="entry name" value="deoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10889">
        <property type="entry name" value="DEOXYRIBOSE-PHOSPHATE ALDOLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10889:SF1">
        <property type="entry name" value="DEOXYRIBOSE-PHOSPHATE ALDOLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001357">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01133">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51569">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0704">Schiff base</keyword>
    <feature type="chain" id="PRO_1000094861" description="Deoxyribose-phosphate aldolase">
        <location>
            <begin position="1"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="1">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with acetaldehyde" evidence="1">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="1">
        <location>
            <position position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00114"/>
        </source>
    </evidence>
    <sequence length="229" mass="24962" checksum="79688C3C77E54C22" modified="2008-05-20" version="1">MLHLVDYALLKPYLTLEEVARGARRAEELGVAAYCVNPLYAPYVRELLSRVKLCVVADFPFGAMPTAARAALVARIAEYAEEIDVVAPIGLVKSHMWGEVRRDLLSVVGAAGGRVVKVIVEEPYLTDEERHRLYDIVAESGAHFIKSSTGFAEEAYARQLGNPTYSTPERAAAIARYIRERGFRLGVKMAGGIRTAEQAKAIIDAIGFGTDPTKVRLGTSTPEALRTLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB81</accession>
    <name>B1YB81_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Lysine biosynthesis enzyme LysX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0259</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="9">Amino-acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RimK family. LysX subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349633.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB81"/>
    <dbReference type="STRING" id="444157.Tneu_0259"/>
    <dbReference type="GeneID" id="6165497"/>
    <dbReference type="KEGG" id="tne:Tneu_0259"/>
    <dbReference type="eggNOG" id="arCOG01589">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054353_2_1_2"/>
    <dbReference type="OrthoDB" id="33241at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043774">
        <property type="term" value="F:coenzyme F420-2 alpha-glutamyl ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009085">
        <property type="term" value="P:lysine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1490.20:FF:000025">
        <property type="entry name" value="Alpha-aminoadipate--LysW ligase LysX protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.470.20:FF:000058">
        <property type="entry name" value="Alpha-aminoadipate--LysW ligase LysX protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="entry name" value="ATP-grasp fold, A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013651">
        <property type="entry name" value="ATP-grasp_RimK-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011870">
        <property type="entry name" value="LysX_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004666">
        <property type="entry name" value="Rp_bS6_RimK/Lys_biosynth_LsyX"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02144">
        <property type="entry name" value="LysX_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00768">
        <property type="entry name" value="rimK_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21621:SF2">
        <property type="entry name" value="COENZYME GAMMA-F420-2:ALPHA-L-GLUTAMATE LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21621">
        <property type="entry name" value="RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08443">
        <property type="entry name" value="RimK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="PreATP-grasp domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="11">
        <location>
            <begin position="95"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00029440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="283" mass="31305" checksum="4D2185EF4206CDFB" modified="2008-05-20" version="1">MWLFLTRHGEIDFVYDVARLDERLLLDALKRRGAAVRLVKAEEVLAPEGFGNVGVIRLAARSRVIPAAFTYEANGGLSINSAQSLVLSHDKYLTYLRLREYGVPTPRTYLAFGLEAARAAAEKLSYPVIVKPTDGSWGRYVSMVKSAEDLETVVMHRQAMESDLHIYLVQEYVEKPGRDIRVTVVGDRAVAAIYRIASADWRTNTARGGRAEPVKIDPELEEVAVRASKAVGTYYSGVDVVETPRGYLVLEVNGVPEFKNVQRVTGVDVAGEIAGLIIDVVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB92</accession>
    <name>B1YB92_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA repair protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0271</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in DNA damage repair.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the Nre family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349644.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB92"/>
    <dbReference type="STRING" id="444157.Tneu_0271"/>
    <dbReference type="GeneID" id="6165534"/>
    <dbReference type="KEGG" id="tne:Tneu_0271"/>
    <dbReference type="eggNOG" id="arCOG04269">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039703_0_0_2"/>
    <dbReference type="OrthoDB" id="6609at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02096">
        <property type="entry name" value="Nre"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033167">
        <property type="entry name" value="Nre"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006979">
        <property type="entry name" value="Nre_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006978">
        <property type="entry name" value="Nre_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38136">
        <property type="entry name" value="DNA REPAIR PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38136:SF2">
        <property type="entry name" value="DNA REPAIR PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04895">
        <property type="entry name" value="Nre_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04894">
        <property type="entry name" value="Nre_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Archaeal Nre N-terminal" evidence="2">
        <location>
            <begin position="15"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="domain" description="Archaeal Nre C-terminal" evidence="3">
        <location>
            <begin position="292"/>
            <end position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="402" mass="45235" checksum="88840F7B11344D40" modified="2008-05-20" version="1">MRSDLCVRCRGGRYLCGLSYCPLLVRQMAAPSRAARELLGSSPPSVFVGRVGYPKVRIYPSAPPELGDTSLYEDAGRWLEIPLEKFIAMRLSLYRGGLEIRVDNAADPPRPLQEIQLIALSERPVDVDLRFRREPRGVYLSEYAPPMGPSAPLAEFKTEGSPRLPKLAERAYGDFDLDAREAVLTLYRSGLDVGYISRALSVGALGARRRRRLVPTRWAITAVDKIVSDHLVEEIKRFDTVDGYYLYLRRAPGNLFLVILAPSRWAYEWGEAFEPGTVWNPGPGLAVEADHELYRGRDVYPEIGGCYYAARLAAAEALYRMRRQAAVVAWREVYRGFTAPVGVWWVRENVRAALRGEPARFDSLEDALYAASLLLKVPLERWLSASRLIHILRSRLPGVGQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBB2</accession>
    <name>B1YBB2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cobalamin (Vitamin B12) biosynthesis CbiG protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0291</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349664.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBB2"/>
    <dbReference type="STRING" id="444157.Tneu_0291"/>
    <dbReference type="GeneID" id="6165799"/>
    <dbReference type="KEGG" id="tne:Tneu_0291"/>
    <dbReference type="eggNOG" id="arCOG00651">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028397_0_2_2"/>
    <dbReference type="OrthoDB" id="4722at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.180">
        <property type="entry name" value="CobE/GbiG C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052553">
        <property type="entry name" value="CbiG_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021744">
        <property type="entry name" value="CbiG_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002750">
        <property type="entry name" value="CobE/GbiG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036518">
        <property type="entry name" value="CobE/GbiG_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038029">
        <property type="entry name" value="GbiG_N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004467">
        <property type="entry name" value="PRK05788.1-5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37477">
        <property type="entry name" value="COBALT-PRECORRIN-5A HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37477:SF1">
        <property type="entry name" value="COBALT-PRECORRIN-5A HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01890">
        <property type="entry name" value="CbiG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11760">
        <property type="entry name" value="CbiG_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159672">
        <property type="entry name" value="CbiG N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159664">
        <property type="entry name" value="CobE/GbiG C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cobalamin synthesis G N-terminal" evidence="2">
        <location>
            <begin position="43"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="CobE/GbiG C-terminal" evidence="1">
        <location>
            <begin position="200"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="319" mass="33131" checksum="23D8B2AA44BC36EB" modified="2008-05-20" version="1">MLELLWRGAAVFYAGAGPPPAAERLVEELKARGVPAHLLNNGMLAEAWGCYDAFIFVEALGGVVRLLCPLLRDKERDPPVLVVEREGRFVIPLVGSHRGANELARELAEMLGGVAVVTTAVDAAGAHPAEDFERYMLCDMGREGRLLVNKALKEGRRVCVEGGRLPPYLRGYAEGGGCDVVIKLGEGCGPGEVCCRPAALYVGVGARSEATPAEVAEAVKKALEAVGVGLDRVAAVASIKPVALKAAEALGVKAVLYSPEELREGAASPCLSPPSQKALEAVGLPGVAELAALKAAGEGGRLIYRKRAAGGVTVAIAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBE0</accession>
    <name>B1YBE0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Citramalate synthase</fullName>
            <ecNumber evidence="7">2.3.3.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_0320</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-isoleucine biosynthesis; 2-oxobutanoate from pyruvate: step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the alpha-IPM synthase/homocitrate synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.21" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349692.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBE0"/>
    <dbReference type="STRING" id="444157.Tneu_0320"/>
    <dbReference type="GeneID" id="6165361"/>
    <dbReference type="KEGG" id="tne:Tneu_0320"/>
    <dbReference type="eggNOG" id="arCOG02092">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022158_7_0_2"/>
    <dbReference type="OrthoDB" id="6555at2157"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043714">
        <property type="term" value="F:(R)-citramalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003852">
        <property type="term" value="F:2-isopropylmalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:L-leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07941">
        <property type="entry name" value="DRE_TIM_LeuA3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013709">
        <property type="entry name" value="2-isopropylmalate_synth_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002034">
        <property type="entry name" value="AIPM/Hcit_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005675">
        <property type="entry name" value="Citramal_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054691">
        <property type="entry name" value="LeuA/HCS_post-cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036230">
        <property type="entry name" value="LeuA_allosteric_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00977">
        <property type="entry name" value="citramal_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43538:SF1">
        <property type="entry name" value="(R)-CITRAMALATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43538">
        <property type="entry name" value="ALPHA-IPM SYNTHASE/HOMOCITRATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22617">
        <property type="entry name" value="HCS_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08502">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00917">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110921">
        <property type="entry name" value="2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51569">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00815">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00816">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0412">Isoleucine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="9">
        <location>
            <begin position="13"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="NCBIfam" id="TIGR00977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="544" mass="60379" checksum="DF33E780D24477BC" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBF7</accession>
    <name>B1YBF7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Homoserine dehydrogenase</fullName>
            <ecNumber evidence="4">1.1.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Tneu_1842</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 3/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the homoserine dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.3" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351178.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBF7"/>
    <dbReference type="STRING" id="444157.Tneu_1842"/>
    <dbReference type="GeneID" id="6164756"/>
    <dbReference type="KEGG" id="tne:Tneu_1842"/>
    <dbReference type="eggNOG" id="arCOG01351">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009116_1_2_2"/>
    <dbReference type="OrthoDB" id="4488at2157"/>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00063"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004412">
        <property type="term" value="F:homoserine dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.10">
        <property type="entry name" value="Dihydrodipicolinate Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005106">
        <property type="entry name" value="Asp/hSer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001342">
        <property type="entry name" value="HDH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022697">
        <property type="entry name" value="HDH_short"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43331">
        <property type="entry name" value="HOMOSERINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43331:SF1">
        <property type="entry name" value="HOMOSERINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00742">
        <property type="entry name" value="Homoserine_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03447">
        <property type="entry name" value="NAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036497">
        <property type="entry name" value="HDH_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55347">
        <property type="entry name" value="Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="11" id="KW-0521">NADP</keyword>
    <keyword evidence="8 14" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0791">Threonine biosynthesis</keyword>
    <feature type="domain" description="Aspartate/homoserine dehydrogenase NAD-binding" evidence="13">
        <location>
            <begin position="6"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Homoserine dehydrogenase catalytic" evidence="12">
        <location>
            <begin position="143"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="10">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="6"/>
            <end position="11"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>NADPH</name>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>L-homoserine</name>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR036497-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR036497-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF03447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB40759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="303" mass="32340" checksum="AD7588614D252AE1" modified="2008-05-20" version="1">MILLFGFGGVGRTYAELLYERTNVKIAAVFDSGGGAMKKGGFTPAELKKLLEAPRGKVSQAAGRPASIEEALEEAEVVVDVSPPNYSDGRPAVEVYRRALAAGRAVVTANKAPLALYFQEFRGRPIYYKATVMAGTPLLDLARGLPPQRVTKIRAILNGSTNYILTRVYKDGVPEGDAVEEAKRLGILEPDPSLDLGGVDAAAKLTILLNTLGVAIQLSAVERKPLEFLGPVTKYLATWDGAKAAVQPVRLPPEDPLAKIDYTLNAAEVVTEVNTIFVSGKGAGRKETALVLINDTLKALKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBI6</accession>
    <name>B1YBI6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Bacterial repeat domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1873</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351207.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBI6"/>
    <dbReference type="STRING" id="444157.Tneu_1873"/>
    <dbReference type="GeneID" id="6166291"/>
    <dbReference type="KEGG" id="tne:Tneu_1873"/>
    <dbReference type="eggNOG" id="arCOG05471">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_452457_0_0_2"/>
    <dbReference type="OrthoDB" id="28655at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="578"/>
            <end position="596"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="603" mass="63294" checksum="B3EEB935F298E327" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBJ4</accession>
    <name>B1YBJ4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phosphomethylpyrimidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1881</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBJ4"/>
    <dbReference type="STRING" id="444157.Tneu_1881"/>
    <dbReference type="KEGG" id="tne:Tneu_1881"/>
    <dbReference type="eggNOG" id="arCOG00020">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035788_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008902">
        <property type="term" value="F:hydroxymethylpyrimidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008972">
        <property type="term" value="F:phosphomethylpyrimidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01169">
        <property type="entry name" value="HMPP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1190.20:FF:000003">
        <property type="entry name" value="Phosphomethylpyrimidine kinase ThiD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="entry name" value="Class II aldolase/adducin N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004399">
        <property type="entry name" value="HMP/HMP-P_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013749">
        <property type="entry name" value="PM/HMP-P_kinase-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019293">
        <property type="entry name" value="ThiN"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00097">
        <property type="entry name" value="HMP-P_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006346">
        <property type="entry name" value="PRK08573.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20858:SF17">
        <property type="entry name" value="HYDROXYMETHYLPYRIMIDINE_PHOSPHOMETHYLPYRIMIDINE KINASE THI20-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20858">
        <property type="entry name" value="PHOSPHOMETHYLPYRIMIDINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08543">
        <property type="entry name" value="Phos_pyr_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10120">
        <property type="entry name" value="ThiN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="AraD/HMP-PK domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="Ribokinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyridoxamine kinase/Phosphomethylpyrimidine kinase" evidence="5">
        <location>
            <begin position="7"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="domain" description="Thiamine-phosphate synthase ThiN" evidence="6">
        <location>
            <begin position="268"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF10120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="444" mass="48132" checksum="C16A87F38F7B3E35" modified="2008-05-20" version="1">MTIAGLDSGGGAGIHADVKTFAAMGVHGTTALTCVTAQNTYEVREAQCLQPPLVKAQILAVWDDMGIDAGKTGMLGTREIIEEVAATVSKLGFPLVVDPVMIAKSGAPLISEDAVDTLKRRLLPVAKVVTPNRHEAEKLTGIKITSVAEARRAAEVIHREFGTEVVVVKGGHLDAPEAVDVVYIGGTFHELATPRLDSRATHGTGCSYSAAIAAGLAKGLPPLEAIKTAKRFIYMAIRYGVARGKGHWPVNPMAWLEMPAERWRTLEELREALEAVERQAEVFAKAIPEVQTNIGYAIDPRYATTREDVAAVPGRIVNYMGRAKPSGPPAFGASDHIARKILAALAKDPQARSAMNIRLDAAYIEKAKSLGMTIAYVDRRREPEDVKKREGATMQWIIEEAYRQTGGKTPDLIVDWGDWGKEPIITVLGKTPREVVEKVLRLIR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-09-01" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBL3</accession>
    <name>GSA_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glutamate-1-semialdehyde 2,1-aminomutase</fullName>
            <shortName evidence="1">GSA</shortName>
            <ecNumber evidence="1">5.4.3.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Glutamate-1-semialdehyde aminotransferase</fullName>
            <shortName evidence="1">GSA-AT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hemL</name>
        <name type="ordered locus">Tneu_1900</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(S)-4-amino-5-oxopentanoate = 5-aminolevulinate</text>
            <dbReference type="Rhea" id="RHEA:14265"/>
            <dbReference type="ChEBI" id="CHEBI:57501"/>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <dbReference type="EC" id="5.4.3.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.4.3.8" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351234.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBL3"/>
    <dbReference type="SMR" id="B1YBL3"/>
    <dbReference type="STRING" id="444157.Tneu_1900"/>
    <dbReference type="GeneID" id="6164885"/>
    <dbReference type="KEGG" id="tne:Tneu_1900"/>
    <dbReference type="eggNOG" id="arCOG00918">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016922_1_5_2"/>
    <dbReference type="OrthoDB" id="6524at2157"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00317"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042286">
        <property type="term" value="F:glutamate-1-semialdehyde 2,1-aminomutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.640.10:FF:000021">
        <property type="entry name" value="Glutamate-1-semialdehyde 2,1-aminomutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00375">
        <property type="entry name" value="HemL_aminotrans_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004639">
        <property type="entry name" value="4pyrrol_synth_GluAld_NH2Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049704">
        <property type="entry name" value="Aminotrans_3_PPA_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00713">
        <property type="entry name" value="hemL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF000818">
        <property type="entry name" value="PRK00062.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43713">
        <property type="entry name" value="GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43713:SF3">
        <property type="entry name" value="GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 1, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0413">Isomerase</keyword>
    <keyword id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000382419" description="Glutamate-1-semialdehyde 2,1-aminomutase">
        <location>
            <begin position="1"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="1">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00375"/>
        </source>
    </evidence>
    <sequence length="424" mass="45828" checksum="2D894A1EFD2F1F62" modified="2008-05-20" version="1">MLFERARGVFPGGVNSPARALKHLAAPLVANGASGPYLYTDRGRLVDYCMAFGAIILGHAHPRVKNAVAKQLERGWIYALLTEEEVAYAERIKAHVPSIEKMRIVNSGTEATMNAVRLARGYTRRDVIIKFDGNFHGSHDYVLVKAGSGAATWGVPTSAGVPQDVIKLTAVVPYNDVDAFVKAVREVGGRLAAVIVEPIAANYGLIIPDREFIKALREETERAGALLIFDEVVTGFRVGLSGAQGHFGVRPDLTTLGKVVGGGFPIGIFGGRADVMDMVAPSGPVYNAGTYNAHPVSVAAGLAVVEELERGEPYKIANEAAERLARGIEDIAGRVGFDVVVKQIASMFQLYFRRGDVKTPQDVRESDERLYLKLHELAIKHGVYLAPSQYETNFTSAAHTRDVVETTLAALEKAFTELKSQVGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBM7</accession>
    <name>B1YBM7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">N5-carboxyaminoimidazole ribonucleotide synthase</fullName>
            <shortName evidence="4">N5-CAIR synthase</shortName>
            <ecNumber evidence="4">6.3.4.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">5-(carboxyamino)imidazole ribonucleotide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">purK</name>
        <name evidence="7" type="ordered locus">Tneu_1914</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>5-amino-1-(5-phospho-beta-D-ribosyl)imidazole + hydrogencarbonate + ATP = 5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole + ADP + phosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:19317"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58730"/>
            <dbReference type="ChEBI" id="CHEBI:137981"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate from 5-amino-1-(5-phospho-D-ribosyl)imidazole (N5-CAIR route): step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the PurK/PurT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.18" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351248.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBM7"/>
    <dbReference type="STRING" id="444157.Tneu_1914"/>
    <dbReference type="GeneID" id="6164923"/>
    <dbReference type="KEGG" id="tne:Tneu_1914"/>
    <dbReference type="eggNOG" id="arCOG01597">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011534_0_0_2"/>
    <dbReference type="OrthoDB" id="9299at2157"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00942"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034028">
        <property type="term" value="F:5-(carboxyamino)imidazole ribonucleotide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004638">
        <property type="term" value="F:phosphoribosylaminoimidazole carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="entry name" value="ATP-grasp fold, A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01928">
        <property type="entry name" value="PurK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003135">
        <property type="entry name" value="ATP-grasp_carboxylate-amine"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005875">
        <property type="entry name" value="PurK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040686">
        <property type="entry name" value="PurK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054350">
        <property type="entry name" value="PurT/PurK_preATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11609:SF5">
        <property type="entry name" value="PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11609">
        <property type="entry name" value="PURINE BIOSYNTHESIS PROTEIN 6/7, PUR6/7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02222">
        <property type="entry name" value="ATP-grasp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17769">
        <property type="entry name" value="PurK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22660">
        <property type="entry name" value="RS_preATP-grasp-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="PreATP-grasp domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="Rudiment single hybrid motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="1 4 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 4" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="6">
        <location>
            <begin position="95"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="135"/>
            <end position="141"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="158"/>
            <end position="161"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="239"/>
            <end position="240"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="358" mass="40455" checksum="5483840BF700CE08" modified="2008-05-20" version="1">MRLLVLGGGQLALMMCWATARLPLDFAVYDPDPKAPAYRCAARAGDPLREVERADHVTFEFENVEWGVAEYAHKLGKLRPHLDYLRVKKSRIWEREALGELGVPTPRWAVARDGAEAMELAAKWGRAVAKVPSGGYDGKGQYLLPRERPPAESPLLVEEYVDIAREFSIVAARSEDGDVYFYPPAQNYYVQGILVWNYAPAEAPPEAYRYVEKILEWRRYVGVLAVEFFEDRSGRILVNEIAPRVHNTGHWTLETDASQFENHVRAVAGLPLRRPRALAPTAMVNLLGVASPPIKELERLGKVYWYGKAEARPRRKMGHVNITGDTTAEAIAKAREAMRIIYGRKFPELVLKNYGSRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBN6</accession>
    <name>B1YBN6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ArnR1-like winged helix-turn-helix domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1923</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351257.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBN6"/>
    <dbReference type="STRING" id="444157.Tneu_1923"/>
    <dbReference type="GeneID" id="6164859"/>
    <dbReference type="KEGG" id="tne:Tneu_1923"/>
    <dbReference type="eggNOG" id="arCOG01061">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_179023_1_0_2"/>
    <dbReference type="OrthoDB" id="26774at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038723">
        <property type="entry name" value="ArnR1-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14947">
        <property type="entry name" value="HTH_45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ArnR1-like winged helix-turn-helix" evidence="1">
        <location>
            <begin position="6"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="78" mass="8927" checksum="7F0B2CB63F1B7A24" modified="2008-05-20" version="1">MAKFDLDVVARILLLLLRGPMGRTALYMRTKLNYPRYLEYLEYLRERGLIAERDGVVTLTEKGVEVAKALDKALGELL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBQ4</accession>
    <name>B1YBQ4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Nitrate reductase gamma subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0338</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349709.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBQ4"/>
    <dbReference type="STRING" id="444157.Tneu_0338"/>
    <dbReference type="GeneID" id="6165262"/>
    <dbReference type="KEGG" id="tne:Tneu_0338"/>
    <dbReference type="eggNOG" id="arCOG02196">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_946411_0_0_2"/>
    <dbReference type="OrthoDB" id="371868at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.950.20">
        <property type="entry name" value="Transmembrane di-heme cytochromes, Chain C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023234">
        <property type="entry name" value="NarG-like_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036197">
        <property type="entry name" value="NarG-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02665">
        <property type="entry name" value="Nitrate_red_gam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103501">
        <property type="entry name" value="Respiratory nitrate reductase 1 gamma chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="96"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="139"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="185"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="223"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="NarG-like" evidence="8">
        <location>
            <begin position="92"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="302" mass="35076" checksum="383E33A9243D35B4" modified="2008-05-20" version="1">MSYNIESIMLYISYVTFTIFIIGIIHKWSRWASMPIHLRWELYPVSHEKKAEYGGSYLEEVDWAKKTREVTKIGELKEMLEEMLFIKRIYLMNKRLWFLSWFFHFGIYLILVWFLALFLSAITMSLGVQIPSSNPWAYFLYYATLITGGLGAIMTIIGGIGLLIRRLSDPVLRDYTTWPDYLNTVLVLITVATGLAAWIYDPAFDLARKFMLSLVTFSQPPPLPTITTVNIALIQLLLIYIPFSKITHFIGKYFTYHKILWDDEPNTGQLDGRISELLRLPLRWSAPHIRSGETWEKNAAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBQ6</accession>
    <name>B1YBQ6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0340</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349711.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBQ6"/>
    <dbReference type="STRING" id="444157.Tneu_0340"/>
    <dbReference type="GeneID" id="6165187"/>
    <dbReference type="KEGG" id="tne:Tneu_0340"/>
    <dbReference type="eggNOG" id="arCOG06063">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1465167_0_0_2"/>
    <dbReference type="OrthoDB" id="23396at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="200" mass="22710" checksum="351809B9272E3C43" modified="2008-05-20" version="1">MAYEAPDHFTIKILDTVLSEELRGEPGVTPYQIMRKLGLYPSFLYKNIKVLERRNYLVCKEAGRGKKCSTTVGGLLAFLKVVKDYDKYVYLFFRKLGFGSPPMDLRDAKTLLSLIIDGGTTPKDIYDLFVWSLLHCENSVVAKFLKALSGILGITLVMTPHMVYVKRNGTEICTCRYSNCGLEMCKLKLAVREFLEIQKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC18</accession>
    <name>B1YC18_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc finger C2H2-type domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1957</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351291.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC18"/>
    <dbReference type="STRING" id="444157.Tneu_1957"/>
    <dbReference type="GeneID" id="6164521"/>
    <dbReference type="KEGG" id="tne:Tneu_1957"/>
    <dbReference type="eggNOG" id="arCOG05444">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2217198_0_0_2"/>
    <dbReference type="OrthoDB" id="24509at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.60">
        <property type="entry name" value="Classic Zinc Finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036236">
        <property type="entry name" value="Znf_C2H2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13894">
        <property type="entry name" value="zf-C2H2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00355">
        <property type="entry name" value="ZnF_C2H2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57667">
        <property type="entry name" value="beta-beta-alpha zinc fingers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50157">
        <property type="entry name" value="ZINC_FINGER_C2H2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C2H2-type" evidence="1">
        <location>
            <begin position="80"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="104" mass="11592" checksum="AF7DC5D115C54963" modified="2008-05-20" version="1">MAAEMCFACTEQGYAKPATKVVCSVCKKEVSWREAVAHYMGHGKKSGNDVICPICNTKVKGQEFRSHVRRHFAVRRGASYLCGICGKSFLTLKSLLVHLMKTHE</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="94" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC22</accession>
    <name>AATA_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">A-type ATP synthase subunit A</fullName>
            <ecNumber evidence="1">7.1.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">atpA</name>
        <name type="ordered locus">Tneu_1961</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Component of the A-type ATP synthase that produces ATP from ADP in the presence of a proton gradient across the membrane. The A chain is the catalytic subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + 4 H(+)(in) = ADP + phosphate + 5 H(+)(out)</text>
            <dbReference type="Rhea" id="RHEA:57720"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.1.2.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Has multiple subunits with at least A(3), B(3), C, D, E, F, H, I and proteolipid K(x).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <dbReference type="EC" id="7.1.2.2" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351295.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC22"/>
    <dbReference type="SMR" id="B1YC22"/>
    <dbReference type="STRING" id="444157.Tneu_1961"/>
    <dbReference type="GeneID" id="6164391"/>
    <dbReference type="KEGG" id="tne:Tneu_1961"/>
    <dbReference type="eggNOG" id="arCOG00868">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008162_3_1_2"/>
    <dbReference type="OrthoDB" id="115235at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042777">
        <property type="term" value="P:proton motive force-driven plasma membrane ATP synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18111">
        <property type="entry name" value="ATP-synt_V_A-type_alpha_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18119">
        <property type="entry name" value="ATP-synt_V_A-type_alpha_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01134">
        <property type="entry name" value="V_A-ATPase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.20:FF:000002">
        <property type="entry name" value="V-type proton ATPase catalytic subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1140.10">
        <property type="entry name" value="Bovine Mitochondrial F1-atpase, Atp Synthase Beta Chain, Chain D, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00309">
        <property type="entry name" value="ATP_synth_A_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055190">
        <property type="entry name" value="ATP-synt_VA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031686">
        <property type="entry name" value="ATP-synth_a_Xtn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023366">
        <property type="entry name" value="ATP_synth_asu-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004100">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036121">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024034">
        <property type="entry name" value="ATPase_F1/V1_b/a_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022878">
        <property type="entry name" value="V-ATPase_asu"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003220">
        <property type="entry name" value="PRK04192.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43607:SF1">
        <property type="entry name" value="H(+)-TRANSPORTING TWO-SECTOR ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43607">
        <property type="entry name" value="V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02874">
        <property type="entry name" value="ATP-synt_ab_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16886">
        <property type="entry name" value="ATP-synt_ab_Xtn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22919">
        <property type="entry name" value="ATP-synt_VA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47917">
        <property type="entry name" value="C-terminal domain of alpha and beta subunits of F1 ATP synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50615">
        <property type="entry name" value="N-terminal domain of alpha and beta subunits of F1 ATP synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0066">ATP synthesis</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0375">Hydrogen ion transport</keyword>
    <keyword id="KW-0406">Ion transport</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-1278">Translocase</keyword>
    <keyword id="KW-0813">Transport</keyword>
    <feature type="chain" id="PRO_1000115646" description="A-type ATP synthase subunit A">
        <location>
            <begin position="1"/>
            <end position="594"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="236"/>
            <end position="243"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00309"/>
        </source>
    </evidence>
    <sequence length="594" mass="66141" checksum="1FB408CB679F2A48" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC62</accession>
    <name>B1YC62_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_2002</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351335.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC62"/>
    <dbReference type="STRING" id="444157.Tneu_2002"/>
    <dbReference type="GeneID" id="6165988"/>
    <dbReference type="KEGG" id="tne:Tneu_2002"/>
    <dbReference type="eggNOG" id="arCOG05449">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1998859_0_0_2"/>
    <dbReference type="OrthoDB" id="26896at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="127" mass="14270" checksum="4036EC7DB8179989" modified="2008-05-20" version="1">MKSVVEEKMKNLSKLRVYMLVESTGPDISGEIGSFFSEALIRPMEVRAGGLHIAVTFLWSLLNRVAKQLEEAGEQVVDMEFGRGKTTILTKSGYVINILVKVRQNQYVSEIEGVVDVEESPFKIEDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC82</accession>
    <name>B1YC82_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Carbon starvation protein CstA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0448</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349815.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC82"/>
    <dbReference type="STRING" id="444157.Tneu_0448"/>
    <dbReference type="GeneID" id="6166022"/>
    <dbReference type="KEGG" id="tne:Tneu_0448"/>
    <dbReference type="eggNOG" id="arCOG04286">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010531_4_1_2"/>
    <dbReference type="OrthoDB" id="77715at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009267">
        <property type="term" value="P:cellular response to starvation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051605">
        <property type="entry name" value="CstA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003706">
        <property type="entry name" value="CstA_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30252">
        <property type="entry name" value="INNER MEMBRANE PEPTIDE TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30252:SF0">
        <property type="entry name" value="PEPTIDE TRANSPORTER CSTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02554">
        <property type="entry name" value="CstA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="82"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="135"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="161"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="190"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="236"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="270"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="319"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="361"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="406"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="450"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="481"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="504"/>
            <end position="529"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="549"/>
            <end position="577"/>
        </location>
    </feature>
    <feature type="domain" description="CstA N-terminal" evidence="7">
        <location>
            <begin position="9"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="domain" description="CstA N-terminal" evidence="7">
        <location>
            <begin position="384"/>
            <end position="518"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="588" mass="65012" checksum="27AC6CCE0938C042" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC91</accession>
    <name>B1YC91_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutamine amidotransferase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0457</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349824.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC91"/>
    <dbReference type="STRING" id="444157.Tneu_0457"/>
    <dbReference type="GeneID" id="6165945"/>
    <dbReference type="KEGG" id="tne:Tneu_0457"/>
    <dbReference type="eggNOG" id="arCOG03639">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1253632_0_0_2"/>
    <dbReference type="OrthoDB" id="350529at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01908">
        <property type="entry name" value="YafJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="entry name" value="Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42824">
        <property type="entry name" value="GLUTAMINE AMIDOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42824:SF1">
        <property type="entry name" value="GLUTAMINE AMIDOTRANSFERASE YAFJ-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13522">
        <property type="entry name" value="GATase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="1">
        <location>
            <begin position="2"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="220" mass="24224" checksum="184E0A30468C1DCF" modified="2008-05-20" version="1">MCRILFSLGKPPREILLDFVQVSRRDRTMGWSHGSGWGALWARPGSYGLYKSTKPIWEDYVEPPDGYMLYILHSRLASVGEPALENTHPIVRGRYAIAHNGTIDKERYRAALREAGVEVGELDGSTDSELLLKAVVALGGDEAAVKKAAELAKPHLDPQEPVLNFVFVDLAGLAIFYTYRGEEHPHFVPVEKDGVVASEPLGDGGGWRPLENGKTVVAKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC99</accession>
    <name>B1YC99_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0465</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349832.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC99"/>
    <dbReference type="STRING" id="444157.Tneu_0465"/>
    <dbReference type="GeneID" id="6165953"/>
    <dbReference type="KEGG" id="tne:Tneu_0465"/>
    <dbReference type="eggNOG" id="arCOG07436">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1192659_0_0_2"/>
    <dbReference type="OrthoDB" id="29172at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="136"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="213"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="232" mass="24311" checksum="C2D70D966358B431" modified="2008-05-20" version="1">MDWGRVALWFYAGFFAGALSTASREGAYASIVLFPVLIFAGEDPFAVLLGFAIAAAVAIALNLAASRKAVQGPIFRVGSLTALAGIAAGFLAFLLLPLPILKYLVAAAMFATGGRLLADAAWGPREFHLKHPAARVALNFLVGVLDVFIGTAASFALARAFVRELEALLPAARVSEVALSVELKHRVVMGGFVAGLGIFLGQRLVSCSGNQRLLDAAMGLLITATGFVYLFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCD6</accession>
    <name>B1YCD6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase beta domain protein region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0506</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349869.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCD6"/>
    <dbReference type="STRING" id="444157.Tneu_0506"/>
    <dbReference type="GeneID" id="6165923"/>
    <dbReference type="KEGG" id="tne:Tneu_0506"/>
    <dbReference type="eggNOG" id="arCOG01205">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_159724_0_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05403">
        <property type="entry name" value="NT_KNTase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="entry name" value="Beta Polymerase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37030">
        <property type="entry name" value="NUCLEOTIDYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37030:SF1">
        <property type="entry name" value="NUCLEOTIDYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="Nucleotidyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Polymerase nucleotidyl transferase" evidence="1">
        <location>
            <begin position="34"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="121" mass="14229" checksum="7C60E11DDFDF6016" modified="2008-05-20" version="1">MRLEEPRRPPWLEAAMRRRKYLENWRTYAAEICREARRHLGDARVVVFGSVVRGDWTPDSDIDILIISEKAPQDPTERAKINTALREAIGDYAAPFEFHYATPRQYAEWYSRFIDAKAEIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCI7</accession>
    <name>B1YCI7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0558</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349920.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCI7"/>
    <dbReference type="GeneID" id="6165714"/>
    <dbReference type="KEGG" id="tne:Tneu_0558"/>
    <dbReference type="eggNOG" id="arCOG01586">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2353315_0_0_2"/>
    <dbReference type="OrthoDB" id="24108at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="96" mass="10831" checksum="6A980FDE74F046F2" modified="2008-05-20" version="1">MEFLTYDERNILTMLVTESWASSIAKRLGEPQQPAWYTPSRLKEAGAAGEPMHYVRPDHAGLHYASFQSPTEPGDGAFETLEGTHIFAMPFRTEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="35" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCJ9</accession>
    <name>B1YCJ9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0570</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349932.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCJ9"/>
    <dbReference type="STRING" id="444157.Tneu_0570"/>
    <dbReference type="GeneID" id="6165828"/>
    <dbReference type="KEGG" id="tne:Tneu_0570"/>
    <dbReference type="HOGENOM" id="CLU_1881155_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="135" mass="14855" checksum="5FE60DAB80F8AABB" modified="2008-05-20" version="1">MPTFKLDPVQGRCTSQLNFPCDGYCICAPDPNNAKCGGNLLCATPGQLDWCIAQADRPKVKIAVECMCDLTSFRATHKIAEKVIRQIGSYASICTPVEKWAAFPPDWPEELEETLRQSGIKIVDCGDVPCDLCRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="38" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCK4</accession>
    <name>B1YCK4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0575</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349937.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCK4"/>
    <dbReference type="GeneID" id="6165716"/>
    <dbReference type="KEGG" id="tne:Tneu_0575"/>
    <dbReference type="eggNOG" id="arCOG05421">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1987701_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="121" mass="13923" checksum="DA9DBB07C3483330" modified="2008-05-20" version="1">MYLYFGRVRVGPLVGYLWLLGRRLYLRVGWRPRDTVYLGSVDDLLGVAVRVRRLVPRPLPVRHLVAALVDALKKAYYVASRYRDSPRWKIRAWEAAMAIEYAASALAMYWPSAAKKILDDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCM9</accession>
    <name>B1YCM9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Purine or other phosphorylase family 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0603</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349962.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCM9"/>
    <dbReference type="STRING" id="444157.Tneu_0603"/>
    <dbReference type="GeneID" id="6165482"/>
    <dbReference type="KEGG" id="tne:Tneu_0603"/>
    <dbReference type="eggNOG" id="arCOG01324">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068457_0_1_2"/>
    <dbReference type="OrthoDB" id="372263at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009116">
        <property type="term" value="P:nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="entry name" value="Nucleoside phosphorylase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43691:SF11">
        <property type="entry name" value="FI09636P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43691">
        <property type="entry name" value="URIDINE PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="Purine and uridine phosphorylases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nucleoside phosphorylase" evidence="1">
        <location>
            <begin position="15"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="222" mass="23652" checksum="DDF8CCF7096C5957" modified="2008-05-20" version="1">MPYHIWARPGEVAPVVVGVGDPARARLFASLLEEAKLVNENRYPVYTGRAGGRAVSVVAHGIGGPSAAIALEELRTLGMEVFVRIGTAGSFGDLKVGDVLVAAAAAAPQGGLLNSYFPGFSPPLSADPRLTVRLAEALGAPVGYVVSSDAFYAEDPQFVEFWRRRGALAVEMECATAMALGWLRGFRTGCVLVVSNVVGRHEVVDLRERFVEVFRRVVEAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCQ0</accession>
    <name>B1YCQ0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Translin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0624</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349983.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCQ0"/>
    <dbReference type="STRING" id="444157.Tneu_0624"/>
    <dbReference type="GeneID" id="6166275"/>
    <dbReference type="KEGG" id="tne:Tneu_0624"/>
    <dbReference type="eggNOG" id="arCOG04318">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_099315_0_0_2"/>
    <dbReference type="OrthoDB" id="26985at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14820">
        <property type="entry name" value="TRAX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.2140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002848">
        <property type="entry name" value="Translin_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036081">
        <property type="entry name" value="Translin_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF011157">
        <property type="entry name" value="PRK14562.1-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10741">
        <property type="entry name" value="TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01997">
        <property type="entry name" value="Translin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74784">
        <property type="entry name" value="Translin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="4"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR602848-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="190" mass="21811" checksum="82C31B8C1CEC0F32" modified="2008-05-20" version="1">MIKAEELHGELRRYEQAKDEVIQTSIKVARLSKAVVYSTIRKDFSSAEKALREMEEVVAKLKRLIQEWPMFYGNATTGLQEYVEATALYLYIKEGRLPTKEELGVDVYTYLMGIADIAGELGRSATEELLKKNVEAARRLKDAVESLYLDLLALEPRDYELRKKVDYVGSQANWISEKLFYATTCRQSPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCT6</accession>
    <name>B1YCT6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glycosyl transferase family 2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0660</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350019.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCT6"/>
    <dbReference type="STRING" id="444157.Tneu_0660"/>
    <dbReference type="GeneID" id="6165185"/>
    <dbReference type="KEGG" id="tne:Tneu_0660"/>
    <dbReference type="eggNOG" id="arCOG01389">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_910959_0_0_2"/>
    <dbReference type="OrthoDB" id="28090at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="224"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="305" mass="34374" checksum="D87D9658F6D1198A" modified="2008-05-20" version="1">MLPLIAAIAIYDFIHLLTEIRIRPGRLAPCRSVVVMATRGVKGWGRYRDFVDYVVVDDRRTAEEAEAAGLRALLNKYGGKSGALATALEELEAELYIFVDDDAVPGPWLDLLRRSCGRFATAYRWVLDRFQNAFSLGGFDWMVWKKTRFMYGGAMAIPGHRRREVAEALKVCPVDDMAVTAVAEDIEVLPYLVPMEPADGAWEFFIRQATAAKIGNAALWAMELVYYGLWTAAAVLFPPLFLLQAARTALRSRRALGRVDWVQVLLSPIERPLQFAVFLATIPRRCFRWRGRIVCGCSRQSRLPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCU8</accession>
    <name>B1YCU8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0672</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCU8"/>
    <dbReference type="STRING" id="444157.Tneu_0672"/>
    <dbReference type="KEGG" id="tne:Tneu_0672"/>
    <dbReference type="eggNOG" id="arCOG05522">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1243092_0_0_2"/>
    <dbReference type="OrthoDB" id="27387at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="225" mass="25398" checksum="49459270EB41C60A" modified="2008-05-20" version="1">MAAALQRSITFPPIRIQKLDSYVIHVAKNAVSLKELREAGLEFGRGRGDITRFLERLGVVEVADGVVRLTGLGMRLVSLRELIGVSVYYALFYQRVPQFKLLMEVLRERSAVEREELYKLVNGKLSELSPTAWLNKVAFRTLLQLAEELGAVDRDGGSYRYLGDPVERAVATYYGRHGVKIGQSLYVPPDKVLTRECGREKPPQGLYEVDLRCTVWSLYSIFATT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCV5</accession>
    <name>B1YCV5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sjogrens syndrome scleroderma autoantigen 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0679</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350038.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCV5"/>
    <dbReference type="GeneID" id="6165240"/>
    <dbReference type="KEGG" id="tne:Tneu_0679"/>
    <dbReference type="eggNOG" id="arCOG00578">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_142653_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009563">
        <property type="entry name" value="SSSCA1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06677">
        <property type="entry name" value="Auto_anti-p27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="124" mass="14060" checksum="A70654FD68C86887" modified="2008-05-20" version="1">MERSDVVKKIAQLVRAGAALTPYTCPACGTVLVRLKTGELYCANCEKTVVLVKTEEEAQEKLEVIQLREVRRIVFDKILQLGRELEKLSASEMVDHLRSMSLLLDIYERLSRVQSESSRRHAAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCW5</accession>
    <name>B1YCW5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0689</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350048.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCW5"/>
    <dbReference type="STRING" id="444157.Tneu_0689"/>
    <dbReference type="GeneID" id="6165485"/>
    <dbReference type="KEGG" id="tne:Tneu_0689"/>
    <dbReference type="eggNOG" id="arCOG04060">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077869_0_0_2"/>
    <dbReference type="OrthoDB" id="371772at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="entry name" value="lambda repressor-like DNA-binding domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017271">
        <property type="entry name" value="Tscrpt_reg_HTH_MJ1545_prd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12844">
        <property type="entry name" value="HTH_19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037724">
        <property type="entry name" value="TF_HTH_MJ1545_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="lambda repressor-like DNA-binding domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="24"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="237" mass="26340" checksum="C35F5CF26AC73CED" modified="2008-05-20" version="1">MSYQHIGVYIAGDIIMSDNPGEAIKKWRLIFGLTQTAVASRLNTSPSVISDYESGRRKFPGSRFVKKFVQALIDSDLERGGLVLSLLERQLLREKFWVAVLDMREFSEPVPISTFLQAIEAEVLVRPAQDSDIHGYTVVDSVKLALEVPPVEYVRLYGSTSQRAAVFTKVSTGRSPMIAIKSMSSVLSIRPSIVVLHGIKPEAVDPLAVEIAKRSYIPLAVTTMPIEKLIENLRQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCW6</accession>
    <name>B1YCW6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Large ribosomal subunit protein eL13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpl13e</name>
        <name evidence="5" type="ordered locus">Tneu_0690</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the eukaryotic ribosomal protein eL13 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350049.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCW6"/>
    <dbReference type="STRING" id="444157.Tneu_0690"/>
    <dbReference type="GeneID" id="6165487"/>
    <dbReference type="KEGG" id="tne:Tneu_0690"/>
    <dbReference type="eggNOG" id="arCOG01013">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1674077_0_0_2"/>
    <dbReference type="OrthoDB" id="17872at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00499">
        <property type="entry name" value="Ribosomal_eL13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001380">
        <property type="entry name" value="Ribosomal_eL13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018256">
        <property type="entry name" value="Ribosomal_eL13_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012678">
        <property type="entry name" value="Ribosomal_uL23/eL15/eS24_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01294">
        <property type="entry name" value="Ribosomal_L13e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54189">
        <property type="entry name" value="Ribosomal proteins S24e, L23 and L15e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01104">
        <property type="entry name" value="RIBOSOMAL_L13E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="154" mass="17544" checksum="CC03ECA84E6FA1D6" modified="2008-05-20" version="1">MAEVPKPLVKAPAKISSGGITRWKTGRGFSLGELKAVGLNVEQARLLGLPVDERRDSTWPQNVEALRKWLVDLLEGRTQPPSISRVEVVKQKRGRAFRGLTAAGRRSRGLMTTKFRETHNYKYHKKARERRLKKRHEATKGLGNLLRISRILKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCY5</accession>
    <name>B1YCY5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 12">Adenylate kinase</fullName>
            <shortName evidence="12">AK</shortName>
            <ecNumber evidence="4 12">2.7.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11 12">ATP-AMP transphosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">adkA</name>
        <name evidence="13" type="ordered locus">Tneu_0709</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>AMP + ATP = 2 ADP</text>
            <dbReference type="Rhea" id="RHEA:12973"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 12">Belongs to the archaeal adenylate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.3" evidence="4 12"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350068.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCY5"/>
    <dbReference type="STRING" id="444157.Tneu_0709"/>
    <dbReference type="GeneID" id="6165462"/>
    <dbReference type="KEGG" id="tne:Tneu_0709"/>
    <dbReference type="eggNOG" id="arCOG01039">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119371_0_0_2"/>
    <dbReference type="OrthoDB" id="26198at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004017">
        <property type="term" value="F:AMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00234">
        <property type="entry name" value="Adenylate_kinase_AdkA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023477">
        <property type="entry name" value="Adenylate_kinase_AdkA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003122">
        <property type="entry name" value="PRK04040.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13207">
        <property type="entry name" value="AAA_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 12 13" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 12" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00019926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00033336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB39648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="198" mass="22546" checksum="6A1C1A3A16339D12" modified="2008-05-20" version="1">MKIVLVALSGSGKSTIMNLVKQKLGDVQIVNYGDVMLEIAKQKFGIQHRDEMRKKIPIAEYRKIQEEAAEYIASLPGDVIVDTHASIKIAGGYYPGLPDRVISKLKPDVILLIEYDPKDIIERRKKDPQRFRDQETEEEIEMHQQANRYYAFAAANAGESAVHILNFRGKPQSRPFEHAEMAAEYIVNLILKARQQKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD02</accession>
    <name>B1YD02_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ERCC4 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0726</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350085.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD02"/>
    <dbReference type="STRING" id="444157.Tneu_0726"/>
    <dbReference type="GeneID" id="6165347"/>
    <dbReference type="KEGG" id="tne:Tneu_0726"/>
    <dbReference type="eggNOG" id="arCOG04206">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101253_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048476">
        <property type="term" value="C:Holliday junction resolvase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048257">
        <property type="term" value="F:3'-flap endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008821">
        <property type="term" value="F:crossover junction DNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006308">
        <property type="term" value="P:DNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000727">
        <property type="term" value="P:double-strand break repair via break-induced replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd20075">
        <property type="entry name" value="XPF_nuclease_XPF_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006166">
        <property type="entry name" value="ERCC4_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033309">
        <property type="entry name" value="Mus81"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13451">
        <property type="entry name" value="CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13451:SF0">
        <property type="entry name" value="CROSSOVER JUNCTION ENDONUCLEASE MUS81"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02732">
        <property type="entry name" value="ERCC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00891">
        <property type="entry name" value="ERCC4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ERCC4" evidence="2">
        <location>
            <begin position="9"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="219" mass="24035" checksum="F3F3657F4F05C867" modified="2008-05-20" version="1">MMKFELVPTVLVDSREQAEEVVRHIKEAGCAVVKTKLEVGDYVAGVFIFERKSASDFVNSIIDGRLFDQAERLKSAGLRPVIVVEGDLWEELKSRRVSPNAVLGAQLALYKMGLGLIYTEDRAQTGALLCLAAKKEGGGKVKAPAAKKGSDVRALQIALLASLPGIGPKRAEELLKRFGTPLNALLNYRSWNIDERRHAAIKRILETPYSSGSQLDDFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="106" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD47</accession>
    <name>B1YD47_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Lysine--tRNA ligase</fullName>
            <ecNumber evidence="11">6.1.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Lysyl-tRNA synthetase</fullName>
            <shortName evidence="11">LysRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">lysS</name>
        <name evidence="13" type="ordered locus">Tneu_0771</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10 11">
            <text>tRNA(Lys) + L-lysine + ATP = L-lysyl-tRNA(Lys) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:20792"/>
            <dbReference type="Rhea" id="RHEA-COMP:9696"/>
            <dbReference type="Rhea" id="RHEA-COMP:9697"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78529"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Binds 3 Mg(2+) ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.6" evidence="11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350130.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD47"/>
    <dbReference type="STRING" id="444157.Tneu_0771"/>
    <dbReference type="GeneID" id="6164447"/>
    <dbReference type="KEGG" id="tne:Tneu_0771"/>
    <dbReference type="eggNOG" id="arCOG00408">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008255_6_0_2"/>
    <dbReference type="OrthoDB" id="131570at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004824">
        <property type="term" value="F:lysine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006430">
        <property type="term" value="P:lysyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.930.10:FF:000151">
        <property type="entry name" value="Lysine--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00252">
        <property type="entry name" value="Lys_tRNA_synth_class2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002313">
        <property type="entry name" value="Lys-tRNA-ligase_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018149">
        <property type="entry name" value="Lys-tRNA-synth_II_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001756">
        <property type="entry name" value="PRK00484.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42918:SF15">
        <property type="entry name" value="LYSINE--TRNA LIGASE, CHLOROPLASTIC_MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42918">
        <property type="entry name" value="LYSYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00982">
        <property type="entry name" value="TRNASYNTHLYS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 11" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="7 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminoacyl-transfer RNA synthetases class-II family profile" evidence="12">
        <location>
            <begin position="170"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="395"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="402"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="402"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00048573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB39710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="482" mass="55465" checksum="36D301C83E7DCDBF" modified="2008-05-20" version="1">MAERQSAEKVGEWRRLIDSLRGAGVEPYPHSFRITHSVKALNELRRQALLEPWVGLVVRTAGRVTDVRRHPNVVFIDLYEDGARFQVMADPKLPGVEGVWRGDFLGVEGAIVKTQRGDYAVKASSLILLAKAVQPLPEWGKVDRDSPFYMRYRSVAMVLDLQLRWRIAARARFIQALREAMWKRGFIEIPTPVLQPIYGGAAARPFTTKIWAIDEEWYLRISPELYLKRYIIAGFPKVFEVGPQFRNEDIDALHNPEFWSLEAYQAYADYNDMMRLTEEVVYEAVSAVLGTGVVKYRDQTINFSPPWRRITLHDALREYGGVDPDRLTDDQIREKLRELQVPVKVYNRGVALVKLFEKLVEKKLVEPTFVLDYPEESTPLCKPHREKRGLVERFEAFVGGHEVANAYTELNDPVRQYEYFVREEELFPKEEAHPLDWDFVEELSFGMPPTGGVGIGVDRLAMVITNAESIKDVIPYPIVKRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD68</accession>
    <name>B1YD68_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phospho-2-dehydro-3-deoxyheptonate aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0792</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350151.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD68"/>
    <dbReference type="STRING" id="444157.Tneu_0792"/>
    <dbReference type="GeneID" id="6164535"/>
    <dbReference type="KEGG" id="tne:Tneu_0792"/>
    <dbReference type="eggNOG" id="arCOG01049">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062599_0_0_2"/>
    <dbReference type="OrthoDB" id="350424at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016832">
        <property type="term" value="F:aldehyde-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052899">
        <property type="entry name" value="Class-I_DAHP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006218">
        <property type="entry name" value="DAHP1/KDSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006268">
        <property type="entry name" value="DAHP_syn_2"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01361">
        <property type="entry name" value="DAHP_synth_Bsub"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006421">
        <property type="entry name" value="PRK08673.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009239">
        <property type="entry name" value="PRK12595.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43018">
        <property type="entry name" value="PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43018:SF2">
        <property type="entry name" value="PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00793">
        <property type="entry name" value="DAHP_synth_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51569">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DAHP synthetase I/KDSA" evidence="2">
        <location>
            <begin position="85"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="328" mass="36051" checksum="429B8FACFC7EC891" modified="2008-05-20" version="1">MLYIVGGPQQGKSLKEEIEARGVPAWYVELWGHYIVATPPNAKLQDLKTPVKAAIELRTDGQLVSREWKRDPTPVYIGGREVREGKIFIIAGPCSVETEDQIMKTARFVKEAGADALRGGAFKPRTSPYTFQGLGEEGLKLLAKAREETGLPAVTELMDPEDMPLVVKYADAIQVGARNMQNFTLLKKLGRAGKPVLLKRGFGNTIEEWLLAAEYVALHGNGGIILVERGIRTFDKTLRFTLDVGAIAYAKQHTHLPVIGDPSHPAGDRRYVIPLALAILAAGADGLIVEVHPDPDRAWSDAKQQLTFDQFRELVQKAREVARALGKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD74</accession>
    <name>B1YD74_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Molybdopterin dehydrogenase FAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0798</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350157.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD74"/>
    <dbReference type="STRING" id="444157.Tneu_0798"/>
    <dbReference type="GeneID" id="6164548"/>
    <dbReference type="KEGG" id="tne:Tneu_0798"/>
    <dbReference type="eggNOG" id="arCOG01926">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058050_3_0_2"/>
    <dbReference type="OrthoDB" id="19205at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.50">
        <property type="entry name" value="CO dehydrogenase flavoprotein, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="entry name" value="Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005107">
        <property type="entry name" value="CO_DH_flav_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036683">
        <property type="entry name" value="CO_DH_flav_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051312">
        <property type="entry name" value="Diverse_Substr_Oxidored"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002346">
        <property type="entry name" value="Mopterin_DH_FAD-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42659">
        <property type="entry name" value="XANTHINE DEHYDROGENASE SUBUNIT C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42659:SF2">
        <property type="entry name" value="XANTHINE DEHYDROGENASE SUBUNIT C-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03450">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00941">
        <property type="entry name" value="FAD_binding_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01092">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55447">
        <property type="entry name" value="CO dehydrogenase flavoprotein C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="FAD-binding/transporter-associated domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="272" mass="29065" checksum="D03B5584002248FD" modified="2008-05-20" version="1">MYPPAFEYLRAGSLSEAVEVLSRREDSAPLAGGQSLIPLLKLRLVRYGLLVDIGGIPELRYVRYGDVVEVGALTRHFELEDSPCPFLRQVASRIGDPQVRSLGTVGGSLAHADPLGDWPAALLALGAVVKVVGPGGVREIDADGFIRGPYSTALERGELVAGVRFRCPQRGSYVKFSRRHNDFALAAAAVVAEVEEGHVVWARVAALGAGDRPVRLRKVEALLAGSPLGRDVIAAAGEAAAKEADPPSDFRASAEYRRALLSVAVRRALERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD76</accession>
    <name>B1YD76_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0800</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD76"/>
    <dbReference type="STRING" id="444157.Tneu_0800"/>
    <dbReference type="KEGG" id="tne:Tneu_0800"/>
    <dbReference type="eggNOG" id="arCOG05548">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1375586_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="195" mass="20761" checksum="C2D0FC61AA93F045" modified="2008-05-20" version="1">MALMVRRRNYRPLAAVAVLAVAALVAATVTFTNVTYWLINATKPPAMKYPGADTAVAGGQYVKVSYYYDSQRGVNITRISIIGFTGDPTNYTSVVKVCNYYGTTPITAYLVWVGQVGTTGYEGYIKAFLVKGPDGKGVGFVGTTTYTQAGPYTINPGACIDIGAYVAIDPAIPLSLANGQTILGTYQVNIQMSPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD82</accession>
    <name>B1YD82_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0806</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350165.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD82"/>
    <dbReference type="STRING" id="444157.Tneu_0806"/>
    <dbReference type="GeneID" id="6164304"/>
    <dbReference type="KEGG" id="tne:Tneu_0806"/>
    <dbReference type="eggNOG" id="arCOG07037">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022410_0_0_2"/>
    <dbReference type="OrthoDB" id="29158at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="773" mass="82439" checksum="98EE37CA66445C50" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-11-04" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD88</accession>
    <name>RL3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein uL3</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">50S ribosomal protein L3</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl3</name>
        <name type="ordered locus">Tneu_0813</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L24e.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL3 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350171.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD88"/>
    <dbReference type="SMR" id="B1YD88"/>
    <dbReference type="STRING" id="444157.Tneu_0813"/>
    <dbReference type="GeneID" id="6164539"/>
    <dbReference type="KEGG" id="tne:Tneu_0813"/>
    <dbReference type="eggNOG" id="arCOG04070">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033361_2_0_2"/>
    <dbReference type="OrthoDB" id="6121at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.960.10">
        <property type="entry name" value="Ribosomal protein L3, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01325_A">
        <property type="entry name" value="Ribosomal_uL3_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045077">
        <property type="entry name" value="L3_arc_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044892">
        <property type="entry name" value="Ribosomal_L3_dom_3_arc_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000597">
        <property type="entry name" value="Ribosomal_uL3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019928">
        <property type="entry name" value="Ribosomal_uL3_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019926">
        <property type="entry name" value="Ribosomal_uL3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03626">
        <property type="entry name" value="L3_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003261">
        <property type="entry name" value="PRK04231.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11363">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11363:SF5">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00297">
        <property type="entry name" value="Ribosomal_L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00474">
        <property type="entry name" value="RIBOSOMAL_L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_0000353628" description="Large ribosomal subunit protein uL3">
        <location>
            <begin position="1"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="230"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="3"/>
    <sequence length="338" mass="37426" checksum="CB5CCBE213A437E6" modified="2008-05-20" version="1">MGLKINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPALLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVRPVTVLDAPPLFIWGFRLYTLDPTNGYRRSIAEVWAPELPAYIRRVLTLPEKADVDKQMKKVEEFKDVAVDVRALVATQPHLSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPALMFTQPRPGQMGFHQRTEYNKRVVKIGDNGAEITPKSGFLHYGVIRGPYILIQGTVPGAKKRLVVLRHPARPPKKAPPAAEPQVVWLSSQSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDA6</accession>
    <name>B1YDA6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Alpha-isopropylmalate synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0832</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the alpha-IPM synthase/homocitrate synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350189.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDA6"/>
    <dbReference type="STRING" id="444157.Tneu_0832"/>
    <dbReference type="GeneID" id="6164566"/>
    <dbReference type="KEGG" id="tne:Tneu_0832"/>
    <dbReference type="eggNOG" id="arCOG02092">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022158_4_0_2"/>
    <dbReference type="OrthoDB" id="6555at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046912">
        <property type="term" value="F:acyltransferase activity, acyl groups converted into alkyl on transfer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019752">
        <property type="term" value="P:carboxylic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07940">
        <property type="entry name" value="DRE_TIM_IPMS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.238.260:FF:000001">
        <property type="entry name" value="2-isopropylmalate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.70:FF:000010">
        <property type="entry name" value="2-isopropylmalate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.238.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002034">
        <property type="entry name" value="AIPM/Hcit_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011830">
        <property type="entry name" value="LEU1_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054691">
        <property type="entry name" value="LeuA/HCS_post-cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02090">
        <property type="entry name" value="LEU1_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002085">
        <property type="entry name" value="PRK00915.1-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42880:SF2">
        <property type="entry name" value="(R)-CITRAMALATE SYNTHASE CIMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42880">
        <property type="entry name" value="HOMOCITRATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22617">
        <property type="entry name" value="HCS_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51569">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00815">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00816">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="7">
        <location>
            <begin position="2"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00030312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="372" mass="40760" checksum="A4EFF558D26F483E" modified="2008-05-20" version="1">MVKIFDTTLRDGEQMAGVALAPEEKLQIALALDEIGVDIIEAGFAAVSNEERTAIKNIAKETSRASIASLARLNKSDVDAAASADVDMIHVFIATSDIHLKYKLGITRDEALQKIGEVVSYAKSYGVRVLFSAEDATRSDLDFLVKAYRTAVDAGADEINVPDTVGVMTPSRMAYLIRYIRERIPPVPIHVHCHDDFGMAVANTISAIENGAEVAQVVVNGFGERAGNAALEEVVAAAHYLLGMKTNIKMEKLYELSQLVSKLFGIPVPPNKAVVGENAFSHEAGIHVHGVLNNPFTYEPMRPEDVGNRRRIVLGKHSGRHAVEWALKNIGVQPTEDLISHVLNAVKEISIKKVKIDENVLREIVADWQRRR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDC4</accession>
    <name>RS3A_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein eS1</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">30S ribosomal protein S3Ae</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Ribosomal protein S1e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps3ae</name>
        <name type="ordered locus">Tneu_0850</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eS1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350207.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDC4"/>
    <dbReference type="SMR" id="B1YDC4"/>
    <dbReference type="STRING" id="444157.Tneu_0850"/>
    <dbReference type="GeneID" id="6164467"/>
    <dbReference type="KEGG" id="tne:Tneu_0850"/>
    <dbReference type="eggNOG" id="arCOG04186">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062507_1_0_2"/>
    <dbReference type="OrthoDB" id="30639at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00359">
        <property type="entry name" value="Ribosomal_eS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001593">
        <property type="entry name" value="Ribosomal_eS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030838">
        <property type="entry name" value="Ribosomal_eS1_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003142">
        <property type="entry name" value="PRK04057.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11830">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S3A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01015">
        <property type="entry name" value="Ribosomal_S3Ae"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01397">
        <property type="entry name" value="Ribosomal_S3Ae"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000120689" description="Small ribosomal subunit protein eS1">
        <location>
            <begin position="1"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="222" mass="24560" checksum="9CCC292C34E597EC" modified="2008-05-20" version="1">MAEKQKAVAKQEKVAISKRDPWALKKWYTVYAPSYLGGVALAEVPAAEAQKLLLRTIEVSLYDITKDISHLPIKLRFQIHRVDGLKAATRFKGLELTRDYVRSLVRKGTSKVSAIVDVKTKDGWVMRISILAVTAHRIGTAQKSAIRKRVAEALSRKASDSDVGQFLKEVLEGSLAAELFVAGKKIAPLRKVEVAKIKVLRYPPEEEQTAVREVAAEEVAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDC5</accession>
    <name>B1YDC5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">KH type 1 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0851</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDC5"/>
    <dbReference type="STRING" id="444157.Tneu_0851"/>
    <dbReference type="KEGG" id="tne:Tneu_0851"/>
    <dbReference type="eggNOG" id="arCOG04150">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064992_3_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="entry name" value="K Homology domain, type 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019964">
        <property type="entry name" value="KH_domain_protein_archaea"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055211">
        <property type="entry name" value="KH_PNO1_2nd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03665">
        <property type="entry name" value="arCOG04150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF010328">
        <property type="entry name" value="PRK13763.1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12826">
        <property type="entry name" value="RIBONUCLEASE Y"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12826:SF13">
        <property type="entry name" value="RNA-BINDING PROTEIN PNO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22891">
        <property type="entry name" value="KH_PNO1_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="Eukaryotic type KH-domain (KH-domain type I)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="PNO1 second type I KH" evidence="2">
        <location>
            <begin position="100"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF22891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="186" mass="20816" checksum="CA1699CC62E62943" modified="2008-05-20" version="1">MPTNLNPLPNGDVASEYLRGEILQPVEEKRVKAAREFARLADGRWGARVEVDERGLYIKIQPGPGATVDAVLKLREMAKAVALGFTPEQALLLENDDYALAVVDLKEYTDKPNHLRRIKGRIIGEEGRARRTIENLAEVHMVVGDSYVAILGKLEDVEIAKRAVEMLIEGKKHSTVYRYIQNAKGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDF4</accession>
    <name>B1YDF4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">EamA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0880</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350237.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDF4"/>
    <dbReference type="STRING" id="444157.Tneu_0880"/>
    <dbReference type="GeneID" id="6164466"/>
    <dbReference type="KEGG" id="tne:Tneu_0880"/>
    <dbReference type="eggNOG" id="arCOG00277">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1060146_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037185">
        <property type="entry name" value="EmrE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103481">
        <property type="entry name" value="Multidrug resistance efflux transporter EmrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="155"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="211"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="129"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="259" mass="26196" checksum="75D0785746089D9E" modified="2008-05-20" version="1">MLIPAVVAALAYGLAPVVYRPALECTGRMKALSFFSLFSMAAGLLLPMGQLSAAGLLYAASAALLGGLVGSWLYITSVKTGGPSVGNVSSSLYIVLLPVSAGRLHILPAAGLALLGIAVASWGGKGHRLGAVYGVAAAFVWTASLQLYARAVELMGPGLALVVRSAVVAAAGLLLGAGESHCRIGRLAAGGFLDSFVGFGSYTMAISKGDYVAATVVVSTYPLVTSLAERPFKARRALGAAIAFAGVYMALNTSQLSSV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDH6</accession>
    <name>RL10E_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein uL16</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L10e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl10e</name>
        <name type="ordered locus">Tneu_0902</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL16 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350259.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDH6"/>
    <dbReference type="SMR" id="B1YDH6"/>
    <dbReference type="STRING" id="444157.Tneu_0902"/>
    <dbReference type="GeneID" id="6164568"/>
    <dbReference type="KEGG" id="tne:Tneu_0902"/>
    <dbReference type="eggNOG" id="arCOG04113">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084051_0_2_2"/>
    <dbReference type="OrthoDB" id="30538at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01433">
        <property type="entry name" value="Ribosomal_L16_L10e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.1170.10:FF:000008">
        <property type="entry name" value="50S ribosomal protein L10e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.10">
        <property type="entry name" value="Ribosomal protein L10e/L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00448">
        <property type="entry name" value="Ribosomal_uL16_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047873">
        <property type="entry name" value="Ribosomal_uL16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022981">
        <property type="entry name" value="Ribosomal_uL16_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018255">
        <property type="entry name" value="Ribosomal_uL16_CS_euk_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016180">
        <property type="entry name" value="Ribosomal_uL16_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001197">
        <property type="entry name" value="Ribosomal_uL16_euk_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036920">
        <property type="entry name" value="Ribosomal_uL16_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003236">
        <property type="entry name" value="PRK04199.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003239">
        <property type="entry name" value="PRK04199.1-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11726">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00252">
        <property type="entry name" value="Ribosomal_L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005590">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54686">
        <property type="entry name" value="Ribosomal protein L16p/L10e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01257">
        <property type="entry name" value="RIBOSOMAL_L10E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000193769" description="Large ribosomal subunit protein uL16">
        <location>
            <begin position="1"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="182" mass="20181" checksum="69CA64A376E20D2B" modified="2008-05-20" version="1">MPVRPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEAGQVIFYAEFKPEHVAHMKEALRRASTKLPLPTRIVIEAKGDGGGKAATQG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDJ1</accession>
    <name>RTCA_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA 3'-terminal phosphate cyclase</fullName>
            <shortName evidence="1">RNA cyclase</shortName>
            <shortName evidence="1">RNA-3'-phosphate cyclase</shortName>
            <ecNumber evidence="1">6.5.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rtcA</name>
        <name type="ordered locus">Tneu_0917</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 3'-end 3'-phospho-ribonucleotide-RNA + ATP = a 3'-end 2',3'-cyclophospho-ribonucleotide-RNA + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23976"/>
            <dbReference type="Rhea" id="RHEA-COMP:10463"/>
            <dbReference type="Rhea" id="RHEA-COMP:10464"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:83062"/>
            <dbReference type="ChEBI" id="CHEBI:83064"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.5.1.4"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RNA 3'-terminal cyclase family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.5.1.4" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350274.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDJ1"/>
    <dbReference type="SMR" id="B1YDJ1"/>
    <dbReference type="STRING" id="444157.Tneu_0917"/>
    <dbReference type="GeneID" id="6164583"/>
    <dbReference type="KEGG" id="tne:Tneu_0917"/>
    <dbReference type="eggNOG" id="arCOG04125">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027882_0_0_2"/>
    <dbReference type="OrthoDB" id="7994at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003963">
        <property type="term" value="F:RNA-3'-phosphate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00874">
        <property type="entry name" value="RNA_Cyclase_Class_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.360.20:FF:000002">
        <property type="entry name" value="RNA terminal phosphate cyclase-like 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.20">
        <property type="entry name" value="RNA 3'-terminal phosphate cyclase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.20">
        <property type="entry name" value="RNA 3'-terminal phosphate cyclase, insert domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00200">
        <property type="entry name" value="RTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013791">
        <property type="entry name" value="RNA3'-term_phos_cycl_insert"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023797">
        <property type="entry name" value="RNA3'_phos_cyclase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037136">
        <property type="entry name" value="RNA3'_phos_cyclase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000228">
        <property type="entry name" value="RNA3'_term_phos_cyc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017770">
        <property type="entry name" value="RNA3'_term_phos_cyc_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036553">
        <property type="entry name" value="RPTC_insert"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03399">
        <property type="entry name" value="RNA_3prim_cycl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11096">
        <property type="entry name" value="RNA 3' TERMINAL PHOSPHATE CYCLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11096:SF0">
        <property type="entry name" value="RNA 3'-TERMINAL PHOSPHATE CYCLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01137">
        <property type="entry name" value="RTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05189">
        <property type="entry name" value="RTC_insert"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005378">
        <property type="entry name" value="RNA3'_term_phos_cycl_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="EPT/RTPC-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52913">
        <property type="entry name" value="RNA 3'-terminal phosphate cyclase, RPTC, insert domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000099356" description="RNA 3'-terminal phosphate cyclase">
        <location>
            <begin position="1"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-AMP-histidine intermediate" evidence="1">
        <location>
            <position position="312"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="286"/>
            <end position="289"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00200"/>
        </source>
    </evidence>
    <sequence length="347" mass="36649" checksum="709FB0EB3424C673" modified="2008-05-20" version="1">MAVRIDGSYGEGGGQILRTSIALSALLGKPVEIVNIRAKRANPGLQPQHLTGVSAAALLTDAEVEGAAKGSTRLFFKPKALKCGTFNIDIGTAGSISLVVQTLAPILLYAPCPTKLVITGGTDVAWAPPIDYMRFVFARYLTRFGARIAIELVKRGHYPRGGGKAVVQAEPAGRLRAVDSVEFGRPAKIAGVSHAVNLPPHVAERQARAAREALAKLGYAAEVEVEARNDGLGPGSGVVLWAESDVGNVVGGDALGERGKPAEEVGREAAEKLAAVLKAGASLDPHMADMVVLYMALAQGRSRLSTTEATMHLQTNIYIVEQFLPVKFKLERAGPRYIIEVEGVGYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDK0</accession>
    <name>B1YDK0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF1152 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0926</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350283.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDK0"/>
    <dbReference type="STRING" id="444157.Tneu_0926"/>
    <dbReference type="GeneID" id="6164489"/>
    <dbReference type="KEGG" id="tne:Tneu_0926"/>
    <dbReference type="eggNOG" id="arCOG04164">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069296_0_0_2"/>
    <dbReference type="OrthoDB" id="275458at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010581">
        <property type="entry name" value="DUF1152"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06626">
        <property type="entry name" value="DUF1152"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="312" mass="32923" checksum="F0658FC279EE2CC3" modified="2008-05-20" version="1">MTLYLAIGGGGDVVMAAALAGDNPVGQIPWERYVVDPTPGPVPPEALRGVEELGGGLYLATAGSYVERGGRRFKTQGMCAAEVLGKPIYIVDPYRRPSELAKALARFGGVVGVDVGGDVLGIGCEESLGSPLADAYGLAVLAKLAEGGAYAELLVMSPGADGELDRRYIMERAAEVAKMGGLLGVTGISRGQAEVLAGLVERCVTEASAVALKALRGEHGPAPLRGGLRRVEVDICAAVGLRLEPRVLLKLNKAAWTIYERDLPIDKAADVLLEEGIPTELHLERLLAAGYDPRRAVEELRRRKRCLPAARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDK3</accession>
    <name>B1YDK3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Zinc ribbon domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0929</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350286.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDK3"/>
    <dbReference type="STRING" id="444157.Tneu_0929"/>
    <dbReference type="GeneID" id="6164378"/>
    <dbReference type="KEGG" id="tne:Tneu_0929"/>
    <dbReference type="eggNOG" id="arCOG03777">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070502_0_0_2"/>
    <dbReference type="OrthoDB" id="88835at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="278"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="304"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="332" mass="35742" checksum="33E21211EF6E5BBD" modified="2008-05-20" version="1">MRCSYCGAPLDVTPDSVVVVCRYCGRANFLAGEPRDVLAVPTLPASEVVKRAVERTRRDLSLRWRISEINFASPDLYYLPFYLVDARLSAVYQATVVVTYTKTVYVRGQPRAETVTRVVRVGGRVALADVVAVLARRAAWGLSIDRLTSHFFKTGPEPRPLAEVASGGQASAFMAGEFTAERAKAKAVRALIPRLLAAVDRDAEERARAAVGVFTAAARVRDKTVDYEVERLAASPLTYLPLWVMPYFYRGSSFRYYIAGWDGEVVLAEEPVFAEHKAASLLAAAAAGGLAGGLGYAALGVDPYVGAAVVAAGGALSYMAAGGLLRSRRVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDK6</accession>
    <name>B1YDK6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0932</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350289.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDK6"/>
    <dbReference type="STRING" id="444157.Tneu_0932"/>
    <dbReference type="GeneID" id="6164600"/>
    <dbReference type="KEGG" id="tne:Tneu_0932"/>
    <dbReference type="eggNOG" id="arCOG05623">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080643_0_0_2"/>
    <dbReference type="OrthoDB" id="29090at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052258">
        <property type="entry name" value="Diverse_Func_Domain-Protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37612">
        <property type="entry name" value="FIBROIN HEAVY CHAIN FIB-H LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37612:SF20">
        <property type="entry name" value="PER-HEXAMER REPEAT PROTEIN 5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="280"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="192"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="2">
        <location>
            <begin position="282"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="351" mass="36886" checksum="2459F7ED7AB6D936" modified="2008-05-20" version="1">MERKVIPVIALAALAALAQAASVNATADFHLWLKCKAIELYINTTGANFTLPQCDALLAQLNKTYVVTAPTAQPLPMIGVGELKMLNVSDPKAVFQQIREIRLAAIKELGKHLNRTVDRVYANINASADIENATEGGLRALMRVRALLGRVNASRAAVEAVDRNIERLRLLREVYMYGNATAYVAGRVNLTDRGLEEAIDHLERVLARARELQEHFEKLKLAQLAQVVALRAHLINETISLLTVLKTLPPEMRGDAVRAIAAHKWSERYKVIDDIMSRAKGAAGGGASGEGRGSGAGGGGGQVSWSGGMGGQGSGGGSGQGSWSGSGGWSGGQGSGGGSGSGQGSGGWKGR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDP2</accession>
    <name>FAU1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Probable ribonuclease FAU-1</fullName>
            <ecNumber evidence="1">3.1.26.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">RNA-binding protein FAU-1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">fau-1</name>
        <name type="ordered locus">Tneu_0970</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Probable RNase involved in rRNA stability through maturation and/or degradation of precursor rRNAs. Binds to RNA in loop regions with AU-rich sequences.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the FAU-1 family.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.-" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350325.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDP2"/>
    <dbReference type="SMR" id="B1YDP2"/>
    <dbReference type="STRING" id="444157.Tneu_0970"/>
    <dbReference type="GeneID" id="6164632"/>
    <dbReference type="KEGG" id="tne:Tneu_0970"/>
    <dbReference type="eggNOG" id="arCOG04307">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044303_0_0_2"/>
    <dbReference type="OrthoDB" id="84798at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035925">
        <property type="term" value="F:mRNA 3'-UTR AU-rich region binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016891">
        <property type="term" value="F:RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.380.10">
        <property type="entry name" value="FomD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01910">
        <property type="entry name" value="RNA_binding_AU_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007295">
        <property type="entry name" value="DUF402"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035930">
        <property type="entry name" value="FomD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050212">
        <property type="entry name" value="Ntdp-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016730">
        <property type="entry name" value="RNA-bd_FAU-1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39159">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39159:SF1">
        <property type="entry name" value="UPF0374 PROTEIN YGAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04167">
        <property type="entry name" value="DUF402"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159234">
        <property type="entry name" value="FomD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0255">Endonuclease</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0540">Nuclease</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0698">rRNA processing</keyword>
    <feature type="chain" id="PRO_1000188788" description="Probable ribonuclease FAU-1">
        <location>
            <begin position="1"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="424"/>
            <end position="447"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="447" mass="48682" checksum="AA0E7CDA27C25B80" modified="2008-05-20" version="1">MFRARIRGIYATALTKLALDWGFKVVQPTPQIAERFGLRPDPSPPDVTVKDHESKTGVVAIGDCPAVDHLLERLREYADPVVAKASAGLHDVFVGRVVGEGLVEGPGGLMEVPGRYVLQPGAASVFTVVKPPVGPLRGVAVPEIVVDGKLLELNTTGRVAYSRHIGEEERLRLRILAETRLKAYASIGLRFKSSAKYAGEEELAREAEELYRELLRLSQGGPPGALLRRGRCLAVVLFDKRAKFKLDEARAAVVPTVRGHHALRGQGLGRCLDLLDHVGADVYERAAAFLARGRVAIYHVKPWGEVVKMRGEVVKALEDVLVVKRTLKPGGVLDGIGARIEPGTYALTCVPRSGGYVVHSYYSASGVYLGTYVNANTEPEWGRRVVYIDLLVDKAYGPDGVERVLDEEELQRYAHMLPERLRRPEAPGGKICTPEGLTSAPPRSSSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDP7</accession>
    <name>B1YDP7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Egghead-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0975</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350330.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDP7"/>
    <dbReference type="STRING" id="444157.Tneu_0975"/>
    <dbReference type="GeneID" id="6164289"/>
    <dbReference type="KEGG" id="tne:Tneu_0975"/>
    <dbReference type="eggNOG" id="arCOG03664">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_759923_0_0_2"/>
    <dbReference type="OrthoDB" id="55818at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019187">
        <property type="term" value="F:beta-1,4-mannosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027389">
        <property type="entry name" value="B_mannosylTrfase_Bre-3/Egh"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16779">
        <property type="entry name" value="BETA-1,4-MANNOSYLTRANSFERASE EGH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16779:SF1">
        <property type="entry name" value="BETA-1,4-MANNOSYLTRANSFERASE EGH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13632">
        <property type="entry name" value="Glyco_trans_2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="267"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="309"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="2">
        <location>
            <begin position="112"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="341" mass="38504" checksum="FFA340C41660AD2A" modified="2008-05-20" version="1">MFELTYIVLNAVGGIYLFILALGAARRPGGRRAEPVDNYLVVVVTVGDGRVLPALRETVAQLERLGLRYVVVSSKPVGVRNVLVVPREEDGTKYRAIRWFVLNYARPDTWYIFLDDDSYPLDREFLRDIAYYGARGYVAGNGVIVPRPGRSRLAYALDWVRHFDDLTRYRFALEVLRRPIFGMHGELLIVRGDVLREIWPAMGDTVTEDFRFAMELLRRRYKTFQTRTRVSIKSPNSLLDFARQRARWASALGEAVRYRNPIPPASAAVAALLAAAGPLTALYGPTLATAVAALYAAVYIYGSLRARRYIVDVLLASTLELLAMAAGVIHRQRRFYVIDKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDS5</accession>
    <name>B1YDS5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1006</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350358.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDS5"/>
    <dbReference type="STRING" id="444157.Tneu_1006"/>
    <dbReference type="GeneID" id="6164939"/>
    <dbReference type="KEGG" id="tne:Tneu_1006"/>
    <dbReference type="eggNOG" id="arCOG01310">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050811_0_0_2"/>
    <dbReference type="OrthoDB" id="18576at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.340">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="403"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="333"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="425" mass="44956" checksum="DB91992342D3734F" modified="2008-05-20" version="1">MNPKVAAFLLAAALAAAQQLYVPVLVDVSHGEATKGLDLWVNSTANPLAITDFARLYVLVPPDAKLDPTLTKLNATKAAVIIRGDLSTVDLSQFKVIVLGQPPKPLSEAELAALKKWFDSGGRVLWCAADSDYPAQGSEESQAACNDVAEYLGAHIRADYVSVEDPQQNAGAAYRVVGVVDPPPQLAFLGFLAQRVLLHGPGAIAVVLPDGRWVPATSPEAQKAYGNIYVIVRTTEKGAIVEHRTSADGKGRDGKAHKAGDRGVFALMAAEIMPSGSVLILSGETPYGGYEPMVAPVYYRVQLDGPRFLRNILLWATGNYRELTTMVYQARQMAQIASDAAALKNTAASLQNEVSAVKTAVSQVSAKVDAVGGQVAELSQKVDQLTQQLNAAVAEANNAKTTAFVGTALALIFAIAAAALAIRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDX4</accession>
    <name>B1YDX4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Formate dehydrogenase</fullName>
            <ecNumber evidence="11">1.2.1.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1056</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell envelope</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.2" evidence="11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350406.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDX4"/>
    <dbReference type="STRING" id="444157.Tneu_1056"/>
    <dbReference type="GeneID" id="6165132"/>
    <dbReference type="KEGG" id="tne:Tneu_1056"/>
    <dbReference type="eggNOG" id="arCOG01491">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="eggNOG" id="arCOG01493">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_274368_0_0_2"/>
    <dbReference type="OrthoDB" id="23466at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.740">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.228.10">
        <property type="entry name" value="Dimethylsulfoxide Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006655">
        <property type="entry name" value="Mopterin_OxRdtase_prok_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43598:SF5">
        <property type="entry name" value="DMSO REDUCTASE CHAIN A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43598">
        <property type="entry name" value="TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE 2 SUBUNIT B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="ADC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53706">
        <property type="entry name" value="Formate dehydrogenase/DMSO reductase, domains 1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00490">
        <property type="entry name" value="MOLYBDOPTERIN_PROK_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="10">
        <location>
            <begin position="52"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="1168" mass="130133" checksum="AA3EFC715ED1C676" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDZ7</accession>
    <name>B1YDZ7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC-2 type transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1079</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350429.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDZ7"/>
    <dbReference type="STRING" id="444157.Tneu_1079"/>
    <dbReference type="GeneID" id="6165862"/>
    <dbReference type="KEGG" id="tne:Tneu_1079"/>
    <dbReference type="eggNOG" id="arCOG01469">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096331_0_0_2"/>
    <dbReference type="OrthoDB" id="97972at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051784">
        <property type="entry name" value="Nod_factor_ABC_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43229:SF3">
        <property type="entry name" value="ABC-TYPE MULTIDRUG TRANSPORT SYSTEM, PERMEASE COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43229">
        <property type="entry name" value="NODULATION PROTEIN J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="164"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="211"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="239" mass="24947" checksum="8F45399BA2D96166" modified="2008-05-20" version="1">MKAIRDALVIAWVNGWIAAVRGWVWVLANAATPLSFLAILGVYGGVDGLRWGLAGGLVWTVASNGISLIGDAAYYRLAIRYQSMLVAAPVSPAGYALGLALSSFVFSLPSLAVYAAAALWLGVNLLAPQAAYAFVMLWLASAGVGFTLSSLVKHMRYAWSLPQILSTVFTVAAPVYYSATLLPSPYLGLLLPTGAAAVIIQEAAGLANYGLGAPAAAALAAQSALGLYSLFKLARWREP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE04</accession>
    <name>B1YE04_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1086</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350436.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE04"/>
    <dbReference type="STRING" id="444157.Tneu_1086"/>
    <dbReference type="GeneID" id="6165707"/>
    <dbReference type="KEGG" id="tne:Tneu_1086"/>
    <dbReference type="eggNOG" id="arCOG03765">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1412437_0_0_2"/>
    <dbReference type="OrthoDB" id="24875at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="191" mass="20755" checksum="13125C09C3A476D6" modified="2008-05-20" version="1">MEKRDRVNIAVAKAVAELLAKTAEELGMTQYALANQILSVGLELVRMGYSPSQIREVALFYKIMTELESLPVPGRLMDRMIVEVASVDAEAVYRAWCDAGKMLAAYIKAVFGDLEKAVELAPYLAKVIPAKRFDVKAQGGNFQLDAVGVGYSIESVQATARAVQCLLEEVGYEVKEVVTAPGVLRVSAAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE48</accession>
    <name>B1YE48_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ATPase AAA-type core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1131</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350480.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE48"/>
    <dbReference type="STRING" id="444157.Tneu_1131"/>
    <dbReference type="GeneID" id="6165536"/>
    <dbReference type="KEGG" id="tne:Tneu_1131"/>
    <dbReference type="eggNOG" id="arCOG06984">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1048159_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="285" mass="31680" checksum="E2B9C6C067B11E7E" modified="2008-05-20" version="1">MFKFEFCPTRSRCLTRGRGEMADVTVIMGPPRAGKSLFLALLYGLSYYSRQGRIPGFLRELAESYLGAEGHIALETEDGVVRCESTADGVSCAADARGQFMAYLLYEGLEYTLRYRHCAPPDERGEVLAYIEKAVMKKVGERYPVVVRGGELWEEVDGKHLPIRHSSNAVVLIGVLERLAGYASEGEMLLLDGTLDGLYPDDAAYIAYRIAQAASRGARAVVATHLPLIYDLFNNLDAVAEYLGKEKLRVETAGWIFHAGEIAPADYNLTPYGRVLMEIYSKIYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8K1</accession>
    <name>B1Y8K1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">CRISPR system Cms protein Csm4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1150</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CRISPR-associated Csm4 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8K1"/>
    <dbReference type="STRING" id="444157.Tneu_1150"/>
    <dbReference type="KEGG" id="tne:Tneu_1150"/>
    <dbReference type="eggNOG" id="arCOG03223">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1010544_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005510">
        <property type="entry name" value="Csm4"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01903">
        <property type="entry name" value="cas5_csm4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="275" mass="30056" checksum="89EDD5FAD1504A23" modified="2008-05-20" version="1">MVAMRVGYAVLRFVTPIHVGRWTLYDSWDYVPSDAIYSALYALGVRGGFRVSSAYPMVADASDRLHLPAPLPATWRLQLLRGAAPEEAKAVKRLRYIPLECLKGGDVPKRRGDRWTCGGLELKDRPYGERLAVARNALSRVNQMAEPYRIAVFNPLVPYVVYYQGLDVSYLKLLGEVGVGGKRSSGLGKFEVVEVGEVDVGDSGSAALLMGVGRPVGYERALGEWAVRSWSCTWGAVGPASVLMDGGVVWGSFDFEDLGGGGCVKILRPLWLWIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8L6</accession>
    <name>B1Y8L6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1166</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350514.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8L6"/>
    <dbReference type="STRING" id="444157.Tneu_1166"/>
    <dbReference type="GeneID" id="6164738"/>
    <dbReference type="KEGG" id="tne:Tneu_1166"/>
    <dbReference type="eggNOG" id="arCOG01156">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025443_3_2_2"/>
    <dbReference type="OrthoDB" id="134976at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051158">
        <property type="entry name" value="Metallophosphoesterase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31302:SF28">
        <property type="entry name" value="METALLOPHOSPHOESTERASE, CALCINEURIN SUPERFAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31302">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Calcineurin-like phosphoesterase" evidence="1">
        <location>
            <begin position="37"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="230" mass="25238" checksum="BF22CA91C30F9BF7" modified="2008-05-20" version="1">MRRRQLFTAAGALLLAGGLAGGFHTELTTLELGLGRRVAFLSDLHIHAQRRLELPPYDILLIGGDTYDELTPDLAAVAETLRRLPGPKIAVLGNHERWASRWIPLRRGVAALEEAGVHVLADDWVQIGGLRIYGLDWRDDPRDYPPVKDADVVLVHSPDAFHTAAGGLYLAGHTHGGHICLPGNVPLYTNSRFGYTWGLYRRGGALMYVTRGAGEMTPRAFCSREAVMVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8N0</accession>
    <name>B1Y8N0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">tryptophan synthase</fullName>
            <ecNumber evidence="4">4.2.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1180</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9 12">
            <text>(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + L-tryptophan + H2O</text>
            <dbReference type="Rhea" id="RHEA:10532"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.2.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Tetramer of two alpha and two beta chains.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.20" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350528.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8N0"/>
    <dbReference type="STRING" id="444157.Tneu_1180"/>
    <dbReference type="GeneID" id="6165148"/>
    <dbReference type="KEGG" id="tne:Tneu_1180"/>
    <dbReference type="eggNOG" id="arCOG01086">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016734_0_2_2"/>
    <dbReference type="OrthoDB" id="25658at2157"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd04724">
        <property type="entry name" value="Tryptophan_synthase_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002028">
        <property type="entry name" value="Trp_synthase_suA"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009621">
        <property type="entry name" value="PRK13125.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43406:SF1">
        <property type="entry name" value="TRYPTOPHAN SYNTHASE ALPHA CHAIN, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43406">
        <property type="entry name" value="TRYPTOPHAN SYNTHASE, ALPHA CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00290">
        <property type="entry name" value="Trp_syntA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="Ribulose-phoshate binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0456">Lyase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0822">Tryptophan biosynthesis</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00049047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="235" mass="25921" checksum="AFC86CF207FCD73E" modified="2008-05-20" version="1">MRRPGLGVYILAGWPNAEVFKRALTAVGEVADFVELGLPSRNPKYDGPYIRRAHREAEPSAVEAAPGETYVMAYWEDFAGEPQRLFDAARAAGARGVLAPDLLIDFPGDLDRYVELTRRYGLEPAFFIPSKFPYALLRRLASLKPAFIYLGLYAATGIELPVYVERNIKTVREVAPDVYLVAGFAIDSPRKAAAVVEAGADAVVVGTAFLRRLRNSVEEAIAFLKEIRGALYLQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8N4</accession>
    <name>B1Y8N4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">TsaA-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1184</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the tRNA methyltransferase O family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350532.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8N4"/>
    <dbReference type="STRING" id="444157.Tneu_1184"/>
    <dbReference type="GeneID" id="6165258"/>
    <dbReference type="KEGG" id="tne:Tneu_1184"/>
    <dbReference type="eggNOG" id="arCOG00761">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013458_2_0_2"/>
    <dbReference type="OrthoDB" id="40408at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd09281">
        <property type="entry name" value="UPF0066"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.70">
        <property type="entry name" value="YaeB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023370">
        <property type="entry name" value="TrmO-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040372">
        <property type="entry name" value="YaeB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036413">
        <property type="entry name" value="YaeB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036414">
        <property type="entry name" value="YaeB_N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00104">
        <property type="entry name" value="tRNA_TsaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12818">
        <property type="entry name" value="TRNA (ADENINE(37)-N6)-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12818:SF0">
        <property type="entry name" value="TRNA (ADENINE(37)-N6)-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01980">
        <property type="entry name" value="TrmO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118196">
        <property type="entry name" value="YaeB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51668">
        <property type="entry name" value="TSAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="TsaA-like" evidence="3">
        <location>
            <begin position="4"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00033753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="139" mass="15432" checksum="D3598D1AFB087B30" modified="2008-05-20" version="1">MYSVVPIGHVRHGYSDDEVKRRGAVDAVIEVLPEFEAGLAGVEEYSHIIMVAYLHKFRGRPLVVRPKRVQGAPEVGVFATDSPDRPNPIAVTVARLVRREGRLLYVEGVDLFDGTPVLDIKGFSPKRCPEGARAPWWAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8P1</accession>
    <name>B1Y8P1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ornithine cyclodeaminase/mu-crystallin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1192</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350539.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8P1"/>
    <dbReference type="STRING" id="444157.Tneu_1192"/>
    <dbReference type="GeneID" id="6166298"/>
    <dbReference type="KEGG" id="tne:Tneu_1192"/>
    <dbReference type="eggNOG" id="arCOG01035">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042088_2_1_2"/>
    <dbReference type="OrthoDB" id="21421at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1780.10">
        <property type="entry name" value="ornithine cyclodeaminase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003462">
        <property type="entry name" value="ODC_Mu_crystall"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023401">
        <property type="entry name" value="ODC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13812">
        <property type="entry name" value="KETIMINE REDUCTASE MU-CRYSTALLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13812:SF19">
        <property type="entry name" value="KETIMINE REDUCTASE MU-CRYSTALLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02423">
        <property type="entry name" value="OCD_Mu_crystall"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001439">
        <property type="entry name" value="CryM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="289" mass="31082" checksum="A585EC50C03FC54A" modified="2008-05-20" version="1">MLVLPNIDFLVDPAEAVEAIRRAYFAEAKFLPRQALTVGETWFAPMVGHIAGQGITVKLVGIYPKARPTVKAVVMVFDPETGTPQALINGTQLTAWRTAAASAVAAQALGARPAEVGVVGAGVQGEYHIRVFKALYPHARFKIYDVSEERAREVAAKWGGEAASLPAALRSDLVIAATTSKTPVVAGRELREGAAVISIGAPRPVRELDDEVKRRAGCMLVDNPHAAEETDDVGGSWVYIGDFLRGRECRFGEIKVYKSVGNPLFDAAMANYLLEKAKRAGAGVEVRWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8P3</accession>
    <name>B1Y8P3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Abortive infection protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1194</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350541.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8P3"/>
    <dbReference type="STRING" id="444157.Tneu_1194"/>
    <dbReference type="GeneID" id="6166271"/>
    <dbReference type="KEGG" id="tne:Tneu_1194"/>
    <dbReference type="eggNOG" id="arCOG03736">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_138958_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004175">
        <property type="term" value="F:endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080120">
        <property type="term" value="P:CAAX-box protein maturation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003675">
        <property type="entry name" value="Rce1/LyrA-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02517">
        <property type="entry name" value="Rce1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="CAAX prenyl protease 2/Lysostaphin resistance protein A-like" evidence="2">
        <location>
            <begin position="78"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="167" mass="17371" checksum="6524299F79B79823" modified="2008-05-20" version="1">MAYKADLGVAGAAALAAMLTALALVPRPYGELAVLAAAPLLRRRVAWVRFSPTHIAASLAVYAAAFALDYVTVGPPAYVPTWWDAAVLTPFAEELVFRAAAFALLPPPASWIFAVAVFGALHPANPLLASLYGLALALMYRGGGYAASAGLHAVNNLVWLTLAAGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8P5</accession>
    <name>B1Y8P5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Phosphate-starvation-inducible E-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1196</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350543.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8P5"/>
    <dbReference type="STRING" id="444157.Tneu_1196"/>
    <dbReference type="GeneID" id="6165076"/>
    <dbReference type="KEGG" id="tne:Tneu_1196"/>
    <dbReference type="eggNOG" id="arCOG05622">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1902054_0_0_2"/>
    <dbReference type="OrthoDB" id="28525at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020948">
        <property type="entry name" value="P_starv_induced_PsiE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06146">
        <property type="entry name" value="PsiE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="52"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="83"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="116"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="9">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="139" mass="15800" checksum="14DACA2A0BDF9C0D" modified="2008-05-20" version="1">MDLVRGLRQGEYLVYFMILILTAVLLAVSLYLSVLRIYELFALSYSTDKLAQAIYIALSDIFLAVVFVELIDTFVTYIERKKIVVYKIIDVALVALARELFVYLAPVNKEFQIEKAAAIVAATLVVGIIDFLQRKTSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Q2</accession>
    <name>B1Y8Q2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1203</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350550.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Q2"/>
    <dbReference type="STRING" id="444157.Tneu_1203"/>
    <dbReference type="GeneID" id="6165085"/>
    <dbReference type="KEGG" id="tne:Tneu_1203"/>
    <dbReference type="eggNOG" id="arCOG05620">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1202658_0_0_2"/>
    <dbReference type="OrthoDB" id="28068at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="230" mass="24854" checksum="97727989F12F8E86" modified="2008-05-20" version="1">MPLAYVGGPPVAVFAGSWLCSKSPIDGTPIALGEPFGDCDPSVARLMSIATSVRLAKQAGARVFVSRELGEDGVDAAFAGGADGVLEELDYEVGRYREGAKFVLFEGRDVAEVVNAVRRTAEEARRPFDVLVAVDLGQVGVFAPYVDGVVLRGGWVEVEVGATEVLPEVGRCVHCGVDYLMYSGALRRCLYCGRRLARVVTSVRPPRSRAVFRSIYRKYASLPKIRLKIV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-09-02" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Q5</accession>
    <name>RL30_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein uL30</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L30</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl30</name>
        <name type="ordered locus">Tneu_1207</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL30 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350553.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Q5"/>
    <dbReference type="SMR" id="B1Y8Q5"/>
    <dbReference type="STRING" id="444157.Tneu_1207"/>
    <dbReference type="GeneID" id="6165337"/>
    <dbReference type="KEGG" id="tne:Tneu_1207"/>
    <dbReference type="eggNOG" id="arCOG04086">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055156_6_0_2"/>
    <dbReference type="OrthoDB" id="6379at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000463">
        <property type="term" value="P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01657">
        <property type="entry name" value="Ribosomal_L7_archeal_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.15.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.20">
        <property type="entry name" value="Ribosomal protein L30, ferredoxin-like fold domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01371_A">
        <property type="entry name" value="Ribosomal_uL30_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036919">
        <property type="entry name" value="Ribo_uL30_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039699">
        <property type="entry name" value="Ribosomal_uL30"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005997">
        <property type="entry name" value="Ribosomal_uL30_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035808">
        <property type="entry name" value="Ribosomal_uL30_euk_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016082">
        <property type="entry name" value="Ribosomal_uL30_ferredoxin-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004711">
        <property type="entry name" value="PRK06049.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11524">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11524:SF16">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00327">
        <property type="entry name" value="Ribosomal_L30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55129">
        <property type="entry name" value="Ribosomal protein L30p/L7e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_0000347175" description="Large ribosomal subunit protein uL30">
        <location>
            <begin position="1"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="175" mass="19867" checksum="2D94720C47E1B65D" modified="2008-05-20" version="1">MIAKVVYPRYAVIRLRGIPTTPRDIAATLDLLRLRRKFTMTVVVGSPDVLGMIEKANDWITWGEIDANTLAEVLKRRGRLVGDRPLTLEHLQRWGWRSFEEVALAFVAGEIDRLSCGRKVPAREGQRAPCIPYLKPFFRLHPPRGGLNSLKLHFSVGGDLGYRGPLINDLIRRML</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8S7</accession>
    <name>B1Y8S7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Signal-transduction protein with CBS domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1229</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350575.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8S7"/>
    <dbReference type="STRING" id="444157.Tneu_1229"/>
    <dbReference type="GeneID" id="6166235"/>
    <dbReference type="KEGG" id="tne:Tneu_1229"/>
    <dbReference type="eggNOG" id="arCOG00631">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040681_12_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd09836">
        <property type="entry name" value="CBS_pair_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="entry name" value="CBS-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051257">
        <property type="entry name" value="Diverse_CBS-Domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080:SF2">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="CBS-domain pair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="7"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="73"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="136" mass="15026" checksum="B23C2A4DF7A8B2E4" modified="2008-05-20" version="1">MLARDFAKRPVVTSTPDASIREVASIMSSRRIGLVVIVDRRNPELVVGVVSERDIIRAVAQGLDLGRPVEEVMSAPAIAVEAEEPVWRVAEIMQRHGIRHVVVTRGGRLYGVISIRDLLAERAALKTLAEHAREIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8T4</accession>
    <name>B1Y8T4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1236</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350582.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8T4"/>
    <dbReference type="STRING" id="444157.Tneu_1236"/>
    <dbReference type="GeneID" id="6166095"/>
    <dbReference type="KEGG" id="tne:Tneu_1236"/>
    <dbReference type="eggNOG" id="arCOG01270">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_1_0_2"/>
    <dbReference type="OrthoDB" id="43815at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06582">
        <property type="entry name" value="TM_PBP1_LivH_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052157">
        <property type="entry name" value="BCAA_transport_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11795:SF442">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11795">
        <property type="entry name" value="BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE PROTEIN LIVH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="33"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="57"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="91"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="128"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="178"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="255"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00037998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="280" mass="29454" checksum="9CA3AF7A19A0CEF6" modified="2008-05-20" version="1">MIEFFLAVLTFWTHLVLLSVGLQFIYSSAKTLNLSHGSFFVLGGYVASWAFAALGNFGIAVFAAVGVAALAGAAFYIGVSRLARDETSQLFFTFSLFWIFEGIYRTVFGVGIYNAYAFAESLGRAAGIPWAYILGATAAAAALTAVYLLLYKTPWGLYLRAAGDNPLMAEALGVKSGLVHGTGVVLGVALAALGGAVSSMWQSFTPGLAGVALVYAFAVVAMAGLGNVMGALVASLIISLIRTASVFYAPELELFSIYIAVLAVLAVKPSGLFTRHERRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8V1</accession>
    <name>B1Y8V1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Thioesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1253</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8V1"/>
    <dbReference type="STRING" id="444157.Tneu_1253"/>
    <dbReference type="KEGG" id="tne:Tneu_1253"/>
    <dbReference type="eggNOG" id="arCOG00773">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073524_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052816">
        <property type="term" value="F:long-chain fatty acyl-CoA hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006637">
        <property type="term" value="P:acyl-CoA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03442">
        <property type="entry name" value="BFIT_BACH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.129.10">
        <property type="entry name" value="Hotdog Thioesterase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040170">
        <property type="entry name" value="Cytosol_ACT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033120">
        <property type="entry name" value="HOTDOG_ACOT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11049">
        <property type="entry name" value="ACYL COENZYME A THIOESTER HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11049:SF16">
        <property type="entry name" value="PROTEIN VDLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="Thioesterase/thiol ester dehydrase-isomerase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51770">
        <property type="entry name" value="HOTDOG_ACOT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HotDog ACOT-type" evidence="2">
        <location>
            <begin position="20"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="HotDog ACOT-type" evidence="2">
        <location>
            <begin position="171"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="334" mass="36755" checksum="43DBBF068769C744" modified="2008-05-20" version="1">MGRRDDIKTSLVSPVDVVVSSTLVESTRLVSQRHVNPFGALYGGYMLRWVVEVGNVAAMSFVEGDAVLGYLDKMHFLTPARAGDLLKFRAWVVESRRTSVSVLVESYRAGGAELATVGRMVFVKIGLDGRPVPVNKGVRCDAGWEDLCLYFKRWRSEVDAAVRGEMPRAGDDWRDVSKFLAMPEDSVDGLLMDGGRLLFRLDELAYIKAFQFYPATYVTAGVNRIIFRKPIYVGDIVAVKTGVTYVGSTSVEIGFTVEAWGRGGVRHVADGYFTFVNMSEGRPTAINAPPRGDEAARRRKEESVKEAKLLKGLRPPAGAEPWLLQLARGSQQGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="40" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y903</accession>
    <name>B1Y903_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1305</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y903"/>
    <dbReference type="STRING" id="444157.Tneu_1305"/>
    <dbReference type="KEGG" id="tne:Tneu_1305"/>
    <dbReference type="eggNOG" id="arCOG11397">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_218214_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="17"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="43" mass="4843" checksum="2B44A7396F628097" modified="2008-05-20" version="1">MGMGGRQRTSLFMTTEEEAKKLGIEAEGEKKEEKKGGEKQKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="92" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y930</accession>
    <name>B1Y930_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="12">DEAD/DEAH box helicase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_1333</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="9">Belongs to the Lhr helicase family. Lhr-Core subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350678.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y930"/>
    <dbReference type="STRING" id="444157.Tneu_1333"/>
    <dbReference type="GeneID" id="6165203"/>
    <dbReference type="KEGG" id="tne:Tneu_1333"/>
    <dbReference type="eggNOG" id="arCOG00557">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002025_0_0_2"/>
    <dbReference type="OrthoDB" id="372104at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140097">
        <property type="term" value="F:catalytic activity, acting on DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18796">
        <property type="entry name" value="SF2_C_LHR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052511">
        <property type="entry name" value="ATP-dep_Helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017170">
        <property type="entry name" value="Lhr-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013701">
        <property type="entry name" value="Lhr-like_DEAD/DEAH_assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045628">
        <property type="entry name" value="Lhr_WH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47962:SF5">
        <property type="entry name" value="ATP-DEPENDENT HELICASE LHR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47962">
        <property type="entry name" value="ATP-DEPENDENT HELICASE LHR-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08494">
        <property type="entry name" value="DEAD_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19306">
        <property type="entry name" value="WHD_Lhr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037307">
        <property type="entry name" value="Lhr-like_helic_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 12" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="10">
        <location>
            <begin position="30"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="11">
        <location>
            <begin position="242"/>
            <end position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00093467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB40259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="912" mass="101611" checksum="A5D589BC5544A1A6" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y938</accession>
    <name>B1Y938_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF711 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1341</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350686.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y938"/>
    <dbReference type="STRING" id="444157.Tneu_1341"/>
    <dbReference type="GeneID" id="6165227"/>
    <dbReference type="KEGG" id="tne:Tneu_1341"/>
    <dbReference type="eggNOG" id="arCOG04321">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064235_0_0_2"/>
    <dbReference type="OrthoDB" id="36493at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007841">
        <property type="entry name" value="UPF0210"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37560:SF2">
        <property type="entry name" value="DUF711 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37560">
        <property type="entry name" value="UPF0210 PROTEIN SPR0218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05167">
        <property type="entry name" value="DUF711"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51998">
        <property type="entry name" value="PFL-like glycyl radical enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="321" mass="35626" checksum="48CDD15DD1CEA28A" modified="2008-05-20" version="1">MRVRSVTLHLGWSDDLSIAERFLDAAREAGALTLRVSVSPPPPRYAEEVINKLKNLGAEYISALHLYYGAEDLHRLVSLYGVFGTLNDVVEYLRFLKIIHLKGEVHLSRYVSLLVGEPTYNSPYFPASITTERGISISLLYPNDLEKIEDVERVLKRGEDVGRYIAETLGLKFLGVDGSLSPWGEESVARAVERLFGVRLGDVGSHHAIYTLNKAIAAASVKKVGFNEVMLPLAEDEELKRLVVEGALDLAKLVSYIPVCVPGLDMAPIKVTDWGRLKRLLYDVASLATSKRRPVGVRIFPVEVDEYYVEGFGKTPALDLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y995</accession>
    <name>B1Y995_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phosphomevalonate dehydratase small subunit-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1399</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350743.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y995"/>
    <dbReference type="STRING" id="444157.Tneu_1399"/>
    <dbReference type="GeneID" id="6165013"/>
    <dbReference type="KEGG" id="tne:Tneu_1399"/>
    <dbReference type="eggNOG" id="arCOG04279">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_141583_2_0_2"/>
    <dbReference type="OrthoDB" id="18062at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.10">
        <property type="entry name" value="Phosphohistidine domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002840">
        <property type="entry name" value="PMDh-S-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01989">
        <property type="entry name" value="AcnX_swivel_put"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52016">
        <property type="entry name" value="LeuD/IlvD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Phosphomevalonate dehydratase small subunit-like" evidence="2">
        <location>
            <begin position="23"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="135" mass="13960" checksum="51B10587057C4FF0" modified="2008-05-20" version="1">MLKALVRGKGRVSAEVVRLERPVSFLGDLDPATGVLAGVDVVGKIVALPYVKGSTVGPYVLWSAAKRGKSPLAIVAEKPDLMLVTACVLAGVPLFEGRVDAECINIDLETGEYDRCRSGGSVEVGSSHVGGVGPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9A1</accession>
    <name>B1Y9A1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350749.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9A1"/>
    <dbReference type="STRING" id="444157.Tneu_1405"/>
    <dbReference type="GeneID" id="6164812"/>
    <dbReference type="KEGG" id="tne:Tneu_1405"/>
    <dbReference type="eggNOG" id="arCOG01150">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075478_0_0_2"/>
    <dbReference type="OrthoDB" id="18264at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd07391">
        <property type="entry name" value="MPP_PF1019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024654">
        <property type="entry name" value="Calcineurin-like_PHP_lpxH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024173">
        <property type="entry name" value="Pesterase_MJ0037-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39323">
        <property type="entry name" value="BLR1149 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39323:SF1">
        <property type="entry name" value="BLR1149 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12850">
        <property type="entry name" value="Metallophos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000887">
        <property type="entry name" value="Pesterase_MJ0037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Calcineurin-like phosphoesterase" evidence="1">
        <location>
            <begin position="12"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="260" mass="28800" checksum="DCC02685C357B699" modified="2008-05-20" version="1">MRGVVLPLRRERILLLADTHVGYEVELRRERGVNAVSQTGRLIGGILELLEQHNATSIAILGDVKHELPVPRESVEEVKTFLRAIAKRAPLLLIPGNHDSLLEQIAVGIEGVEVAPNRGVLLGRYLLLHGHVKPAREDLERAEVVVMGHTHPAVVIRDEIGYAVKEPAILKIRASRTKLCRSLYGGPCKRRGHIRIVVLPAAHPLITGVDIREIPSLAAEGRTLLRHVEWKPENIEVYLADMTYLGTVADLSEPREESSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9A9</accession>
    <name>B1Y9A9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ssDNA-binding protein ThermoDBP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1413</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350757.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9A9"/>
    <dbReference type="STRING" id="444157.Tneu_1413"/>
    <dbReference type="GeneID" id="6165374"/>
    <dbReference type="KEGG" id="tne:Tneu_1413"/>
    <dbReference type="eggNOG" id="arCOG05578">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1387641_0_0_2"/>
    <dbReference type="OrthoDB" id="25176at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033787">
        <property type="entry name" value="ThermoDBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18361">
        <property type="entry name" value="ssDBP_DBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ssDNA-binding protein ThermoDBP" evidence="2">
        <location>
            <begin position="18"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="154"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="187" mass="21939" checksum="4CEC7B52D65EB0B5" modified="2008-05-20" version="1">MAEEERTVERAHVEEREGRQILVLRWNTGKTSAGRLFGRYGAGGRPDFFRLLFGAVAGSLREKFGPQGEELFSKIRDSEEFRRSSREIFDAAKEWFFNELAPKHGLDKGDIFMIITEIELDLTTGELRWRRDKTEFYYWVRSDRCHQVAAPKDCQELAQENARLRQEVEQLRKELAQIKERLASLLK</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9B8</accession>
    <name>RS4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein uS4</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">30S ribosomal protein S4</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps4</name>
        <name type="ordered locus">Tneu_1422</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="1">With S5 and S12 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS4 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350766.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9B8"/>
    <dbReference type="SMR" id="B1Y9B8"/>
    <dbReference type="STRING" id="444157.Tneu_1422"/>
    <dbReference type="GeneID" id="6164329"/>
    <dbReference type="KEGG" id="tne:Tneu_1422"/>
    <dbReference type="eggNOG" id="arCOG04239">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089738_1_1_2"/>
    <dbReference type="OrthoDB" id="10429at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="entry name" value="RNA-binding S4 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01306_A">
        <property type="entry name" value="Ribosomal_uS4_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022801">
        <property type="entry name" value="Ribosomal_uS4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022802">
        <property type="entry name" value="Ribosomal_uS4_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018079">
        <property type="entry name" value="Ribosomal_uS4_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005710">
        <property type="entry name" value="Ribosomal_uS4_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001912">
        <property type="entry name" value="Ribosomal_uS4_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003139">
        <property type="entry name" value="PRK04051.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01018">
        <property type="entry name" value="uS4_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11831">
        <property type="entry name" value="30S 40S RIBOSOMAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11831:SF5">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01390">
        <property type="entry name" value="Ribosomal_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55174">
        <property type="entry name" value="Alpha-L RNA-binding motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00632">
        <property type="entry name" value="RIBOSOMAL_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50889">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000140806" description="Small ribosomal subunit protein uS4">
        <location>
            <begin position="1"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="S4 RNA-binding" evidence="1">
        <location>
            <begin position="106"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="159" mass="18460" checksum="2D91BCDDBA1FCECF" modified="2008-05-20" version="1">MGGLKKPKKKYLAGKPKKIWNKQLLLEELQLMGEYGLRNKKELWLARAHLKWIVRRARSLLSMTAEERAPLELPFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVSSPGFLVPRELEDKISLIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9D6</accession>
    <name>B1Y9D6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Arcadin 1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350784.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9D6"/>
    <dbReference type="STRING" id="444157.Tneu_1440"/>
    <dbReference type="GeneID" id="6164358"/>
    <dbReference type="KEGG" id="tne:Tneu_1440"/>
    <dbReference type="eggNOG" id="arCOG05582">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_160450_0_0_2"/>
    <dbReference type="OrthoDB" id="24478at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040827">
        <property type="entry name" value="Arcadin_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18653">
        <property type="entry name" value="Arcadin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Arcadin 1" evidence="1">
        <location>
            <begin position="3"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="113" mass="12377" checksum="62335A8CA5A29D48" modified="2008-05-20" version="1">MATIRGVVVSKQLVYDPTGAKYIKIDVVEERELPGPVAAFSAQDEQTAQLMREVMPLVTQIVRSLPFGGGKIAVPRLTLWLTDEEVEVFGDIDVGDVVLISVEKGEIRVRPEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="33" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9I2</accession>
    <name>B1Y9I2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1487</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9I2"/>
    <dbReference type="KEGG" id="tne:Tneu_1487"/>
    <dbReference type="HOGENOM" id="CLU_2821066_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="66" mass="7289" checksum="B026AA772ECE1A84" modified="2008-05-20" version="1">MTLEGSVEIELKISVRDALLDWIVSQRKALQISLDEGYAAVSDGTNGVLIRYEVRGDKVVLKSLVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9J4</accession>
    <name>B1Y9J4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CopG domain protein DNA-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1499</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350842.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9J4"/>
    <dbReference type="STRING" id="444157.Tneu_1499"/>
    <dbReference type="GeneID" id="6165522"/>
    <dbReference type="KEGG" id="tne:Tneu_1499"/>
    <dbReference type="eggNOG" id="arCOG05596">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1590949_0_0_2"/>
    <dbReference type="OrthoDB" id="24300at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="169" mass="19032" checksum="03F569373B9B9203" modified="2008-05-20" version="1">MSKPLREFDLTYNDLFRAPDKEGAIVSVRVHRKVKAVLEELAKSEGLDGVSELVRYLIAGYLLGKYNIERPKEKVLVEPIVLTVNVQRGGGQTVDDVDYELAAEKVTAVIRDVEDYIRKIKAGLVPRNPEIAMRLGEKVARALKTAKKLGMEEEYIKLMKLKAQLSMYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9N4</accession>
    <name>B1Y9N4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1539</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350882.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9N4"/>
    <dbReference type="STRING" id="444157.Tneu_1539"/>
    <dbReference type="GeneID" id="6165376"/>
    <dbReference type="KEGG" id="tne:Tneu_1539"/>
    <dbReference type="eggNOG" id="arCOG05679">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2893385_0_0_2"/>
    <dbReference type="OrthoDB" id="24075at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="63" mass="7033" checksum="D75A6167B9EBFCB7" modified="2008-05-20" version="1">MPSGVKNKIYEYLSQNKGKELTAEEIAKIIGVEKVAVVKAQLTRLIREGKVEKTAEGRYKVKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Q8</accession>
    <name>B1Y9Q8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF763 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0022</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349402.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Q8"/>
    <dbReference type="GeneID" id="6164901"/>
    <dbReference type="KEGG" id="tne:Tneu_0022"/>
    <dbReference type="eggNOG" id="arCOG04253">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061722_0_0_2"/>
    <dbReference type="OrthoDB" id="9948at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008482">
        <property type="entry name" value="DUF763"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38597">
        <property type="entry name" value="BLL3834 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38597:SF1">
        <property type="entry name" value="BLL3834 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05559">
        <property type="entry name" value="DUF763"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB38980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="370" mass="41082" checksum="1516E71928C56564" modified="2008-05-20" version="1">MKLGGVADLPLHDGQVPPWLLSRMRKLAALMLHVMNDLYGPDGIVERFAHPVFFQAFNNVIGMDWDSSGSTTVTTAVVKEVLRDSPIPVRVAGGKGRRALETPAELTEIARRFDLDAEALVTASRLTAKVDNALVQDGYQIYHHAFFVSASGRWAVVQQGMNPEVKMARRYHWLSTDDFFNSPHTGIVGVRRSRVLNLASRYSADDRAVVLELINGGPQRVARHLAALRGQTTLVGAAYYHPYMRIDVDVRAVLRNLPPPGSVSNFRELLLKHGVGPKTLRALALVAEVVFKAPADWNDPAVDPFKFAFAVGGKDGVPYPVDRRTYDELIALLDAVVERARGDPGLYRYLSHLAKKSESWRFPAERKRPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9U3</accession>
    <name>B1Y9U3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA-directed RNA polymerase subunit Rpo4</fullName>
            <ecNumber evidence="1">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">DNA-directed RNA polymerase subunit F</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpo4</name>
        <name evidence="1" type="synonym">rpoF</name>
        <name evidence="2" type="ordered locus">Tneu_1569</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. This subunit is less well bound than the others.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the RNA polymerase complex. Forms a stalk with Rpo7 that extends from the main structure.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic RPB4 RNA polymerase subunit family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350912.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9U3"/>
    <dbReference type="STRING" id="444157.Tneu_1569"/>
    <dbReference type="GeneID" id="6166198"/>
    <dbReference type="KEGG" id="tne:Tneu_1569"/>
    <dbReference type="eggNOG" id="arCOG01016">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_165894_1_0_2"/>
    <dbReference type="OrthoDB" id="25158at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.80">
        <property type="entry name" value="HRDC domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00864">
        <property type="entry name" value="RNApol_arch_Rpo4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010997">
        <property type="entry name" value="HRDC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044876">
        <property type="entry name" value="HRDC_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005574">
        <property type="entry name" value="Rpb4/RPC9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010924">
        <property type="entry name" value="Rpo4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39646:SF1">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE SUBUNIT RPO4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39646">
        <property type="entry name" value="RNA POLYMERASE RPB4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03874">
        <property type="entry name" value="RNA_pol_Rpb4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005053">
        <property type="entry name" value="RNA_pol_F_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47819">
        <property type="entry name" value="HRDC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="112" mass="13023" checksum="656E8CDBFD62E180" modified="2008-05-20" version="1">MSVKRIRRSEEVTNAKALEILRSISNTAQQLTEDQRKTLDYLEKVTKRTPEEAESLVRQLVEKFGFTRVTAIQLVNLSIESIDELRTALSYLERRDYSESELKEIFKTLTGQ</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9U5</accession>
    <name>IF5A_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Translation initiation factor 5A</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Hypusine-containing protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">eIF-5A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name type="primary">eIF5A</name>
        <name type="ordered locus">Tneu_1571</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Functions by promoting the formation of the first peptide bond.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the eIF-5A family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350914.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9U5"/>
    <dbReference type="SMR" id="B1Y9U5"/>
    <dbReference type="STRING" id="444157.Tneu_1571"/>
    <dbReference type="GeneID" id="6166239"/>
    <dbReference type="KEGG" id="tne:Tneu_1571"/>
    <dbReference type="eggNOG" id="arCOG04277">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102600_3_0_2"/>
    <dbReference type="OrthoDB" id="23689at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045901">
        <property type="term" value="P:positive regulation of translational elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045905">
        <property type="term" value="P:positive regulation of translational termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04467">
        <property type="entry name" value="S1_aIF5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.30:FF:000038">
        <property type="entry name" value="Translation initiation factor 5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00085">
        <property type="entry name" value="eIF_5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001884">
        <property type="entry name" value="IF5A-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048670">
        <property type="entry name" value="IF5A-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020189">
        <property type="entry name" value="IF5A_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_uL2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019769">
        <property type="entry name" value="Trans_elong_IF5A_hypusine_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022847">
        <property type="entry name" value="Transl_elong_IF5A_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00037">
        <property type="entry name" value="eIF_5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003076">
        <property type="entry name" value="PRK03999.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11673">
        <property type="entry name" value="TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01287">
        <property type="entry name" value="eIF-5a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21485">
        <property type="entry name" value="IF5A-like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003025">
        <property type="entry name" value="eIF5A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01376">
        <property type="entry name" value="eIF-5a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="Translation proteins SH3-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00302">
        <property type="entry name" value="IF5A_HYPUSINE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0385">Hypusine</keyword>
    <keyword id="KW-0396">Initiation factor</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000093010" description="Translation initiation factor 5A">
        <location>
            <begin position="1"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="modified residue" description="Hypusine" evidence="1">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00085"/>
        </source>
    </evidence>
    <sequence length="132" mass="14597" checksum="E3AAB178637DFD69" modified="2008-05-20" version="1">MSTKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQVLSISGDIIQLMDMRDYKTIEVPMSYVEEEAKGRLAPGAEVEVWQILDRFKIVRVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9W3</accession>
    <name>B1Y9W3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Dihydroorotate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1590</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Pyrimidine metabolism; UMP biosynthesis via de novo pathway.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350932.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9W3"/>
    <dbReference type="STRING" id="444157.Tneu_1590"/>
    <dbReference type="GeneID" id="6165786"/>
    <dbReference type="KEGG" id="tne:Tneu_1590"/>
    <dbReference type="eggNOG" id="arCOG00603">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_917034_0_0_2"/>
    <dbReference type="OrthoDB" id="36608at2157"/>
    <dbReference type="UniPathway" id="UPA00070"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004152">
        <property type="term" value="F:dihydroorotate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050074">
        <property type="entry name" value="DHO_dehydrogenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012135">
        <property type="entry name" value="Dihydroorotate_DH_1_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005720">
        <property type="entry name" value="Dihydroorotate_DH_cat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48109:SF4">
        <property type="entry name" value="DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48109">
        <property type="entry name" value="DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01180">
        <property type="entry name" value="DHO_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000164">
        <property type="entry name" value="DHO_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51395">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0288">FMN</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Dihydroorotate dehydrogenase catalytic" evidence="8">
        <location>
            <begin position="42"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="295" mass="32347" checksum="C7CD6FF0A2E63E58" modified="2008-05-20" version="1">MALLTFFGRLVHYVHPEISHRLGSLLFSLPLPPCRCRDSWEVGGVKTCGPVGVAAGLDKTGAYSRFLSFFCPGFIVVGSTLPRRRLGNKPPRVARVRPYSLVNAMGLNSPGIASVVSRLAGLNYPIFISLAGFSVEDFLVQLAYLRRYYKPAAVEVNISSPTYKGFWRNVPQLADVDLPVFVKVGPSTDVASVVRNVRRLGWGLVVTNTFPVEDGRISVGRGGLSGLLLYRHGYRLLERLREAAGGDVPIIYSGGVFTCRQLGEVLRLADAAEVLTSVLYFTPYILKALNRCVDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9X5</accession>
    <name>B1Y9X5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">B3/4 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1602</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350944.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9X5"/>
    <dbReference type="STRING" id="444157.Tneu_1602"/>
    <dbReference type="GeneID" id="6166214"/>
    <dbReference type="KEGG" id="tne:Tneu_1602"/>
    <dbReference type="eggNOG" id="arCOG04250">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076869_2_0_2"/>
    <dbReference type="OrthoDB" id="35982at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.40.10">
        <property type="entry name" value="Phenylalanyl-trna Synthetase, Chain B, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005146">
        <property type="entry name" value="B3/B4_tRNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020825">
        <property type="entry name" value="Phe-tRNA_synthase-like_B3/B4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39209">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39209:SF2">
        <property type="entry name" value="CYTOPLASMIC PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03483">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00873">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56037">
        <property type="entry name" value="PheT/TilS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B3/B4 tRNA-binding" evidence="1">
        <location>
            <begin position="60"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="221" mass="24812" checksum="C7729CDB5DC0CB66" modified="2008-05-20" version="1">MITILNDVKSLGVFVAYDVVYGVDNMKYTPQLEEAINAAVEETRKTLSLETLREHPVIRAYRDFYWKTLKIDPTKQRPAQEALLRRVLRGEPLPRINPVVDAGNAVSIKYVVPIGIYDIAKIRGETLRLRRSRRGEVFRPIGGQPYELDNQIVLASDGQILHVYPYRDSVETKVDETTRDVLVVIAGVPGVEEERLLEAARHLRALLTLLGGAAAGDIRLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9X6</accession>
    <name>B1Y9X6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">GTPase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1603</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350945.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9X6"/>
    <dbReference type="GeneID" id="6166128"/>
    <dbReference type="KEGG" id="tne:Tneu_1603"/>
    <dbReference type="eggNOG" id="arCOG01229">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046378_0_0_2"/>
    <dbReference type="OrthoDB" id="14509at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd01983">
        <property type="entry name" value="SIMIBI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053199">
        <property type="entry name" value="cDPG_synthetase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42869">
        <property type="entry name" value="SLL0572 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42869:SF1">
        <property type="entry name" value="SLL0572 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="433" mass="47884" checksum="9FF183EB1E398648" modified="2008-05-20" version="1">MRRVAIIGAAGRDFHVFNTVYRGSGEARVVAFLMTQIPIPARRYPPSLSGVPEGVPIYVWRSYEELTRYLRELRVDEAVLAYSDLLYDEVGHIISAVLASGASFRIHGPNETYLHSIRPVFAITATRTGAGKSTVSREVVKDLAGRGYKPVVVRHPMPYRELEVSVAEVFKSERDLERLTFEEREEYEQYVEMGVTVLAGVDYGVVLREAEKVGDVIVWDGGNNDFPFFRPNYMVVVTDARRAGHEVGSFPGEVNLRLADAVVITKVGEAGEEAVRRVVSNVTRVNPRASITKADLEVYLSGDVAGKRALVIEDAPTVTHGGLPYGAGYIAALKYGATVVDPRPYAVGVIKKVYEDYKIGPVLPSLGYTPEQRRDLEATIERADADVVIVATPARIEKAIKIDKPVVRASWRLRVLEGPTVGELVEAFLERLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Y3</accession>
    <name>B1Y9Y3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1610</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Y3"/>
    <dbReference type="STRING" id="444157.Tneu_1610"/>
    <dbReference type="KEGG" id="tne:Tneu_1610"/>
    <dbReference type="eggNOG" id="arCOG05669">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_188847_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="102" mass="11913" checksum="4CD81F27470AF46B" modified="2008-05-20" version="1">MPQDIKTNVFSVVEGVLLIRELEGAPYELVDILRFEKGRRYIYKLPAGDREYYIHVVSLRDAVYVELWHPSYAVPLLVFRVSDRDEMSRLFILLKSLAAALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Z8</accession>
    <name>B1Y9Z8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1625</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350967.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Z8"/>
    <dbReference type="STRING" id="444157.Tneu_1625"/>
    <dbReference type="GeneID" id="6165575"/>
    <dbReference type="KEGG" id="tne:Tneu_1625"/>
    <dbReference type="eggNOG" id="arCOG00946">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044176_1_0_2"/>
    <dbReference type="OrthoDB" id="5682at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027596">
        <property type="entry name" value="AmmeMemoSam_rS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034457">
        <property type="entry name" value="Organic_radical-activating"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016431">
        <property type="entry name" value="Pyrv-formate_lyase-activ_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR04337">
        <property type="entry name" value="AmmeMemoSam_rS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30352:SF5">
        <property type="entry name" value="PYRUVATE FORMATE-LYASE 1-ACTIVATING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30352">
        <property type="entry name" value="PYRUVATE FORMATE-LYASE-ACTIVATING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004869">
        <property type="entry name" value="PflX_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01101">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="66"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR004869-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="363" mass="41651" checksum="7E829B8A1972638A" modified="2008-05-20" version="1">MEAVLSRRLPDGRIECLACARRCKLREGQTGFCGVRTVRGGALRLDVYGLISAIAVDPIEKKPLTHFYPGALVLSFSTFGCNWACQYCQNYELSQRRRAEGFEVTPELLVKIAESYGAHGITYTYNEPTIFIEFAHDVGVLARARGLFNTFVTNGYMTPEAVRYASEFLDAATVDFKGNADEKFLRRYVYVQDAEPIFETLSELKKYGIWVEVTDLVVPQIGDDLEKARRLVRRVIDILGPDVPMHFLRFHPDYNLRHLPPTPVETLEKHVEVAREEGARFAYVGNVPGHKYEHTYCPECGRVVIRRRGFDILEINLEERGGEYRCRFCGAKIPIRGRVAPTWRDELRFIHVPIHAYARWVKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA38</accession>
    <name>B1YA38_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, ModE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0054</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349433.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA38"/>
    <dbReference type="STRING" id="444157.Tneu_0054"/>
    <dbReference type="GeneID" id="6165026"/>
    <dbReference type="KEGG" id="tne:Tneu_0054"/>
    <dbReference type="eggNOG" id="arCOG00223">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_125440_2_1_2"/>
    <dbReference type="OrthoDB" id="36889at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="LysR_HTH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051815">
        <property type="entry name" value="Molybdate_resp_trans_reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30432:SF1">
        <property type="entry name" value="DNA-BINDING TRANSCRIPTIONAL DUAL REGULATOR MODE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30432">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR MODE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="1">
        <location>
            <begin position="26"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="138" mass="15692" checksum="E95E52CFAA7406F1" modified="2008-05-20" version="1">MAVKVKMRIWVDKDGQEILGPGIYNILKALEETGSIASAARKLGYSYKFIWTYIKKLEDALGVPLVESRRGGKERGVTELTEVGKLLVAYYESMNRELENVVKTWESKFSELVATLEQYSKEAKEEGGGEEIPYYEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA44</accession>
    <name>B1YA44_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Transcription termination factor FttA</fullName>
            <ecNumber evidence="12">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">fttA</name>
        <name evidence="15" type="ordered locus">Tneu_0060</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Terminates transcription on the whole genome. Termination is linked to FttA-mediated RNA cleavage and does not require NTP hydrolysis. Cleaves endonucleolytically at the RNA exit channel of RNA polymerase (RNAP); the 5'-3' exonuclease activity of this protein degrades the nascent RNA released from RNAP.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="12">Binds 2 Zn(2+) ions, which are required for nuclease activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Homodimer. Interacts with RNA polymerase (RNAP), interacts with the Spt4-Spt5 complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. FttA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="12"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349439.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA44"/>
    <dbReference type="GeneID" id="6165047"/>
    <dbReference type="KEGG" id="tne:Tneu_0060"/>
    <dbReference type="eggNOG" id="arCOG00543">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009673_5_1_2"/>
    <dbReference type="OrthoDB" id="7155at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:RNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004532">
        <property type="term" value="F:RNA exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16295">
        <property type="entry name" value="TTHA0252-CPSF-like_MBL-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00870">
        <property type="entry name" value="FttA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019975">
        <property type="entry name" value="aCPSF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022712">
        <property type="entry name" value="Beta_Casp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050698">
        <property type="entry name" value="MBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011108">
        <property type="entry name" value="RMMBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033769">
        <property type="entry name" value="TffA_KH"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03675">
        <property type="entry name" value="arCOG00543"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11203:SF51">
        <property type="entry name" value="CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11203">
        <property type="entry name" value="CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10996">
        <property type="entry name" value="Beta-Casp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17214">
        <property type="entry name" value="KH_TffA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16661">
        <property type="entry name" value="Lactamase_B_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07521">
        <property type="entry name" value="RMMBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01027">
        <property type="entry name" value="Beta-Casp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 12" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="7 12" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="5 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 12" id="KW-0540">Nuclease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="11" id="KW-0804">Transcription</keyword>
    <keyword evidence="9 12" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 12" id="KW-0806">Transcription termination</keyword>
    <keyword evidence="6 12" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Metallo-beta-lactamase" evidence="13">
        <location>
            <begin position="186"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="domain" description="Beta-Casp" evidence="14">
        <location>
            <begin position="411"/>
            <end position="543"/>
        </location>
    </feature>
    <feature type="region of interest" description="Metallo-beta-lactamase C-terminus" evidence="12">
        <location>
            <begin position="576"/>
            <end position="634"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="232"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="234"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="319"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="342"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="342"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="601"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM01027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB39018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="634" mass="70954" checksum="45B70208AF9B9861" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA59</accession>
    <name>B1YA59_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">polynucleotide 5'-hydroxyl-kinase</fullName>
            <ecNumber evidence="2">2.7.1.78</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_0075</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of both single-stranded RNA (ssRNA) and single-stranded DNA (ssDNA). Exhibits a strong preference for ssRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>a 5'-end dephospho-2'-deoxyribonucleoside-DNA + ATP = a 5'-end 5'-phospho-2'-deoxyribonucleoside-DNA + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15669"/>
            <dbReference type="Rhea" id="RHEA-COMP:13180"/>
            <dbReference type="Rhea" id="RHEA-COMP:13184"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:136412"/>
            <dbReference type="ChEBI" id="CHEBI:136416"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.78"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>a 5'-end dephospho-ribonucleoside-RNA + ATP = a 5'-end 5'-phospho-ribonucleoside-RNA + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:54580"/>
            <dbReference type="Rhea" id="RHEA-COMP:13936"/>
            <dbReference type="Rhea" id="RHEA-COMP:15179"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:138282"/>
            <dbReference type="ChEBI" id="CHEBI:138284"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.78"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <dbReference type="EC" id="2.7.1.78" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA59"/>
    <dbReference type="STRING" id="444157.Tneu_0075"/>
    <dbReference type="KEGG" id="tne:Tneu_0075"/>
    <dbReference type="eggNOG" id="arCOG04127">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051301_1_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051734">
        <property type="term" value="F:ATP-dependent polynucleotide 5'-hydroxyl-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045116">
        <property type="entry name" value="Clp1/Grc3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032319">
        <property type="entry name" value="CLP1_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12755">
        <property type="entry name" value="CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12755:SF3">
        <property type="entry name" value="POLYNUCLEOTIDE 5'-HYDROXYL-KINASE NOL9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16575">
        <property type="entry name" value="CLP1_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Clp1 P-loop" evidence="10">
        <location>
            <begin position="85"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00044641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00044673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF16575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="355" mass="38999" checksum="BC4D88DC12F1A872" modified="2008-05-20" version="1">MEVFTVEVPEGYSALVRGPAKVRCRGACRVFGGFFQGFEVPPHKQYPVEGPAVFELESGLLALARGSAIPRDWDMELEGVVALVGPPDSGKSSLSTYLLNTHVARGRSVCVVDADVGQSDIGPPGFVAYSYTAAPAPHISELEPHDAYYVGSTNLQGLEELLVAGVVWAVKRCQAHYPHLTVVNTPGWTTGRGIQLLRAVVDAVAPAVVNIGEALLPGRRVSKPAQVLPRGPQERKELRNLSYRRHVKIVDRVEISHDMLTLCTWERGLNCPWGRYLPADVAEPQKRGREYAVPPHHLRHLFAGLYRGGRLAGYAIVEKFEPRPTAYVTATDFDEVRIGKIRLDPHALEELEPLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA73</accession>
    <name>B1YA73_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">EamA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0089</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349468.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA73"/>
    <dbReference type="STRING" id="444157.Tneu_0089"/>
    <dbReference type="GeneID" id="6165037"/>
    <dbReference type="KEGG" id="tne:Tneu_0089"/>
    <dbReference type="eggNOG" id="arCOG00271">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033863_0_2_2"/>
    <dbReference type="OrthoDB" id="214554at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037185">
        <property type="entry name" value="EmrE-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22911">
        <property type="entry name" value="ACYL-MALONYL CONDENSING ENZYME-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22911:SF76">
        <property type="entry name" value="EAMA DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103481">
        <property type="entry name" value="Multidrug resistance efflux transporter EmrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="165"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="197"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="257"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="7"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="135"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="285" mass="28944" checksum="991059B4161795AF" modified="2008-05-20" version="1">MLWLLPVGVLAISSASVLIRLTPADPIAITFWRLAFATAAVLTLGLVRGLELPRGRALTYSALSGVFLAAHFLSWIPSLFLTTVAASTTLVNVHPLFMLPLSRRLGERVGRGTAVGAAVAVAGSVLITLSPGGLLGNLLALAGALSFAGYLAVGRLVRAAVGTLGYTAVSYGVAALISLAVGLALGVNLTNYSGYTFAMFLLIASVPMMAGHTVFNYLLGRYRAVTIAVATLGEPVGAALLAAAVLGEVPAGGPAVFGVPVQAVGVAVTLVGLALVIREELKISG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAB5</accession>
    <name>B1YAB5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Transcriptional regulator</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1642</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350983.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAB5"/>
    <dbReference type="STRING" id="444157.Tneu_1642"/>
    <dbReference type="GeneID" id="6165718"/>
    <dbReference type="KEGG" id="tne:Tneu_1642"/>
    <dbReference type="eggNOG" id="arCOG04479">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_162441_0_0_2"/>
    <dbReference type="OrthoDB" id="30924at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038767">
        <property type="entry name" value="PF0610-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049159">
        <property type="entry name" value="PF0610-like_wHTH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057022">
        <property type="entry name" value="PF0610-like_Zn_ribbon_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40663">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40663:SF2">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21476">
        <property type="entry name" value="PF0610-like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23470">
        <property type="entry name" value="Zn_ribbon_PF0610"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PF0610-like winged HTH N-terminal" evidence="1">
        <location>
            <begin position="3"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="domain" description="PF0610-like rubredoxin-like zinc beta-ribbon C-terminal" evidence="2">
        <location>
            <begin position="59"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF21476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF23470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="99" mass="11726" checksum="79888639D99A0F72" modified="2008-05-20" version="1">METVRERLAKVLLEAEEPLDIYQLHALVQTDLKPSELYEELEHVKKTLKRMGYRLEVVPATCKRCGFQFTDRERLKKPSRCPRCKSERIDPPRFYVTSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAC3</accession>
    <name>B1YAC3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350991.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAC3"/>
    <dbReference type="STRING" id="444157.Tneu_1650"/>
    <dbReference type="GeneID" id="6165526"/>
    <dbReference type="KEGG" id="tne:Tneu_1650"/>
    <dbReference type="eggNOG" id="arCOG05662">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2613772_0_0_2"/>
    <dbReference type="OrthoDB" id="27956at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="78" mass="8614" checksum="589AF57F7E3F3A9E" modified="2008-05-20" version="1">MIVKVVKIRDVAIIKLDAAPCADVFIFRAEGRELEICGSSYVLDGEIEEFRRGLLLLGGVPYFVECDMGRCVAARAHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="96" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAC6</accession>
    <name>B1YAC6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Mevalonate kinase</fullName>
            <shortName evidence="11">MK</shortName>
            <shortName evidence="11">MVK</shortName>
            <ecNumber evidence="11">2.7.1.36</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">mvk</name>
        <name evidence="14" type="ordered locus">Tneu_1653</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the phosphorylation of (R)-mevalonate (MVA) to (R)-mevalonate 5-phosphate (MVAP). Functions in the mevalonate (MVA) pathway leading to isopentenyl diphosphate (IPP), a key precursor for the biosynthesis of isoprenoid compounds such as archaeal membrane lipids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>(R)-mevalonate + ATP = (R)-5-phosphomevalonate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17065"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:36464"/>
            <dbReference type="ChEBI" id="CHEBI:58146"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.36"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="10 11">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via mevalonate pathway; isopentenyl diphosphate from (R)-mevalonate: step 1/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the GHMP kinase family. Mevalonate kinase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.36" evidence="11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350994.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAC6"/>
    <dbReference type="STRING" id="444157.Tneu_1653"/>
    <dbReference type="GeneID" id="6166331"/>
    <dbReference type="KEGG" id="tne:Tneu_1653"/>
    <dbReference type="eggNOG" id="arCOG01028">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017814_0_0_2"/>
    <dbReference type="OrthoDB" id="19001at2157"/>
    <dbReference type="UniPathway" id="UPA00057">
        <property type="reaction ID" value="UER00098"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004496">
        <property type="term" value="F:mevalonate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019287">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, mevalonate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.890">
        <property type="entry name" value="GHMP kinase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00217">
        <property type="entry name" value="Mevalonate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013750">
        <property type="entry name" value="GHMP_kinase_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036554">
        <property type="entry name" value="GHMP_kinase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006205">
        <property type="entry name" value="Mev_gal_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022937">
        <property type="entry name" value="Mevalonate_kinase_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribsml_uS5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00549">
        <property type="entry name" value="mevalon_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43290">
        <property type="entry name" value="MEVALONATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43290:SF2">
        <property type="entry name" value="MEVALONATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08544">
        <property type="entry name" value="GHMP_kinases_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00959">
        <property type="entry name" value="MEVGALKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55060">
        <property type="entry name" value="GHMP Kinase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 11" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="5 11 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="2 11" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="8 11" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GHMP kinase N-terminal" evidence="12">
        <location>
            <begin position="74"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="GHMP kinase C-terminal" evidence="13">
        <location>
            <begin position="225"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="11">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF08544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB40575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="314" mass="33154" checksum="878438E2D53340CA" modified="2008-05-20" version="1">MPRVFAPGVIKLFGEHAVVYGKPAIAATIDKGVHVECVRGERLEVVTVAPPASVRYIPGERRFDAFGLERFFAYVDAALRVGEERWGSVSARFTITSDLPPSVGAATSAAVAVGLLKAYAACAGVDVGGEELAKLGHRVELEVQGIASPMDTAAVSIGGVLKIWASPFRAERLEVQLPQLYVAVLPRRGTTGEIVADVRALLGRRPSARAVLDAIGAVVDEAEVCLRQGDLVCLGELMYINNWLLGALGVVDSRAVSLLETLRPFIYGGKISGAGRGGVVLLLPRDADAVEKALYAMGQTYIKVSLFASGATLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAG2</accession>
    <name>B1YAG2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">dolichyl-phosphooligosaccharide-protein glycotransferase</fullName>
            <ecNumber evidence="6">2.4.99.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">Oligosaccharyl transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="ordered locus">Tneu_1689</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="16">
            <text>an archaeal dolichyl phosphooligosaccharide + [protein]-L-asparagine = an archaeal dolichyl phosphate + a glycoprotein with the oligosaccharide chain attached by N-beta-D-glycosyl linkage to a protein L-asparagine.</text>
            <dbReference type="EC" id="2.4.99.21"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Endomembrane system</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the STT3 family.</text>
    </comment>
    <dbReference type="EC" id="2.4.99.21" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351030.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAG2"/>
    <dbReference type="STRING" id="444157.Tneu_1689"/>
    <dbReference type="CAZy" id="GT66">
        <property type="family name" value="Glycosyltransferase Family 66"/>
    </dbReference>
    <dbReference type="GeneID" id="6165113"/>
    <dbReference type="KEGG" id="tne:Tneu_1689"/>
    <dbReference type="eggNOG" id="arCOG02044">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_361188_0_0_2"/>
    <dbReference type="OrthoDB" id="12184at2157"/>
    <dbReference type="BRENDA" id="2.4.99.18">
        <property type="organism ID" value="6328"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00378"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004576">
        <property type="term" value="F:oligosaccharyl transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003674">
        <property type="entry name" value="Oligo_trans_STT3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048307">
        <property type="entry name" value="STT3_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13872">
        <property type="entry name" value="DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13872:SF1">
        <property type="entry name" value="DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT STT3B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02516">
        <property type="entry name" value="STT3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 19" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="14" id="KW-0464">Manganese</keyword>
    <keyword evidence="13 17" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 19" id="KW-0808">Transferase</keyword>
    <keyword evidence="9 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12 17" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="102"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="138"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="168"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="249"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="281"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="314"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="438"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="domain" description="Oligosaccharyl transferase STT3 N-terminal" evidence="18">
        <location>
            <begin position="17"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00030679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00034066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF02516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="ACB40611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="781" mass="85422" checksum="DA770B324CA0A4A9" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="93" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAG6</accession>
    <name>B1YAG6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9">Glutamine--fructose-6-phosphate aminotransferase [isomerizing]</fullName>
            <ecNumber evidence="2 9">2.6.1.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">D-fructose-6-phosphate amidotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">GFAT</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Glucosamine-6-phosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Hexosephosphate aminotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">L-glutamine--D-fructose-6-phosphate amidotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">glmS</name>
        <name evidence="12" type="ordered locus">Tneu_1693</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:13237"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58725"/>
            <dbReference type="ChEBI" id="CHEBI:61527"/>
            <dbReference type="EC" id="2.6.1.16"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.6.1.16" evidence="2 9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351034.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAG6"/>
    <dbReference type="STRING" id="444157.Tneu_1693"/>
    <dbReference type="GeneID" id="6165383"/>
    <dbReference type="KEGG" id="tne:Tneu_1693"/>
    <dbReference type="eggNOG" id="arCOG00057">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012520_7_0_2"/>
    <dbReference type="OrthoDB" id="372195at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004360">
        <property type="term" value="F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006002">
        <property type="term" value="P:fructose 6-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006487">
        <property type="term" value="P:protein N-linked glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006047">
        <property type="term" value="P:UDP-N-acetylglucosamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00714">
        <property type="entry name" value="GFAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05008">
        <property type="entry name" value="SIS_GlmS_GlmD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05009">
        <property type="entry name" value="SIS_GlmS_GlmD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.60.20.10:FF:000006">
        <property type="entry name" value="Glutamine--fructose-6-phosphate aminotransferase [isomerizing]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10490">
        <property type="entry name" value="Glucose-6-phosphate isomerase like protein, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="entry name" value="Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00164">
        <property type="entry name" value="GlmS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005855">
        <property type="entry name" value="GFAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047084">
        <property type="entry name" value="GFAT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035466">
        <property type="entry name" value="GlmS/AgaS_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035490">
        <property type="entry name" value="GlmS/FrlB_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01135">
        <property type="entry name" value="glmS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001484">
        <property type="entry name" value="PRK00331.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10937">
        <property type="entry name" value="GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10937:SF0">
        <property type="entry name" value="GLUTAMINE--FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13522">
        <property type="entry name" value="GATase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SIS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9 12" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 9" id="KW-0808">Transferase</keyword>
    <feature type="initiator methionine" description="Removed" evidence="9">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="10">
        <location>
            <begin position="2"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="11">
        <location>
            <begin position="282"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="11">
        <location>
            <begin position="450"/>
            <end position="590"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for GATase activity" evidence="9">
        <location>
            <position position="2"/>
        </location>
    </feature>
    <feature type="active site" description="For Fru-6P isomerization activity" evidence="9">
        <location>
            <position position="595"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00055466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB40615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="600" mass="64656" checksum="FBB14B33411C5C1D" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAH3</accession>
    <name>B1YAH3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1702</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351041.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAH3"/>
    <dbReference type="STRING" id="444157.Tneu_1702"/>
    <dbReference type="GeneID" id="6165291"/>
    <dbReference type="KEGG" id="tne:Tneu_1702"/>
    <dbReference type="eggNOG" id="arCOG07697">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_146469_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="129"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="149" mass="15741" checksum="D8AFA63C34F8F48B" modified="2008-05-20" version="1">MEKRSKTVKLAALLAALAAAVMAVALSAGAFKVTYTYENGVVKMVDPQGSVHTVALNLKEGVKKAEIRLLPNGSAVLLEGGRPIAIIKEIVMKGGEARRVEFKLLPNGTLLVIDGGRIWSRGRIEWKGGAEGAGQAGEKPSPDIIKSPR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAN0</accession>
    <name>HIS2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphoribosyl-ATP pyrophosphatase</fullName>
            <shortName evidence="1">PRA-PH</shortName>
            <ecNumber evidence="1">3.6.1.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hisE</name>
        <name type="ordered locus">Tneu_0152</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>1-(5-phospho-beta-D-ribosyl)-ATP + H2O = 1-(5-phospho-beta-D-ribosyl)-5'-AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:22828"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:59457"/>
            <dbReference type="ChEBI" id="CHEBI:73183"/>
            <dbReference type="EC" id="3.6.1.31"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 2/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PRA-PH family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.31" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349530.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAN0"/>
    <dbReference type="SMR" id="B1YAN0"/>
    <dbReference type="STRING" id="444157.Tneu_0152"/>
    <dbReference type="GeneID" id="6165018"/>
    <dbReference type="KEGG" id="tne:Tneu_0152"/>
    <dbReference type="eggNOG" id="arCOG02677">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_123337_0_0_2"/>
    <dbReference type="OrthoDB" id="39686at2157"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004636">
        <property type="term" value="F:phosphoribosyl-ATP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:L-histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11534">
        <property type="entry name" value="NTP-PPase_HisIE_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.1080:FF:000002">
        <property type="entry name" value="Histidine biosynthesis bifunctional protein HisIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1080">
        <property type="entry name" value="MazG-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01020">
        <property type="entry name" value="HisE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008179">
        <property type="entry name" value="HisE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021130">
        <property type="entry name" value="PRib-ATP_PPHydrolase-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03188">
        <property type="entry name" value="histidine_hisI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42945">
        <property type="entry name" value="HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42945:SF1">
        <property type="entry name" value="HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN HIS7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01503">
        <property type="entry name" value="PRA-PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101386">
        <property type="entry name" value="all-alpha NTP pyrophosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0368">Histidine biosynthesis</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000190394" description="Phosphoribosyl-ATP pyrophosphatase">
        <location>
            <begin position="1"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01020"/>
        </source>
    </evidence>
    <sequence length="94" mass="10577" checksum="84369C5862AF1AAD" modified="2008-05-20" version="1">MSCEVLRKLEEVIRRRIEEKNPESYTYRLYSSGMHNVARKVGEEAVEVAVAALAEGKGRVVEEAADLLYHLLVLLNSTGLSLADVCAELEKRMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAN1</accession>
    <name>B1YAN1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidinol dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0153</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the histidinol dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349531.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAN1"/>
    <dbReference type="STRING" id="444157.Tneu_0153"/>
    <dbReference type="GeneID" id="6164809"/>
    <dbReference type="KEGG" id="tne:Tneu_0153"/>
    <dbReference type="eggNOG" id="arCOG04352">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006732_3_3_2"/>
    <dbReference type="OrthoDB" id="36308at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004399">
        <property type="term" value="F:histidinol dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:L-histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1980">
        <property type="entry name" value="Nitrogenase molybdenum iron protein domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001692">
        <property type="entry name" value="Histidinol_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012131">
        <property type="entry name" value="Hstdl_DH"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00069">
        <property type="entry name" value="hisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21256:SF2">
        <property type="entry name" value="HISTIDINE BIOSYNTHESIS TRIFUNCTIONAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21256">
        <property type="entry name" value="HISTIDINOL DEHYDROGENASE HDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00815">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00083">
        <property type="entry name" value="HOLDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="ALDH-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00611">
        <property type="entry name" value="HISOL_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="369" mass="39268" checksum="7B5D79D69CC8748D" modified="2008-05-20" version="1">MRRVLPRDVVKSVEEIVDDVAERGLQAALEYSRRLDGVAPESALLEPRPGGDPGVVAAALEVAKSLETLYSRLKPLEAVDFYGGVLRSVFWKPVRSVALYVPARYVSTLVMLAVPARAAGVEKIYVVTPPKGATGELLAVAKELGVAGVVPIGGPHGLAYSVFHMGVDMVAGPGGLYVQAAKYVLSLHAGIDGIEGPTELVVYAEGVPPEKAVAGALAQLEHGPTSFAYLVSTDAGLLEAAAEIYRRERTSSMGPLEVRKVNDVGEAVKLIDSIAPEHLEVWGAREVAYRVRNVGAVSVNMPSPYLDYAAGISHVLPTGGSAKWRGIITPATFMKPIGVAEAVGRLELLEAARRLAEYEGFRYHRQALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAR3</accession>
    <name>B1YAR3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Helix-turn-helix domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0186</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349563.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAR3"/>
    <dbReference type="STRING" id="444157.Tneu_0186"/>
    <dbReference type="GeneID" id="6164365"/>
    <dbReference type="KEGG" id="tne:Tneu_0186"/>
    <dbReference type="eggNOG" id="arCOG02944">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1192658_0_0_2"/>
    <dbReference type="OrthoDB" id="27367at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="243" mass="26752" checksum="657342107563FC02" modified="2008-05-20" version="1">MSDVPPPNRAATTSLTPSQRLVLYFMAFEVVYHGKIWFTFEDLKRGTGLATRTLRSALVALRRQGFIESYVVPGGGRRQLHRLRLEKLLPEPELEGIYLVDVAGDRLTPDAVSVLSKAEVVLHTDSVSPRRLEGIAKRVERYSGELPNARSIAVVFNSLVDWEKVAPLAPRARYICASNALDRAVGVCLTCGDVDLDLKTIRITSPNTDLGDLLANYDLVGTVTVEGCGGRKAELLVLRRRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAS5</accession>
    <name>B1YAS5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, TrmB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0198</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349575.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAS5"/>
    <dbReference type="STRING" id="444157.Tneu_0198"/>
    <dbReference type="GeneID" id="6164861"/>
    <dbReference type="KEGG" id="tne:Tneu_0198"/>
    <dbReference type="eggNOG" id="arCOG00374">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_910958_0_0_2"/>
    <dbReference type="OrthoDB" id="28494at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43704">
        <property type="entry name" value="BSR5907 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43704:SF2">
        <property type="entry name" value="HTH CRP-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13412">
        <property type="entry name" value="HTH_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="137"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="140"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="305" mass="31674" checksum="506A1FA297459BB5" modified="2008-05-20" version="1">MIWVLLLFANGTALMVFNATVTAAVFNVTLPAQPLSAPVVELDRVPVPALYDGSRVSVVTGGRGLVTIRYVPRVVDVGGLPAVNITTSDVVVVWANGSLLVAPSVKILNYTRVDKSLIIVTRGPGYIAYAIPRQVRQNNTPPAQQNGTATQQTATAAPTTQQPVTATASATPETQRQQPSTTPTSAAPSATTPSVQTTAPASTPQAVQEAGGGQLLLAAAAGVAAVAAAVAALAARRGRGDAELGDVDRRILEYVRQSGGAYEADIARDLGIPRTTVFRAVRRLAERGLVSLEKRDGRNWVAPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAS6</accession>
    <name>B1YAS6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Rhomboid family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0199</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349576.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAS6"/>
    <dbReference type="STRING" id="444157.Tneu_0199"/>
    <dbReference type="MEROPS" id="S54.027"/>
    <dbReference type="GeneID" id="6165002"/>
    <dbReference type="KEGG" id="tne:Tneu_0199"/>
    <dbReference type="eggNOG" id="arCOG01768">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055068_5_1_2"/>
    <dbReference type="OrthoDB" id="26567at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1540.10">
        <property type="entry name" value="Rhomboid-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022764">
        <property type="entry name" value="Peptidase_S54_rhomboid_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035952">
        <property type="entry name" value="Rhomboid-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050925">
        <property type="entry name" value="Rhomboid_protease_S54"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43731">
        <property type="entry name" value="RHOMBOID PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43731:SF26">
        <property type="entry name" value="RHOMBOID-LIKE PROTEIN 10, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01694">
        <property type="entry name" value="Rhomboid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144091">
        <property type="entry name" value="Rhomboid-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="92"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="129"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="156"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="200"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase S54 rhomboid" evidence="6">
        <location>
            <begin position="52"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="232" mass="26316" checksum="4DAB5B4C48F7329F" modified="2008-05-20" version="1">MALPIRDVNPTSTFPLVTKALVFVNIAVFIYELMRPEVVDQYAFVPALAWEEPYRWVTHMFLHGGLLHIVGNMIYLWVFGDNVEDHYGHGRFLALYLLWGLVAAFTHYWASAAQASMLAAAGPFGNPMYMPAVGASGAISGVLGAYMVLFPRARILTLVFFVVITLVEVPAWAYIGFWFLYQLFYGFTELVTLQVSGVAYFAHIGGFVAGAATALVYRRRRREYYWWYPTPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAV0</accession>
    <name>B1YAV0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Chorismate dehydratase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0224</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349600.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAV0"/>
    <dbReference type="STRING" id="444157.Tneu_0224"/>
    <dbReference type="GeneID" id="6164415"/>
    <dbReference type="KEGG" id="tne:Tneu_0224"/>
    <dbReference type="eggNOG" id="arCOG00655">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1122679_0_0_2"/>
    <dbReference type="OrthoDB" id="25411at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003773">
        <property type="entry name" value="Menaquinone_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030868">
        <property type="entry name" value="MqnA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37690">
        <property type="entry name" value="CHORISMATE DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37690:SF1">
        <property type="entry name" value="CHORISMATE DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02621">
        <property type="entry name" value="VitK2_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="1" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="239" mass="26094" checksum="01AF619589545047" modified="2008-05-20" version="1">MAKVVRIRYAHSDPLFWRAKLDVVEAGNLEAARLLREGAADIGFVPITMAAELGLPIVPRLAIYSTGPILSARVFKGRGAGGLCAVSETTVSARVVNRLLGASLETVEDPWAALDSCSEVLAVGDEALRMIDRGVPTLLDVGELWQTRVGTPLFFAVLVAKPGAEGLEEAVAEMENSLAHFYENPAPLVESTARRLGVSRRLVEEYFQRSRYLLNGGYIQYMVKEAEVLGLPRPRFLEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="40" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAX7</accession>
    <name>B1YAX7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1759</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351096.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAX7"/>
    <dbReference type="STRING" id="444157.Tneu_1759"/>
    <dbReference type="GeneID" id="58787353"/>
    <dbReference type="KEGG" id="tne:Tneu_1759"/>
    <dbReference type="eggNOG" id="arCOG05648">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_216669_0_0_2"/>
    <dbReference type="OrthoDB" id="27601at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="45" mass="5234" checksum="B9ABA973FBC6BDD4" modified="2008-05-20" version="1">MRGIQKRRVADLQIEPRIKEVLMKILGPEEEVYVETSGGRIRIII</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAY0</accession>
    <name>B1YAY0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Signal-transduction protein with CBS domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1762</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351099.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAY0"/>
    <dbReference type="STRING" id="444157.Tneu_1762"/>
    <dbReference type="GeneID" id="6165356"/>
    <dbReference type="KEGG" id="tne:Tneu_1762"/>
    <dbReference type="eggNOG" id="arCOG00606">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040681_12_1_2"/>
    <dbReference type="OrthoDB" id="8919at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd09836">
        <property type="entry name" value="CBS_pair_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="entry name" value="CBS-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051257">
        <property type="entry name" value="Diverse_CBS-Domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080:SF2">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="CBS-domain pair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="17"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="81"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="139" mass="15676" checksum="8E9993899E2EC96B" modified="2008-05-20" version="1">MPLIKRRELPLRVSDIMVKNVVTAKENERVREVAIRMYENKVGSVVVVDDEGRPVGIVTERDLVYVVARALAPDTPVWMVMTEDPVVINENALVTEAMEKMRQLDIRHLPVVDSAGKLVGMVSFRDIVDFMAVLMSLTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB07</accession>
    <name>B1YB07_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1789</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB07"/>
    <dbReference type="STRING" id="444157.Tneu_1789"/>
    <dbReference type="KEGG" id="tne:Tneu_1789"/>
    <dbReference type="eggNOG" id="arCOG07485">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2299447_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="91" mass="10461" checksum="C39028400B629480" modified="2008-05-20" version="1">MSMQIRLFDLDQRREVIVDIDGKAHVTELIRRLKEMGVLRQNEAAMIGVPLDEKRIAYVPAANVEQLVAYANQKKTVIAFRRYPLYGLTTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB31</accession>
    <name>B1YB31_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1814</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351150.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB31"/>
    <dbReference type="STRING" id="444157.Tneu_1814"/>
    <dbReference type="GeneID" id="6164383"/>
    <dbReference type="KEGG" id="tne:Tneu_1814"/>
    <dbReference type="eggNOG" id="arCOG00738">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_178225_0_0_2"/>
    <dbReference type="OrthoDB" id="28610at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36216:SF1">
        <property type="entry name" value="HTH ARSR-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36216">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR, TRMB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13412">
        <property type="entry name" value="HTH_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="79" mass="8941" checksum="06275C0C9BE3D567" modified="2008-05-20" version="1">MARAKSATSLSDPRRAELLKLIEENGPLTQGQIAKAMGMTWGQVQWHLYVLERDRKVRRVVKDGVTYYVSANAPVELLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB40</accession>
    <name>B1YB40_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase associated with various cellular activities AAA_5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1823</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351159.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB40"/>
    <dbReference type="STRING" id="444157.Tneu_1823"/>
    <dbReference type="GeneID" id="6164658"/>
    <dbReference type="KEGG" id="tne:Tneu_1823"/>
    <dbReference type="eggNOG" id="arCOG00434">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018678_0_0_2"/>
    <dbReference type="OrthoDB" id="9837at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045427">
        <property type="entry name" value="MoxR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050513">
        <property type="entry name" value="RavA_ATPases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32204">
        <property type="entry name" value="ATPASE RAVA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32204:SF0">
        <property type="entry name" value="ATPASE RAVA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20030">
        <property type="entry name" value="bpMoxR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="1">
        <location>
            <begin position="35"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="368" mass="41956" checksum="5E0244E2608BC46D" modified="2008-05-20" version="1">MEELVNKVAQVRKTLDSLFYKFTDEITASLTAVLTRENFILIGPPGTAKTMLVASTSKLLKARWFYRLLTKFTEVEEVIGPIDVVELLKGNVKRIYTNSIVEADFALLDEIFNASSAILNTMLTILNERVIYDGGSIIPVKTWTVFGATNRIPDEEELQALYDRFPLRVFTKYAEPDETENLIKAGLRLRRDLERLTPLMTMEEVKKLNEYVQSYVYENMDAIVRHISPIVASYLDHVVISNRTRVKVPLYVVSYLSVLGISPSDIDSATLRAATLKVLKYLVKDREDLSEYETFLTTHMPGNLSALYDMVNEIKALVANNALSIAREKIKEAYEILDKSIADPVVYRFFQVEIEEIKSTLDMLRSQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB88</accession>
    <name>B1YB88_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0266</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349640.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB88"/>
    <dbReference type="STRING" id="444157.Tneu_0266"/>
    <dbReference type="GeneID" id="6165645"/>
    <dbReference type="KEGG" id="tne:Tneu_0266"/>
    <dbReference type="eggNOG" id="arCOG00938">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_777602_0_0_2"/>
    <dbReference type="OrthoDB" id="30736at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023819">
        <property type="entry name" value="Pep-mod_rSAM_AF0577"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023867">
        <property type="entry name" value="Sulphatase_maturase_rSAM"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR04084">
        <property type="entry name" value="rSAM_AF0577"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR04085">
        <property type="entry name" value="rSAM_more_4Fe4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43273">
        <property type="entry name" value="ANAEROBIC SULFATASE-MATURATING ENZYME HOMOLOG ASLB-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43273:SF2">
        <property type="entry name" value="RADICAL SAM CORE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01067">
        <property type="entry name" value="SPASM/twitch_domain_containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01104">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="6">
        <location>
            <begin position="1"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="357" mass="40704" checksum="91DE7E0F1D8294D6" modified="2008-05-20" version="1">MLWFVLTTGACNLQCRYCGGSFDERHSPWRPKVAAGEVARFIAQRDGKPVVFFYGGEPLLNPHYVVEVMEALPNARFGIQTNGTLVRRLPPEVWRRFSTVLLSIDGPQEVTDYYRGPGVYRRVVEALRWLKDEVGCGCKTVARMAVGRRSDIYRDVTHLLGLGFDAVHWQLNVIWTDEWGPREFLRWAEESYLPGVRGLRDLFLSEAERGRALEVIPILGIYRALLVRPYDWVPCGAGRHAFAINTDGRILHCPIAVSEKWATAGHIRIGLNGAAPRLRDRCLVCEYRHVCGGRCLYTQYEDYWGEEGFDAVCQVTKRTIKILEEEAPRLRKLIDAGVLDPRRLDYDPLLDSTEVIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBA7</accession>
    <name>B1YBA7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ThiW protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0286</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBA7"/>
    <dbReference type="STRING" id="444157.Tneu_0286"/>
    <dbReference type="KEGG" id="tne:Tneu_0286"/>
    <dbReference type="eggNOG" id="arCOG04317">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100509_0_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012652">
        <property type="entry name" value="ThiW"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02359">
        <property type="entry name" value="thiW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09512">
        <property type="entry name" value="ThiW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF024534">
        <property type="entry name" value="ThiW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="124"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="159" mass="15883" checksum="4609C3BF00FC00C1" modified="2008-05-20" version="1">MGVRLAYVVVFTGLGLALAPLNIPIGPTKAFPGQHFVNGLAGLVLGPWAVAVAALISAIRLMLGLGTVFAFPGSIPGALVVGLASVVFGRRPWVVLLEPLGTLGVGLPLSIYVVAPALGLGGRFAAALIPVALGWALSTGIGTAGAYAAALALRRLGKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBD1</accession>
    <name>B1YBD1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0311</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349683.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBD1"/>
    <dbReference type="GeneID" id="6166272"/>
    <dbReference type="KEGG" id="tne:Tneu_0311"/>
    <dbReference type="eggNOG" id="arCOG06066">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_149108_4_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="91" mass="9290" checksum="C73922254849795E" modified="2008-05-20" version="1">MRLLAVGLALVFAGFTLLLLAPLLSMGWPSRVEAAGAACVVLFFVPFCFGTGPPEVLAVAVVASVALAAGAALFMWLTAREVARRGEGQGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBD2</accession>
    <name>B1YBD2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pantoate kinase</fullName>
            <shortName evidence="1">PoK</shortName>
            <ecNumber evidence="1">2.7.1.169</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0312</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Phosphorylates (R)-pantoate to form (R)-4-phosphopantoate in the CoA biosynthesis pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-pantoate + ATP = (R)-4-phosphopantoate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28246"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61294"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.169"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; coenzyme A biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GHMP kinase family. PoK subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.169" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349684.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBD2"/>
    <dbReference type="STRING" id="444157.Tneu_0312"/>
    <dbReference type="GeneID" id="6166326"/>
    <dbReference type="KEGG" id="tne:Tneu_0312"/>
    <dbReference type="eggNOG" id="arCOG04263">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081191_1_0_2"/>
    <dbReference type="OrthoDB" id="85822at2157"/>
    <dbReference type="UniPathway" id="UPA00241"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02223">
        <property type="entry name" value="Pantoate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012043">
        <property type="entry name" value="PoK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42282:SF1">
        <property type="entry name" value="PANTOATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42282">
        <property type="entry name" value="PANTOATE KINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016896">
        <property type="entry name" value="GHMP_arc_MJ0969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="255" mass="27794" checksum="24D1344644AD0487" modified="2008-05-20" version="1">MQLKIPHHVTGFWLPHYGGSPLETGSLGAGLLLDYAEVYLSGVGIRYNDKLLEAGVGVDIKSPYPLGYGYAGSAVVNIAKHIATLGLSLEAFQRAHIAEVESGTGLGDVLAIYTGGCLVVRTSPGAPGVGKAYGYDCPRLFAVTVDLRRVETAAMLRNLRWQLEIEGRRAVEAMADGDFQTFLELARRFSQAVGFLTPRLEEELRRLAGVFGFYVKKGVLVVVAERDYITDVADVVKKYGAVHVTELKWRAIYSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBG8</accession>
    <name>B1YBG8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1855</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351189.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBG8"/>
    <dbReference type="STRING" id="444157.Tneu_1855"/>
    <dbReference type="GeneID" id="6164781"/>
    <dbReference type="KEGG" id="tne:Tneu_1855"/>
    <dbReference type="eggNOG" id="arCOG07953">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_182720_0_0_2"/>
    <dbReference type="OrthoDB" id="28997at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="98" mass="10777" checksum="7A67E92C31B8B449" modified="2008-05-20" version="1">MEGGACGVLCKIAKALAEFFVNAQGSAISLYPSEVAAKSGVPQQIVGEVFRALASRGYMECVRYSYRKVRCTVSRNSPLWTADPRSIYQILEDLKQNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBH3</accession>
    <name>B1YBH3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1860</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351194.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBH3"/>
    <dbReference type="STRING" id="444157.Tneu_1860"/>
    <dbReference type="GeneID" id="6164839"/>
    <dbReference type="KEGG" id="tne:Tneu_1860"/>
    <dbReference type="eggNOG" id="arCOG01773">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037990_14_1_2"/>
    <dbReference type="OrthoDB" id="1018at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase type 11" evidence="1">
        <location>
            <begin position="38"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="203" mass="22140" checksum="E6F5EDF79207ED66" modified="2008-05-20" version="1">MEVFRSRAVDYDRWYAAHPALYRSELDAVSRFDCRGGVEVGVGTGRFAAPLGVRVGVDPVREMLKLAPGALELVEAVGEALPLRDKSLPCALLVVTLCFVDNPRAVLREAARVAERVVACIVPRESPWGRLYVEMGAAGHPFYSRARFYTLGEVVEMAGGLRPARVVATLLRPPGGPETEEEAREVSLAEAERAGFACVEFRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBI7</accession>
    <name>B1YBI7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1874</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351208.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBI7"/>
    <dbReference type="STRING" id="444157.Tneu_1874"/>
    <dbReference type="GeneID" id="6165036"/>
    <dbReference type="KEGG" id="tne:Tneu_1874"/>
    <dbReference type="eggNOG" id="arCOG07037">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_423140_0_0_2"/>
    <dbReference type="OrthoDB" id="28260at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="640" mass="68674" checksum="43EA0734E10EAEEC" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBN7</accession>
    <name>B1YBN7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1924</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351258.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBN7"/>
    <dbReference type="STRING" id="444157.Tneu_1924"/>
    <dbReference type="GeneID" id="6164867"/>
    <dbReference type="KEGG" id="tne:Tneu_1924"/>
    <dbReference type="eggNOG" id="arCOG07061">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_812858_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="313"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="341" mass="38358" checksum="038A2ACF6627C01E" modified="2008-05-20" version="1">MRVAGAVVPLVILAALAAAAPFYIKVIDVSNRDPSYIPYDDIYTVNGCRFYIIVDKEGKMGVYELGRTPVVFDNSTGYGDAYQKYIKGTKQIEQYLRDRESFLKKLEELGAVEPKKISVDIEEINKTGRDAERSSRANSSIWQPAVEYEMRRGPVYAYIVADDPYDGVTITVSAPYAHVDEVWRFLGELPRAEFPVDVLVILYGEKRVTEEQVEVYRRAVIELEKELGTVREFRDFYGRVVAVEGLIHMPYDGYSLGFIIPIPDEHSFNISTARRIVTRLVQLAGMCHNNTVVKFVPRNMTGMTLLIPPTPPVAYAAAVAAGVVVTASALFILRRMRGRTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBR9</accession>
    <name>B1YBR9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Molybdopterin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_0353</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349723.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBR9"/>
    <dbReference type="STRING" id="444157.Tneu_0353"/>
    <dbReference type="GeneID" id="6166118"/>
    <dbReference type="KEGG" id="tne:Tneu_0353"/>
    <dbReference type="eggNOG" id="arCOG01495">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000422_13_3_2"/>
    <dbReference type="OrthoDB" id="23466at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02775">
        <property type="entry name" value="MopB_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.740">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.25.90">
        <property type="entry name" value="ADC-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.228.10">
        <property type="entry name" value="Dimethylsulfoxide Reductase, domain 2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2070.10">
        <property type="entry name" value="Formate dehydrogenase/DMSO reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050612">
        <property type="entry name" value="Prok_Mopterin_Oxidored"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43742:SF9">
        <property type="entry name" value="TETRATHIONATE REDUCTASE SUBUNIT A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43742">
        <property type="entry name" value="TRIMETHYLAMINE-N-OXIDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="ADC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53706">
        <property type="entry name" value="Formate dehydrogenase/DMSO reductase, domains 1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="9">
        <location>
            <begin position="40"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="805" mass="89191" checksum="8EB024AF124B1213" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="91" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBS9</accession>
    <name>B1YBS9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Phosphate transport system permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_0363</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cell membrane</location>
            <topology evidence="1 9">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349733.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBS9"/>
    <dbReference type="STRING" id="444157.Tneu_0363"/>
    <dbReference type="GeneID" id="6164932"/>
    <dbReference type="KEGG" id="tne:Tneu_0363"/>
    <dbReference type="eggNOG" id="arCOG00167">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033621_1_3_2"/>
    <dbReference type="OrthoDB" id="338493at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011864">
        <property type="entry name" value="Phosphate_PstC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051124">
        <property type="entry name" value="Phosphate_Transport_Permease"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02138">
        <property type="entry name" value="phosphate_pstC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30425">
        <property type="entry name" value="PHOSPHATE TRANSPORT SYSTEM PERMEASE PROTEIN PST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30425:SF1">
        <property type="entry name" value="PHOSPHATE TRANSPORT SYSTEM PERMEASE PROTEIN PSTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="32"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="75"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="118"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="204"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="266"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="10">
        <location>
            <begin position="81"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="292" mass="30235" checksum="B0B044067AF4E89E" modified="2008-05-20" version="1">MTAEALILLFFLYAASALFLFFTRLRAGLRLLALAVPAVVAAMVAVFLAGALPALSREGLSLFTSSLWSSSDERYGLLGALWGTFITTAVALPLAAAMAVSFAVFVNDIAPAGLRRGLSAFMDLTAAVPTVVYGLWGAAFLTKFIPPSLLAASLLLAAIITPYAAAVIREGYASVPREIAEAVYSLGATKFEAALVKLRYIRNYVLGGVFLALGRAVGETVAVSMVVGGNPSSGVTLNLLSSGVTVSSLIALQMPYADATAYMKPALMAAALLLAAAGLAINAAAVYLLFKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBT9</accession>
    <name>B1YBT9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Periplasmic binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0373</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349743.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBT9"/>
    <dbReference type="STRING" id="444157.Tneu_0373"/>
    <dbReference type="GeneID" id="6165268"/>
    <dbReference type="KEGG" id="tne:Tneu_0373"/>
    <dbReference type="eggNOG" id="arCOG04233">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_403165_0_0_2"/>
    <dbReference type="OrthoDB" id="24039at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071281">
        <property type="term" value="P:cellular response to iron ion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1980">
        <property type="entry name" value="Nitrogenase molybdenum iron protein domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050902">
        <property type="entry name" value="ABC_Transporter_SBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30535:SF34">
        <property type="entry name" value="MOLYBDATE-BINDING PROTEIN MOLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30535">
        <property type="entry name" value="VITAMIN B12-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53807">
        <property type="entry name" value="Helical backbone' metal receptor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="1">
        <location>
            <begin position="62"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="1">
        <location>
            <begin position="404"/>
            <end position="693"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="723" mass="80635" checksum="397EC18ECCD3FC77" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBV3</accession>
    <name>B1YBV3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0389</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349757.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBV3"/>
    <dbReference type="STRING" id="444157.Tneu_0389"/>
    <dbReference type="GeneID" id="6164895"/>
    <dbReference type="KEGG" id="tne:Tneu_0389"/>
    <dbReference type="eggNOG" id="arCOG01007">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013016_0_0_2"/>
    <dbReference type="OrthoDB" id="57034at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033214">
        <property type="term" value="P:siderophore-iron import into cell"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="entry name" value="ABC transporter involved in vitamin B12 uptake, BtuC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472:SF25">
        <property type="entry name" value="ABC TRANSPORTER PERMEASE PROTEIN MJ0876-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="ABC transporter involved in vitamin B12 uptake, BtuC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="85"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="120"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="148"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="194"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="244"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="309"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="338" mass="34511" checksum="24C80D915A002F3B" modified="2008-05-20" version="1">MRVLASYLLLVGVLAALFLYSLSVGAYSYGPLDVLKAALWGSGPEALVAKMRLARAVASVAVGAALAVAGAALQAVLRNPLASPFTLGIPQAAALGVAVAVMVAGAGTVTRGLLDISNPYLVVGLAFLSALLNGLLVLFLASLTGFSVASVVLAMVVVSSVYQAALALLQYLYLNDIQTAAVVFWTFGDVGRPGYWESFMLLAVAAASALYFLANSAGYNLVAVGEEVAKTSGVDPARLRLTTLVAVTLVVAVLVSFTGVIGFVGLAAPHIARLLVGGSHTRLIPASAAAGAALVLGADVVGRLAKPPVIIPVGITLSFVGAAFILALLFRLRRYGEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBX2</accession>
    <name>B1YBX2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Hydrogenase maturation protease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0408</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase A31 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349776.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBX2"/>
    <dbReference type="STRING" id="444157.Tneu_0408"/>
    <dbReference type="GeneID" id="6166215"/>
    <dbReference type="KEGG" id="tne:Tneu_0408"/>
    <dbReference type="eggNOG" id="arCOG04429">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_128027_0_0_2"/>
    <dbReference type="OrthoDB" id="44145at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008047">
        <property type="term" value="F:enzyme activator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016485">
        <property type="term" value="P:protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd06070">
        <property type="entry name" value="H2MP_like-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1450">
        <property type="entry name" value="HybD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023430">
        <property type="entry name" value="Pept_HybD-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000671">
        <property type="entry name" value="Peptidase_A31"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00072">
        <property type="entry name" value="hydrog_prot"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30302">
        <property type="entry name" value="HYDROGENASE 1 MATURATION PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30302:SF1">
        <property type="entry name" value="HYDROGENASE 2 MATURATION PROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01750">
        <property type="entry name" value="HycI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53163">
        <property type="entry name" value="HybD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="171" mass="18502" checksum="F87E7ABBE124D4B2" modified="2008-05-20" version="1">MLLVVGLGNVVYGDDGFGSCLAQALSQYNDFVFDGNAHGIGVLGTLADYDVLVFLDIDVRLPPGAVAVERIEGSLTLRETRLVDAHRAPPSLLVGYLRAMGRDPKAYLIAVGPKTLDPLSPPSQEVIKAVSTAVEELRKLLGQFGVDLKVGGDVVEEFKNCYRRALKYERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBX6</accession>
    <name>B1YBX6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Hydrogenase maturation factor HypA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">hypA</name>
        <name evidence="5" type="ordered locus">Tneu_0412</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the HypA/HybF family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349780.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBX6"/>
    <dbReference type="STRING" id="444157.Tneu_0412"/>
    <dbReference type="GeneID" id="6166146"/>
    <dbReference type="KEGG" id="tne:Tneu_0412"/>
    <dbReference type="eggNOG" id="arCOG04426">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_126929_2_0_2"/>
    <dbReference type="OrthoDB" id="36835at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051604">
        <property type="term" value="P:protein maturation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2320.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00213">
        <property type="entry name" value="HypA_HybF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000688">
        <property type="entry name" value="HypA/HybF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34535">
        <property type="entry name" value="HYDROGENASE MATURATION FACTOR HYPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34535:SF3">
        <property type="entry name" value="HYDROGENASE MATURATION FACTOR HYPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01155">
        <property type="entry name" value="HypA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004761">
        <property type="entry name" value="Hydrgn_mat_HypA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 4" id="KW-0533">Nickel</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="4">
        <location>
            <position position="2"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="136" mass="15491" checksum="DB59A9AA5847BB19" modified="2008-05-20" version="1">MHEWSLALSVVQTVDRWAREHNAEVKRVVLSVPVVSQLDLSILREAFDMLKMDSRLEKATLDVKVRSPRYRCRACGYVFGHEEVSSQIEALVGKYGEEYPLHLVPELLPAFVKCPRCGSHDIEADLAIQVEEIETI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBX9</accession>
    <name>B1YBX9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Signal-transduction protein with CBS domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0415</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBX9"/>
    <dbReference type="STRING" id="444157.Tneu_0415"/>
    <dbReference type="KEGG" id="tne:Tneu_0415"/>
    <dbReference type="eggNOG" id="arCOG00631">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040681_12_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd09836">
        <property type="entry name" value="CBS_pair_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="entry name" value="CBS-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051257">
        <property type="entry name" value="Diverse_CBS-Domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080:SF2">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="CBS-domain pair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="10"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="76"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="145" mass="15420" checksum="3EE2EF6690B3E9A9" modified="2008-05-20" version="1">MFPMKAGDIARKPPVTVAQTASIREAAKLMAEARVGLVVVVDPGDPGRILGVVSERDVIRAVASGLDLSRPVRDVMSSPVVAVDAEEPVQNAARAMRNHNVRHVVVTRGGRLYGVISIRDLIAEQDVLKSLVEAAEPVENLPAAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBY3</accession>
    <name>B1YBY3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Alcohol dehydrogenase zinc-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0419</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349787.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBY3"/>
    <dbReference type="STRING" id="444157.Tneu_0419"/>
    <dbReference type="GeneID" id="6166103"/>
    <dbReference type="KEGG" id="tne:Tneu_0419"/>
    <dbReference type="eggNOG" id="arCOG01456">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026673_14_1_2"/>
    <dbReference type="OrthoDB" id="73567at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.180.10">
        <property type="entry name" value="Medium-chain alcohol dehydrogenases, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43350:SF2">
        <property type="entry name" value="GROES-LIKE ZINC-BINDING ALCOHOL DEHYDROGENASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43350">
        <property type="entry name" value="NAD-DEPENDENT ALCOHOL DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="GroES-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Enoyl reductase (ER)" evidence="7">
        <location>
            <begin position="11"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="362" mass="37942" checksum="6DDD6A7FD9981DC9" modified="2008-05-20" version="1">MKAAVLNQYNKPLEVEDLDVERPREGEALVRIKTAGVCHSDLYVLEGATPVPTPVVPGHEAVGVVEEVGPGVKSLQPGDWVVTSFVWPCGRCRNCVRGRENLCETFAQVRLKGTLLDGTTRLRKRSGEEVRAFLGGTWAEASVVPATAVAKLPEGLRGRQELAMLGCAFLTAYGAVVNSGSVSPGDTVVVVGTGGVGLSAVQVAKAVGARVIAVGRNPDKLKVAAELGAEVVNTREGDPVKAVRDLTEGRGADVVVEAVGNDDTIQMAVDMAALGGRVVLVGLMPVGHKTPLGLARVVRGGIQIVGSYGARPRVDLPAVVDMVKRGLLKPEKLAGPTYRLEEINQAVEALRSGKAIRPLVVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBZ9</accession>
    <name>B1YBZ9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0435</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349803.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBZ9"/>
    <dbReference type="STRING" id="444157.Tneu_0435"/>
    <dbReference type="GeneID" id="6166048"/>
    <dbReference type="KEGG" id="tne:Tneu_0435"/>
    <dbReference type="eggNOG" id="arCOG07005">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2893393_0_0_2"/>
    <dbReference type="OrthoDB" id="23870at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="62" mass="7330" checksum="E2023338D46EA71C" modified="2008-05-20" version="1">MARRFPPQVAEERLEKIVAMAARAGRNVLWLSRDAFTLRSWEPHVRFRARYVDGAYVLEEQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC20</accession>
    <name>B1YC20_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Vacuolar H+transporting two-sector ATPase F subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1959</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the V-ATPase F subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351293.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC20"/>
    <dbReference type="STRING" id="444157.Tneu_1959"/>
    <dbReference type="GeneID" id="6164500"/>
    <dbReference type="KEGG" id="tne:Tneu_1959"/>
    <dbReference type="eggNOG" id="arCOG04102">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_135754_3_1_2"/>
    <dbReference type="OrthoDB" id="24971at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10580">
        <property type="entry name" value="ATPase, V1 complex, subunit F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008218">
        <property type="entry name" value="ATPase_V1-cplx_f_g_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036906">
        <property type="entry name" value="ATPase_V1_fsu_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01990">
        <property type="entry name" value="ATP-synt_F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159468">
        <property type="entry name" value="AtpF-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="96" mass="11035" checksum="48D1142AF72EBC76" modified="2008-05-20" version="1">MHIVIGDRSTVALFKLMGFEGRTIEDAEEALRFVTTHLDMYDVIFITSKIAKAIKKDLDELRMRNPRKLLVEVPSVDEGMEREVNYLQIVRQILGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC68</accession>
    <name>B1YC68_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Replication factor C small subunit</fullName>
            <shortName evidence="7">RFC small subunit</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6 7">Clamp loader small subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rfcS</name>
        <name evidence="9" type="ordered locus">Tneu_2008</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Heteromultimer composed of small subunits (RfcS) and large subunits (RfcL).</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the activator 1 small subunits family. RfcS subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351341.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC68"/>
    <dbReference type="STRING" id="444157.Tneu_2008"/>
    <dbReference type="GeneID" id="6165616"/>
    <dbReference type="KEGG" id="tne:Tneu_2008"/>
    <dbReference type="eggNOG" id="arCOG00469">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042324_2_1_2"/>
    <dbReference type="OrthoDB" id="7928at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005663">
        <property type="term" value="C:DNA replication factor C complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003689">
        <property type="term" value="F:DNA clamp loader activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18140">
        <property type="entry name" value="HLD_clamp_RFC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.272.10:FF:000029">
        <property type="entry name" value="Replication factor C small subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000129">
        <property type="entry name" value="Replication factor C subunit 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.272.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01509">
        <property type="entry name" value="RfcS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008921">
        <property type="entry name" value="DNA_pol3_clamp-load_cplx_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050238">
        <property type="entry name" value="DNA_Rep/Repair_Clamp_Loader"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023748">
        <property type="entry name" value="Rep_factor-C_ssu_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013748">
        <property type="entry name" value="Rep_factorC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047854">
        <property type="entry name" value="RFC_lid"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001679">
        <property type="entry name" value="PRK00440.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11669">
        <property type="entry name" value="REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11669:SF20">
        <property type="entry name" value="REPLICATION FACTOR C SUBUNIT 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25361">
        <property type="entry name" value="AAA_lid_RFC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08542">
        <property type="entry name" value="Rep_fac_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48019">
        <property type="entry name" value="post-AAA+ oligomerization domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0235">DNA replication</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="8">
        <location>
            <begin position="36"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="44"/>
            <end position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00031749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01509"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="328" mass="37112" checksum="D20E549325682606" modified="2008-05-20" version="1">MAELFWFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPIKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKYIAKREGIEVGEDALDLIYELSEGDMRKAINLLQVAAATNKVVDANAVAAAAAAVKPSDILELFNLALGGDYLKAREKLRELMYIKGVAGVDFIRAFQRELIRMPLDDDLKAEIAELLADVDYRLTQGADEEIQMAYLLAKLGSIGKRAKPGAAPTKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC78</accession>
    <name>B1YC78_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CRISPR-associated protein, MJ1666 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0443</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC78"/>
    <dbReference type="KEGG" id="tne:Tneu_0443"/>
    <dbReference type="eggNOG" id="arCOG03433">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_558550_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10640">
        <property type="entry name" value="SSO1389-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053857">
        <property type="entry name" value="Csx1_CARF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22230">
        <property type="entry name" value="Csx1_CARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160980">
        <property type="entry name" value="SSO1389-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRISPR system endoribonuclease Csx1 CARF" evidence="1">
        <location>
            <begin position="28"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="484" mass="52346" checksum="47A63FCFB6E0365C" modified="2008-05-20" version="1">MLAGGSAALSAAAVTVIRRGVYCGVRVLLVSVWGHPPGWRKARFVAEGVGGRAFRGRAHAGVGCLPAQVLATYLAKSGLEVATLVVGFDSAVDPGGGDLRRRAVEQYLMWAEEVELQAEVVAAAGVGVHHGWRFEGTPEAVFSDVFKAVWERSEGVFQIYLDLTHAPPHLAAPVYYAAAAAAAGRGAEDKLVVVSAEAAEVEGEPCLQEAPRPPVEGTPVLRLLDSSELQSVVQRVREAASLRWLSAPGRARCSRLGRLVWLLSNGLGPLVYPGAVFEGWEPSFGPPEGPPKLEESRPVVEGRAVRYQHMRPDAAVDAALYQVWRELGHLFPGGAPLVDFLTAAAGELERRGAPRAAEALRDAAREAAQLEKTFTAVNGPDSAIWPEVWHAAERLGPPADPREYVGELAEALPQARRELEEERRRVAERGPDPRLVRDFLTRGGLAPLFIRRIDLRGGRIVKVVYDGRTVERLLKHLEQKAPPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC88</accession>
    <name>B1YC88_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glutaredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0454</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349821.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC88"/>
    <dbReference type="STRING" id="444157.Tneu_0454"/>
    <dbReference type="GeneID" id="6165928"/>
    <dbReference type="KEGG" id="tne:Tneu_0454"/>
    <dbReference type="eggNOG" id="arCOG07017">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2140298_0_0_2"/>
    <dbReference type="OrthoDB" id="28349at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="100" mass="10835" checksum="73704B0E027D6672" modified="2008-05-20" version="1">MPLKVVVVAVFGGRAGPCRSCVYAAGAAGVDATVEMPGDDLSWLPRLLKRLGAPAEVHLVHALSLRGLYFMVRYRTGKLPLVLVDGRRIEPGELRRLLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCC5</accession>
    <name>B1YCC5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NAD-dependent epimerase/dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0491</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349858.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCC5"/>
    <dbReference type="STRING" id="444157.Tneu_0491"/>
    <dbReference type="GeneID" id="6165913"/>
    <dbReference type="KEGG" id="tne:Tneu_0491"/>
    <dbReference type="eggNOG" id="arCOG01373">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007383_1_7_2"/>
    <dbReference type="OrthoDB" id="4907at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008446">
        <property type="term" value="F:GDP-mannose 4,6-dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042351">
        <property type="term" value="P:'de novo' GDP-L-fucose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd05260">
        <property type="entry name" value="GDP_MD_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.25.10">
        <property type="entry name" value="UDP-galactose 4-epimerase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006368">
        <property type="entry name" value="GDP_Man_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43715:SF1">
        <property type="entry name" value="GDP-MANNOSE 4,6 DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43715">
        <property type="entry name" value="GDP-MANNOSE 4,6-DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD-dependent epimerase/dehydratase" evidence="2">
        <location>
            <begin position="8"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="411" mass="45859" checksum="D40A12709461B11F" modified="2008-05-20" version="1">MTWQGKRVLITGVGGFAGSYLAKALIDAGAEVYGLVKRRADGTLPKNLVDRGVAGGVKLIEGDLRDITSLAMAIDRAQPDVIFHLAAQSFVPRSFTHPLETLEINTIGTANLLEAVRMRDKTNPVIVFAGSSEEYGLVISSERQYKRALEKYGAVYPPPAKIPELPIAETNPLRPMSPYAASKVHGDYLMRTYHAVYGLRTIVSRAFNHEGAGRGIMFVTAQVACQVMKLKMGETDRIKIGNVNAFRDWSHVEDIVAGYMLLAERGTPGEVYNQGSMRTNSVLTYILIALEEAGWKVRRIEALAGGKKVDDPTQPDESPAFGIRFWKTKVDRLMLDEQLEYEPQDKGIAVETDRGRITVEFDQARFRPAEVPILLADTRKIQDLGFRTTKTLRDIARDQLNYYLKQENRHC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCC7</accession>
    <name>B1YCC7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0493</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349860.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCC7"/>
    <dbReference type="GeneID" id="6165965"/>
    <dbReference type="KEGG" id="tne:Tneu_0493"/>
    <dbReference type="eggNOG" id="arCOG05483">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1412418_0_0_2"/>
    <dbReference type="OrthoDB" id="375127at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="192" mass="20709" checksum="541F9B386401B3BC" modified="2008-05-20" version="1">MGGHEVAVGGLGLVEKMVLYVVHRLGGASLEEINAAVAYAVLVDGGEFRPVEDRALLKSLVITGAGWIIRGVKKRLRLLSSLGLVALEGRYVRPRAAVEGLEADLAGVLDRLNGALEVLRAGGVGRLVEALDELTGTAIAKYSFVGWSAARYMKALRVLDEIAKEYGDRFASVPTSHEFEKLRRRIKEPSIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCE2</accession>
    <name>B1YCE2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0512</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCE2"/>
    <dbReference type="STRING" id="444157.Tneu_0512"/>
    <dbReference type="CAZy" id="GT2">
        <property type="family name" value="Glycosyltransferase Family 2"/>
    </dbReference>
    <dbReference type="KEGG" id="tne:Tneu_0512"/>
    <dbReference type="eggNOG" id="arCOG01397">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_846269_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016758">
        <property type="term" value="F:hexosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd00761">
        <property type="entry name" value="Glyco_tranf_GTA_type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22916">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22916:SF3">
        <property type="entry name" value="UDP-GLCNAC:BETAGAL BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="1">
        <location>
            <begin position="9"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="332" mass="36945" checksum="F4C1830137A6581C" modified="2008-05-20" version="1">MGVKIKIAVVVRAYRRYSYLPQAVESALRQTRRPDAVVVVADDVDKLRGYPVYALETKTDKLGEAVAAGIKAAEGDVVAFLEDDDLFHPEKLQTVERIFTRRRPAALHHMQHYIDEGGNPADQHPAARSYAAGQPPAEVEVGRENIFTLVERYPLLHHNLSSWAAHRDLLQEVIHVLSRLEIMLDFSLLALAAAYGTALHIPNKLTYYRVGGGASHMQGVGDLPKVVCTRNKDAIDAETLLHAVKDKNVRKAVLRNYVDHAKYVYIYNALYKCDKAYKVSTAKLLARLIVAKATKAHPVSWRTIAGIAIAPIVGRRRLAERSLRKMYGAAPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCJ1</accession>
    <name>B1YCJ1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0562</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCJ1"/>
    <dbReference type="STRING" id="444157.Tneu_0562"/>
    <dbReference type="KEGG" id="tne:Tneu_0562"/>
    <dbReference type="eggNOG" id="arCOG02665">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081189_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="289" mass="30601" checksum="3201AB131DF173AB" modified="2008-05-20" version="1">MAARFKPLGPLHLGAKQVAGVEDIGGDLVAHLPTPSTALGALAYIYREAGAAGGGTDALQILGCRAVWGPLVEIGGRRYFYAEGRLYRVEQLGEYLSCAKGEGQSPRAEGGVRAYEKPGVRLGPEKAVENLYHALFTYINGASPGEVAFLYYIDCERAKPIKTVARLGGEGRAALVEVDQDPGGPKQCSEGVLLSPLLFYSEGPTAEVGGAKGLEEVEEVYGVCGEKGPKVKSTYVGLGYNMAEGRRRAVYQALPPGTALKLKTAATNVGLHKERGYGSVLCKDQKNKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCL1</accession>
    <name>B1YCL1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0584</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349944.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCL1"/>
    <dbReference type="GeneID" id="6165590"/>
    <dbReference type="KEGG" id="tne:Tneu_0584"/>
    <dbReference type="eggNOG" id="arCOG05535">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_168026_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="85" mass="8784" checksum="060A5E62AFA0E2A7" modified="2008-05-20" version="1">MACGEAEVVNTLRVRLGCSGGRPIDLGFARVVPDLVCGGVPVEVECLSTFYCGVGQALAYLYGVGRAALVLVADGPRPGLGDFLR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCL7</accession>
    <name>NADM_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nicotinamide-nucleotide adenylyltransferase</fullName>
            <ecNumber evidence="1">2.7.7.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">NAD(+) diphosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">NAD(+) pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">NMN adenylyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_0591</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>beta-nicotinamide D-ribonucleotide + ATP + H(+) = diphosphate + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:21360"/>
            <dbReference type="ChEBI" id="CHEBI:14649"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="EC" id="2.7.7.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from nicotinamide D-ribonucleotide: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the archaeal NMN adenylyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.1" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349950.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCL7"/>
    <dbReference type="SMR" id="B1YCL7"/>
    <dbReference type="STRING" id="444157.Tneu_0591"/>
    <dbReference type="GeneID" id="6165599"/>
    <dbReference type="KEGG" id="tne:Tneu_0591"/>
    <dbReference type="eggNOG" id="arCOG00972">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108783_0_0_2"/>
    <dbReference type="OrthoDB" id="264480at2157"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00600"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000309">
        <property type="term" value="F:nicotinamide-nucleotide adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD+ biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02166">
        <property type="entry name" value="NMNAT_Archaea"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00243">
        <property type="entry name" value="NMN_adenylyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006418">
        <property type="entry name" value="NMN_Atrans_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01527">
        <property type="entry name" value="arch_NMN_Atrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002243">
        <property type="entry name" value="PRK01153.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21342:SF0">
        <property type="entry name" value="BIFUNCTIONAL NMN ADENYLYLTRANSFERASE_NUDIX HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21342">
        <property type="entry name" value="PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0520">NAD</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000100757" description="Nicotinamide-nucleotide adenylyltransferase">
        <location>
            <begin position="1"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00243"/>
        </source>
    </evidence>
    <sequence length="178" mass="20479" checksum="7597756023664B0E" modified="2008-05-20" version="1">MKRALFPGRFQPPHWGHVYAIREVLKEVDELVVAVGSAQFNYIAKDPFTAGERIWMLREALREAGVDLSRVCTIPIPNVENNLEWLGRVKSYAPPFQVVYTGNPYVALLFREAGYEVRQQPMYQRERYSSTRVRELLMRGDPQWEELVPRSVAEIIKAIGGAERLRIAAAGEAEPHRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCN3</accession>
    <name>B1YCN3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Flavin prenyltransferase UbiX</fullName>
            <ecNumber evidence="6">2.5.1.129</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ubiX</name>
        <name evidence="8" type="ordered locus">Tneu_0607</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>dimethylallyl phosphate + FMNH2 = prenylated FMNH2 + phosphate</text>
            <dbReference type="Rhea" id="RHEA:37743"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
            <dbReference type="ChEBI" id="CHEBI:87467"/>
            <dbReference type="ChEBI" id="CHEBI:88052"/>
            <dbReference type="EC" id="2.5.1.129"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the UbiX/PAD1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.129" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCN3"/>
    <dbReference type="STRING" id="444157.Tneu_0607"/>
    <dbReference type="KEGG" id="tne:Tneu_0607"/>
    <dbReference type="eggNOG" id="arCOG01703">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074522_0_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106141">
        <property type="term" value="F:flavin prenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1950:FF:000001">
        <property type="entry name" value="Flavin prenyltransferase UbiX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1950">
        <property type="entry name" value="Flavin prenyltransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01984">
        <property type="entry name" value="ubiX_pad"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036551">
        <property type="entry name" value="Flavin_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003382">
        <property type="entry name" value="Flavoprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004507">
        <property type="entry name" value="UbiX-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004685">
        <property type="entry name" value="PRK06029.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00421">
        <property type="entry name" value="ubiX_pad"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43374">
        <property type="entry name" value="FLAVIN PRENYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43374:SF1">
        <property type="entry name" value="FLAVIN PRENYLTRANSFERASE PAD1, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02441">
        <property type="entry name" value="Flavoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52507">
        <property type="entry name" value="Homo-oligomeric flavin-containing Cys decarboxylases, HFCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 6" id="KW-0288">FMN</keyword>
    <keyword evidence="1 6" id="KW-0637">Prenyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Flavoprotein" evidence="7">
        <location>
            <begin position="2"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="10"/>
            <end position="12"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="87"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>dimethylallyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:88052"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>dimethylallyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:88052"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00060793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="189" mass="20397" checksum="96D8F5F3CB488D97" modified="2008-05-20" version="1">MMKVFVGITGASGVIYGVKVLELLRRAGVEIHLSITKTAERVLRLETDYDPAYVKSLAHHFWDEGDMAAPPASGSFGIDAVAVVPCSTKTLAAIANGFTTNLITRAAEVGLKERRRVVLVVRESPLSLVHIRNMELATLAGAIVMPAAPGFYTRPRDIDELVTTFAGRVLDALGIKHSFTPRWGGQARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCN9</accession>
    <name>B1YCN9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF1922 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0613</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349972.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCN9"/>
    <dbReference type="STRING" id="444157.Tneu_0613"/>
    <dbReference type="GeneID" id="6165490"/>
    <dbReference type="KEGG" id="tne:Tneu_0613"/>
    <dbReference type="eggNOG" id="arCOG05509">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_200173_0_0_2"/>
    <dbReference type="OrthoDB" id="25930at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.820.10">
        <property type="entry name" value="Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="69" mass="7724" checksum="3DC011321E589F77" modified="2008-05-20" version="1">MRYAAVVCPRCARASAARADARRHQCPYCGTVFQIDQAAVIAVGSAREVREAVVRYNSNFLKPGWEPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCQ1</accession>
    <name>B1YCQ1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Presenilin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0625</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349984.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCQ1"/>
    <dbReference type="STRING" id="444157.Tneu_0625"/>
    <dbReference type="GeneID" id="6166306"/>
    <dbReference type="KEGG" id="tne:Tneu_0625"/>
    <dbReference type="eggNOG" id="arCOG04463">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_975287_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="136"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="159"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="214"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="242"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="273"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="292" mass="31041" checksum="48172B48817226BB" modified="2008-05-20" version="1">MEQRQVLVAVAVVVAATLLAVAPLLLAGEAGPPPVASTPYVRAEDAAATVYNLAVFFGLLVGATVLIYVIFSRRRLMSLFVSLTWFLLSVGVVQFYAVLYYWSGLIGDTAALLLLWLSFPFGVAVLYMVKKRRGDVVLGFLSSLAGAMFAWLLPEATVAALLAALPIYDYFMVSRGLLGKLIKRSREAATPGSKGGGASADSPLFGFVVRMKSLSLGTGDFVVYAAALTFIAARIIHQSRLAALLSVGVGAALIYLGLRLTVAVFVKRWGYGPALPIPMLLLSPLLALALLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCT2</accession>
    <name>B1YCT2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH-ubiquinone/plastoquinone oxidoreductase, chain 6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0656</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCT2"/>
    <dbReference type="STRING" id="444157.Tneu_0656"/>
    <dbReference type="KEGG" id="tne:Tneu_0656"/>
    <dbReference type="eggNOG" id="arCOG05520">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_151097_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1200">
        <property type="entry name" value="NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042106">
        <property type="entry name" value="Nuo/plastoQ_OxRdtase_6_NuoJ"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="148" mass="15368" checksum="80298E9381639E8E" modified="2008-05-20" version="1">MLLQTGDMLGDLLLLAALLFGIVAVFSRDNVYSASSLAVSAGAVGAYYAYLGQFAPALLIFVIYIGAVMLLVIVTAAMYGGVHRWGARRIAASTVLLAATALAALFLQMGHREAVGVLQGVNLAEVAVLLFSVAALSLIVGVEIARRS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCT7</accession>
    <name>GCH1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GTP cyclohydrolase 1</fullName>
            <ecNumber evidence="1">3.5.4.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">GTP cyclohydrolase I</fullName>
            <shortName evidence="1">GTP-CH-I</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">folE</name>
        <name type="ordered locus">Tneu_0661</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>GTP + H2O = 7,8-dihydroneopterin 3'-triphosphate + formate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17473"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58462"/>
            <dbReference type="EC" id="3.5.4.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; 7,8-dihydroneopterin triphosphate biosynthesis; 7,8-dihydroneopterin triphosphate from GTP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GTP cyclohydrolase I family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.16" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350020.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCT7"/>
    <dbReference type="SMR" id="B1YCT7"/>
    <dbReference type="STRING" id="444157.Tneu_0661"/>
    <dbReference type="GeneID" id="6165221"/>
    <dbReference type="KEGG" id="tne:Tneu_0661"/>
    <dbReference type="eggNOG" id="arCOG04542">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049768_3_3_2"/>
    <dbReference type="OrthoDB" id="8438at2157"/>
    <dbReference type="UniPathway" id="UPA00848">
        <property type="reaction ID" value="UER00151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003934">
        <property type="term" value="F:GTP cyclohydrolase I activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006729">
        <property type="term" value="P:tetrahydrobiopterin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.286.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00223">
        <property type="entry name" value="FolE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043133">
        <property type="entry name" value="GTP-CH-I_C/QueF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043134">
        <property type="entry name" value="GTP-CH-I_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001474">
        <property type="entry name" value="GTP_CycHdrlase_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020602">
        <property type="entry name" value="GTP_CycHdrlase_I_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006826">
        <property type="entry name" value="PRK09347.1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11109:SF7">
        <property type="entry name" value="GTP CYCLOHYDROLASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11109">
        <property type="entry name" value="GTP CYCLOHYDROLASE I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01227">
        <property type="entry name" value="GTP_cyclohydroI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55620">
        <property type="entry name" value="Tetrahydrobiopterin biosynthesis enzymes-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00859">
        <property type="entry name" value="GTP_CYCLOHYDROL_1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0342">GTP-binding</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0554">One-carbon metabolism</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000100205" description="GTP cyclohydrolase 1">
        <location>
            <begin position="1"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00223"/>
        </source>
    </evidence>
    <sequence length="187" mass="20951" checksum="90F0F53E4A60AEE2" modified="2008-05-20" version="1">MVLEKRGVVKPEEGVRALLEHLGEDVTRPGVVDTPKRFVKALGELTRGLREPPPEVVFFPLEYDAEPGPVVIENISAVSLCEHHLLPILLSVSVAYIPGDGVPGLSKVIRLVKWAAARPIMQERFTEWLADLLMEKLRARAVAVEVCGVHMCSFIRGVRDEHHNMVTRAKRGDIDVKLRCRRPPLCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCU4</accession>
    <name>B1YCU4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase A24A prepilin type IV</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0668</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350027.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCU4"/>
    <dbReference type="STRING" id="444157.Tneu_0668"/>
    <dbReference type="GeneID" id="6165311"/>
    <dbReference type="KEGG" id="tne:Tneu_0668"/>
    <dbReference type="eggNOG" id="arCOG02298">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1346453_0_0_2"/>
    <dbReference type="OrthoDB" id="29039at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1220">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="170"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="192" mass="21024" checksum="EBB50694EA15D42A" modified="2008-05-20" version="1">MIAEAALGVFITLAALQDVKTREIDPRIFLAAAAPAAALIYLNWGNPLYLFSLAVGASLALLMRALGSGYADSIALALISAAPPIFFLPTPFVVVMAGSALLPATMLWLFLNNRRRPCRMSALEKITHICVTREEFAKNPLKYIVGEVKDMEKYDPTAARVEGQWIKAKYGLPYLVYLAVGYWVYLVARALG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="93" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD09</accession>
    <name>SYT_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Threonine--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Threonyl-tRNA synthetase</fullName>
            <shortName evidence="1">ThrRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">thrS</name>
        <name type="ordered locus">Tneu_0733</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>tRNA(Thr) + L-threonine + ATP = L-threonyl-tRNA(Thr) + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:24624"/>
            <dbReference type="Rhea" id="RHEA-COMP:9670"/>
            <dbReference type="Rhea" id="RHEA-COMP:9704"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78534"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">The N-terminal domain is an archaea-specific tRNA-editing domain that hydrolyzes incorrectly charged L-seryl-tRNA(Thr). Catalysis of tRNA editing is performed by the charged tRNA itself.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.3" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350092.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD09"/>
    <dbReference type="SMR" id="B1YD09"/>
    <dbReference type="STRING" id="444157.Tneu_0733"/>
    <dbReference type="GeneID" id="6165169"/>
    <dbReference type="KEGG" id="tne:Tneu_0733"/>
    <dbReference type="eggNOG" id="arCOG00401">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029833_0_0_2"/>
    <dbReference type="OrthoDB" id="372136at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004829">
        <property type="term" value="F:threonine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006435">
        <property type="term" value="P:threonyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00860">
        <property type="entry name" value="ThrRS_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.930.10:FF:000076">
        <property type="entry name" value="Threonine--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.800:FF:000001">
        <property type="entry name" value="Threonine--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="entry name" value="Anticodon-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.80.10">
        <property type="entry name" value="D-tyrosyl-tRNA(Tyr) deacylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00184">
        <property type="entry name" value="Thr_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023509">
        <property type="entry name" value="DTD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002320">
        <property type="entry name" value="Thr-tRNA-ligase_IIa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015011">
        <property type="entry name" value="Threonyl-tRNA_syn_edit_dom_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047246">
        <property type="entry name" value="ThrRS_anticodon"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003068">
        <property type="entry name" value="PRK03991.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11451:SF44">
        <property type="entry name" value="THREONINE--TRNA LIGASE, CHLOROPLASTIC_MITOCHONDRIAL 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11451">
        <property type="entry name" value="THREONINE-TRNA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08915">
        <property type="entry name" value="tRNA-Thr_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01047">
        <property type="entry name" value="TRNASYNTHTHR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52954">
        <property type="entry name" value="Class II aaRS ABD-related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0820">tRNA-binding</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000098622" description="Threonine--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="region of interest" description="Editing domain" evidence="1">
        <location>
            <begin position="1"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="region of interest" description="Catalytic" evidence="1">
        <location>
            <begin position="195"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="region of interest" description="Catalytic">
        <location>
            <begin position="196"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="288"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="339"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="460"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00184"/>
        </source>
    </evidence>
    <sequence length="609" mass="70718" checksum="1FFB8D797DF44F37" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD22</accession>
    <name>B1YD22_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Large ribosomal subunit protein uL29</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpl29</name>
        <name evidence="5" type="ordered locus">Tneu_0746</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the universal ribosomal protein uL29 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD22"/>
    <dbReference type="STRING" id="444157.Tneu_0746"/>
    <dbReference type="KEGG" id="tne:Tneu_0746"/>
    <dbReference type="eggNOG" id="arCOG00785">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_158491_2_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00427">
        <property type="entry name" value="Ribosomal_L29_HIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00374">
        <property type="entry name" value="Ribosomal_uL29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001854">
        <property type="entry name" value="Ribosomal_uL29"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018254">
        <property type="entry name" value="Ribosomal_uL29_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036049">
        <property type="entry name" value="Ribosomal_uL29_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00012">
        <property type="entry name" value="L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00831">
        <property type="entry name" value="Ribosomal_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46561">
        <property type="entry name" value="Ribosomal protein L29 (L29p)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00579">
        <property type="entry name" value="RIBOSOMAL_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="57" mass="6866" checksum="7B52EED1C2BD191F" modified="2008-05-20" version="1">MKPEERRELLNQLRAELVKLETQRARGFVEKPGRIREIRRAIARILTIEREERRPSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD66</accession>
    <name>B1YD66_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">2-oxoacid oxidoreductase (ferredoxin)</fullName>
            <ecNumber evidence="4">1.2.7.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0790</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a 2-oxocarboxylate + 2 oxidized [2Fe-2S]-[ferredoxin] + CoA = an acyl-CoA + 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:42316"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="1.2.7.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heterodimer composed of an alpha and a beta subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the transketolase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.11" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350149.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD66"/>
    <dbReference type="STRING" id="444157.Tneu_0790"/>
    <dbReference type="GeneID" id="6164395"/>
    <dbReference type="KEGG" id="tne:Tneu_0790"/>
    <dbReference type="eggNOG" id="arCOG01053">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009227_4_1_2"/>
    <dbReference type="OrthoDB" id="25494at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018491">
        <property type="term" value="F:2-oxobutyrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd02012">
        <property type="entry name" value="TPP_TK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47514">
        <property type="entry name" value="TRANSKETOLASE N-TERMINAL SECTION-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47514:SF1">
        <property type="entry name" value="TRANSKETOLASE N-TERMINAL SECTION-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00456">
        <property type="entry name" value="Transketolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="Transketolase N-terminal" evidence="7">
        <location>
            <begin position="30"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00048893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="267" mass="28754" checksum="9E6037E8F7839B3E" modified="2008-05-20" version="1">MERSRPELNGLICKARRYIVLMAGYDPGMHLGSSLSVVEIAAALYGTGRVKFNVANGTRDRNYFVLSKGHAVHAIYALAAAMGYLSIDELRETGSLGSRLQNHPEVDTPFVDVPNSGSLGQGISIAVGLALGLRLRGEPGRVYLVTGDGELDEGQSWESFAVAAHYGLNNLVTIVDLNGVQLDGHSEEVLRKGDLAARFRSLGFEVFEVDGHDVGQIIEALEKAERSAKPPVIIAKTVRGRGVPPIEDTAKQRLSRDDALKYAGNIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD73</accession>
    <name>B1YD73_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">(2Fe-2S)-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0797</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350156.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD73"/>
    <dbReference type="STRING" id="444157.Tneu_0797"/>
    <dbReference type="GeneID" id="6164405"/>
    <dbReference type="KEGG" id="tne:Tneu_0797"/>
    <dbReference type="eggNOG" id="arCOG01925">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052511_3_1_2"/>
    <dbReference type="OrthoDB" id="37184at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.30:FF:000020">
        <property type="entry name" value="Xanthine dehydrogenase iron-sulfur subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.120">
        <property type="entry name" value="[2Fe-2S]-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051452">
        <property type="entry name" value="Diverse_Oxidoreductases"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44379">
        <property type="entry name" value="OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR44379:SF5">
        <property type="entry name" value="OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="2Fe-2S ferredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="CO dehydrogenase ISP C-domain like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="6">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="147" mass="16144" checksum="03C6279F885484E3" modified="2008-05-20" version="1">MRVRLRVNGVWHEVDVEPRALLVHVLRDLGYRSVRVGCDTATCGACTVLMNGRPVKSCNVLAVQADGAEIYTAEYSDEVMERLREAFKRKHAAQCGFCTSGMLLTAYYLVKRGAKTAEEIAEGLAGVLCRCTGYQNIVEAVKEVANS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDG2</accession>
    <name>B1YDG2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0888</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350245.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDG2"/>
    <dbReference type="STRING" id="444157.Tneu_0888"/>
    <dbReference type="GeneID" id="58787335"/>
    <dbReference type="KEGG" id="tne:Tneu_0888"/>
    <dbReference type="eggNOG" id="arCOG07431">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_195722_0_0_2"/>
    <dbReference type="OrthoDB" id="23282at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="58" mass="6839" checksum="F940B1A3C232363D" modified="2008-05-20" version="1">MVYPPKTLVVGRCSRCGRRLYAFEDRYVCKKMNYVFCDVCARKLQYRCPDAITPLELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDG7</accession>
    <name>B1YDG7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0893</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350250.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDG7"/>
    <dbReference type="STRING" id="444157.Tneu_0893"/>
    <dbReference type="GeneID" id="6164380"/>
    <dbReference type="KEGG" id="tne:Tneu_0893"/>
    <dbReference type="eggNOG" id="arCOG05701">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2748347_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="66" mass="7272" checksum="DBDC074E9D14A569" modified="2008-05-20" version="1">MRVVARLVASKIGEEPTDLDKVLESLGVDLPWIDKIMLVQNMEGVEAVYHAVSGKILVRRVNAARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDI8</accession>
    <name>B1YDI8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Electron transfer flavoprotein alpha/beta-subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0914</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350271.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDI8"/>
    <dbReference type="STRING" id="444157.Tneu_0914"/>
    <dbReference type="GeneID" id="6164291"/>
    <dbReference type="KEGG" id="tne:Tneu_0914"/>
    <dbReference type="eggNOG" id="arCOG00446">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060196_2_2_2"/>
    <dbReference type="OrthoDB" id="6635at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01714">
        <property type="entry name" value="ETF_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014730">
        <property type="entry name" value="ETF_a/b_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012255">
        <property type="entry name" value="ETF_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033948">
        <property type="entry name" value="ETF_beta_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21294">
        <property type="entry name" value="ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21294:SF20">
        <property type="entry name" value="ELECTRON TRANSFER FLAVOPROTEIN, SUBUNIT BETA (ETFB)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01012">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000090">
        <property type="entry name" value="Beta-ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00893">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Electron transfer flavoprotein alpha/beta-subunit N-terminal" evidence="1">
        <location>
            <begin position="20"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="257" mass="27833" checksum="8BB3E2033BCA1ABF" modified="2008-05-20" version="1">MKIAVLVKIALDAGQLRARDGVSVEETPLKISDVDRNAVEEAVKLKGQGGSAYGVSVLKWGPLPRRIQEAENLLREALAMGLDEAYLVADERLLTPSHLATAKAIAAVVKRVGADLVLAGEASVDNYTGQIPARVAAELRWPLVSYAREIKVEGGRLLAKRDLEDRLEVVEAPLPAVVSVTREINQPRIPTLLAIKAAMKKPLHKLSLGDLGVETAPKASAVYKPLAAQRKRIIIREGTPAEKADKLLQYLRQEGLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDM8</accession>
    <name>B1YDM8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ASCH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0956</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDM8"/>
    <dbReference type="STRING" id="444157.Tneu_0956"/>
    <dbReference type="KEGG" id="tne:Tneu_0956"/>
    <dbReference type="eggNOG" id="arCOG01734">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_135561_2_0_2"/>
    <dbReference type="OrthoDB" id="84651at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="136" mass="14623" checksum="F1EC50D41A8160CF" modified="2008-05-20" version="1">MSIKPQLGRQILAGQRRCELRRLAGPLVQPGDAVYLYFTKPAAAVAGRFTAGLVFIAPPRSLPRLLQQLGDCGVGEEDTRRVQGARYAVLIEARSPAPCAAPVPPAAAGLRPPPSYRRLDPRSAARLEALCRGEKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="36" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDN2</accession>
    <name>B1YDN2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0960</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDN2"/>
    <dbReference type="STRING" id="444157.Tneu_0960"/>
    <dbReference type="KEGG" id="tne:Tneu_0960"/>
    <dbReference type="HOGENOM" id="CLU_3075505_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="52" mass="5779" checksum="8791F821EF55541D" modified="2008-05-20" version="1">MNDIPRDFLEIANAIATCTLKELDRCFLETNEGLMRTGISRAFRVSTSQAGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDN9</accession>
    <name>B1YDN9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HEPN domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0967</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350322.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDN9"/>
    <dbReference type="STRING" id="444157.Tneu_0967"/>
    <dbReference type="GeneID" id="6164581"/>
    <dbReference type="KEGG" id="tne:Tneu_0967"/>
    <dbReference type="eggNOG" id="arCOG01194">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2079505_0_0_2"/>
    <dbReference type="OrthoDB" id="28418at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007842">
        <property type="entry name" value="HEPN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05168">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81593">
        <property type="entry name" value="Nucleotidyltransferase substrate binding subunit/domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HEPN" evidence="1">
        <location>
            <begin position="4"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="114" mass="12565" checksum="75F389158CDEA28F" modified="2008-05-20" version="1">MHPKWLERHFRHLHQALAALEEGDATAACYNAYVSAEALAKGALGYHPYGQAESIKRLPALVREIFGGNPPPDAEKCAQCLEREAFSNDAQTCIKCAELLADLIHNHLKTTKPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDS9</accession>
    <name>B1YDS9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">protein-synthesizing GTPase</fullName>
            <ecNumber evidence="1">3.6.5.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1010</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>GTP + H2O = GDP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="3.6.5.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="3.6.5.3" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350362.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDS9"/>
    <dbReference type="STRING" id="444157.Tneu_1010"/>
    <dbReference type="GeneID" id="6165029"/>
    <dbReference type="KEGG" id="tne:Tneu_1010"/>
    <dbReference type="eggNOG" id="arCOG01563">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027154_0_1_2"/>
    <dbReference type="OrthoDB" id="7798at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001731">
        <property type="term" value="P:formation of translation preinitiation complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01888">
        <property type="entry name" value="eIF2_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03688">
        <property type="entry name" value="eIF2_gamma_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050543">
        <property type="entry name" value="eIF2G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015256">
        <property type="entry name" value="eIF2g_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044127">
        <property type="entry name" value="eIF2g_dom_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044128">
        <property type="entry name" value="eIF2g_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022424">
        <property type="entry name" value="TIF2_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03680">
        <property type="entry name" value="eif2g_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003077">
        <property type="entry name" value="PRK04000.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42854">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42854:SF3">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09173">
        <property type="entry name" value="eIF2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="10">
        <location>
            <begin position="5"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="411" mass="43645" checksum="EFF7FCA622AB965B" modified="2008-05-20" version="1">MAFVYPDAIVSTAGHVDHGKTQTAYALSGVWVMKHSEEIKKAMTIKLGYAQVGIYDCGGEYYYTDGILANGRCPDGSEPKLVRRISLLDVPGHEVLVATMVSGAAVVDGAVLVVDASQPAPQPQTVEHFAVLDIIGVRRLVVAQNKIDLIPREKALENYQQIRKFLAGTWAEGAKVVPISALHRVNIDVLATYIAKSVPPREAELGRPPRFSVLRSFNVNPPGTPPEKLRGGVLGGTLLQGVLRVGDEIEVRPGLKVDKPKPGYQPIRTKVLSIEYSGVKVDEARPGGLVGVMTGLDPALAKADALAGAVAGAPGTLPPVWTAIEVEAKPIPRSAEGRGEPFKQGEVALVAVGPATVFGVVQAVKKDVVTLALKKAVCAEQGSKVVLIRQVKNRWIVTHYGVLKGGTAVLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDT3</accession>
    <name>B1YDT3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1014</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350366.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDT3"/>
    <dbReference type="STRING" id="444157.Tneu_1014"/>
    <dbReference type="GeneID" id="6164969"/>
    <dbReference type="KEGG" id="tne:Tneu_1014"/>
    <dbReference type="eggNOG" id="arCOG05418">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1782595_0_0_2"/>
    <dbReference type="OrthoDB" id="29071at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="159" mass="16865" checksum="D5B2719489F84257" modified="2008-05-20" version="1">MKLSTGAKWGLVAGLIVGLATGIVGYFGIDAIKNQLADYIYREAIAQRAPPGTARQAAQLYVQILPLATIVSGVVGSIIIYLIVGVVMALLWERLRMPWYAKGALFGVALLLISAAPSLAVPPPPGAPTPPAAYLYAIWALNLAGPIFLAWLLERKSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="39" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDU2</accession>
    <name>B1YDU2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1024</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350375.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDU2"/>
    <dbReference type="GeneID" id="6164991"/>
    <dbReference type="KEGG" id="tne:Tneu_1024"/>
    <dbReference type="eggNOG" id="arCOG07436">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2353316_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="96" mass="10168" checksum="B46133B162915EA9" modified="2008-05-20" version="1">MTQPLQGCLSTNGSPALRFALARAFIRELEALLPAARVGEVALSVELKHRVVVGGFVAGRGIFLGQRLVNCSGNQRLLDAATGLLITATGFVYLLM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDW0</accession>
    <name>B1YDW0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thermopsin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1042</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350393.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDW0"/>
    <dbReference type="STRING" id="444157.Tneu_1042"/>
    <dbReference type="GeneID" id="6164973"/>
    <dbReference type="KEGG" id="tne:Tneu_1042"/>
    <dbReference type="eggNOG" id="arCOG05471">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_350115_0_0_2"/>
    <dbReference type="OrthoDB" id="29106at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="766" mass="84022" checksum="4A5C4914FFB6F9B2" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE60</accession>
    <name>B1YE60_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NurA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1143</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350492.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE60"/>
    <dbReference type="GeneID" id="6165737"/>
    <dbReference type="KEGG" id="tne:Tneu_1143"/>
    <dbReference type="eggNOG" id="arCOG00287">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066378_0_0_2"/>
    <dbReference type="OrthoDB" id="28687at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018977">
        <property type="entry name" value="NurA_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09376">
        <property type="entry name" value="NurA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00933">
        <property type="entry name" value="NurA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NurA" evidence="1">
        <location>
            <begin position="51"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="329" mass="34502" checksum="839273D50F8E6887" modified="2008-05-20" version="1">MEDVFRLARLLEVFGDRAAESLPPVVGEVGEGGVVDCPYWEVSWDVSAPPGGLWGLDSHTSVVEFEGVSVVVATGALVGGGVALVPGLGVRWLGVRFNFAWEGPPPDLGPGVYVVSEHAGVVFDSRVDLESVRDEVRSGVELALAGAWDGSGYLLVDGPVFRAAEAAEREGVAGAIYRGVMERRARALGGKAVGVVKRVERAAYLARCVGEGASDEVVARRLLGGRPGRVGPISVSSAGFTKWMYYVGAPTARGLRVLRVEALSPEVAEEAASWVPALAGVDGVPVPIAVADRLARRLNAGVLKVLYGATRAEPTYSGYEALARALQEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8M3</accession>
    <name>B1Y8M3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Flavinylation-associated cytochrome domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1173</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8M3"/>
    <dbReference type="STRING" id="444157.Tneu_1173"/>
    <dbReference type="KEGG" id="tne:Tneu_1173"/>
    <dbReference type="eggNOG" id="arCOG04002">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_189638_0_0_2"/>
    <dbReference type="OrthoDB" id="24547at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025517">
        <property type="entry name" value="DUF4405"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14358">
        <property type="entry name" value="DUF4405"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="domain" description="Flavinylation-associated cytochrome" evidence="2">
        <location>
            <begin position="11"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="88" mass="9582" checksum="D55329B420E0F062" modified="2008-05-20" version="1">MMRPSLFIRAIVIMLLIASGVIMAISGVVLYFAPSGPGSGNAVILGATKHFWNNLHTYTGFSIIGLATAHVILNRRSLLFYTKKLLFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8N3</accession>
    <name>B1Y8N3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF1634 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1183</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350531.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8N3"/>
    <dbReference type="STRING" id="444157.Tneu_1183"/>
    <dbReference type="GeneID" id="6165191"/>
    <dbReference type="KEGG" id="tne:Tneu_1183"/>
    <dbReference type="eggNOG" id="arCOG05396">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140339_1_0_2"/>
    <dbReference type="OrthoDB" id="56431at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012861">
        <property type="entry name" value="DUF1634"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07843">
        <property type="entry name" value="DUF1634"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="119" mass="12346" checksum="9EE96F5A529E6B64" modified="2008-05-20" version="1">MELEDAIVVVMRVGLAASVALLLAGLLLLGAGPDASAVASLRSPVNSSLYPPARLAANLPSHPAVALLFMGLAVLLITPLVRVALAVAEFVRERDVIYTALTIFVLAMLIISLVLPGHV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8P7</accession>
    <name>RS27A_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein eS31</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">30S ribosomal protein S27ae</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps27ae</name>
        <name type="ordered locus">Tneu_1198</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eS31 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350545.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8P7"/>
    <dbReference type="SMR" id="B1Y8P7"/>
    <dbReference type="STRING" id="444157.Tneu_1198"/>
    <dbReference type="GeneID" id="6165164"/>
    <dbReference type="KEGG" id="tne:Tneu_1198"/>
    <dbReference type="eggNOG" id="arCOG04183">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_179743_1_0_2"/>
    <dbReference type="OrthoDB" id="25142at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.50.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00777">
        <property type="entry name" value="Ribosomal_eS31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002906">
        <property type="entry name" value="Ribosomal_eS31"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022845">
        <property type="entry name" value="Ribosomal_eS31_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001669">
        <property type="entry name" value="PRK00432.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01599">
        <property type="entry name" value="Ribosomal_S27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01402">
        <property type="entry name" value="Ribosomal_S27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="Zn-binding ribosomal proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <keyword id="KW-0863">Zinc-finger</keyword>
    <feature type="chain" id="PRO_1000194305" description="Small ribosomal subunit protein eS31">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="1">
        <location>
            <begin position="34"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="63" mass="7357" checksum="64E153C14B75D6E7" modified="2008-05-20" version="1">MSKKAPAQKKLPRAAAWYEIDMQKGVFRFKNKLCPKCGSVMAFHREPVPRWHCGKCGFTQFQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8R9</accession>
    <name>B1Y8R9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1221</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350567.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8R9"/>
    <dbReference type="STRING" id="444157.Tneu_1221"/>
    <dbReference type="GeneID" id="6166247"/>
    <dbReference type="KEGG" id="tne:Tneu_1221"/>
    <dbReference type="eggNOG" id="arCOG07479">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_189639_0_0_2"/>
    <dbReference type="OrthoDB" id="29232at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="78" mass="8691" checksum="AD419747B6C5030A" modified="2008-05-20" version="1">MVLKRRSLEEALEMPAGDNGVETKAEGWQDCLVKALVEMPPELSEKVLSALPKDVLMSALQSRDDPYLKLALLLLARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8T7</accession>
    <name>B1Y8T7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1239</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350585.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8T7"/>
    <dbReference type="STRING" id="444157.Tneu_1239"/>
    <dbReference type="GeneID" id="6166060"/>
    <dbReference type="KEGG" id="tne:Tneu_1239"/>
    <dbReference type="eggNOG" id="arCOG00924">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="97750at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015807">
        <property type="term" value="P:L-amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052156">
        <property type="entry name" value="BCAA_Transport_ATP-bd_LivF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43820:SF5">
        <property type="entry name" value="HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43820">
        <property type="entry name" value="HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="2"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="213" mass="23142" checksum="2757E36408E55E56" modified="2008-05-20" version="1">MIKAERLEVKLGPLHVVRGVTLEVGDGEVAALVGPNGAGKTSTLRAIMGLYPHGGSVLLDGRDISGLKAYERARLGIGFSPEDGGLFPSLTVKENLLLPMKSLRLPEERLEVVYGLFPMVKELLGRKAYTLSGGQRKIVSLARAILVGRRALLLDEIFEGVSPKFADDIKKAVTDYVKGEGVSLLLAESSTQYIAGFYHRIYKIERGAVLEHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8W8</accession>
    <name>B1Y8W8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Flavin reductase domain protein FMN-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1270</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the flavoredoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350616.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8W8"/>
    <dbReference type="STRING" id="444157.Tneu_1270"/>
    <dbReference type="GeneID" id="6166224"/>
    <dbReference type="KEGG" id="tne:Tneu_1270"/>
    <dbReference type="eggNOG" id="arCOG02017">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059021_5_3_2"/>
    <dbReference type="OrthoDB" id="8522at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="entry name" value="Electron Transport, Fmn-binding Protein, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052174">
        <property type="entry name" value="Flavoredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43567:SF1">
        <property type="entry name" value="FLAVOREDOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43567">
        <property type="entry name" value="FLAVOREDOXIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50475">
        <property type="entry name" value="FMN-binding split barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin reductase like" evidence="4">
        <location>
            <begin position="8"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00038054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="181" mass="20139" checksum="99A346A18BCC3C8D" modified="2008-05-20" version="1">MYQGKFYRLLHPRPTLVVVSRCPGGRLNLMPASWNTPVSEDPPTVAVAVERSSYTHECLKHHRRATLNVLPLEAADLIYKLGTVSGRDVDKAAQFGVAFEKSEKVDVPRVAGAIAGYEAEVYMEVEVGEVTLFIFKVLHSWAAPGVADQWGYDFKRVNIPLHGAGRAFYGVDPRPRFVKKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8X2</accession>
    <name>B1Y8X2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutamine--scyllo-inositol transaminase</fullName>
            <ecNumber evidence="2">2.6.1.50</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1274</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DegT/DnrJ/EryC1 family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.50" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350620.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8X2"/>
    <dbReference type="STRING" id="444157.Tneu_1274"/>
    <dbReference type="GeneID" id="6165709"/>
    <dbReference type="KEGG" id="tne:Tneu_1274"/>
    <dbReference type="eggNOG" id="arCOG00118">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033332_7_2_2"/>
    <dbReference type="OrthoDB" id="10355at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047310">
        <property type="term" value="F:glutamine-scyllo-inositol transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00616">
        <property type="entry name" value="AHBA_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000653">
        <property type="entry name" value="DegT/StrS_aminotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30244:SF34">
        <property type="entry name" value="DTDP-4-AMINO-4,6-DIDEOXYGALACTOSE TRANSAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30244">
        <property type="entry name" value="TRANSAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01041">
        <property type="entry name" value="DegT_DnrJ_EryC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000390">
        <property type="entry name" value="PLP_StrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="1" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU004508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="404" mass="44619" checksum="42D8E8D14310926E" modified="2008-05-20" version="1">MLAIEGGRPVREKPIVARPAVYSEEVIRDIAEVLKSGVLTAQHGRWVKAFEAELAAYLGVKYAVAVSNGTTALHTALKAIGVGPGDEVVTTPFTFAATATAILHSNAVPVFADIDRETLNLDPASAEEKITERTKAVVVVHLAGMPAEMDQFMKLAERYGVKIVEDTAQALGAEYRGRRAGSIGHISTFSLYATKHITSGEGGAVATDVAAYAERARLIRAHGEVGKYSYELLGYNYRMTEMQGVLAYHQLKQMPEMQKRREAYVKTLLEELAPLEGDLLTITRPRPYVRHAWHLVQILLAVEKLKKPRDYVVEALRAEGVGNAFVAYPTPLYKTPLFQRREGHGLGCPWTCPYQRRKVEYKPLPNAEWAAERVLSLLVMPNLTEQDAVDTATAVKKVLTALRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Y2</accession>
    <name>B1Y8Y2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcriptional regulator, CopG family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1284</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the transcriptional regulatory CopG/NikR family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350630.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Y2"/>
    <dbReference type="STRING" id="444157.Tneu_1284"/>
    <dbReference type="GeneID" id="6165925"/>
    <dbReference type="KEGG" id="tne:Tneu_1284"/>
    <dbReference type="eggNOG" id="arCOG01008">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_113319_3_0_2"/>
    <dbReference type="OrthoDB" id="25654at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22231">
        <property type="entry name" value="RHH_NikR_HicB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1150">
        <property type="entry name" value="ACT-like. Chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="entry name" value="Met repressor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027271">
        <property type="entry name" value="Acetolactate_synth/TF_NikR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002145">
        <property type="entry name" value="CopG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050192">
        <property type="entry name" value="CopG/NikR_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014864">
        <property type="entry name" value="TF_NikR_Ni-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34719">
        <property type="entry name" value="NICKEL-RESPONSIVE REGULATOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34719:SF2">
        <property type="entry name" value="NICKEL-RESPONSIVE REGULATOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08753">
        <property type="entry name" value="NikR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01402">
        <property type="entry name" value="RHH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="ACT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="Ribbon-helix-helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Ribbon-helix-helix protein CopG" evidence="5">
        <location>
            <begin position="2"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="Transcription factor NikR nickel binding C-terminal" evidence="6">
        <location>
            <begin position="65"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="122" mass="13483" checksum="8CC4E9708225ABC0" modified="2008-05-20" version="1">MKRFGVSLPRDVADKVDRISQEMGVTRSEVVATALQEYLEARRSHAEPGHQCLGVVMALTDAFSEIGDVIEENKAHIVAYTHLHVEGRCLTIAVVKGAADQIEKLTLEVAKRSKISRYVPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Y9</accession>
    <name>B1Y8Y9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ThiamineS protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1291</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350637.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Y9"/>
    <dbReference type="STRING" id="444157.Tneu_1291"/>
    <dbReference type="GeneID" id="6165708"/>
    <dbReference type="KEGG" id="tne:Tneu_1291"/>
    <dbReference type="eggNOG" id="arCOG00537">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114601_1_0_2"/>
    <dbReference type="OrthoDB" id="98357at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052045">
        <property type="entry name" value="Sulfur_Carrier/Prot_Modifier"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38031:SF1">
        <property type="entry name" value="SULFUR CARRIER PROTEIN CYSO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38031">
        <property type="entry name" value="SULFUR CARRIER PROTEIN SLR0821-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="MoaD/ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="90" mass="9510" checksum="1FCB7558EEBCF0DC" modified="2008-05-20" version="1">MARVKLAGVLVALAGGRAELELEGSTVREILGGLASVSQKLYERVVGPDGRPRADIYIAVNDVDIRLLSGLSTAVKKDDVVLILAYIHPG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y949</accession>
    <name>TBP_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TATA-box-binding protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Box A-binding protein</fullName>
            <shortName evidence="1">BAP</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">TATA sequence-binding protein</fullName>
            <shortName evidence="1">TBP</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">TATA-box factor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">tbp</name>
        <name type="ordered locus">Tneu_1352</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TBP family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350697.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y949"/>
    <dbReference type="SMR" id="B1Y949"/>
    <dbReference type="STRING" id="444157.Tneu_1352"/>
    <dbReference type="GeneID" id="6164758"/>
    <dbReference type="KEGG" id="tne:Tneu_1352"/>
    <dbReference type="eggNOG" id="arCOG01764">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060161_4_3_2"/>
    <dbReference type="OrthoDB" id="350539at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04518">
        <property type="entry name" value="TBP_archaea"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.310.10:FF:000007">
        <property type="entry name" value="TATA-box-binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.310.10:FF:000010">
        <property type="entry name" value="TATA-box-binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.310.10">
        <property type="entry name" value="TATA-Binding Protein"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00408">
        <property type="entry name" value="TATA_bind_prot_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000814">
        <property type="entry name" value="TBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033711">
        <property type="entry name" value="TBP_archaea"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030491">
        <property type="entry name" value="TBP_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012295">
        <property type="entry name" value="TBP_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001592">
        <property type="entry name" value="PRK00394.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001593">
        <property type="entry name" value="PRK00394.1-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10126">
        <property type="entry name" value="TATA-BOX BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00352">
        <property type="entry name" value="TBP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00686">
        <property type="entry name" value="TIFACTORIID"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55945">
        <property type="entry name" value="TATA-box binding protein-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00351">
        <property type="entry name" value="TFIID"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0238">DNA-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0677">Repeat</keyword>
    <keyword id="KW-0804">Transcription</keyword>
    <keyword id="KW-0805">Transcription regulation</keyword>
    <feature type="chain" id="PRO_1000196666" description="TATA-box-binding protein">
        <location>
            <begin position="1"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="repeat" description="1">
        <location>
            <begin position="10"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="repeat" description="2">
        <location>
            <begin position="101"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00408"/>
        </source>
    </evidence>
    <sequence length="197" mass="21771" checksum="D2B133B6006D41CA" modified="2008-05-20" version="1">MASKGPSYRIENIVATVNLGVELDLEKLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAKNEEDLKNAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLFAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVILIFGSGKIVCTGAKSEKDVATAVQKLYNQLKDLGVLYIEEGEAEEGEEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y961</accession>
    <name>B1Y961_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">tRNA (pseudouridine(54)-N(1))-methyltransferase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1364</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350709.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y961"/>
    <dbReference type="STRING" id="444157.Tneu_1364"/>
    <dbReference type="GeneID" id="6164513"/>
    <dbReference type="KEGG" id="tne:Tneu_1364"/>
    <dbReference type="eggNOG" id="arCOG01239">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1656942_0_0_2"/>
    <dbReference type="OrthoDB" id="27492at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008175">
        <property type="term" value="F:tRNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030488">
        <property type="term" value="P:tRNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007158">
        <property type="entry name" value="TrmY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40703">
        <property type="entry name" value="TRNA (PSEUDOURIDINE(54)-N(1))-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40703:SF1">
        <property type="entry name" value="TRNA (PSEUDOURIDINE(54)-N(1))-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04013">
        <property type="entry name" value="Methyltrn_RNA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="alpha/beta knot"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="7">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="163" mass="18559" checksum="9B6F47C55DBD41BB" modified="2008-05-20" version="1">MSFLIKSDVACPWSIDPHNLVKGRFDVLIDFAVEALRGGAREVYIMLCDGTTYHLVSPHKGRSREIASWLLSTQALKTDLRSVVNSYRRVYYLHERGRDISEVPLEGDALYVFGDHDGLSSEDEAFLAKHAVWISLGPTPYMSWQAAVYVAWRLSKLRLDRDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y975</accession>
    <name>B1Y975_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Probable Brix domain-containing ribosomal biogenesis protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1378</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Probably involved in the biogenesis of the ribosome.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350723.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y975"/>
    <dbReference type="STRING" id="444157.Tneu_1378"/>
    <dbReference type="GeneID" id="6164471"/>
    <dbReference type="KEGG" id="tne:Tneu_1378"/>
    <dbReference type="eggNOG" id="arCOG03247">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1444746_0_0_2"/>
    <dbReference type="OrthoDB" id="117530at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10480">
        <property type="entry name" value="Probable brix-domain ribosomal biogenesis protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00699">
        <property type="entry name" value="BriX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007109">
        <property type="entry name" value="Brix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023548">
        <property type="entry name" value="Brix_dom_Rbsml_bgen_prot"/>
    </dbReference>
    <dbReference type="SMART" id="SM00879">
        <property type="entry name" value="Brix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52954">
        <property type="entry name" value="Class II aaRS ABD-related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50833">
        <property type="entry name" value="BRIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="Brix" evidence="3">
        <location>
            <begin position="3"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="179" mass="20198" checksum="F8E2810CEE41F976" modified="2008-05-20" version="1">MGVRVLITTSRLPSKKTLELVNDLVNSLPGTDKVVRGKKPFMALLEEAAIAEARYILFIWDRRGMPSALLFYDVAQRAWRPYMLKISGIRTRRELPVYVARRPRAKTAVIVDLAGGEVGDVLAEVFHYPIMYDLEAARGRFDTVILIRSGDGYVVELLGPDLGPRASMLKIEKIVYRHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y988</accession>
    <name>B1Y988_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Type 2 DNA topoisomerase 6 subunit A</fullName>
            <ecNumber evidence="11">5.6.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Type II DNA topoisomerase VI subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">top6A</name>
        <name evidence="16" type="ordered locus">Tneu_1392</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Relaxes both positive and negative superturns and exhibits a strong decatenase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homodimer. Heterotetramer of two Top6A and two Top6B chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 11 12">Belongs to the TOP6A family.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350736.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y988"/>
    <dbReference type="STRING" id="444157.Tneu_1392"/>
    <dbReference type="GeneID" id="6165023"/>
    <dbReference type="KEGG" id="tne:Tneu_1392"/>
    <dbReference type="eggNOG" id="arCOG04143">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037229_1_0_2"/>
    <dbReference type="OrthoDB" id="5866at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00223">
        <property type="entry name" value="TOPRIM_TopoIIB_SPO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1360.10:FF:000011">
        <property type="entry name" value="Type 2 DNA topoisomerase 6 subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1360.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00132">
        <property type="entry name" value="Top6A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002815">
        <property type="entry name" value="Spo11/TopoVI_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013049">
        <property type="entry name" value="Spo11/TopoVI_A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036078">
        <property type="entry name" value="Spo11/TopoVI_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049333">
        <property type="entry name" value="Topo_VI_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004085">
        <property type="entry name" value="TopoVI_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034136">
        <property type="entry name" value="TOPRIM_Topo6A/Spo11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003336">
        <property type="entry name" value="PRK04342.1-5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10848">
        <property type="entry name" value="MEIOTIC RECOMBINATION PROTEIN SPO11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10848:SF0">
        <property type="entry name" value="MEIOTIC RECOMBINATION PROTEIN SPO11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21180">
        <property type="entry name" value="TOP6A-Spo11_Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20768">
        <property type="entry name" value="Topo_VI_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04406">
        <property type="entry name" value="TP6A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01550">
        <property type="entry name" value="TOP6AFAMILY"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01552">
        <property type="entry name" value="TPISMRASE6A"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56726">
        <property type="entry name" value="DNA topoisomerase IV, alpha subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52041">
        <property type="entry name" value="TOPO_IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 11 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10 11 12" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11 12" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="Spo11/DNA topoisomerase VI subunit A N-terminal" evidence="13">
        <location>
            <begin position="67"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="Type II DNA topoisomerase VI subunit A all-beta" evidence="14">
        <location>
            <begin position="149"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="Topoisomerase 6 subunit A/Spo11 TOPRIM" evidence="15">
        <location>
            <begin position="192"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-tyrosine intermediate" evidence="11 12">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF04406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF20768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF21180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ACB40317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="367" mass="42582" checksum="431B7B0C38C53E31" modified="2008-05-20" version="1">MTSRSEFLKRLENWGADLAKAILELKEPVMEIPARTLSNTIWDEKAKMLKLGPEKMHRRFLDVKESRRFMQTVLMLRLIVEAIREDVYPTIRDLYYNGKHTITFKDPLGRTHRENTWDEQAESNAVIEDIEVAANVLREEMGVSADVKGKIVGPIVVRSQGYELDASKFGETALSLPVNVDGLEIVKVEASYVLVVEKDAIFQRLVREKFWSQESAVLVTAKGMPDRATRRFIRRLNEEYKLPVYVLTDGDPYGWYIYSVYKSGSIKLSYESERLATPDAKFLGLTATDIDAYKISDNYVIAANDRDIKRAQELLRYPWFQKSEWTKEINLFLKKKKKVEIEALSTHGLKFLHDYLRDKIRGRKFID</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9A3</accession>
    <name>B1Y9A3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Ribosomal-protein-alanine acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1407</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the acetyltransferase family. RimI subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350751.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9A3"/>
    <dbReference type="STRING" id="444157.Tneu_1407"/>
    <dbReference type="GeneID" id="6166114"/>
    <dbReference type="KEGG" id="tne:Tneu_1407"/>
    <dbReference type="eggNOG" id="arCOG00833">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013985_23_0_2"/>
    <dbReference type="OrthoDB" id="43754at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04301">
        <property type="entry name" value="NAT_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006464">
        <property type="entry name" value="AcTrfase_RimI/Ard1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050680">
        <property type="entry name" value="YpeA/RimI_acetyltransf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01575">
        <property type="entry name" value="rimI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43420">
        <property type="entry name" value="ACETYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43420:SF12">
        <property type="entry name" value="N-ACETYLTRANSFERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="Acyl-CoA N-acyltransferases (Nat)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="5">
        <location>
            <begin position="1"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="159" mass="17653" checksum="D3D5DBDB5614C3F0" modified="2008-05-20" version="1">MLRRCQASDIPSLYEIELKSFKPDDIYSVELLKFLCSYCYDNSYVYVAGGKVVGYIVTCIEGGRAHVIAIAVDPDFRGRGVGKALLCTALRLLADGKVSDVFLEVRVSNEPALRLYQAAGFKVVELLKSYYSDGEDGYRLSLGDRKKAAEFCGRLSEKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9F2</accession>
    <name>B1Y9F2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 13">Valine--tRNA ligase</fullName>
            <ecNumber evidence="2 13">6.1.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ordered locus">Tneu_1456</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>tRNA(Val) + L-valine + ATP = L-valyl-tRNA(Val) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:10704"/>
            <dbReference type="Rhea" id="RHEA-COMP:9672"/>
            <dbReference type="Rhea" id="RHEA-COMP:9708"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57762"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78537"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.9"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.9" evidence="2 13"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350800.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9F2"/>
    <dbReference type="STRING" id="444157.Tneu_1456"/>
    <dbReference type="GeneID" id="6165504"/>
    <dbReference type="KEGG" id="tne:Tneu_1456"/>
    <dbReference type="eggNOG" id="arCOG00808">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001493_0_2_2"/>
    <dbReference type="OrthoDB" id="23906at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004832">
        <property type="term" value="F:valine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006438">
        <property type="term" value="P:valyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07962">
        <property type="entry name" value="Anticodon_Ia_Val"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.620:FF:000192">
        <property type="entry name" value="Valine--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.620:FF:000362">
        <property type="entry name" value="Valyl-tRNA synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.730.10">
        <property type="entry name" value="Isoleucyl-tRNA Synthetase, Domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033705">
        <property type="entry name" value="Anticodon_Ia_Val"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002303">
        <property type="entry name" value="Valyl-tRNA_ligase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009687">
        <property type="entry name" value="PRK13208.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00422">
        <property type="entry name" value="valS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11946:SF93">
        <property type="entry name" value="VALINE--TRNA LIGASE, CHLOROPLASTIC_MITOCHONDRIAL 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11946">
        <property type="entry name" value="VALYL-TRNA SYNTHETASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00986">
        <property type="entry name" value="TRNASYNTHVAL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="ValRS/IleRS/LeuRS editing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminoacyl-tRNA synthetase class Ia" evidence="14">
        <location>
            <begin position="17"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="domain" description="Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase anticodon-binding" evidence="15">
        <location>
            <begin position="610"/>
            <end position="757"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00055630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00061452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="NCBIfam" id="TIGR00422"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ACB40381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="799" mass="93157" checksum="889ACFE31F53B9E5" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="109" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9G0</accession>
    <name>B1Y9G0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Succinate--CoA ligase [ADP-forming] subunit alpha</fullName>
            <ecNumber evidence="4">6.2.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Succinyl-CoA synthetase subunit alpha</fullName>
            <shortName evidence="4">SCS-alpha</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">sucD</name>
        <name evidence="9" type="ordered locus">Tneu_1464</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 7">Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>GTP + succinate + CoA = succinyl-CoA + GDP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:22120"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 7">
            <text>succinate + ATP + CoA = succinyl-CoA + ADP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17661"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.2.1.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 7">Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 7">Heterotetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 6">Belongs to the succinate/malate CoA ligase alpha subunit family.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.5" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350808.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9G0"/>
    <dbReference type="STRING" id="444157.Tneu_1464"/>
    <dbReference type="GeneID" id="6165457"/>
    <dbReference type="KEGG" id="tne:Tneu_1464"/>
    <dbReference type="eggNOG" id="arCOG01339">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052104_0_0_2"/>
    <dbReference type="OrthoDB" id="55711at2157"/>
    <dbReference type="BRENDA" id="6.2.1.5">
        <property type="organism ID" value="6328"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009361">
        <property type="term" value="C:succinate-CoA ligase complex (ADP-forming)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004775">
        <property type="term" value="F:succinate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004776">
        <property type="term" value="F:succinate-CoA ligase (GDP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.261:FF:000006">
        <property type="entry name" value="Succinate--CoA ligase [ADP-forming] subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000277">
        <property type="entry name" value="Succinate--CoA ligase [ADP-forming] subunit alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="entry name" value="Succinyl-CoA synthetase domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01988">
        <property type="entry name" value="Succ_CoA_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017440">
        <property type="entry name" value="Cit_synth/succinyl-CoA_lig_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033847">
        <property type="entry name" value="Citrt_syn/SCS-alpha_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005810">
        <property type="entry name" value="CoA_lig_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005811">
        <property type="entry name" value="SUCC_ACL_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004230">
        <property type="entry name" value="PRK05678.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01019">
        <property type="entry name" value="sucCoAalpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11117:SF2">
        <property type="entry name" value="SUCCINATE--COA LIGASE [ADP_GDP-FORMING] SUBUNIT ALPHA, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11117">
        <property type="entry name" value="SUCCINYL-COA LIGASE SUBUNIT ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02629">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00549">
        <property type="entry name" value="Ligase_CoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001553">
        <property type="entry name" value="SucCS_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01798">
        <property type="entry name" value="SCOASYNTHASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="Succinyl-CoA synthetase domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01216">
        <property type="entry name" value="SUCCINYL_COA_LIG_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00399">
        <property type="entry name" value="SUCCINYL_COA_LIG_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4 6" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4 7" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="CoA-binding" evidence="8">
        <location>
            <begin position="4"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-phosphohistidine intermediate" evidence="4 5">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="17"/>
            <end position="20"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="96"/>
            <end position="98"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared with subunit beta</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001553-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="292" mass="30225" checksum="3A9207B55F0B608E" modified="2008-05-20" version="1">MTVLVGPTTRVVVQGATGREGSFHLQRMMEYGTKIVAGVTPGKGGASVHGVPVYDTVEEAVRRHGANASVIFVPARAAAEAVLEAVDAGVELVVVITEHIPVHDALRAINYARSRGVTVIGPNCPGVVAPPVRTKLGIMPNSIYQTPGKVAVVSRSGTLTYEISYQLVRAGFGINIAVGVGGDPVVGLDLMEATLKVAEDPDVRGIVVIGEVGGDAEERLAKLYAEGAINKPVVAYIAGRTAPPGKRMGHAGAIVMMGSGDARGKIEAFKAAGVPVAETPFEVPKLLSKLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9H1</accession>
    <name>B1Y9H1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF115 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1475</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9H1"/>
    <dbReference type="STRING" id="444157.Tneu_1475"/>
    <dbReference type="KEGG" id="tne:Tneu_1475"/>
    <dbReference type="eggNOG" id="arCOG04303">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1335094_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003848">
        <property type="term" value="F:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027510">
        <property type="entry name" value="HMPDK_MptE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39648">
        <property type="entry name" value="6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39648:SF1">
        <property type="entry name" value="6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="214" mass="23879" checksum="830F3D6FFA0E14A0" modified="2008-05-20" version="1">MVNACGQTVSCKPVIYEPGEWRYVMTLVKALLPELSFHRDGEAAAAASRLGGVSIEVLRDFDWGKPAVYMPPFERVVDGTVVVAVEGYTAKKLMRRGVRADVVVSDLDFDPEAVQLGKTQVVHVHGDNFWRVGPGRRVYTVQTWPVGCTFNVSGFTDGDRAVYLAYYMGAREVDISGFYPDIPLKRDDAVKRKKLAVAQHLLARLSQRLTLRFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="36" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9I3</accession>
    <name>B1Y9I3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1488</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9I3"/>
    <dbReference type="STRING" id="444157.Tneu_1488"/>
    <dbReference type="KEGG" id="tne:Tneu_1488"/>
    <dbReference type="HOGENOM" id="CLU_661602_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="415" mass="47543" checksum="7EE76849F1D829B4" modified="2008-05-20" version="1">MRKHIEELRRKACENSYHYTAIVISNERSRLSVSTDWLSCDIIRNDAVCEERNGIKICRQERTFDYIDANYEEVIVTPELLRHNLPLRVYEDLALERVGAVNSLTNLYTPDINAIYDALKWLVELAFAEIGIAVYWEDDAFFIPANHASRLGEVVVTRKIHSILSRYIPSEVDGNRIKFEFGHITISKDSFDNYLCKFSKFDISRLNGVLKPFKDAYYGTINSLKRVDVRMKIDTYVVEIHNTYPLALTIPVTINIDGEERTYVLTAKVAENHFYADGQTEAIVRHMGSAVVRIKFAIPGVYKFSHVPHGKDDDLTNTIIIRQLIRSTPIDAQHIINNWGSIVDAVYAFGRIEVPVVLEIEGSIEDTLRKWIKDSRANQMKFDGNTVLVGTGNRSVLIRYEVHGNKVILKSFEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="35" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9I4</accession>
    <name>B1Y9I4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1489</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350832.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9I4"/>
    <dbReference type="STRING" id="444157.Tneu_1489"/>
    <dbReference type="GeneID" id="6165969"/>
    <dbReference type="KEGG" id="tne:Tneu_1489"/>
    <dbReference type="HOGENOM" id="CLU_910960_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="305" mass="35261" checksum="15B3A282F1371510" modified="2008-05-20" version="1">MNLKDWQRKLVECIAAGGWRSCSEEVRQMFDEVGLAHLDKYAWEGCRGSLCQAVTHIFLADTRMTLKVHLLRKMRELPLPELRTQLRKNYEHHRYVVIGYDGNKLFVNLATSLDPIVKREECTERGDIEICRAERDFGYIDLDFEEVIVTPEVVKRGLPLRVQGDLVLGYIRKVNDLAAIYLRTRTATIEAALRAIVELAFAEAGIAFELEPEGRYIIRVRDTNEWDTYAIAHILHNTISRYVPAKLEENRIRLEFGRIEVTIGSYNHYACTIEVFNDMSRLNGIMKTFADAYYNAINNLQRVDA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="93" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9L4</accession>
    <name>SRP54_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Signal recognition particle 54 kDa protein</fullName>
            <shortName evidence="1">SRP54</shortName>
            <ecNumber evidence="1">3.6.5.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">srp54</name>
        <name type="ordered locus">Tneu_1519</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>GTP + H2O = GDP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="3.6.5.4"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. Archaeal SRP consists of a 7S RNA molecule of 300 nucleotides and two protein subunits: SRP54 and SRP19.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="1">The SRP-RNC complex is targeted to the cytoplasmic membrane.</text>
    </comment>
    <comment type="domain">
        <text evidence="1">Composed of three domains: the N-terminal N domain, which is responsible for interactions with the ribosome, the central G domain, which binds GTP, and the C-terminal M domain, which binds the RNA and the signal sequence of the RNC.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GTP-binding SRP family. SRP54 subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.4" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350862.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9L4"/>
    <dbReference type="SMR" id="B1Y9L4"/>
    <dbReference type="STRING" id="444157.Tneu_1519"/>
    <dbReference type="GeneID" id="6166059"/>
    <dbReference type="KEGG" id="tne:Tneu_1519"/>
    <dbReference type="eggNOG" id="arCOG01228">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009301_6_0_2"/>
    <dbReference type="OrthoDB" id="52849at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048500">
        <property type="term" value="C:signal recognition particle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008312">
        <property type="term" value="F:7S RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006614">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd17875">
        <property type="entry name" value="SRP54_G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000022">
        <property type="entry name" value="Signal recognition particle 54 kDa subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.140">
        <property type="entry name" value="Signal recognition particle SRP54, nucleotide-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.30">
        <property type="entry name" value="Signal recognition particle, SRP54 subunit, M-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00306">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036891">
        <property type="entry name" value="Signal_recog_part_SRP54_M_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013822">
        <property type="entry name" value="Signal_recog_particl_SRP54_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004125">
        <property type="entry name" value="Signal_recog_particle_SRP54_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036225">
        <property type="entry name" value="SRP/SRP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022941">
        <property type="entry name" value="SRP54"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000897">
        <property type="entry name" value="SRP54_GTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042101">
        <property type="entry name" value="SRP54_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11564">
        <property type="entry name" value="SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11564:SF5">
        <property type="entry name" value="SIGNAL RECOGNITION PARTICLE SUBUNIT SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00448">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02881">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02978">
        <property type="entry name" value="SRP_SPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00962">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00963">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47364">
        <property type="entry name" value="Domain of the SRP/SRP receptor G-proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47446">
        <property type="entry name" value="Signal peptide-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0342">GTP-binding</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0733">Signal recognition particle</keyword>
    <feature type="chain" id="PRO_1000119522" description="Signal recognition particle 54 kDa protein">
        <location>
            <begin position="1"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="106"/>
            <end position="113"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="186"/>
            <end position="190"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="244"/>
            <end position="247"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00306"/>
        </source>
    </evidence>
    <sequence length="433" mass="47996" checksum="51A61669F5AE0D7F" modified="2008-05-20" version="1">MKALSEVFGKLVEKIRGVSYIDEATLQDLSREIQRALLKADVPLDMVKAFTDAAVKRIKEEKPPAGIPPREYLLYVLYEELVKLLGGEQPPEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKLLVKRGYKVGLVETDTVRPAAFDQLRQLAEKIGVPFYGERDGKDAVEIARRGVQNLKNLDVVIVDTAGRHRNEEALLQEVKAIYEAVSPDEVVLVIDATVGKLAAAQAEAFMRYLPIHSVIITKMDSTARGGGALAAVAKTGAKVKFIGVGEDVDELEMFIPRKFVARVLGMGDLDALVERIKAVFEEEQVIQEIESGKLDLLTFKKQIDGLLKLGPLSKVFQMLPGGLAAKISEEQIELSQKNLKKWRAILSSMTVEELKNPELLNASRIRRIALGAGVTPRDVKEMLTVYENLKRMSKTLKRQLRMKMPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Q7</accession>
    <name>B1Y9Q7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Phosphomannomutase</fullName>
            <ecNumber evidence="12">5.4.2.8</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0021</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <dbReference type="EC" id="5.4.2.8" evidence="12"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349401.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Q7"/>
    <dbReference type="STRING" id="444157.Tneu_0021"/>
    <dbReference type="GeneID" id="6165062"/>
    <dbReference type="KEGG" id="tne:Tneu_0021"/>
    <dbReference type="eggNOG" id="arCOG00767">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016950_9_1_2"/>
    <dbReference type="OrthoDB" id="10363at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004615">
        <property type="term" value="F:phosphomannomutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03089">
        <property type="entry name" value="PMM_PGM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.120.10">
        <property type="entry name" value="Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.310.50">
        <property type="entry name" value="Alpha-D-phosphohexomutase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005844">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005843">
        <property type="entry name" value="A-D-PHexomutase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036900">
        <property type="entry name" value="A-D-PHexomutase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016066">
        <property type="entry name" value="A-D-PHexomutase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005841">
        <property type="entry name" value="Alpha-D-phosphohexomutase_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43771">
        <property type="entry name" value="PHOSPHOMANNOMUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43771:SF1">
        <property type="entry name" value="PHOSPHOMANNOMUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02878">
        <property type="entry name" value="PGM_PMM_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00408">
        <property type="entry name" value="PGM_PMM_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00509">
        <property type="entry name" value="PGMPMM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55957">
        <property type="entry name" value="Phosphoglucomutase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="Phosphoglucomutase, first 3 domains"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00710">
        <property type="entry name" value="PGM_PMM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha-D-phosphohexomutase alpha/beta/alpha" evidence="9">
        <location>
            <begin position="3"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="Alpha-D-phosphohexomutase alpha/beta/alpha" evidence="10">
        <location>
            <begin position="143"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="Alpha-D-phosphohexomutase alpha/beta/alpha" evidence="11">
        <location>
            <begin position="244"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="domain" description="Alpha-D-phosphohexomutase C-terminal" evidence="8">
        <location>
            <begin position="358"/>
            <end position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB38979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="429" mass="47639" checksum="C1C7FB0D489E9F28" modified="2008-05-20" version="1">MTVFKAYDIRGVVDRELTMELVEKIGVAISKFFGGEDVVVGMDVRTHSFRIAEALSRGLLSSSNVVFIGTSTTPVTHYASYVLNKPAVMITASHNPPEYNGMKIMRPGGRDLESHEIQQLASMLETPPPAGRGVVYVRDMLSRYIDHYAEIFGKLDLSVGFDPANAAGVLLKPLLERAFKNVAAINDRPDGRFPAHLPDPEKAENLAQLQKLVVEKRLDVGIALDGDCDRVGLVTAEGRIFRPEKMVYALLNYYAKPGDVVVLDVTMPLYLEKVAEERGVKVVRQRVGHSFQKPTAAKHGAIFWAEYSGHIGFRENNYFDDGIYAALKILKTVAEAGTTLDRVLEEAPKVYEERIDLRVGDPRRAVEEAKRRASGLEFYELDGIDVRTAEGRLLIRPSNTEPLLRVKMESGTKEGLERLRSLLGQLISA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9V2</accession>
    <name>RS28_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein eS28</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">30S ribosomal protein S28e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps28e</name>
        <name type="ordered locus">Tneu_1578</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eS28 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350921.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="PDB" id="9E7F">
        <property type="method" value="EM"/>
        <property type="resolution" value="2.53 A"/>
        <property type="chains" value="BZ=1-77"/>
    </dbReference>
    <dbReference type="PDBsum" id="9E7F"/>
    <dbReference type="AlphaFoldDB" id="B1Y9V2"/>
    <dbReference type="EMDB" id="EMD-47668"/>
    <dbReference type="SMR" id="B1Y9V2"/>
    <dbReference type="STRING" id="444157.Tneu_1578"/>
    <dbReference type="GeneID" id="6166088"/>
    <dbReference type="KEGG" id="tne:Tneu_1578"/>
    <dbReference type="eggNOG" id="arCOG04314">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_178987_2_1_2"/>
    <dbReference type="OrthoDB" id="7620at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030490">
        <property type="term" value="P:maturation of SSU-rRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000028">
        <property type="term" value="P:ribosomal small subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04457">
        <property type="entry name" value="S1_S28E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.50.140:FF:000145">
        <property type="entry name" value="30S ribosomal protein S28e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00292">
        <property type="entry name" value="Ribosomal_eS28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000289">
        <property type="entry name" value="Ribosomal_eS28"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028626">
        <property type="entry name" value="Ribosomal_eS28_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003080">
        <property type="entry name" value="PRK04007.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10769">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10769:SF3">
        <property type="entry name" value="SMALL RIBOSOMAL SUBUNIT PROTEIN ES28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01200">
        <property type="entry name" value="Ribosomal_S28e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00961">
        <property type="entry name" value="RIBOSOMAL_S28E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="evidence at protein level"/>
    <keyword id="KW-0002">3D-structure</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000115087" description="Small ribosomal subunit protein eS28">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="77" mass="8533" checksum="4568AA85985C8B05" modified="2008-05-20" version="1">MAEEVKFSPYEDAVAGLVVQILGRTGVAGEVTQVKIKVLEGRDKGRVLTRNVKGPVRLGDIVMLRETEREARRITAR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9V4</accession>
    <name>RL7A_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein eL8</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L7Ae</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Ribosomal protein L8e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl7ae</name>
        <name type="ordered locus">Tneu_1580</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit. Probably part of the RNase P complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL8 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350923.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9V4"/>
    <dbReference type="SMR" id="B1Y9V4"/>
    <dbReference type="STRING" id="444157.Tneu_1580"/>
    <dbReference type="GeneID" id="6166068"/>
    <dbReference type="KEGG" id="tne:Tneu_1580"/>
    <dbReference type="eggNOG" id="arCOG01751">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084513_4_0_2"/>
    <dbReference type="OrthoDB" id="25810at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004526">
        <property type="term" value="F:ribonuclease P activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042254">
        <property type="term" value="P:ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001682">
        <property type="term" value="P:tRNA 5'-leader removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1330.30:FF:000020">
        <property type="entry name" value="50S ribosomal protein L7Ae"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00326">
        <property type="entry name" value="Ribosomal_eL8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050257">
        <property type="entry name" value="eL8/uL1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="Ribosomal_eL30-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004037">
        <property type="entry name" value="Ribosomal_eL8-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004038">
        <property type="entry name" value="Ribosomal_eL8/eL30/eS12/Gad45"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018492">
        <property type="entry name" value="Ribosomal_eL8/Nhp2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022481">
        <property type="entry name" value="Ribosomal_eL8_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03677">
        <property type="entry name" value="eL8_ribo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23105">
        <property type="entry name" value="RIBOSOMAL PROTEIN L7AE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01248">
        <property type="entry name" value="Ribosomal_L7Ae"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00881">
        <property type="entry name" value="L7ARS6FAMILY"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00884">
        <property type="entry name" value="RIBOSOMALHS6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="L30e-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01082">
        <property type="entry name" value="RIBOSOMAL_L7AE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <feature type="chain" id="PRO_1000116098" description="Large ribosomal subunit protein eL8">
        <location>
            <begin position="1"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="151" mass="15991" checksum="3F5CDEE067BB88C6" modified="2008-05-20" version="1">MAVTIDPKTFYANPPPGKPFYVRFEVPADVAEKALEVLSVAKQTGKIKKGTNEATKAVERGLAKLVLIAEDVDPPEVVAHLPLLCEEKKVPYVYVPSKEKLGKAAGINVSAAAAVVIEPGQAAGELEALVSKVNEIRAKNGLNAIPLPGRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Y7</accession>
    <name>B1Y9Y7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Histidine triad (HIT) protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1614</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350956.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Y7"/>
    <dbReference type="STRING" id="444157.Tneu_1614"/>
    <dbReference type="GeneID" id="6165809"/>
    <dbReference type="KEGG" id="tne:Tneu_1614"/>
    <dbReference type="eggNOG" id="arCOG00419">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056776_3_3_2"/>
    <dbReference type="OrthoDB" id="26806at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01277">
        <property type="entry name" value="HINT_subgroup"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="entry name" value="HIT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039384">
        <property type="entry name" value="HINT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019808">
        <property type="entry name" value="Histidine_triad_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001310">
        <property type="entry name" value="Histidine_triad_HIT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011146">
        <property type="entry name" value="HIT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46648:SF1">
        <property type="entry name" value="ADENOSINE 5'-MONOPHOSPHORAMIDASE HNT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46648">
        <property type="entry name" value="HIT FAMILY PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01230">
        <property type="entry name" value="HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00332">
        <property type="entry name" value="HISTRIAD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="HIT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00892">
        <property type="entry name" value="HIT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51084">
        <property type="entry name" value="HIT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HIT" evidence="4">
        <location>
            <begin position="4"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Histidine triad motif" evidence="2 3">
        <location>
            <begin position="95"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-AMP-histidine intermediate" evidence="1">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR601310-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR601310-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="139" mass="15853" checksum="63C20FFFA5520B00" modified="2008-05-20" version="1">MDCIFCRIVRGEAPAWKVYEDEDFVVILDKYPASYGHLLVVSREHYVNILDAPLEKAARGFEIATRLAKAWARLGAPAVNVVTNAGREAGQMVFHMHIHVIPRWGGNLAWHGREEIKEKEAREVVEKLTSILPEYFKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Z1</accession>
    <name>B1Y9Z1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Signal transduction protein with CBS domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1618</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350960.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Z1"/>
    <dbReference type="STRING" id="444157.Tneu_1618"/>
    <dbReference type="GeneID" id="6165774"/>
    <dbReference type="KEGG" id="tne:Tneu_1618"/>
    <dbReference type="eggNOG" id="arCOG00602">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_431909_0_0_2"/>
    <dbReference type="OrthoDB" id="8919at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd02205">
        <property type="entry name" value="CBS_pair_SF"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="entry name" value="CBS-domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051257">
        <property type="entry name" value="Diverse_CBS-Domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080:SF26">
        <property type="entry name" value="REGULATORY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="CBS-domain pair"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="86"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="240"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="337"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="428"/>
            <end position="487"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="656" mass="72171" checksum="7191C1F236165F74" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA32</accession>
    <name>IDI2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Isopentenyl-diphosphate delta-isomerase</fullName>
            <shortName evidence="1">IPP isomerase</shortName>
            <ecNumber evidence="1">5.3.3.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Isopentenyl diphosphate:dimethylallyl diphosphate isomerase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Isopentenyl pyrophosphate isomerase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Type 2 isopentenyl diphosphate isomerase</fullName>
            <shortName evidence="1">IDI-2</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">fni</name>
        <name type="ordered locus">Tneu_0048</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>isopentenyl diphosphate = dimethylallyl diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23284"/>
            <dbReference type="ChEBI" id="CHEBI:57623"/>
            <dbReference type="ChEBI" id="CHEBI:128769"/>
            <dbReference type="EC" id="5.3.3.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>NADPH</name>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homooctamer. Dimer of tetramers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the IPP isomerase type 2 family.</text>
    </comment>
    <dbReference type="EC" id="5.3.3.2" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349427.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA32"/>
    <dbReference type="SMR" id="B1YA32"/>
    <dbReference type="STRING" id="444157.Tneu_0048"/>
    <dbReference type="GeneID" id="6164561"/>
    <dbReference type="KEGG" id="tne:Tneu_0048"/>
    <dbReference type="eggNOG" id="arCOG00613">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065515_1_0_2"/>
    <dbReference type="OrthoDB" id="371955at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004452">
        <property type="term" value="F:isopentenyl-diphosphate delta-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070402">
        <property type="term" value="F:NADPH binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02811">
        <property type="entry name" value="IDI-2_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00354">
        <property type="entry name" value="Idi_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000262">
        <property type="entry name" value="FMN-dep_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011179">
        <property type="entry name" value="IPdP_isomerase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02151">
        <property type="entry name" value="IPP_isom_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43665">
        <property type="entry name" value="ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43665:SF1">
        <property type="entry name" value="ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01070">
        <property type="entry name" value="FMN_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003314">
        <property type="entry name" value="IPP_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51395">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0285">Flavoprotein</keyword>
    <keyword id="KW-0288">FMN</keyword>
    <keyword id="KW-0413">Isomerase</keyword>
    <keyword id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0521">NADP</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000120547" description="Isopentenyl-diphosphate delta-isomerase">
        <location>
            <begin position="1"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="6"/>
            <end position="7"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="63"/>
            <end position="65"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="93"/>
            <end position="95"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="273"/>
            <end position="275"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="294"/>
            <end position="295"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00354"/>
        </source>
    </evidence>
    <sequence length="354" mass="37618" checksum="FBC11376B6808F51" modified="2008-05-20" version="1">MEIDRRKNDHIYLASSEISQVGSPWFDEVILIHNALPELDLSEVDTTAKFLGAEVKAPFGIGAMTGGTELAGKINAELAKAAEAFGIPIYVGSQRIALVKPEVRWTFEVVKKNAPTVPKVANLGAPQLVELDEVKLAEWVSQAVDMVDAHAVAIHLNAAQEAVQPEGEPRFRGVLEKIKVVKRAAGRPLIVKEVGNGISREVAARLAGVADAIDVGGYGGTSFIAIEGARAAGAGAQLRRRIAETFKLWGIPTAASICEAKSGYGGYIIASGGIRSGLDGVKALALGASFFTMSQPLLKAALEGRLKEEIETVVAEVKTAMFLIGARTVKDIASAPRVYGPRLRSWLEQRGLTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA48</accession>
    <name>B1YA48_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0064</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349443.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="STRING" id="444157.Tneu_0064"/>
    <dbReference type="GeneID" id="6164688"/>
    <dbReference type="KEGG" id="tne:Tneu_0064"/>
    <dbReference type="eggNOG" id="arCOG03265">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_227455_0_0_2"/>
    <dbReference type="OrthoDB" id="30872at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="2639"/>
            <end position="2660"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="2676" mass="293906" checksum="96CFA133E24C0C7B" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA56</accession>
    <name>B1YA56_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleotidyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0072</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349451.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA56"/>
    <dbReference type="STRING" id="444157.Tneu_0072"/>
    <dbReference type="GeneID" id="6164947"/>
    <dbReference type="KEGG" id="tne:Tneu_0072"/>
    <dbReference type="eggNOG" id="arCOG00663">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029499_2_0_2"/>
    <dbReference type="OrthoDB" id="15372at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04181">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050486">
        <property type="entry name" value="Mannose-1P_guanyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22572">
        <property type="entry name" value="SUGAR-1-PHOSPHATE GUANYL TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Nucleotidyl transferase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="225" mass="25178" checksum="ADAE454D66E7AD3A" modified="2008-05-20" version="1">MKAVVLAAGLGTRLRPLTFLVPKALATVGTKPLVDYVIEWLRLNGVREIAVVGYYMQDVLERYLAQFHPDVVFLRSRKLLGTAGQLYYARDWVDGDAAVVNTDVLTNLDLRAPAELHRSRQALLTVVGQIHRVSLRFGVLEVEGGMLRSWREKPTLEYITSTGIYIVSEGVVKRLGEEYLDMDALARSLIPRVAVYVAKEAFFYDVGTIEDLSKAQEVKLDGLKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA72</accession>
    <name>B1YA72_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molybdopterin binding domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0088</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349467.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA72"/>
    <dbReference type="STRING" id="444157.Tneu_0088"/>
    <dbReference type="GeneID" id="6165597"/>
    <dbReference type="KEGG" id="tne:Tneu_0088"/>
    <dbReference type="eggNOG" id="arCOG00215">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030805_0_5_2"/>
    <dbReference type="OrthoDB" id="372037at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00885">
        <property type="entry name" value="cinA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="entry name" value="MoaB/Mog-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050101">
        <property type="entry name" value="CinA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00177">
        <property type="entry name" value="molyb_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002291">
        <property type="entry name" value="PRK01215.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13939">
        <property type="entry name" value="NICOTINAMIDE-NUCLEOTIDE AMIDOHYDROLASE PNCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13939:SF0">
        <property type="entry name" value="NMN AMIDOHYDROLASE-LIKE PROTEIN YFAY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="Molybdenum cofactor biosynthesis proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoaB/Mog" evidence="1">
        <location>
            <begin position="7"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="271" mass="29579" checksum="EC2E9BE4A5668F5C" modified="2008-05-20" version="1">MHKGAAWIVTVGNELLIGRVVNTNASWLAGRLTYLGYAVRRIVTVPDVEEDIAEVFREALARADVVVSTGGLGPTPDDITNIAFCRALGVDPAVNEEALRMVEERYRSRGYPLTPERVKMAQMPPGARPLPNPVGTAPGVLYEAGGKVVVLLPGVPREMEAIFEGYVEPLLKSRGPPVFFAERGLEVRGVPEADVAPIIREVLRLDPRIYVKSHPRGREVEAPLLYIHVYASAFDRGEADRLVDAAVGRLVQLLKARFGGAVSISEERRLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAC7</accession>
    <name>B1YAC7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Large ribosomal subunit protein uL10</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Acidic ribosomal protein P0 homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpl10</name>
        <name evidence="6" type="synonym">rplP0</name>
        <name evidence="9" type="ordered locus">Tneu_1654</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 50S ribosomal subunit. Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Forms a heptameric L10(L12)2(L12)2(L12)2 complex, where L10 forms an elongated spine to which the L12 dimers bind in a sequential fashion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the universal ribosomal protein uL10 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350995.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAC7"/>
    <dbReference type="STRING" id="444157.Tneu_1654"/>
    <dbReference type="GeneID" id="6165435"/>
    <dbReference type="KEGG" id="tne:Tneu_1654"/>
    <dbReference type="eggNOG" id="arCOG04288">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053173_0_0_2"/>
    <dbReference type="OrthoDB" id="30930at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002181">
        <property type="term" value="P:cytoplasmic translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000027">
        <property type="term" value="P:ribosomal large subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd05795">
        <property type="entry name" value="Ribosomal_P0_L10e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.105.20:FF:000001">
        <property type="entry name" value="60S acidic ribosomal protein P0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.105.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00280">
        <property type="entry name" value="Ribosomal_uL10_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050323">
        <property type="entry name" value="Ribosomal_protein_uL10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001790">
        <property type="entry name" value="Ribosomal_uL10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040637">
        <property type="entry name" value="Ribosomal_uL10-like_insert"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043164">
        <property type="entry name" value="Ribosomal_uL10-like_insert_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043141">
        <property type="entry name" value="Ribosomal_uL10-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022909">
        <property type="entry name" value="Ribosomal_uL10_arc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45699">
        <property type="entry name" value="60S ACIDIC RIBOSOMAL PROTEIN P0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45699:SF3">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00466">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17777">
        <property type="entry name" value="RL10P_insert"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160369">
        <property type="entry name" value="Ribosomal protein L10-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Large ribosomal subunit protein uL10-like insertion" evidence="8">
        <location>
            <begin position="118"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="300"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="7">
        <location>
            <begin position="300"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="316"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="341" mass="37491" checksum="109E87EED7332BF9" modified="2008-05-20" version="1">MITLGKRRYVRSRPHPQRKTRIVEEATELLKKYQYVFLFDLHGLSSRILNEYRYRLRRYGEVKVIKPTLFKIAFAKAFGGVPAEVAERVRGEVAFFFTNVNPAEVVKIVAENSVRRAAQPGDKAPFDIVVPAGPTNASPGPIISKFGKLKIPTRVQEGKIWIAKDTVVAKAGQEITAEIAEVLRVVGIEPVFEQLRLLGVIWRGSRYVDISELVIDVGRYRELFEAAAVYARNLALNIVYPTREVLQVVIPAAHMRAVALAAKLGVVTRETLPILLSRAVAEANALAAAVAPKAPELGLSVQQAAPQQQAAPQAEAPKEAQEEKREGPSEEDVAGSLASLF</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAF6</accession>
    <name>PRIS_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA primase small subunit PriS</fullName>
            <ecNumber evidence="1">2.7.7.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">priS</name>
        <name type="synonym">priA</name>
        <name type="ordered locus">Tneu_1683</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterodimer of a small subunit (PriS) and a large subunit (PriL).</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic-type primase small subunit family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.-" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351024.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAF6"/>
    <dbReference type="SMR" id="B1YAF6"/>
    <dbReference type="STRING" id="444157.Tneu_1683"/>
    <dbReference type="GeneID" id="6165219"/>
    <dbReference type="KEGG" id="tne:Tneu_1683"/>
    <dbReference type="eggNOG" id="arCOG04110">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056123_0_0_2"/>
    <dbReference type="OrthoDB" id="31125at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006269">
        <property type="term" value="P:DNA replication, synthesis of primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04860">
        <property type="entry name" value="AE_Prim_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.920.10">
        <property type="entry name" value="DNA primase, PRIM domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00700">
        <property type="entry name" value="DNA_primase_sml_arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002755">
        <property type="entry name" value="DNA_primase_S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014052">
        <property type="entry name" value="DNA_primase_ssu_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023639">
        <property type="entry name" value="DNA_primase_ssu_PriS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00335">
        <property type="entry name" value="primase_sml"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10536">
        <property type="entry name" value="DNA PRIMASE SMALL SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01896">
        <property type="entry name" value="DNA_primase_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56747">
        <property type="entry name" value="Prim-pol domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0235">DNA replication</keyword>
    <keyword id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0464">Manganese</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword id="KW-0639">Primosome</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0804">Transcription</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000132349" description="DNA primase small subunit PriS">
        <location>
            <begin position="1"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00700"/>
        </source>
    </evidence>
    <sequence length="312" mass="35688" checksum="8B70F09E559713B2" modified="2008-05-20" version="1">MIVEVFFRNYYRNYAKFDVDAVEKREFAFQPFGGGMVRHKAFKSVEELRRFAVEKTPRHMYHSSAYYERPDEGDMERKGWLGADLIFDIDGDHLDTEACRESKLVSIACLNDAREEANKLLDVLTRELGLKPRRIVFSGNRGFHVHVADEEVLALGARERRELVNYLKAAGFDPTRFAAKLGRRKVLLYEEEVEGNLLRIRQGVEDPRALKVEIDEVVTQDIHRLIRLPGSLNGKTGLAALPLTQQDLEKDAGEIVEKAVAFRKGNLKVRFTKDLRGPVLFDRIDAGEGDVKVLPAYLAIYLELQDFGKIYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAK2</accession>
    <name>B1YAK2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1733</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351070.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAK2"/>
    <dbReference type="STRING" id="444157.Tneu_1733"/>
    <dbReference type="GeneID" id="6164893"/>
    <dbReference type="KEGG" id="tne:Tneu_1733"/>
    <dbReference type="eggNOG" id="arCOG07060">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_179021_0_0_2"/>
    <dbReference type="OrthoDB" id="27203at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="101" mass="11559" checksum="3A5B0647E84B0931" modified="2008-05-20" version="1">MATFRCPICGREVKIELRIDKEPVGGLHEVLVQHESHYVKVYIDRQGVVRRAFPVEHFTSVDPPLYTVYIFEDRAEIVDGRGHVYVVEPNQLAEVVKKLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAL2</accession>
    <name>B1YAL2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Carbamoyl phosphate synthase small chain</fullName>
            <ecNumber evidence="8">6.3.5.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Carbamoyl phosphate synthetase glutamine chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">carA</name>
        <name evidence="10" type="ordered locus">Tneu_0134</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Small subunit of the glutamine-dependent carbamoyl phosphate synthetase (CPSase). CPSase catalyzes the formation of carbamoyl phosphate from the ammonia moiety of glutamine, carbonate, and phosphate donated by ATP, constituting the first step of 2 biosynthetic pathways, one leading to arginine and/or urea and the other to pyrimidine nucleotides. The small subunit (glutamine amidotransferase) binds and cleaves glutamine to supply the large subunit with the substrate ammonia.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-glutamine + H2O = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 8">
            <text>hydrogencarbonate + L-glutamine + 2 ATP + H2O = carbamoyl phosphate + L-glutamate + 2 ADP + phosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:18633"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate. Tetramer of heterodimers (alpha,beta)4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the CarA family.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.5" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349512.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAL2"/>
    <dbReference type="STRING" id="444157.Tneu_0134"/>
    <dbReference type="MEROPS" id="C26.A33"/>
    <dbReference type="GeneID" id="6164821"/>
    <dbReference type="KEGG" id="tne:Tneu_0134"/>
    <dbReference type="eggNOG" id="arCOG00064">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035901_1_1_2"/>
    <dbReference type="OrthoDB" id="7675at2157"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00171"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004088">
        <property type="term" value="F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:L-arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01744">
        <property type="entry name" value="GATase1_CPSase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.20">
        <property type="entry name" value="Carbamoyl-phosphate synthase small subunit, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01209">
        <property type="entry name" value="CPSase_S_chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050472">
        <property type="entry name" value="Anth_synth/Amidotransfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006274">
        <property type="entry name" value="CarbamoylP_synth_ssu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002474">
        <property type="entry name" value="CarbamoylP_synth_ssu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036480">
        <property type="entry name" value="CarbP_synth_ssu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035686">
        <property type="entry name" value="CPSase_GATase1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01368">
        <property type="entry name" value="CPSaseIIsmall"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009475">
        <property type="entry name" value="PRK12838.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43418:SF7">
        <property type="entry name" value="CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43418">
        <property type="entry name" value="MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00988">
        <property type="entry name" value="CPSase_sm_chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00097">
        <property type="entry name" value="ANTSNTHASEII"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00099">
        <property type="entry name" value="CPSGATASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00096">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01097">
        <property type="entry name" value="CPSase_sm_chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52021">
        <property type="entry name" value="Carbamoyl phosphate synthetase, small subunit N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="Class I glutamine amidotransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51273">
        <property type="entry name" value="GATASE_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 8" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="3 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carbamoyl-phosphate synthase small subunit N-terminal" evidence="9">
        <location>
            <begin position="1"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="CPSase" evidence="8">
        <location>
            <begin position="1"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="8">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="325"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="327"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="214"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="246"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="285"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="287"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="288"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00048816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM01097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="352" mass="38664" checksum="ED26CAD3110F6C25" modified="2008-05-20" version="1">MSYLVLEDGSVFVGRQIGAEKTAVGEVVFTTAVVGYPQVLTDPSYRGQIVAFTMPLIGNYGVSEDQLESDGVKAEGVVVFEATAPSHYKSVMSLDEWLKAEGVPGIARVDTRALAIKLREYGVMMGALGPEEPEELLRRLRSSPRYDEVNYVDLVSVKEPRELGDGKLCIGVVDCGIKRSIVSEFLKRGVRIKLVPCRAPELAFDCDGLFLSNGPGNPKLLGSLAEKVREYAEYKKPLTGICLGHQVIALAMGAGVYKLKFGHRASNKPVRDLRFTGKTYITVHNHGYAVDPKDSGLKVWAVQPDDGTVEGLYHESLPILTTQFHPEASPGPQDTRWIFDMFVKLIQRHAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAM3</accession>
    <name>B1YAM3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAD dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0145</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349523.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAM3"/>
    <dbReference type="STRING" id="444157.Tneu_0145"/>
    <dbReference type="GeneID" id="6164968"/>
    <dbReference type="KEGG" id="tne:Tneu_0145"/>
    <dbReference type="eggNOG" id="arCOG02231">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046973_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028348">
        <property type="entry name" value="FAD-binding_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049516">
        <property type="entry name" value="FAD-depend_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43106">
        <property type="entry name" value="DEHYDROGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43106:SF1">
        <property type="entry name" value="DEHYDROGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21688">
        <property type="entry name" value="FAD-depend_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038984">
        <property type="entry name" value="FAD_binding_protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00368">
        <property type="entry name" value="FADPNR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD/NAD(P)-binding" evidence="1">
        <location>
            <begin position="19"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="FAD-dependent protein C-terminal" evidence="2">
        <location>
            <begin position="270"/>
            <end position="425"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="482" mass="52272" checksum="604FC553B2AEC6CD" modified="2008-05-20" version="1">MVTQYLSRLRTLDRYVGDYDVVIVGAGPAGLFAALELAKAGGLRTALIDGGYRASQRHCPLQTPLEKCTFCVPCHIVYGIGGAGTLSSGLINLRPDVGGDLHELVGDWDKAMELINYVDKTFVEFGAPGNVYEPQMELIQKLSALAARVNARIVPIRQRHMGTDGSRAVVENMTQYLEKSGVAVMYATWALDVEKGGNGLFTVKTTRGVLNARAVLLAPGRGGAEWLISQMRKLGASLDFGPIDIGVRVEVPYHVMKPLTDAVHDPKVILYTSKHDDKVRTFCTNPRGFVVKEVYADGTVGVNGETYLEKKSENTNFAFLVTLRLTDPMEDTIEYGKSIARIATKLGGGKPLIQRLYDLERGQRSTWDRIRRSSISPTLKDVTPGDISLALPHRVVEDIIEGLKKLDELAPGVASPQTLIYAPEIKYYSARPKVDKNLMTTVPGLFVAGDGAGLSRGINVAAATGVLAARGILAYLGWAKTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAN5</accession>
    <name>B1YAN5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 15">tRNA-splicing ligase RtcB</fullName>
            <ecNumber evidence="15">6.5.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="primary">rtcB</name>
        <name evidence="16" type="ordered locus">Tneu_0157</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Essential for tRNA splicing and maturation. Acts by directly joining spliced tRNA halves to mature-sized tRNAs. Joins RNA with 2',3'-cyclic-phosphate or 3'-phosphate ends to RNA with 5'-hydroxy ends.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>a 3'-end 2',3'-cyclophospho-ribonucleotide-RNA + a 5'-end dephospho-ribonucleoside-RNA + GTP + H2O = a ribonucleotidyl-ribonucleotide-RNA + GMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:68080"/>
            <dbReference type="Rhea" id="RHEA-COMP:10464"/>
            <dbReference type="Rhea" id="RHEA-COMP:13936"/>
            <dbReference type="Rhea" id="RHEA-COMP:17355"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:83064"/>
            <dbReference type="ChEBI" id="CHEBI:138284"/>
            <dbReference type="ChEBI" id="CHEBI:173118"/>
            <dbReference type="EC" id="6.5.1.8"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>a 3'-end 3'-phospho-ribonucleotide-RNA + a 5'-end dephospho-ribonucleoside-RNA + GTP = a ribonucleotidyl-ribonucleotide-RNA + GMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:68076"/>
            <dbReference type="Rhea" id="RHEA-COMP:10463"/>
            <dbReference type="Rhea" id="RHEA-COMP:13936"/>
            <dbReference type="Rhea" id="RHEA-COMP:17355"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:83062"/>
            <dbReference type="ChEBI" id="CHEBI:138284"/>
            <dbReference type="ChEBI" id="CHEBI:173118"/>
            <dbReference type="EC" id="6.5.1.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14 15">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="14 15">Binds 2 manganese ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 15">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 15">Belongs to the RtcB family.</text>
    </comment>
    <dbReference type="EC" id="6.5.1.-" evidence="15"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349535.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAN5"/>
    <dbReference type="STRING" id="444157.Tneu_0157"/>
    <dbReference type="GeneID" id="6164784"/>
    <dbReference type="KEGG" id="tne:Tneu_0157"/>
    <dbReference type="eggNOG" id="arCOG04246">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022279_0_1_2"/>
    <dbReference type="OrthoDB" id="9887at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003972">
        <property type="term" value="F:RNA ligase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0170057">
        <property type="term" value="F:RNA ligase (GTP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006388">
        <property type="term" value="P:tRNA splicing, via endonucleolytic cleavage and ligation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.1860.10:FF:000001">
        <property type="entry name" value="tRNA-splicing ligase RtcB homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1860.10">
        <property type="entry name" value="tRNA-splicing ligase RtcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001233">
        <property type="entry name" value="RtcB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036025">
        <property type="entry name" value="RtcB-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11118">
        <property type="entry name" value="RNA-SPLICING LIGASE RTCB HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11118:SF1">
        <property type="entry name" value="RNA-SPLICING LIGASE RTCB HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01139">
        <property type="entry name" value="RtcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103365">
        <property type="entry name" value="Hypothetical protein PH1602"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 13" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 15" id="KW-0436">Ligase</keyword>
    <keyword evidence="7 14 15" id="KW-0464">Manganese</keyword>
    <keyword evidence="4 14 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="GMP-histidine intermediate" evidence="12">
        <location>
            <position position="407"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="204"/>
            <end position="208"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="330"/>
            <end position="331"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="330"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="381"/>
            <end position="384"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="388"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="407"/>
            <end position="410"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="483"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00045316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00049514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR601233-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR601233-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR601233-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU371113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ACB39114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="484" mass="53691" checksum="DDDC7104D7403C0C" modified="2008-05-20" version="1">MRNIPINKVSDYVWEIPPGVKPCQKVPVRIYADSALLEKMKADLTIEQGINVGCLPGIYKHSIILPDGHQGYGFPIGGVAAIDAEEGVISPGGIGYDINCGVRVLRTNLTEEEVRPKLKELVDTIFRLVPPGVGGTGHLRLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIEERGSWKLADPSKVSEKAKARGRDQLGTLGSGNHFLEIQVVDKIFDEKIAKTFGIEREGQVVVMIHTGSRGFGHQVATDYLLVMERNMRRWGLNLPDRELAAAPLKDRVAEDYIKAMASAANFAWTNRHIIMHWVREAFKKVFGSIEKVGLEIVYDVAHNIAKLEEHVVDDKGTVRKVWVHRKGATRAFPPGRQEIPAKYRQVGQPVLIPGSMGTASWILVGTPEAMRLTFGTAPHGAGRVLSREAAIRMYPPHKVQEEMAKRGIIVRSAETEVISEEAPWAYKDVDRVVETAHQVGFAKKVVRQRPIGVVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAQ4</accession>
    <name>B1YAQ4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0177</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349554.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAQ4"/>
    <dbReference type="STRING" id="444157.Tneu_0177"/>
    <dbReference type="GeneID" id="6164644"/>
    <dbReference type="KEGG" id="tne:Tneu_0177"/>
    <dbReference type="eggNOG" id="arCOG01605">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139698_1_1_2"/>
    <dbReference type="OrthoDB" id="23478at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016625">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011898">
        <property type="entry name" value="PorD_KorD"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02179">
        <property type="entry name" value="PorD_KorD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43724">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43724:SF1">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14697">
        <property type="entry name" value="Fer4_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="8">
        <location>
            <begin position="32"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="8">
        <location>
            <begin position="72"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="103" mass="11543" checksum="88BFCC5423115B5E" modified="2008-05-20" version="1">MTLPKATELPIGAVIPEPGSTRRNTTAGWRTLRPVINDERCVRCQLCWLYCPEGTIVEKKGVFKVGGRTYDVRYEINYDYCKGCGICANECPTKAIEMVPETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAU3</accession>
    <name>B1YAU3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0217</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349593.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAU3"/>
    <dbReference type="STRING" id="444157.Tneu_0217"/>
    <dbReference type="GeneID" id="6164829"/>
    <dbReference type="KEGG" id="tne:Tneu_0217"/>
    <dbReference type="eggNOG" id="arCOG05489">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1412424_0_0_2"/>
    <dbReference type="OrthoDB" id="36293at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="175" mass="20251" checksum="3C8CFBB46FD25C51" modified="2008-05-20" version="1">MGESDVVPVYAQGFYVVSPGVVNMVIIFDYLDRGQYYHKLLRRGGEELSREISTVWENMQKFMDEEVVRINGERVRPTISDVYIGLRGSPTRPYIVFIGSFPAPLRSGENIYENFYDEEVAEYDYEAVWIFPKNAEVFEWRFGGAVETPEPNILRVAVAKGVEVGGWEYIKFRIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAU6</accession>
    <name>B1YAU6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Thiamine-binding protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0220</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0045 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349596.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAU6"/>
    <dbReference type="STRING" id="444157.Tneu_0220"/>
    <dbReference type="GeneID" id="6164831"/>
    <dbReference type="KEGG" id="tne:Tneu_0220"/>
    <dbReference type="eggNOG" id="arCOG04373">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_137479_3_2_2"/>
    <dbReference type="OrthoDB" id="10763at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.930">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029756">
        <property type="entry name" value="MTH1187/YkoF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002767">
        <property type="entry name" value="Thiamine_BP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051614">
        <property type="entry name" value="UPF0045_domain"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00106">
        <property type="entry name" value="MTH1187 family thiamine-binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33777">
        <property type="entry name" value="UPF0045 PROTEIN ECM15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33777:SF1">
        <property type="entry name" value="UPF0045 PROTEIN ECM15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01910">
        <property type="entry name" value="Thiamine_BP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89957">
        <property type="entry name" value="MTH1187/YkoF-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiamine-binding protein" evidence="2">
        <location>
            <begin position="6"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="100" mass="11165" checksum="3C0AEA72B24EE7CA" modified="2008-05-20" version="1">MAKMVVSLSVVPLGTGSPSVSEYVKKATAVIRESGLRYRTGAGFTDVELDSYQQLAELLEKMEKALAEMGVQRILYTIKIDRRMDKELYIEHKIAKAEGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAW2</accession>
    <name>B1YAW2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Creatininase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1744</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351081.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAW2"/>
    <dbReference type="STRING" id="444157.Tneu_1744"/>
    <dbReference type="GeneID" id="6165224"/>
    <dbReference type="KEGG" id="tne:Tneu_1744"/>
    <dbReference type="eggNOG" id="arCOG04536">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055029_4_0_2"/>
    <dbReference type="OrthoDB" id="46121at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10310">
        <property type="entry name" value="Creatininase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024087">
        <property type="entry name" value="Creatininase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003785">
        <property type="entry name" value="Creatininase/forma_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35005:SF1">
        <property type="entry name" value="2-AMINO-5-FORMYLAMINO-6-RIBOSYLAMINOPYRIMIDIN-4(3H)-ONE 5'-MONOPHOSPHATE DEFORMYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35005">
        <property type="entry name" value="3-DEHYDRO-SCYLLO-INOSOSE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02633">
        <property type="entry name" value="Creatininase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102215">
        <property type="entry name" value="Creatininase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="209" mass="22925" checksum="396EF0411FD29D26" modified="2008-05-20" version="1">MVCVLPIGSYEQHGPHLPPTVDAEVALYIASRLAERFGGRLLPPIYYTCSDEHRAFPQTISVRCRSFLPYLEDVLRSAVEKCGRVVAVVGHGGVWEAVSLTAQQLNYELGPSVLPINVWAYAAVRDHAGTDETSVYLAIGGRLTGDMPEICEGDVSLFGKMAVDRFSKTGVVGCLKPGEVSADRGREVLEKAVQKMVERVEWWLSRCTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAX8</accession>
    <name>B1YAX8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1760</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351097.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAX8"/>
    <dbReference type="STRING" id="444157.Tneu_1760"/>
    <dbReference type="GeneID" id="6165373"/>
    <dbReference type="KEGG" id="tne:Tneu_1760"/>
    <dbReference type="eggNOG" id="arCOG05647">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1821084_0_0_2"/>
    <dbReference type="OrthoDB" id="24817at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="141" mass="15777" checksum="76731F298D867937" modified="2008-05-20" version="1">MIVVRSNHVEKLMWQLRSLIPQMESTPILLARRQVGNYVVGLGTLGYLYAALSSVLETLVEAEKMADDLKLRDYTLVVGPEESYITQAQLPEVIPPLPQPRDIPPLPKEEAELNSFGCPSQTAGMVKFCVDNVEIAYYLSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB38</accession>
    <name>B1YB38_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1821</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 9">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 9">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the HerA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351157.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB38"/>
    <dbReference type="STRING" id="444157.Tneu_1821"/>
    <dbReference type="GeneID" id="6164300"/>
    <dbReference type="KEGG" id="tne:Tneu_1821"/>
    <dbReference type="eggNOG" id="arCOG00280">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023842_2_0_2"/>
    <dbReference type="OrthoDB" id="107033at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008571">
        <property type="entry name" value="HerA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018538">
        <property type="entry name" value="HerA_barrel_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002789">
        <property type="entry name" value="HerA_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42957">
        <property type="entry name" value="HELICASE MJ1565-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42957:SF1">
        <property type="entry name" value="HELICASE MJ1565-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01935">
        <property type="entry name" value="DUF87"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09378">
        <property type="entry name" value="HAS-barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase HerA barrel" evidence="6">
        <location>
            <begin position="3"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase HerA central" evidence="5">
        <location>
            <begin position="132"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00048954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00048988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF09378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="608" mass="67559" checksum="D4BB9F3106A7714F" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB45</accession>
    <name>B1YB45_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1828</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 8">Cell membrane</location>
            <topology evidence="1 8">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351164.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB45"/>
    <dbReference type="STRING" id="444157.Tneu_1828"/>
    <dbReference type="GeneID" id="6164735"/>
    <dbReference type="KEGG" id="tne:Tneu_1828"/>
    <dbReference type="eggNOG" id="arCOG00161">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1140605_0_0_2"/>
    <dbReference type="OrthoDB" id="31404at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42929:SF1">
        <property type="entry name" value="INNER MEMBRANE ABC TRANSPORTER PERMEASE PROTEIN YDCU-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42929">
        <property type="entry name" value="INNER MEMBRANE ABC TRANSPORTER PERMEASE PROTEIN YDCU-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="41"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="76"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="107"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="170"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="214"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="42"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="243" mass="26221" checksum="64049FF741D9E43F" modified="2008-05-20" version="1">MIKKIAAVSFAVVVLLFYAPFLALGYYITEGGELRLPSLSMVASTLLLAATAAAISIAVAYPAAYYLAKRGTELEFALLTAPLWVGTLLKAYSLLVLYAVLEKTVGVALWGQPLGVLVGMVYEYLPYSLLTLYASAEKLSESPVHAARALGASRIQAFLRVELPLTLPGVAAAFILVFLFAAGEVIMPAVLGAWKVYTFGNYIWDLYFKARDIFSGSVLSLMLTGMSLLATYIVVRTIRSLSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB50</accession>
    <name>B1YB50_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Zn finger protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1833</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351169.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB50"/>
    <dbReference type="STRING" id="444157.Tneu_1833"/>
    <dbReference type="GeneID" id="58787354"/>
    <dbReference type="KEGG" id="tne:Tneu_1833"/>
    <dbReference type="eggNOG" id="arCOG05639">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3094253_0_0_2"/>
    <dbReference type="OrthoDB" id="23329at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="52" mass="5945" checksum="A84F18DCF55ABC0A" modified="2008-05-20" version="1">MGQRTVVCPNCKKPVRPVECGRRNQTKRYVVVTYCCPKCGTELLTERLEVTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB55</accession>
    <name>B1YB55_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1838</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB55"/>
    <dbReference type="STRING" id="444157.Tneu_1838"/>
    <dbReference type="KEGG" id="tne:Tneu_1838"/>
    <dbReference type="eggNOG" id="arCOG04019">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_124268_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="187" mass="20444" checksum="9DB2EBD613AB4312" modified="2008-05-20" version="1">MVVNVSEVPIHKISGLALLRIRNPYAAVVYGSLADRSVNPVGSISAALNRLVWMPKFGPPYAVVSSDVAVEKVEIEKPWLLLTAWRLGLDGGVTSVEGGKSVVEHRIYMRNPLAKVTIVVPKPARSESVFATVKNATGEAAEVLKYLGLMYARITFGEYGGRKYVIDVDPVPELENREEARQVAELL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB72</accession>
    <name>B1YB72_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0250</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349624.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB72"/>
    <dbReference type="STRING" id="444157.Tneu_0250"/>
    <dbReference type="GeneID" id="6166182"/>
    <dbReference type="KEGG" id="tne:Tneu_0250"/>
    <dbReference type="eggNOG" id="arCOG05494">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_741066_0_0_2"/>
    <dbReference type="OrthoDB" id="26686at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="374" mass="40893" checksum="0B845CB8F52CEF21" modified="2008-05-20" version="1">MVSWIDDVRKAAEVVKRGAFKAVTHGGVAHMDDVLAAALLHKHGAEAVYRLNAAEEIAKLDGDVILFDIGDAFRDALPQRFVVLDHHGVADPSEEPSTIVQVAAAVDLKPRPLVATLLHYVDLYDRFGPAVKRWSGPYGNSLNNGVAKYLAEATPTGLVKETKFLELLAEALYSRLELDIPSFAEAFKLAEKLPFADLAEKFPRTFNTLRLMLAAAKDVQTAATGKEALETGFGVDFGCYAVLAVPELEQYVAKGLERHYLEARRAAEAAASGRYTIVKGHIAAVAVEDYLPPGPIWNALQDLGVLSTEPVFIVVKDRRNPGAYTLWRPDRHANVIDFRRLQGPEVVFKHASGFLAVVKAENAEQAARYAQAQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB73</accession>
    <name>B1YB73_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0251</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349625.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB73"/>
    <dbReference type="STRING" id="444157.Tneu_0251"/>
    <dbReference type="GeneID" id="6166209"/>
    <dbReference type="KEGG" id="tne:Tneu_0251"/>
    <dbReference type="eggNOG" id="arCOG05319">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_136007_0_0_2"/>
    <dbReference type="OrthoDB" id="30774at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050508">
        <property type="entry name" value="Methyltransf_Superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42912">
        <property type="entry name" value="METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42912:SF89">
        <property type="entry name" value="PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase type 11" evidence="1">
        <location>
            <begin position="19"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="165" mass="17946" checksum="5EC5D0A953A994BB" modified="2008-05-20" version="1">MIEEIARDLEAFDLGESVLEVGAGYGSTTALLLRRGLRVCAVDIDPGAISYLRSAFKDYAEAGLLRAVLAPGESLPFKDGECDSAVSVAALHHIRDIAAALREMLRVARRLVVVYDWTPESAGVTNPHSAQELDKKMREAAAAAEALGYDLAKKGLWYRLTKRKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="37" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB75</accession>
    <name>B1YB75_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0253</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB75"/>
    <dbReference type="STRING" id="444157.Tneu_0253"/>
    <dbReference type="KEGG" id="tne:Tneu_0253"/>
    <dbReference type="HOGENOM" id="CLU_3338615_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="37" mass="4110" checksum="53E035DD7F560249" modified="2008-05-20" version="1">MLDLQRHDLQALLESLEAGGYVKRVATPSACSPQRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB82</accession>
    <name>B1YB82_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger SWIM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0260</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349634.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB82"/>
    <dbReference type="STRING" id="444157.Tneu_0260"/>
    <dbReference type="GeneID" id="6165546"/>
    <dbReference type="KEGG" id="tne:Tneu_0260"/>
    <dbReference type="eggNOG" id="arCOG05496">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2353318_0_0_2"/>
    <dbReference type="OrthoDB" id="142306at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04434">
        <property type="entry name" value="SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SWIM-type" evidence="2">
        <location>
            <begin position="46"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="99" mass="11605" checksum="0C77835DAF58830A" modified="2008-05-20" version="1">MLCKEAAKGAVYKLNEEVYIRSVERRGLWLVALCYVRSQSRREECYQVVLKLKLGTRYFTGRCECPDFRYRGGPCKHIVRAKVALREYLKAATSLRRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB86</accession>
    <name>B1YB86_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Chromosome partition protein Smc</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0264</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349638.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB86"/>
    <dbReference type="STRING" id="444157.Tneu_0264"/>
    <dbReference type="GeneID" id="6165543"/>
    <dbReference type="KEGG" id="tne:Tneu_0264"/>
    <dbReference type="eggNOG" id="arCOG00385">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_686278_0_0_2"/>
    <dbReference type="OrthoDB" id="28897at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000785">
        <property type="term" value="C:chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000793">
        <property type="term" value="C:condensed chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000796">
        <property type="term" value="C:condensin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003682">
        <property type="term" value="F:chromatin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1000">
        <property type="entry name" value="arf6 gtpase in complex with a specific effector, jip4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43941">
        <property type="entry name" value="STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43941:SF1">
        <property type="entry name" value="STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="326"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="144"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="383" mass="43059" checksum="FB1787EDDED92D65" modified="2008-05-20" version="1">MWRILPLLLAALAAAGTLTDHFSSPPIEVLVIRTDQWLFCQDYGVTIQIKATQPVTVNKVTVTAKFFPEGTLVPTVQSKTYNGFTLAAGQIWQESATFNYCPQRRIDPLILLEIAVYLPNYTLTYNYYIGRVLPTTYEDLASYAASLEQRVRDLAGQVEQLRRQAADLQTRLANLSTLLAVARADNDRLAAALAQAKAERDALKTQLDQLQAQLNGVSQARASLEAQLADARRQLDEARAAYDKLSSQYSDAQRTIAELQTRLADLQRQYDELKKSEQQLRESYYALSAKYSELSGRYDELNRAYRQAVEEKALLQNRYSELNTGFTWAINAATALAVALLFLIALVITRRRQTPPPPPQVKTAAVIQEEPKETLVKWPATRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBA2</accession>
    <name>B1YBA2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP:corrinoid adenosyltransferase BtuR/CobO/CobP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0281</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349654.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBA2"/>
    <dbReference type="STRING" id="444157.Tneu_0281"/>
    <dbReference type="GeneID" id="6165694"/>
    <dbReference type="KEGG" id="tne:Tneu_0281"/>
    <dbReference type="eggNOG" id="arCOG04678">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088595_2_0_2"/>
    <dbReference type="OrthoDB" id="24392at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008817">
        <property type="term" value="F:corrinoid adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003724">
        <property type="entry name" value="CblAdoTrfase_CobA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46638">
        <property type="entry name" value="CORRINOID ADENOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46638:SF1">
        <property type="entry name" value="CORRINOID ADENOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02572">
        <property type="entry name" value="CobA_CobO_BtuR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="153" mass="17273" checksum="7C0D40512C8AF9E5" modified="2008-05-20" version="1">MILAYVGGGKGKTTAALGTALRAWGHGMRVLAAFVMKTPFYMGEEVGEYKALRRLGIDVLTLWDLRRPEEVLREALARAGDYDLVILDEVNYAVRQGFVDPKVLLGLGRERPHFILTGNFEYPELYQVADLISRVEAVRHYYSRQVGVKGLDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBA3</accession>
    <name>B1YBA3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Probable cobalamin biosynthesis protein CobD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">cobD</name>
        <name evidence="12" type="ordered locus">Tneu_0282</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 11">Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 11">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 11">Cell membrane</location>
            <topology evidence="2 11">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the CobD/CbiB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349655.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBA3"/>
    <dbReference type="STRING" id="444157.Tneu_0282"/>
    <dbReference type="GeneID" id="6165769"/>
    <dbReference type="KEGG" id="tne:Tneu_0282"/>
    <dbReference type="eggNOG" id="arCOG04274">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054212_0_2_2"/>
    <dbReference type="OrthoDB" id="46105at2157"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015420">
        <property type="term" value="F:ABC-type vitamin B12 transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048472">
        <property type="term" value="F:threonine-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00024">
        <property type="entry name" value="CobD_CbiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004485">
        <property type="entry name" value="Cobalamin_biosynth_CobD/CbiB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34308">
        <property type="entry name" value="COBALAMIN BIOSYNTHESIS PROTEIN CBIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34308:SF1">
        <property type="entry name" value="COBALAMIN BIOSYNTHESIS PROTEIN CBIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03186">
        <property type="entry name" value="CobD_Cbib"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 11" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 11" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00016185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="296" mass="30838" checksum="7854B2779990CD76" modified="2008-05-20" version="1">MDAAALAFALALEALDVPAWWRGYLVTRLIHPALHPVSLVYRAASPLAKPGGVGRGLAVLAAGLAVGLAPALLAHWAKPHLGLLGPLVEGYLLKLSFGVAHIVYPCGRDADLRRVAQQFVRRDLSSASGGHVRSACLEAAAESLVDSYVSPLMWYILLGLPGAWLQRAVNTLDGLVGFPRFGKAGAPAAYLDTALNYIPARLAALCILAVSNGWRPPLLAHRRRMASRNAGWPIAALASALGVVLEKPGSYSVGEGGLPTPLDVARGLSAVARAAAAFVLLTSPALLPPPAWSSSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBB1</accession>
    <name>B1YBB1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">histidinol-phosphate transaminase</fullName>
            <ecNumber evidence="3">2.6.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_0290</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-histidinol phosphate + 2-oxoglutarate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:23744"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57766"/>
            <dbReference type="ChEBI" id="CHEBI:57980"/>
            <dbReference type="EC" id="2.6.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 7/9.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.9" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349663.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBB1"/>
    <dbReference type="STRING" id="444157.Tneu_0290"/>
    <dbReference type="GeneID" id="6165740"/>
    <dbReference type="KEGG" id="tne:Tneu_0290"/>
    <dbReference type="eggNOG" id="arCOG04273">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_3_2_2"/>
    <dbReference type="OrthoDB" id="39225at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004400">
        <property type="term" value="F:histidinol-phosphate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:L-histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00609">
        <property type="entry name" value="AAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II_large"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050106">
        <property type="entry name" value="HistidinolP_aminotransfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43643:SF6">
        <property type="entry name" value="HISTIDINOL-PHOSPHATE AMINOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43643">
        <property type="entry name" value="HISTIDINOL-PHOSPHATE AMINOTRANSFERASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4 11" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="8" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="7" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotransferase class I/classII large" evidence="10">
        <location>
            <begin position="52"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00047481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="304" mass="33177" checksum="7EC03F885AD12A6B" modified="2008-05-20" version="1">MTHGGSTWAEEVRYDFSDNSNPIGPPPGLEEALVQAAGRGVHGRFPAHLAEEVLREYEGVEVTLFNGATEALLYALLDLKPRRLLVAWPSYGDYERVARLLGVPSVRAPPPLLEKAARPGDVAILCNPNNPTGFYMPRDAVLDLARGLRRRGASLLVDESFLEFAGGQSVAPELPVVKSYGKFLATPGLRIGALLYKHRDPPPWRINSLADYAIYHTGAERLRAHRGRTAAYVGEEGARVRAAISRCVKSLPTSVHFQVVFGPPPPGVKVRPLWDKGIAGFRYSLRGPSENDVLIEAVCGASRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBC5</accession>
    <name>B1YBC5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc/iron permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0305</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349677.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBC5"/>
    <dbReference type="STRING" id="444157.Tneu_0305"/>
    <dbReference type="GeneID" id="6165957"/>
    <dbReference type="KEGG" id="tne:Tneu_0305"/>
    <dbReference type="eggNOG" id="arCOG00576">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015114_1_2_2"/>
    <dbReference type="OrthoDB" id="11839at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005385">
        <property type="term" value="F:zinc ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003689">
        <property type="entry name" value="ZIP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11040:SF70">
        <property type="entry name" value="OS05G0316100 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11040">
        <property type="entry name" value="ZINC/IRON TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02535">
        <property type="entry name" value="Zip"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="34"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="61"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="103"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="166"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="192"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="226"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="244" mass="25608" checksum="E0D9A9B400494EB1" modified="2008-05-20" version="1">MEVLFNSLFIALMTAVGALVGLFGYWARGWWIDVGLAYTGGVMLVASFTSLLIPASELGSFAEVALGFAAGAGAVFLMDRLLPHEHLVMGYEGPPQLRGRLKTAWLIALAIIIHNIPEGMAVGAATAYDPALGLLTALAIGVQDLPEGAAVTLPLAAVYRRRAAPLAIGILSGLLEGAVAAATALALEGTRWALPAAMSLAAGAMIYVTTAELFPEIYRGDDKLKPTLGFLLGFYTMLYLDTLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBC6</accession>
    <name>B1YBC6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0306</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349678.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBC6"/>
    <dbReference type="STRING" id="444157.Tneu_0306"/>
    <dbReference type="GeneID" id="6166026"/>
    <dbReference type="KEGG" id="tne:Tneu_0306"/>
    <dbReference type="eggNOG" id="arCOG03754">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_569409_0_0_2"/>
    <dbReference type="OrthoDB" id="28424at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="476" mass="52624" checksum="2BD7B2F945707794" modified="2008-05-20" version="1">MQRWAYLLAAALAAVPFAAWLISVIQWDSPPLEYRPTVSREDGRINIGITPVYQRYVDKPGGPYIVVILDGPTPTSVQVWAKGPNVGKIQLYDVEVSGNVVRIPLRGQFKRVLDDWRNATDVEVPIEIDLWYADAWGFAVAHVAPGHVAKLTRGEWQIKTKPRIVEWPKTEPPPPSRAEAGKSFQRPQPLDVDCRYEWRYNTTIFDTERDYGGRIPLILFINSNPYSGAAGLSSTITLIDRVWTAFGVVLGWEVGGVGITGPQWEVIQWDVKYNSTSIGIGPLMLYPEEKALGGTYGRLIIAKYDEYQVCYDRGVKVGESKTGRVKFQSDVLYIRGGSWISTDVPAEVITAVYNNFTDVVSAAAYPGQQLDLSVQLAGYYSSSCSGEASVGLPVGVIAKALLRARVHPALILLPVSVSADFKQFQGVELKAQYANLGRFNNRGYDVAEYVVVKGAKTPVYVGSCRVNLPFLIVDSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBD9</accession>
    <name>B1YBD9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0319</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349691.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBD9"/>
    <dbReference type="STRING" id="444157.Tneu_0319"/>
    <dbReference type="GeneID" id="6165330"/>
    <dbReference type="KEGG" id="tne:Tneu_0319"/>
    <dbReference type="eggNOG" id="arCOG03755">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_185777_0_0_2"/>
    <dbReference type="OrthoDB" id="28045at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37559">
        <property type="entry name" value="PAREP6 PART 2, AUTHENTIC FRAMESHIFT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37559:SF1">
        <property type="entry name" value="PAREP6 PART 2, AUTHENTIC FRAMESHIFT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="71" mass="8292" checksum="F4F39A30B5469358" modified="2008-05-20" version="1">MEEALKALEEARDLRRRHADWQFIESQPPKLRAALKYYVETGDIYVASRIAGMTVDEFNELRIRARIPSVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBF5</accession>
    <name>B1YBF5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aspartate kinase</fullName>
            <ecNumber evidence="3">2.7.2.4</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1840</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the aspartokinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.4" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBF5"/>
    <dbReference type="STRING" id="444157.Tneu_1840"/>
    <dbReference type="KEGG" id="tne:Tneu_1840"/>
    <dbReference type="eggNOG" id="arCOG00861">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009116_6_3_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004072">
        <property type="term" value="F:aspartate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009090">
        <property type="term" value="P:homoserine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04234">
        <property type="entry name" value="AAK_AK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="entry name" value="Acetylglutamate kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21499">
        <property type="entry name" value="ASPARTATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21499:SF70">
        <property type="entry name" value="ASPARTOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="Carbamate kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aspartate/glutamate/uridylate kinase" evidence="2">
        <location>
            <begin position="2"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="327" mass="35675" checksum="430CAC6878D62E6A" modified="2008-05-20" version="1">MVKIGGSLLRSAGDFARAADYIAKFPEPPVVVVSAMKGITDMLLELEKTRSYLLYEEVLHRHIAVARSLGVEDRVSPLLKELEHALTLPKAEWSTDHFASFGERLSATILHAVLEKRGIPARLYIAPIETDSRFGNAEPLRLHHRDELSRGDAVAVVTGFIGRDGEGRYTTVGRGGSDYTATYIGKEIGARKVSLVTDAPGVMTADPKEVEDAEVLPLMSIQEAIEAARAGAKNFHPRTFIPVVEAGNMAVEVRSYSNPGTLITNLYSPPPYKVVTRCGQGSCVVGLAARELVKLGGVALGDYTVKLEIPPRQVHEFLVKPYIKYIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBP0</accession>
    <name>B1YBP0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Aldehyde ferredoxin oxidoreductase</fullName>
            <ecNumber evidence="10">1.2.7.5</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1927</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>tungstopterin</name>
            <dbReference type="ChEBI" id="CHEBI:30402"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AOR/FOR family.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.5" evidence="10"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBP0"/>
    <dbReference type="STRING" id="444157.Tneu_1927"/>
    <dbReference type="KEGG" id="tne:Tneu_1927"/>
    <dbReference type="eggNOG" id="arCOG00706">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020364_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033726">
        <property type="term" value="F:aldehyde ferredoxin oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.569.10">
        <property type="entry name" value="Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.599.10">
        <property type="entry name" value="Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.9.10">
        <property type="entry name" value="Aldehyde ferredoxin oxidoreductase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013984">
        <property type="entry name" value="Ald_Fedxn_OxRdtase_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013985">
        <property type="entry name" value="Ald_Fedxn_OxRdtase_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013983">
        <property type="entry name" value="Ald_Fedxn_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036503">
        <property type="entry name" value="Ald_Fedxn_OxRdtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001203">
        <property type="entry name" value="OxRdtase_Ald_Fedxn_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036021">
        <property type="entry name" value="Tungsten_al_ferr_oxy-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051919">
        <property type="entry name" value="W-dependent_AOR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30038">
        <property type="entry name" value="ALDEHYDE FERREDOXIN OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30038:SF0">
        <property type="entry name" value="TUNGSTEN-CONTAINING ALDEHYDE FERREDOXIN OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01314">
        <property type="entry name" value="AFOR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02730">
        <property type="entry name" value="AFOR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00790">
        <property type="entry name" value="AFOR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48310">
        <property type="entry name" value="Aldehyde ferredoxin oxidoreductase, C-terminal domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56228">
        <property type="entry name" value="Aldehyde ferredoxin oxidoreductase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldehyde ferredoxin oxidoreductase N-terminal" evidence="9">
        <location>
            <begin position="17"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="627" mass="69228" checksum="B350F0A14A3A5CF7" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBQ2</accession>
    <name>B1YBQ2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">uroporphyrinogen-III C-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.107</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0336</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.107" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349707.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBQ2"/>
    <dbReference type="STRING" id="444157.Tneu_0336"/>
    <dbReference type="GeneID" id="6165108"/>
    <dbReference type="KEGG" id="tne:Tneu_0336"/>
    <dbReference type="eggNOG" id="arCOG00649">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011276_7_2_2"/>
    <dbReference type="OrthoDB" id="24444at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004851">
        <property type="term" value="F:uroporphyrin-III C-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019354">
        <property type="term" value="P:siroheme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="entry name" value="Cobalt-precorrin-4 Transmethylase, Domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050161">
        <property type="entry name" value="Siro_Cobalamin_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45790:SF3">
        <property type="entry name" value="S-ADENOSYL-L-METHIONINE-DEPENDENT UROPORPHYRINOGEN III METHYLTRANSFERASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45790">
        <property type="entry name" value="SIROHEME SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="Tetrapyrrole methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00839">
        <property type="entry name" value="SUMT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00840">
        <property type="entry name" value="SUMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Tetrapyrrole methylase" evidence="4">
        <location>
            <begin position="3"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="218" mass="23568" checksum="AA01C4240F33F228" modified="2008-05-20" version="1">MPLYVVGAGPGDPKLLTVRARELLEQADVVAYGDLVPEEVVKIAGRARVVKIGHRRVEHDAAVDALIEEARRSTVVILKNGDPTIFGRGVKICKTAKERGVPCEVVPGVSSFTAAAALFQIELTDGESLRHVALLSYPHFSADVLREVKADTVVIFMMGDRLGEVGQVLAQVCNPERVYLCVGVSTGGRCEEVALEVLGKKRSPRPALVIAQRCRFLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBU6</accession>
    <name>B1YBU6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AAA+ ATPase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0382</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349750.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBU6"/>
    <dbReference type="GeneID" id="6166113"/>
    <dbReference type="KEGG" id="tne:Tneu_0382"/>
    <dbReference type="eggNOG" id="arCOG03408">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070505_0_0_2"/>
    <dbReference type="OrthoDB" id="25948at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011579">
        <property type="entry name" value="ATPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01637">
        <property type="entry name" value="ATPase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="1">
        <location>
            <begin position="34"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="339" mass="37835" checksum="D82366E31A5E0165" modified="2008-05-20" version="1">MVRVKLRFAGGLQVVFSDRERALRQVEELAERGTHKPVLIYGPEGCGKTALLRQAFEILKEWGYGVIYYSPAEWAGGRLLTTEDLRELARGVAEVLNLPAAVLDKLLELAARAVRLGRGRVAVLLDDVFQAVGVDRAEHLVKALLNFIEYPPRDYERVVVLAASSEGTTRRRVGRHRWAELRVMWNMPRAGFGELLSQIPPPKPDLDTAWRLTGGNPDLAGELAAGGWDVGWAVAKIAAERRIRELAASLSQRQRAVLQEALEDPDAVEKHMAEEGAEALKLVEALVDRNLIIDWLPEREGRLWIDEPPPERDPVIGVGKSFAWQTPLHREAVRKALTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBV0</accession>
    <name>B1YBV0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0386</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349754.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBV0"/>
    <dbReference type="STRING" id="444157.Tneu_0386"/>
    <dbReference type="GeneID" id="6164718"/>
    <dbReference type="KEGG" id="tne:Tneu_0386"/>
    <dbReference type="eggNOG" id="arCOG03778">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1656944_0_0_2"/>
    <dbReference type="OrthoDB" id="29181at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="159" mass="17019" checksum="71D286FC952C8402" modified="2008-05-20" version="1">MWLRRGLWISTIAAVVILALLPSVSYLGLRHPANLAGMYLLTALAAGALYSFSKALGERLFLLLGLLVVPTAAAGVALLSAGWEAGGYLIAAAYWGEPVMGYFIYRRLAGRWRGVFLASAAAYAYSLPLTLFGLWLVPAVADAVKLAALVNLLREPVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBW7</accession>
    <name>B1YBW7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0403</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349771.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBW7"/>
    <dbReference type="STRING" id="444157.Tneu_0403"/>
    <dbReference type="GeneID" id="6166183"/>
    <dbReference type="KEGG" id="tne:Tneu_0403"/>
    <dbReference type="eggNOG" id="arCOG00744">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1324081_0_0_2"/>
    <dbReference type="OrthoDB" id="97174at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="212" mass="23851" checksum="32DB6DEBFAA92215" modified="2008-05-20" version="1">MCRLEEKDLDILRVAFYKRGAKFYGIYKEVKLPLATAWRRTNKLLSLGFLAERDEKLYVTDKGLIALAYAGDTAALGELARHYGEPPEAVKYLIDEVCGSVALEYIPLEKFSEVAKLLDIGNLYRYKGTVAERLVAKIMLEFCRPCRVDTEEGSYVLGNGFIVAAHCRLCNGGSYELLPDCTRMAEIFSNVKKVFIKSGGEGRHEDNKTRCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBX8</accession>
    <name>B1YBX8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0414</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349782.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBX8"/>
    <dbReference type="STRING" id="444157.Tneu_0414"/>
    <dbReference type="GeneID" id="6166169"/>
    <dbReference type="KEGG" id="tne:Tneu_0414"/>
    <dbReference type="eggNOG" id="arCOG06057">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1375570_0_0_2"/>
    <dbReference type="OrthoDB" id="28209at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="195" mass="21088" checksum="F7327E0192CFD76B" modified="2008-05-20" version="1">MSYGASYYFWAIYGTEIDVPAFLNKLVGLGYEVGKAYYRSGSVQVEPLPGGHAARRVYEEGEVRVYVDTARWAVGVSGEGYHLTARGVADVSRAFMELSFPEPPRAEFHVSLGFSGENCRRGVVKIADLEMAVDGFVLTAGSPQGGEGVYAAVNPAGGGRYILYVVVGGGWSYVVTYMKRIGDVLNGIVQYVTCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="37" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBZ2</accession>
    <name>B1YBZ2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0428</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBZ2"/>
    <dbReference type="KEGG" id="tne:Tneu_0428"/>
    <dbReference type="HOGENOM" id="CLU_2695916_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="73" mass="7594" checksum="8C9D51BC75A5ABB1" modified="2008-05-20" version="1">MLELGGPVVLGPNVTTESLALWGGGLKPVSIFFIAELGKAQVDVVNGKLPVAGRVVNVNARPKKPRIAGYAEL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC32</accession>
    <name>RL13_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein uL13</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L13</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl13</name>
        <name type="ordered locus">Tneu_1971</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL13 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351305.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC32"/>
    <dbReference type="SMR" id="B1YC32"/>
    <dbReference type="STRING" id="444157.Tneu_1971"/>
    <dbReference type="GeneID" id="6165958"/>
    <dbReference type="KEGG" id="tne:Tneu_1971"/>
    <dbReference type="eggNOG" id="arCOG04242">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076922_1_0_2"/>
    <dbReference type="OrthoDB" id="7668at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017148">
        <property type="term" value="P:negative regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00392">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1180.10">
        <property type="entry name" value="Ribosomal protein L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01366">
        <property type="entry name" value="Ribosomal_uL13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005822">
        <property type="entry name" value="Ribosomal_uL13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005823">
        <property type="entry name" value="Ribosomal_uL13_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023563">
        <property type="entry name" value="Ribosomal_uL13_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005755">
        <property type="entry name" value="Ribosomal_uL13_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036899">
        <property type="entry name" value="Ribosomal_uL13_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01077">
        <property type="entry name" value="L13_A_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF005004">
        <property type="entry name" value="PRK06394.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11545:SF3">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11545">
        <property type="entry name" value="RIBOSOMAL PROTEIN L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00572">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002181">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52161">
        <property type="entry name" value="Ribosomal protein L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00783">
        <property type="entry name" value="RIBOSOMAL_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000144189" description="Large ribosomal subunit protein uL13">
        <location>
            <begin position="1"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="182" mass="21240" checksum="CAB32C61DD3DF23D" modified="2008-05-20" version="1">MKTAILDLERLPERGEVVINAEGHIAGRLATYIAKALLEKPGLRIVVVNAEKLVVTGDEKMVVEWFKRKISEWGTHYNPEKAGPKIPRRPDRVFKRMVRGMLPKRAESGRRALKRLRVYVSVPMELLSRKRLVVYEVPPAKLRMRPLAKYVTLEEVWRQVDPAAWEQWKKAQELWQKRLKPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC38</accession>
    <name>B1YC38_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Tneu_1977</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351311.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC38"/>
    <dbReference type="STRING" id="444157.Tneu_1977"/>
    <dbReference type="GeneID" id="6165633"/>
    <dbReference type="KEGG" id="tne:Tneu_1977"/>
    <dbReference type="eggNOG" id="arCOG01181">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018693_1_0_2"/>
    <dbReference type="OrthoDB" id="50101at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030688">
        <property type="term" value="C:preribosome, small subunit precursor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030490">
        <property type="term" value="P:maturation of SSU-rRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.10:FF:000647">
        <property type="entry name" value="Serine/threonine protein kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015285">
        <property type="entry name" value="RIO2_wHTH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018934">
        <property type="entry name" value="RIO_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000687">
        <property type="entry name" value="RIO_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45852">
        <property type="entry name" value="SER/THR-PROTEIN KINASE RIO2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45852:SF1">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE RIO2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01163">
        <property type="entry name" value="RIO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09202">
        <property type="entry name" value="Rio2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00090">
        <property type="entry name" value="RIO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="13">
        <location>
            <begin position="95"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB40892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="306" mass="34948" checksum="D04C8EBD63E9AA8D" modified="2008-05-20" version="1">MIKQVVEAYGKLSKRDLRLLRILEVGQHRHEFVPQELVERWARGKREEVLDSLRRLHYLGLIRRNLSPYLGWKITASGYDVLAIHTLRMRRKLLRLSPTPIGVGKESEVYSGETPGGLKVAVKFYRGGVSSFRYEKAFESKVKRFKHLRWVYETRLSALAEFFALGKIFEAGGMVPEPLARTRHVVVMTYIDGVELFRLEGGDYKKIAEDVVETLRTALKLGIVHGDLSPYNILVGGRSYVIDWPQWLPSGHPTALDYLMRDLGNVASYFGEKGVEIPVEELLELARTSGTAGELFTAEINKYIYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC64</accession>
    <name>B1YC64_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_2004</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC64"/>
    <dbReference type="STRING" id="444157.Tneu_2004"/>
    <dbReference type="KEGG" id="tne:Tneu_2004"/>
    <dbReference type="eggNOG" id="arCOG07000">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_153632_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="138" mass="15339" checksum="BA6BD00324CFDB46" modified="2008-05-20" version="1">MYIGILALTVDVYVSEIPVVLIRRRGLVVKKSVIERGGSPVGEYIYVKRGLFEAEAEYDLEDGVLYYLQVCWLGTCAVWYDGEPDRPVPPHLARRALAYFGELAKFSHAAVAAMRVLTSSLGHSSPLSTSDLTHRQPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC85</accession>
    <name>B1YC85_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Arsenite-transporting ATPase</fullName>
            <ecNumber evidence="3">3.6.3.16</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0451</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arsA ATPase family.</text>
    </comment>
    <dbReference type="EC" id="3.6.3.16" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349818.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC85"/>
    <dbReference type="STRING" id="444157.Tneu_0451"/>
    <dbReference type="GeneID" id="6166005"/>
    <dbReference type="KEGG" id="tne:Tneu_0451"/>
    <dbReference type="eggNOG" id="arCOG02849">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040761_4_0_2"/>
    <dbReference type="OrthoDB" id="46198at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02035">
        <property type="entry name" value="ArsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025723">
        <property type="entry name" value="ArsA/GET3_ATPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016300">
        <property type="entry name" value="ATPase_ArsA/GET3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00345">
        <property type="entry name" value="GET3_arsA_TRC40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10803">
        <property type="entry name" value="ARSENICAL PUMP-DRIVING ATPASE ARSENITE-TRANSLOCATING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10803:SF3">
        <property type="entry name" value="ATPASE GET3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02374">
        <property type="entry name" value="ArsA_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ArsA/GET3 Anion-transporting ATPase-like" evidence="2">
        <location>
            <begin position="10"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="326" mass="36912" checksum="1F320F20068CA1AF" modified="2008-05-20" version="1">MRQLLDQRVKYIFFGGKGGVGKTVVAAATALYLAESAGERTLLASFNPVHSLSSVFGQDLSGGVVKEVRGVRNLWAVEVQYDDIVEKYKARISNLLREMLKMAELSVDIKPLIDIATTNPAFHEAASFDKMMDVVLKEGSKFDRVIFDMAAVANAVRLIGLSKLYGAWLQRTIKMRMETLSLKEQLSFRKEKVREEIERDPVLAELKDLYSRYMEVRKVLTDPAQTRFVFVTIPTVLSISVVQRFIEMVKAYEIPFGGVVVNMVIPGEEAARDATGFLRSKYEEQQRNLEVIRQSFSPHILASVRLFPEDIVGLERLRQFVAELVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC93</accession>
    <name>B1YC93_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl transferase group 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0459</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349826.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC93"/>
    <dbReference type="STRING" id="444157.Tneu_0459"/>
    <dbReference type="CAZy" id="GT4">
        <property type="family name" value="Glycosyltransferase Family 4"/>
    </dbReference>
    <dbReference type="GeneID" id="6165839"/>
    <dbReference type="KEGG" id="tne:Tneu_0459"/>
    <dbReference type="eggNOG" id="arCOG01418">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_711016_0_0_2"/>
    <dbReference type="OrthoDB" id="132546at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12526:SF635">
        <property type="entry name" value="GLYCOSYL TRANSFERASE GROUP 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12526">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13692">
        <property type="entry name" value="Glyco_trans_1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyltransferase subfamily 4-like N-terminal" evidence="1">
        <location>
            <begin position="16"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="374" mass="40806" checksum="19FBB474117CD219" modified="2008-05-20" version="1">MKVAVFSESLWPLGEGGAELATYLYARLLAELGVRVRVYVRRGGARWEGLDVAELGGAGTRKFHAPPLGARRALEWCDVAYFASAYWELVPLAKRMGRRAVVHLHSYDPACPVGTLYNARGGSVCRPETRSCWGCIHLQERWLGRPLWRAVASQVLNGLFNPLFAEAVRRADALVFVSEAQRRLFAEHFGDVPRSHVVYNPAPPLQYLPPGGRAVGYFGGLSPWKGVYVLLRAWARLGGGARLYMTRASALRSRPPGVVALGDLTPWELEEVHRSVSVVAVPSLWWEPFGYAALEGLVRGRVVVASDVGGLPEVVGGAPGARLVPPGDADALAEALEWALAADAAELGARNREYALRRFDGVRLAERLLKVLEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC96</accession>
    <name>B1YC96_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0462</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC96"/>
    <dbReference type="STRING" id="444157.Tneu_0462"/>
    <dbReference type="CAZy" id="GT2">
        <property type="family name" value="Glycosyltransferase Family 2"/>
    </dbReference>
    <dbReference type="KEGG" id="tne:Tneu_0462"/>
    <dbReference type="eggNOG" id="arCOG00894">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033536_7_3_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04179">
        <property type="entry name" value="DPM_DPG-synthase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050256">
        <property type="entry name" value="Glycosyltransferase_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48090:SF7">
        <property type="entry name" value="RFBJ PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48090">
        <property type="entry name" value="UNDECAPRENYL-PHOSPHATE 4-DEOXY-4-FORMAMIDO-L-ARABINOSE TRANSFERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="222"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="256"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="329"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="359"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="2">
        <location>
            <begin position="10"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="388" mass="41707" checksum="5E95753545DE8658" modified="2008-05-20" version="1">MSFRHDVCITVVLPVLNEAEALPRVVEELRAAGFSNILVVDGGSTDGSVEVAKRLGVRVVPQMGRGKGMAVRTALMYVDTPYVAFLDADYTYPAEDLKKLLPLLRHYDVVLGARRGEMPLVYKLGNGALGWLFRLLFGVDIRDPLTGMYAAKTEVLRDAALEARGFDLEVDLLAKALAAGARVAEVEIGYRRRVGKKKLRPWHGLSIALKSLSLAYRLNPTLSLSLLGALLLVPGVALGSWVAYRFFYQGVPHYMLGLLSLILLMLGALSVALLPLATAVLRLQAAVRRRDLRLPTDCLPPMPEPAPPAAPASAEGSEAETPLLHVGRGLVLSFMALLAVAAYYLGVGDAATANKLAEWAYYALAGAVVALLVDAAVVSRRGQRGSQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCA2</accession>
    <name>B1YCA2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0468</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349835.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCA2"/>
    <dbReference type="GeneID" id="6166099"/>
    <dbReference type="KEGG" id="tne:Tneu_0468"/>
    <dbReference type="eggNOG" id="arCOG04394">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_127515_4_2_2"/>
    <dbReference type="OrthoDB" id="57062at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1260.10">
        <property type="entry name" value="DsrEFH-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027396">
        <property type="entry name" value="DsrEFH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003787">
        <property type="entry name" value="Sulphur_relay_DsrE/F-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37691">
        <property type="entry name" value="BLR3518 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37691:SF1">
        <property type="entry name" value="BLR3518 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02635">
        <property type="entry name" value="DsrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75169">
        <property type="entry name" value="DsrEFH-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="111" mass="11924" checksum="79CC51FEF7E6251D" modified="2008-05-20" version="1">MYRLLLHVDSDDVGPMSIALSNAENFLAAVGRGEVALVANGPGVRHFVRGSQFGERIASLARRGVRFYVCSNALRNLGIDPSSLVAEAEVVPAGIVKIVELVQQGYIYVKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="42" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCC9</accession>
    <name>B1YCC9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PaREP1 domain containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0497</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349862.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCC9"/>
    <dbReference type="GeneID" id="6166010"/>
    <dbReference type="KEGG" id="tne:Tneu_0497"/>
    <dbReference type="eggNOG" id="arCOG03722">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1782561_0_0_2"/>
    <dbReference type="OrthoDB" id="30877at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.330">
        <property type="entry name" value="Nucleotidyltransferases domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010268">
        <property type="entry name" value="PaREP1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05942">
        <property type="entry name" value="PaREP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="109"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="145" mass="16663" checksum="72A7EBE1C42627D3" modified="2008-05-20" version="1">MNAVLQEVERRLALVEKYYENYRSYLARGAYSKASEHLWGIANNLASLLSLLKGGRPITRHSDLRRFLDVLVRELAAREGGGEVVEAFKEGVLALEILHANFFHDFLEERQFEELRIKAERLLKILEEELYRLLQAQFGGSGGTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="39" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCD3</accession>
    <name>B1YCD3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0501</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349866.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCD3"/>
    <dbReference type="GeneID" id="6165894"/>
    <dbReference type="KEGG" id="tne:Tneu_0501"/>
    <dbReference type="eggNOG" id="arCOG12852">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2490583_0_0_2"/>
    <dbReference type="OrthoDB" id="46202at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="86" mass="10080" checksum="4E92B99F48E3116B" modified="2008-05-20" version="1">MVYSELLKSINPTDAERQLALQETDSRAKAYLAMYLAWKHRHELTHEGDYWTCIHDLYHTAGLKLDSLKKRPDLSQILNLIEPEIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCG0</accession>
    <name>B1YCG0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Phosphomethylpyrimidine synthase</fullName>
            <ecNumber evidence="9">4.1.99.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_0530</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EC" id="4.1.99.17" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCG0"/>
    <dbReference type="STRING" id="444157.Tneu_0530"/>
    <dbReference type="KEGG" id="tne:Tneu_0530"/>
    <dbReference type="eggNOG" id="arCOG02741">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013181_2_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070284">
        <property type="term" value="F:phosphomethylpyrimidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.540">
        <property type="entry name" value="Radical SAM ThiC family, central domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038521">
        <property type="entry name" value="ThiC/Bza_core_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002817">
        <property type="entry name" value="ThiC/BzaA/B"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009895">
        <property type="entry name" value="PRK13352.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00190">
        <property type="entry name" value="thiC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30557:SF1">
        <property type="entry name" value="PHOSPHOMETHYLPYRIMIDINE SYNTHASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30557">
        <property type="entry name" value="THIAMINE BIOSYNTHESIS PROTEIN THIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01964">
        <property type="entry name" value="ThiC_Rad_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00407">
        <property type="entry name" value="phosphomethylpyrimidine_syntha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01114">
        <property type="entry name" value="phosphomethylpyrimidine_syntha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00113">
        <property type="entry name" value="Radical_SAM_Phosphomethylpyrim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="NCBIfam" id="TIGR00190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="443" mass="48522" checksum="79FD3FAC0222095E" modified="2008-05-20" version="1">MWKTFLYGIDQLFMAKTLIQQAREGRAPPELERVAKAEDVSVAKLRDRLARGQAVVLTNAKSPPRRLTGVGKGLHTKVNVNLGTSSEVVDLGAELKKVEVANRWGDTLMDLSVGGDLDAVRRAVLSKAEIPVGTVPIYQAFIEAFEKRGGGAYMTEDHLFEVVERQLKDGVSFMTIHAAVTRDLALKVLKSDRVIPVVSRGGDMVIGWMLYNESENPYLKNWDYLLELFAEYDATISIGDALRPGAIADAHDEFQIAELVEAARLAKRAIKAGVQVMLEGPGHVPLNEIVWSIKLEKKLTGGVPYYVLGPLPTDVAAPYDHIASAVGAALAAAAGADLLCYITPAEHLSLPTVKQVEEGVKAYRVAAHIGDIVKLGPKASGWDREVSVYRGRLDWANMINKLLDPEAAWAVYRQFGEPKVKGCTMCGKYCPMMWVKEQARKTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="92" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCL8</accession>
    <name>B1YCL8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Phenylalanine--tRNA ligase alpha subunit</fullName>
            <ecNumber evidence="11">6.1.1.20</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Phenylalanyl-tRNA synthetase alpha subunit</fullName>
            <shortName evidence="11">PheRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">pheS</name>
        <name evidence="13" type="ordered locus">Tneu_0592</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>tRNA(Phe) + L-phenylalanine + ATP = L-phenylalanyl-tRNA(Phe) + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19413"/>
            <dbReference type="Rhea" id="RHEA-COMP:9668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9699"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78531"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Binds 2 magnesium ions per tetramer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.20" evidence="11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCL8"/>
    <dbReference type="STRING" id="444157.Tneu_0592"/>
    <dbReference type="KEGG" id="tne:Tneu_0592"/>
    <dbReference type="eggNOG" id="arCOG00410">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025086_2_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006432">
        <property type="term" value="P:phenylalanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00496">
        <property type="entry name" value="PheRS_alpha_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00282">
        <property type="entry name" value="Phe_tRNA_synth_alpha2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004529">
        <property type="entry name" value="Phe-tRNA-synth_IIc_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022917">
        <property type="entry name" value="Phe_tRNA_ligase_alpha_bac/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002319">
        <property type="entry name" value="Phenylalanyl-tRNA_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00468">
        <property type="entry name" value="pheS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003210">
        <property type="entry name" value="PRK04172.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11538:SF40">
        <property type="entry name" value="PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11538">
        <property type="entry name" value="PHENYLALANYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01409">
        <property type="entry name" value="tRNA-synt_2d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="7 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="8 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminoacyl-transfer RNA synthetases class-II family profile" evidence="12">
        <location>
            <begin position="233"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="321"/>
        </location>
        <ligand>
            <name>L-phenylalanine</name>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="360"/>
            <end position="362"/>
        </location>
        <ligand>
            <name>L-phenylalanine</name>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="400"/>
        </location>
        <ligand>
            <name>L-phenylalanine</name>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="425"/>
        </location>
        <ligand>
            <name>L-phenylalanine</name>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB39531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="494" mass="56468" checksum="B0774C8BF24662D7" modified="2008-05-20" version="1">MLLQTPVALVPQQIYEILRRAPAWRPLEEVAREMGVAPESLMRYVEEARARGLLQVERRTAESYELTEEGRRRAEEGLPEYKLLKAARCEGGLCVADLAQPEADLALANLAKLGVRPRGRRLELDEETYRRLLAAVEERQRLLASIDKAPPEVLQEFARRKLVKKVEKTAVYVKAAVPPEAVKPAEVKTALTAEDIASGRWRSYTLKPFDLSIEPPEHPGPVPHFFNEFLDYVREVMVGLGFEEARGPVLEVEFWNFDALFQAQDHPAREVHDTFYVRWEGPLERPPPELMDAVGKIHEERWRYRWDPNKALNPVLRTQTTATTIRALAERGDGEYKVFTIGRVFRPEKLDPKHSMEFHQLDGIVVGPGLTFKHLLGQLEQIAKALGMAKVKFRPAYFPFTSPSVEVYAEHPKLGWVEFGGAGIFRPEVTEPLGVRKSRVLAWGWGLDRIAMIILGIDDIRELFTKDPERLREYYSRWARYRRSAAAAGGRYTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCM6</accession>
    <name>B1YCM6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acetyl/acyl transferase related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0600</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349959.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCM6"/>
    <dbReference type="STRING" id="444157.Tneu_0600"/>
    <dbReference type="GeneID" id="6165440"/>
    <dbReference type="KEGG" id="tne:Tneu_0600"/>
    <dbReference type="eggNOG" id="arCOG01848">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051638_9_0_2"/>
    <dbReference type="OrthoDB" id="30669at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009085">
        <property type="term" value="P:lysine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.10.10">
        <property type="entry name" value="Hexapeptide repeat proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050179">
        <property type="entry name" value="Trans_hexapeptide_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43300:SF10">
        <property type="entry name" value="2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N-ACETYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43300">
        <property type="entry name" value="ACETYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14602">
        <property type="entry name" value="Hexapep_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="Trimeric LpxA-like enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="4" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="226" mass="23955" checksum="EB096379EAAF22A8" modified="2008-05-20" version="1">MGLISTKAKVYARYISPDAYIYGPTVVGRDSFIDAAVIGYPTRQKILQGFSSPDEVSDGARLGESVVVRSGVVIYEDVEVGDGAEFGHNVLVREFTKIGRGVRVGTQAVIEREVKIGDRAWIQSMVYIPNGTVIEEDVFIGPNAVITNDKYPPSRRLAPVVIRRGAVIGANSTIVAGIEVGEGAVVAAGAVVTKDVPPGVVVAGVPARVVGKAEEYLRKRAVYEGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCQ2</accession>
    <name>B1YCQ2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0626</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349985.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCQ2"/>
    <dbReference type="STRING" id="444157.Tneu_0626"/>
    <dbReference type="GeneID" id="58787331"/>
    <dbReference type="KEGG" id="tne:Tneu_0626"/>
    <dbReference type="eggNOG" id="arCOG07693">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3148119_0_0_2"/>
    <dbReference type="OrthoDB" id="27655at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="47" mass="5155" checksum="2607160C85AD306B" modified="2008-05-20" version="1">MRTVEKLGPLSKLLIEIGVDPRLPIQLLVARLYTVAPKLVSRLADAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCU6</accession>
    <name>B1YCU6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Type III restriction protein res subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0670</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350029.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCU6"/>
    <dbReference type="STRING" id="444157.Tneu_0670"/>
    <dbReference type="GeneID" id="6165304"/>
    <dbReference type="KEGG" id="tne:Tneu_0670"/>
    <dbReference type="eggNOG" id="arCOG00876">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_421288_0_0_2"/>
    <dbReference type="OrthoDB" id="11644at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140097">
        <property type="term" value="F:catalytic activity, acting on DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd17926">
        <property type="entry name" value="DEXHc_RE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050615">
        <property type="entry name" value="ATP-dep_DNA_Helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11274:SF12">
        <property type="entry name" value="HELICASE, POSSIBLE DNA REPAIR RAD25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11274">
        <property type="entry name" value="RAD25/XP-B DNA REPAIR HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="5">
        <location>
            <begin position="284"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="6">
        <location>
            <begin position="483"/>
            <end position="638"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="652" mass="73022" checksum="97A82E9261636934" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCX4</accession>
    <name>B1YCX4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">isocitrate dehydrogenase (NADP(+))</fullName>
            <ecNumber evidence="4">1.1.1.42</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ordered locus">Tneu_0698</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>D-threo-isocitrate + NADP(+) = 2-oxoglutarate + CO2 + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19629"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.42"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="15">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="15">Binds 1 Mg(2+) or Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the isocitrate and isopropylmalate dehydrogenases family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.42" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350057.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCX4"/>
    <dbReference type="STRING" id="444157.Tneu_0698"/>
    <dbReference type="GeneID" id="6165505"/>
    <dbReference type="KEGG" id="tne:Tneu_0698"/>
    <dbReference type="eggNOG" id="arCOG01164">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031953_7_1_2"/>
    <dbReference type="OrthoDB" id="23624at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004450">
        <property type="term" value="F:isocitrate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006097">
        <property type="term" value="P:glyoxylate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.718.10">
        <property type="entry name" value="Isopropylmalate Dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019818">
        <property type="entry name" value="IsoCit/isopropylmalate_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004439">
        <property type="entry name" value="Isocitrate_DH_NADP_dimer_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024084">
        <property type="entry name" value="IsoPropMal-DH-like_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF005036">
        <property type="entry name" value="PRK06451.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43504">
        <property type="entry name" value="ISOCITRATE DEHYDROGENASE [NADP]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43504:SF1">
        <property type="entry name" value="ISOCITRATE DEHYDROGENASE [NADP]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00180">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01329">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53659">
        <property type="entry name" value="Isocitrate/Isopropylmalate dehydrogenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00470">
        <property type="entry name" value="IDH_IMDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0329">Glyoxylate bypass</keyword>
    <keyword evidence="8 15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="11 15" id="KW-0464">Manganese</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 14" id="KW-0521">NADP</keyword>
    <keyword evidence="10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Isopropylmalate dehydrogenase-like" evidence="18">
        <location>
            <begin position="46"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>D-threo-isocitrate</name>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>D-threo-isocitrate</name>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>D-threo-isocitrate</name>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>D-threo-isocitrate</name>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>D-threo-isocitrate</name>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="319"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="351"/>
            <end position="357"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="364"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="407"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="site" description="Critical for catalysis" evidence="16">
        <location>
            <position position="175"/>
        </location>
    </feature>
    <feature type="site" description="Critical for catalysis" evidence="16">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-succinyllysine" evidence="17">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <feature type="modified residue" description="Phosphoserine" evidence="17">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-acetyllysine" evidence="17">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-succinyllysine" evidence="17">
        <location>
            <position position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR604439-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR604439-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRSR" id="PIRSR604439-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR604439-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR604439-5"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="SMART" id="SM01329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="ACB39637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="437" mass="48576" checksum="77EBA21BB8A07BEE" modified="2008-05-20" version="1">MAVNIEKVKSEISNVVPFSGKYIDPPEGEYVTYLGPGQLKVPEKVVIGYIEGDGIGPEVAYAAIKVANAAVEKAYGGSRKVIWYEVVVGEKGEKIFGTRLPSQSVDVLKKVRVFLKAPLETPVGGGFRSINVTLRQLFDLYANIRPVKYFPGLPSPLKKPEVDLVIFRENTEDVYAGIEWPYDSPEAAKVREFLRREFGINLRDDAGIGIKPISKFGTQRIARLALKFAVENKRRVVTVMHKGNIQKYTEGAFKEWAFEVARTEFRQHVVFEEELGQYGGQVPPGKILVNDRIADNMLQQLLTRTGEYDVILAPNLNGDYVSDEAAGLVGGLGVAPGIDVGDWGMMAEPVHGTAPKYRGKNYVNPTATILAVELLFRFMGWIEAASYISKGVEATYRSGYYTADLVRQMDEEEKRRVKEVLGTQEFADKVVELIKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCX8</accession>
    <name>B1YCX8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0702</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350061.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCX8"/>
    <dbReference type="STRING" id="444157.Tneu_0702"/>
    <dbReference type="GeneID" id="6165278"/>
    <dbReference type="KEGG" id="tne:Tneu_0702"/>
    <dbReference type="eggNOG" id="arCOG05528">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2285156_0_0_2"/>
    <dbReference type="OrthoDB" id="26826at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="100" mass="11782" checksum="6FF9E3BC4623F646" modified="2008-05-20" version="1">MRQKVEQYFKDLEAQIDKDIEAFTVEWRQYEALAQIQLQEGLYVFIIFSWSDEDCAIEYMVGDENAVIQPKYIPHLEKALSIIKTADELARKRFTCLQSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCX9</accession>
    <name>B1YCX9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">phenylalanine--tRNA ligase</fullName>
            <ecNumber evidence="4">6.1.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Tneu_0703</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.20" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350062.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCX9"/>
    <dbReference type="STRING" id="444157.Tneu_0703"/>
    <dbReference type="GeneID" id="6165580"/>
    <dbReference type="KEGG" id="tne:Tneu_0703"/>
    <dbReference type="eggNOG" id="arCOG00412">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020279_3_0_2"/>
    <dbReference type="OrthoDB" id="10073at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009328">
        <property type="term" value="C:phenylalanine-tRNA ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006432">
        <property type="term" value="P:phenylalanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.56.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.40.10">
        <property type="entry name" value="Phenylalanyl-trna Synthetase, Chain B, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005146">
        <property type="entry name" value="B3/B4_tRNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045060">
        <property type="entry name" value="Phe-tRNA-ligase_IIc_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004531">
        <property type="entry name" value="Phe-tRNA-synth_IIc_bsu_arc_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020825">
        <property type="entry name" value="Phe-tRNA_synthase-like_B3/B4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041616">
        <property type="entry name" value="PheRS_beta_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005147">
        <property type="entry name" value="tRNA_synthase_B5-dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00471">
        <property type="entry name" value="pheT_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10947:SF0">
        <property type="entry name" value="PHENYLALANINE--TRNA LIGASE BETA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10947">
        <property type="entry name" value="PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03484">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17759">
        <property type="entry name" value="tRNA_synthFbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00873">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00874">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="Putative DNA-binding domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51483">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B5" evidence="13">
        <location>
            <begin position="263"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB39642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="516" mass="57304" checksum="34C0AAE44CEF1F7A" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCY3</accession>
    <name>ARCH_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein archease</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_0707</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Activates the tRNA-splicing ligase complex by facilitating the enzymatic turnover of catalytic subunit RtcB. Acts by promoting the guanylylation of RtcB, a key intermediate step in tRNA ligation. Can also alter the NTP specificity of RtcB such that ATP, dGTP or ITP is used efficiently.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the archease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350066.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCY3"/>
    <dbReference type="SMR" id="B1YCY3"/>
    <dbReference type="STRING" id="444157.Tneu_0707"/>
    <dbReference type="GeneID" id="6165619"/>
    <dbReference type="KEGG" id="tne:Tneu_0707"/>
    <dbReference type="eggNOG" id="arCOG04055">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_111362_3_0_2"/>
    <dbReference type="OrthoDB" id="8831at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006388">
        <property type="term" value="P:tRNA splicing, via endonucleolytic cleavage and ligation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.55.10.10">
        <property type="entry name" value="Archease domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01222">
        <property type="entry name" value="Archease_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002804">
        <property type="entry name" value="Archease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022952">
        <property type="entry name" value="Archease_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023572">
        <property type="entry name" value="Archease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036820">
        <property type="entry name" value="Archease_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001617">
        <property type="entry name" value="PRK00407.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12682">
        <property type="entry name" value="ARCHEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12682:SF11">
        <property type="entry name" value="PROTEIN ARCHEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01951">
        <property type="entry name" value="Archease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69819">
        <property type="entry name" value="MTH1598-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0106">Calcium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <feature type="chain" id="PRO_1000139235" description="Protein archease">
        <location>
            <begin position="1"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000250" key="1"/>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01222"/>
        </source>
    </evidence>
    <sequence length="147" mass="16923" checksum="9C2435BE8B816839" modified="2008-05-20" version="1">MTCGKPADYRYGEHTADVLIQAYGCTLEEAFVNAAVALAEVTYSTSKVEPKHSREVEVEYDDLEGLLFKWIDELLYLFDAEKFAISRKIDLKLEKDGGYRIKAVLYGDIYSQEKHGFTGLIVKAMTFHMMEIRQIGDYWMVQYVVDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD12</accession>
    <name>B1YD12_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molybdopterin-guanine dinucleotide biosynthesis protein B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0736</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350095.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD12"/>
    <dbReference type="STRING" id="444157.Tneu_0736"/>
    <dbReference type="GeneID" id="6165133"/>
    <dbReference type="KEGG" id="tne:Tneu_0736"/>
    <dbReference type="eggNOG" id="arCOG00532">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_147802_0_0_2"/>
    <dbReference type="OrthoDB" id="9014at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052539">
        <property type="entry name" value="MGD_biosynthesis_adapter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004435">
        <property type="entry name" value="MobB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40072:SF1">
        <property type="entry name" value="MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS ADAPTER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40072">
        <property type="entry name" value="MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS ADAPTER PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03205">
        <property type="entry name" value="MobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB)" evidence="1">
        <location>
            <begin position="12"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="152" mass="16877" checksum="64D0D5A2296A3121" modified="2008-05-20" version="1">MSLNTAERRPCVIQITGGKDVGKTVLAERLISELKSRGYSVVAVKISHHDPEPPHKDTHRLRRAGADRVLFYNGDIYVLYTREVSCGDVAADYIVVEGLRDVKIGFKIHVGPDPPSDADVVLQTPNEAVKPMCVEQDVCAVLRLISAYRPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD30</accession>
    <name>B1YD30_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0754</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350113.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD30"/>
    <dbReference type="GeneID" id="6165096"/>
    <dbReference type="KEGG" id="tne:Tneu_0754"/>
    <dbReference type="eggNOG" id="arCOG05539">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_186531_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="69" mass="7982" checksum="B8D02FB811EF5576" modified="2008-05-20" version="1">MVPINAVWTSRRRTPDGYYVVVLGLYAQEVLRVVGAERAGRFYIYRTRSWAEVLRIVRRAEALGLDVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD43</accession>
    <name>B1YD43_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L15e</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0767</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL15 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350126.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD43"/>
    <dbReference type="STRING" id="444157.Tneu_0767"/>
    <dbReference type="GeneID" id="6164571"/>
    <dbReference type="KEGG" id="tne:Tneu_0767"/>
    <dbReference type="eggNOG" id="arCOG04209">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080796_1_0_2"/>
    <dbReference type="OrthoDB" id="8183at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002181">
        <property type="term" value="P:cytoplasmic translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1120.10">
        <property type="entry name" value="Ribosomal protein l15e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024794">
        <property type="entry name" value="Rbsml_eL15_core_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000439">
        <property type="entry name" value="Ribosomal_eL15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020925">
        <property type="entry name" value="Ribosomal_eL15_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012678">
        <property type="entry name" value="Ribosomal_uL23/eL15/eS24_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003269">
        <property type="entry name" value="PRK04243.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11847:SF4">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN EL15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11847">
        <property type="entry name" value="RIBOSOMAL PROTEIN L15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00827">
        <property type="entry name" value="Ribosomal_L15e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01384">
        <property type="entry name" value="Ribosomal_L15e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54189">
        <property type="entry name" value="Ribosomal proteins S24e, L23 and L15e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01194">
        <property type="entry name" value="RIBOSOMAL_L15E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00035535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="188" mass="22515" checksum="D85447ACA42ED847" modified="2008-05-20" version="1">MARSAYGYMAMWYRKIGREVHERLMRKILIEWRRAPSIVRVERPFRLEKARKLGYKAKQGVVVVRVRLMRGPFNRRRPDSGRRPKRMGVYGITTWKSWRQVAEERAARRYPNLEVLNSYWVADDGVYRYYEVILVDCNQPTVRADPLYSGICGREVPSRRITRRLRERQRKLIEHLKKTLLPKLKGGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD75</accession>
    <name>B1YD75_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Prephenate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0799</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350158.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD75"/>
    <dbReference type="STRING" id="444157.Tneu_0799"/>
    <dbReference type="GeneID" id="6164529"/>
    <dbReference type="KEGG" id="tne:Tneu_0799"/>
    <dbReference type="eggNOG" id="arCOG00245">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1084248_0_0_2"/>
    <dbReference type="OrthoDB" id="24743at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008977">
        <property type="term" value="F:prephenate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004665">
        <property type="term" value="F:prephenate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006571">
        <property type="term" value="P:tyrosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046826">
        <property type="entry name" value="PDH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050812">
        <property type="entry name" value="Preph/Arog_dehydrog"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003099">
        <property type="entry name" value="Prephen_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21363">
        <property type="entry name" value="PREPHENATE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21363:SF0">
        <property type="entry name" value="PREPHENATE DEHYDROGENASE [NADP(+)]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02153">
        <property type="entry name" value="PDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51176">
        <property type="entry name" value="PDH_ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Prephenate/arogenate dehydrogenase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="250" mass="27313" checksum="B301204E66C1F118" modified="2008-05-20" version="1">MKVGIVGGGAMGVWLRRELSALHETLVYDVDRSRSDVSTLGELVRWAEVVIVAVPFWAAGDVLREVAPLASGRLVMDIATFKRGVVEAYGVFPLDAKVASVHPLFGPGAPSIRGQRVLVMEVPGRPGALEAFHFWSELGAAAEWGDLARHDYYVSRTIALSYAVGLALARIYAEAGEEVFKYGGTSFRYLAAYAFSLLRDPNAPRYAEEAPLEEFIKALSRGDLPKALLDPNAAYEAFYRALEALKDLYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD84</accession>
    <name>B1YD84_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">3-dehydroquinate dehydratase</fullName>
            <shortName evidence="4">3-dehydroquinase</shortName>
            <ecNumber evidence="4">4.2.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Type I DHQase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Type I dehydroquinase</fullName>
            <shortName evidence="4">DHQ1</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">aroD</name>
        <name evidence="6" type="ordered locus">Tneu_0808</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>3-dehydroquinate = 3-dehydroshikimate + H2O</text>
            <dbReference type="Rhea" id="RHEA:21096"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16630"/>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
            <dbReference type="EC" id="4.2.1.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 3/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the type-I 3-dehydroquinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.10" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350167.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD84"/>
    <dbReference type="STRING" id="444157.Tneu_0808"/>
    <dbReference type="GeneID" id="6164298"/>
    <dbReference type="KEGG" id="tne:Tneu_0808"/>
    <dbReference type="eggNOG" id="arCOG02097">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_955187_0_0_2"/>
    <dbReference type="OrthoDB" id="34329at2157"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003855">
        <property type="term" value="F:3-dehydroquinate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004106">
        <property type="term" value="F:chorismate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046279">
        <property type="term" value="P:3,4-dihydroxybenzoate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00502">
        <property type="entry name" value="DHQase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.59.10">
        <property type="entry name" value="Chorismate mutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00214">
        <property type="entry name" value="AroD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036263">
        <property type="entry name" value="Chorismate_II_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010958">
        <property type="entry name" value="Chorismate_mutase_highGC-bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036979">
        <property type="entry name" value="CM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002701">
        <property type="entry name" value="CM_II_prokaryot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001381">
        <property type="entry name" value="DHquinase_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050146">
        <property type="entry name" value="Type-I_3-dehydroquinase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01808">
        <property type="entry name" value="CM_M_hiGC-arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43699">
        <property type="entry name" value="3-DEHYDROQUINATE DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43699:SF1">
        <property type="entry name" value="3-DEHYDROQUINATE DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01817">
        <property type="entry name" value="CM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01487">
        <property type="entry name" value="DHquinase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00830">
        <property type="entry name" value="CM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51569">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48600">
        <property type="entry name" value="Chorismate mutase II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51168">
        <property type="entry name" value="CHORISMATE_MUT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="2 4 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0704">Schiff base</keyword>
    <feature type="domain" description="Chorismate mutase" evidence="5">
        <location>
            <begin position="216"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="4">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="4">
        <location>
            <position position="139"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="26"/>
            <end position="28"/>
        </location>
        <ligand>
            <name>3-dehydroquinate</name>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>3-dehydroquinate</name>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>3-dehydroquinate</name>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>3-dehydroquinate</name>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>3-dehydroquinate</name>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="295" mass="31577" checksum="71D58D6E3DBFB9B7" modified="2008-05-20" version="1">MICGAVPVRKPADVYRALDSPAPCLELRLDYLESSLAEAKPALEEAVARRTVILTVRRREEGGAWRGTEEERAALYLKLLELTPHFVDVEAAAPAAGQVAAARGRTKLIASRHDFGGTPPYETLLSWAREAAALGDVVKIVTYAREPRDGLAVLSLIGAVEKPTVAFAMGPAGAYTRLAAAALGSPIMYVSLGEATAPGQISLDAYYAALLGMGAAPGGEGLPALREALDWIDGALMHLLKRRLEVCRDMGKIKKSAGLPIYDDIREAQVLKRAGDFKQIFELVVQMCKAVQLVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDB3</accession>
    <name>B1YDB3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0839</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDB3"/>
    <dbReference type="STRING" id="444157.Tneu_0839"/>
    <dbReference type="KEGG" id="tne:Tneu_0839"/>
    <dbReference type="eggNOG" id="arCOG03753">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2893394_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="62" mass="7205" checksum="25B88CF49B3817A8" modified="2008-05-20" version="1">MLPLAAMPTVFVKPGRVYIAVSEEDLDLVEEGWEPVARFKNAAIAFRAARWYADRFEYVLEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDB5</accession>
    <name>B1YDB5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Protease HtpX homolog</fullName>
            <ecNumber evidence="11">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">htpX</name>
        <name evidence="13" type="ordered locus">Tneu_0841</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="11">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell membrane</location>
            <topology evidence="11">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 11">Belongs to the peptidase M48B family.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDB5"/>
    <dbReference type="STRING" id="444157.Tneu_0841"/>
    <dbReference type="KEGG" id="tne:Tneu_0841"/>
    <dbReference type="eggNOG" id="arCOG01331">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042266_4_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07338">
        <property type="entry name" value="M48B_HtpX_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2010.10">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00188">
        <property type="entry name" value="Pept_M48_protease_HtpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050083">
        <property type="entry name" value="HtpX_protease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022919">
        <property type="entry name" value="Pept_M48_protease_HtpX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43221">
        <property type="entry name" value="PROTEASE HTPX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43221:SF2">
        <property type="entry name" value="PROTEASE HTPX HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 11" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="3 11" id="KW-0645">Protease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7 11" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="44"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="81"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="190"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="224"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase M48" evidence="12">
        <location>
            <begin position="114"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB39778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="351" mass="38198" checksum="010D7904E3C6FA62" modified="2008-05-20" version="1">MQRRDMFPLFDPVAMGLYVLGYILMIVVAATVAPKLAASVSGRFTLYGAMALTGVLIVLTTAFVIYLIATTALPALRGYGWGFLLGMIFFVVLMNVLTYLASPFLINATYGARPDERLQQIVDGVAARLGAPFKLKAVVVDGPPNAFAYGNFLTGRYVAVTSGMLALTDRRELEAVIGHEIGHHLHRDNALMLLFGVLPSILYYLGVASVQAAMSSNNRNSSPAALAAVGILAVVVSFLVQLLVLAFSRLREYYADTAGAKAAGKEAMQFALAKIHKYYFANPEVREAVQSDKFRALFIYALVNAVANPFVTVTKSDVEAIKRAGYSAFEEVFSTHPPIPKRLRFLDQLEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDF0</accession>
    <name>B1YDF0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Resolvase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0876</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350233.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDF0"/>
    <dbReference type="STRING" id="444157.Tneu_0876"/>
    <dbReference type="GeneID" id="6165105"/>
    <dbReference type="KEGG" id="tne:Tneu_0876"/>
    <dbReference type="eggNOG" id="arCOG03162">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1105243_0_0_2"/>
    <dbReference type="OrthoDB" id="24728at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00338">
        <property type="entry name" value="Ser_Recombinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="entry name" value="Resolvase, N-terminal catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045745">
        <property type="entry name" value="HTH_58_Actinobacteria-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006118">
        <property type="entry name" value="Recombinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050639">
        <property type="entry name" value="SSR_resolvase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30461">
        <property type="entry name" value="DNA-INVERTASE FROM LAMBDOID PROPHAGE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30461:SF2">
        <property type="entry name" value="SERINE RECOMBINASE PINE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19575">
        <property type="entry name" value="HTH_58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="Resolvase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00397">
        <property type="entry name" value="RECOMBINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0229">DNA integration</keyword>
    <keyword evidence="3" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="4">
        <location>
            <begin position="3"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="251" mass="28824" checksum="E70B3CF01AADCB5F" modified="2008-05-20" version="1">MIPAVTYVRVSTEEQDPENQRVFLERWAAERGLYILRHYVDVGVSGATEPWERPAFRQMAAEVEKLDPRPKVLLVYEISRLVRSFQELFALLDVVENKMGLVVVSASEREQALQNLDGVYRQFLRAVLAFVATMEREFIRQRTKTALERARARGRIWNVAERRGDIAKAVVDMYTSGASLRETARAFGLSLYEVRRILSEAGVYRPTAYSCPRCFSRLKVVERTAKVAGGRYTVTERLYCPNCGYEEVREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDG9</accession>
    <name>B1YDG9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ATPase AAA-type core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0895</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350252.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDG9"/>
    <dbReference type="STRING" id="444157.Tneu_0895"/>
    <dbReference type="GeneID" id="6164508"/>
    <dbReference type="KEGG" id="tne:Tneu_0895"/>
    <dbReference type="eggNOG" id="arCOG05702">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_798374_0_0_2"/>
    <dbReference type="OrthoDB" id="25344at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="347" mass="38571" checksum="7FEDBDC90A0E1E90" modified="2008-05-20" version="1">MIKRICLESFRAVDKRCVELGRYTLLYGPPNSGKTTFIEAAALLIQSRGEQWLALEGPLLIIHEPEDIHRGGDLEKPFAVELAVELEGGEVVYGYRYSTAANYVEQWVGRGGVLLAKMAKRGERGVLLHPVEAELCTAPYAVMNEDVLITCSAVEDERLRAAERALLDLRIGLKDKFYLISGRRLAAWKYTYETHVDLMPATSVGPEGQFTPHHLSRILTQSSYERAREELYRYLHVADVEDVRVGLVKSGRIAMYVKRGGLWTNVYNAGSYTKAVLPILLQLILANEGSSLFVDDADLAVPRDKAELLLASALEIAERRRLQLVAAARDSAFAEAARRLGVETAAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDH2</accession>
    <name>B1YDH2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Transcription elongation factor Spt4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">spt4</name>
        <name evidence="4" type="ordered locus">Tneu_0898</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Stimulates transcription elongation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Heterodimer composed of Spt4 and Spt5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the archaeal Spt4 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350255.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDH2"/>
    <dbReference type="STRING" id="444157.Tneu_0898"/>
    <dbReference type="GeneID" id="6166321"/>
    <dbReference type="KEGG" id="tne:Tneu_0898"/>
    <dbReference type="eggNOG" id="arCOG04077">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_199467_0_0_2"/>
    <dbReference type="OrthoDB" id="275101at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00949">
        <property type="entry name" value="Spt4_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029040">
        <property type="entry name" value="RPABC4/Spt4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022800">
        <property type="entry name" value="Spt4/RpoE2_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007178">
        <property type="entry name" value="Spt4_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038589">
        <property type="entry name" value="Spt4_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041664">
        <property type="entry name" value="RNAP_arch_Epp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40704">
        <property type="entry name" value="TRANSCRIPTION ELONGATION FACTOR SPT4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40704:SF1">
        <property type="entry name" value="TRANSCRIPTION ELONGATION FACTOR SPT4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06093">
        <property type="entry name" value="Spt4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01389">
        <property type="entry name" value="Spt4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63393">
        <property type="entry name" value="RNA polymerase subunits"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Spt4/RpoE2 zinc finger" evidence="3">
        <location>
            <begin position="11"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM01389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="73" mass="8152" checksum="7B3C85A4EFC03977" modified="2008-05-20" version="1">MSARRRTLPGYKACRQCKLVVPEDAKQCPNCGSEEFVGRWRGMIAVIEPAKSCIAKRLGIEKPGIYALELVEE</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2010-08-10" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDJ0</accession>
    <name>PSB2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Proteasome subunit beta 2</fullName>
            <ecNumber evidence="1">3.4.25.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">20S proteasome beta subunit 2</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Proteasome core protein PsmB 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">psmB2</name>
        <name type="ordered locus">Tneu_0916</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Cleavage of peptide bonds with very broad specificity.</text>
            <dbReference type="EC" id="3.4.25.1"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="1">The formation of the proteasomal ATPase PAN-20S proteasome complex, via the docking of the C-termini of PAN into the intersubunit pockets in the alpha-rings, triggers opening of the gate for substrate entry. Interconversion between the open-gate and close-gate conformations leads to a dynamic regulation of the 20S proteasome proteolysis activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">The 20S proteasome core is composed of 14 alpha and 14 beta subunits that assemble into four stacked heptameric rings, resulting in a barrel-shaped structure. The two inner rings, each composed of seven catalytic beta subunits, are sandwiched by two outer rings, each composed of seven alpha subunits. The catalytic chamber with the active sites is on the inside of the barrel. Has a gated structure, the ends of the cylinder being occluded by the N-termini of the alpha-subunits. Is capped at one or both ends by the proteasome regulatory ATPase, PAN.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase T1B family.</text>
    </comment>
    <dbReference type="EC" id="3.4.25.1" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350273.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDJ0"/>
    <dbReference type="SMR" id="B1YDJ0"/>
    <dbReference type="STRING" id="444157.Tneu_0916"/>
    <dbReference type="GeneID" id="6164563"/>
    <dbReference type="KEGG" id="tne:Tneu_0916"/>
    <dbReference type="eggNOG" id="arCOG00970">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035750_7_2_2"/>
    <dbReference type="OrthoDB" id="6330at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019774">
        <property type="term" value="C:proteasome core complex, beta-subunit complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004298">
        <property type="term" value="F:threonine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010498">
        <property type="term" value="P:proteasomal protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="entry name" value="Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02113_A">
        <property type="entry name" value="Proteasome_B_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019983">
        <property type="entry name" value="Pept_T1A_Psome_bsu_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000243">
        <property type="entry name" value="Pept_T1A_subB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016050">
        <property type="entry name" value="Proteasome_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001353">
        <property type="entry name" value="Proteasome_sua/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023333">
        <property type="entry name" value="Proteasome_suB-type"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03634">
        <property type="entry name" value="arc_protsome_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32194:SF0">
        <property type="entry name" value="ATP-DEPENDENT PROTEASE SUBUNIT HSLV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32194">
        <property type="entry name" value="METALLOPROTEASE TLDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00227">
        <property type="entry name" value="Proteasome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00141">
        <property type="entry name" value="PROTEASOME"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00854">
        <property type="entry name" value="PROTEASOME_BETA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51476">
        <property type="entry name" value="PROTEASOME_BETA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0645">Protease</keyword>
    <keyword id="KW-0647">Proteasome</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0888">Threonine protease</keyword>
    <keyword id="KW-0865">Zymogen</keyword>
    <feature type="propeptide" id="PRO_0000397484" description="Removed in mature form; by autocatalysis" evidence="1">
        <location>
            <begin position="1"/>
            <end position="9"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_0000397485" description="Proteasome subunit beta 2">
        <location>
            <begin position="10"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="10"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02113"/>
        </source>
    </evidence>
    <sequence length="203" mass="21556" checksum="879BE899429C0A17" modified="2008-05-20" version="1" precursor="true">MGEEFQVGATAVGIRAKDGVVLAAEKRVSYGFYTLSTAGKKVFIVNDKLAIASAGIIADMQALAKILKLNARSYELEVKKKPTVKAMAKLLSVVMFSRRFMPFYAEVLVGGVDEEGPHLIVMDPLGSLIEDNYAALGTGAKLAVSLLDASYRPDMTVEEAKKLAVQAVKAAIERDPVSGGGIDLVVVDGGGAREEEVKVQVVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDQ8</accession>
    <name>B1YDQ8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase beta domain protein region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0988</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDQ8"/>
    <dbReference type="STRING" id="444157.Tneu_0988"/>
    <dbReference type="KEGG" id="tne:Tneu_0988"/>
    <dbReference type="eggNOG" id="arCOG01199">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_130257_9_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05403">
        <property type="entry name" value="NT_KNTase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="entry name" value="Beta Polymerase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43449">
        <property type="entry name" value="NUCLEOTIDYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43449:SF3">
        <property type="entry name" value="POLYMERASE NUCLEOTIDYL TRANSFERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="Nucleotidyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Polymerase nucleotidyl transferase" evidence="1">
        <location>
            <begin position="20"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="112" mass="12428" checksum="4550FC6D8FF8B7D2" modified="2008-05-20" version="1">MERVFRELSRYARWAVERGALAVVLIGSLARGDYTAFSDADVVIVVREDGRRPMDRIPDFLDPSFPIDLEPRVYTVEELRKMAGTRLAEEIASGVLLAGDAEVLCEAVGACR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDT2</accession>
    <name>B1YDT2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">CARDB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1013</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350365.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDT2"/>
    <dbReference type="STRING" id="444157.Tneu_1013"/>
    <dbReference type="GeneID" id="6165028"/>
    <dbReference type="KEGG" id="tne:Tneu_1013"/>
    <dbReference type="eggNOG" id="arCOG02090">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_392151_0_0_2"/>
    <dbReference type="OrthoDB" id="116073at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35902:SF6">
        <property type="entry name" value="CONSERVED WITHIN P. AEROPHILUM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35902">
        <property type="entry name" value="S-LAYER DOMAIN-LIKE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="636"/>
            <end position="655"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="663" mass="69102" checksum="CFB33A01344E5953" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="91" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDT9</accession>
    <name>B1YDT9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1021</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350372.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDT9"/>
    <dbReference type="STRING" id="444157.Tneu_1021"/>
    <dbReference type="GeneID" id="6166328"/>
    <dbReference type="KEGG" id="tne:Tneu_1021"/>
    <dbReference type="eggNOG" id="arCOG00194">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="87732at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03230">
        <property type="entry name" value="ABC_DR_subfamily_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050763">
        <property type="entry name" value="ABC_transporter_ATP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42711">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42711:SF5">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN NATA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="237" mass="25455" checksum="1BCDDDBC616B34DF" modified="2008-05-20" version="1">MGCIKAEELVKRFGSVVALGGVSFEVGCGESVALLGPNGAGKSTTLRILAGLLKPDAGRAAVCGHDVQARPREAKACLGFLPEDAVPFLNLTVRENLQYMAVLRGLPESAVDEALKLLGIEELADRSAGSLSRGNRQRLAIALAVMHRPKVLLLDEPLNYLDIPAQQDAIKLFQSLKSSGSAILVSTHIMSVAERLADKALVINRGRIVWQGPMEELRERAADAGERIEDVVARLMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDX3</accession>
    <name>B1YDX3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1055</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="7">Binds 4 [4Fe-4S] clusters per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell envelope</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350405.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDX3"/>
    <dbReference type="STRING" id="444157.Tneu_1055"/>
    <dbReference type="GeneID" id="6164420"/>
    <dbReference type="KEGG" id="tne:Tneu_1055"/>
    <dbReference type="eggNOG" id="arCOG01503">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043374_0_3_2"/>
    <dbReference type="OrthoDB" id="2837at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045333">
        <property type="term" value="P:cellular respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015944">
        <property type="term" value="P:formate oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051555">
        <property type="entry name" value="FDH_Electron_Transfer_Unit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014603">
        <property type="entry name" value="Formate_DH_Fe-S_su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43545">
        <property type="entry name" value="FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, IRON-SULFUR SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43545:SF4">
        <property type="entry name" value="IRON-SULFUR PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13247">
        <property type="entry name" value="Fer4_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12797">
        <property type="entry name" value="Fer4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036298">
        <property type="entry name" value="FDH_4Fe4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 7" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5 7" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="249"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="9">
        <location>
            <begin position="13"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="9">
        <location>
            <begin position="84"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="9">
        <location>
            <begin position="118"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
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        <location>
            <position position="25"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
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        <location>
            <position position="32"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>3</label>
        </ligand>
    </feature>
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        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
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        </ligand>
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            <position position="107"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>4</label>
        </ligand>
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        <location>
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        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
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        </ligand>
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        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
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        </ligand>
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        <location>
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        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
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        </ligand>
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        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
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        </ligand>
    </feature>
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        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
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        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
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        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR036298-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="279" mass="30728" checksum="093EB50B054C5148" modified="2008-05-20" version="1">MVSIKFPRPEEGYAVLVDLDKCIGCRACQVACKEWNGLSAERTQFQGVLTSPQSLTSKDWKVVFYYEGATRKRLLTPSGEVAFSQVEVAPLPYNCMHCVEAPCARACPVGAIKVSPEGAVVIEKDECIGCGYCQMACPYDVPKRGDDGKFYKCTFCVDRIQNGREPACVEVCPTRVFTFGPAKDVIERARQEEAKGRKVYGLNVDRYVGGSVRWIYVTSERRGFALDSHFADKGKPVAVEEAREVLKPLVTVGGAALAGALAVLGLAAWRRERVQEKKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE12</accession>
    <name>B1YE12_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peptidase M16 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1094</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M16 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE12"/>
    <dbReference type="STRING" id="444157.Tneu_1094"/>
    <dbReference type="KEGG" id="tne:Tneu_1094"/>
    <dbReference type="eggNOG" id="arCOG04065">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_711015_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.830.10">
        <property type="entry name" value="Metalloenzyme, LuxS/M16 peptidase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050361">
        <property type="entry name" value="MPP/UQCRC_Complex"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011765">
        <property type="entry name" value="Pept_M16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007863">
        <property type="entry name" value="Peptidase_M16_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11851">
        <property type="entry name" value="METALLOPROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11851:SF49">
        <property type="entry name" value="MITOCHONDRIAL-PROCESSING PEPTIDASE SUBUNIT ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00675">
        <property type="entry name" value="Peptidase_M16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05193">
        <property type="entry name" value="Peptidase_M16_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="LuxS/MPP-like metallohydrolase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="45"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase M16 N-terminal" evidence="3">
        <location>
            <begin position="47"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase M16 C-terminal" evidence="4">
        <location>
            <begin position="187"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="414" mass="44950" checksum="7A8970A777FFB2F0" modified="2008-05-20" version="1">MGRRGGSRPVLRRRGLGIGVAKFIYGVVWGCVLLDNGVRLVLDRFAAPTAAVVVGVGVGSLFEERGRRGITHLLEHMLFRVPGFDVDEAVESLGGSNNAYTERDVLLLVLEGVSESAAGLVELAFRLYANERFDEADLERERDVVLSELRQVREDPSDWVGELGVRALFGDSDWGDPVGGTPEAVESISLGDLLEFKRRWFTPGNTFVVLSGGFGEEAVAKAVELFGGLEGEAPPRPRPTAGSGPGRIVERREVDGVYYARAVRVAVGDPAAAFAALHGAAFHLESGTKSVLFNLLRTPGIAYSYYVDYDVVGDVAYLEVVVESARSLEEARRAVSEALKPRSPPPYRLRYFDYVWRVAWRSPANRAVSIGEYVAKGGRPEDAEAAFRRAAEGGTLWVTPLAEAEAVVGPEELI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="36" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE16</accession>
    <name>B1YE16_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1098</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE16"/>
    <dbReference type="STRING" id="444157.Tneu_1098"/>
    <dbReference type="KEGG" id="tne:Tneu_1098"/>
    <dbReference type="HOGENOM" id="CLU_540396_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="504" mass="56148" checksum="1879C1D744331DC7" modified="2008-05-20" version="1">MTMLRRDSVCQCLEITDPSGHGLEYFNKCRYVPVSVVDTIINGILEGGIPKLFIVSASQGYGKTTAFLYLRKKLFNEGVADEEKKIHRYIVAYTKADPNLDLMMENIKSSIKLQFSQYIHERTLQSLAVEKIQGCFTDLWMWLEFLKLVDFPVVVLIDDVKPTELDKVAELIRGLASTGIVKAVAIALHAGYGKEVSQRLNEIGASSRYDVRVITNDHFVPSGGALEELNSFTEQLFKDQGDWQAIAEVFKSLFYNFGARVALKFAEAYRCKRKEDKGDLALLSNKIRDALLEAAIKDGLPAQREKEVAPHRKCDVVIQNKCVEVKVVGDPNYELKKEGYSPDLYLIVGKQAGIKNAVVVDINARKLTSALDKSLGLTPNDMASADKGRVYELAARAIVGYVKDKVYEALNVHPRRTSEVVETVKKLCIQIGLSEINRSELIRRYGTILKELSRKLGIPAPTKASDVDTLINALAQYYTGNGLGTPPLRKSDDSRVKCVATKSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="39" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE27</accession>
    <name>B1YE27_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1109</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350459.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE27"/>
    <dbReference type="GeneID" id="6165609"/>
    <dbReference type="KEGG" id="tne:Tneu_1109"/>
    <dbReference type="eggNOG" id="arCOG05421">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1987701_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="121" mass="13808" checksum="202D143882BB02AD" modified="2008-05-20" version="1">MYLYFGRVRVGPLVGYLWLLGRRLYLKVGWRPRDTVYLGSVDDLLGVAVRVRRLVPRPLPVRQLVAALVDALKKAYYVASRCRDSPRWKIRAWEAAMAIEDAASALAMYWPSTAKKILDDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE56</accession>
    <name>B1YE56_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CRISPR-associated protein, Csa1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1139</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350488.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE56"/>
    <dbReference type="STRING" id="444157.Tneu_1139"/>
    <dbReference type="GeneID" id="6165851"/>
    <dbReference type="KEGG" id="tne:Tneu_1139"/>
    <dbReference type="eggNOG" id="arCOG04195">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_905009_0_0_2"/>
    <dbReference type="OrthoDB" id="19284at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009260">
        <property type="entry name" value="CRISPR-ass_Csa1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01896">
        <property type="entry name" value="cas_AF1879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06023">
        <property type="entry name" value="Csa1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009226">
        <property type="entry name" value="UCP009226"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="278" mass="30188" checksum="E2E2F888F6A0AE6B" modified="2008-05-20" version="1">MLTLLEIARLLRRAKVTQGPAEVSPELRGWAYDRQPVKPPAYLGLALSDFAYGYCPTGRSLYLKYVLGERPQPTKPLAEGQALHAVLFKALEDFRRYVYSGTPMSPPGEGMPEDLRAKAEALYRYIAVRLTGEYQHVLASRLARSRDAAAFYAAPIAAQIAVDGAPLGLSYVVADGVALGAVVEFKFGPSQNVDVALAGYAMAIEAEYGVPIDYGIHVQISIDGQVEYRATAYHLGDAPRAKFLEARDEAIDVVASARDPGPAPQCPKTCPYYSVCRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8K2</accession>
    <name>B1Y8K2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CRISPR-associated RAMP protein, Csm5 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1151</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350500.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8K2"/>
    <dbReference type="STRING" id="444157.Tneu_1151"/>
    <dbReference type="GeneID" id="6166027"/>
    <dbReference type="KEGG" id="tne:Tneu_1151"/>
    <dbReference type="eggNOG" id="arCOG03719">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_896074_0_0_2"/>
    <dbReference type="OrthoDB" id="27948at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="329" mass="36057" checksum="BD94B5F8B9E0CBC9" modified="2008-05-20" version="1">MSRLSAAGGPLAGWETAVLRLRAETPVFVLSGRAAVVGLDALWSGGRLHVLDLEHPALLRLIEAQVRAGRAPSLADVVAAARADPARYSRLSLPSPQLPDKAEVKLGIPPPASTVKGMLRTAYLHWVLKRDGEARGRFLSAVAQALEERVHPKFLAARGEAAVFKVVVGKRVWDVFNAVLVREGPAGARFEVYKIDVVKGSNVIASAYAVGASPGSAFEYRVVVRPRPREDGGGDAVLALDDLKKALDDFAREAGEREGWRPRCPAAVRIGFGAGRRWKTVLNLVERHDPALYRRIQEYMTQRLKRFWGDVTKKTVEGMPVGWACYEWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8M5</accession>
    <name>B1Y8M5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Plasma-membrane proton-efflux P-type ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Tneu_1175</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIIA subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350523.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8M5"/>
    <dbReference type="STRING" id="444157.Tneu_1175"/>
    <dbReference type="GeneID" id="6165034"/>
    <dbReference type="KEGG" id="tne:Tneu_1175"/>
    <dbReference type="eggNOG" id="arCOG01578">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002360_6_4_2"/>
    <dbReference type="OrthoDB" id="8588at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008553">
        <property type="term" value="F:P-type proton-exporting transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120029">
        <property type="term" value="P:proton export across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="2.70.150.10:FF:000042">
        <property type="entry name" value="Plasma membrane ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1000:FF:000211">
        <property type="entry name" value="Plasma membrane ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.150.10">
        <property type="entry name" value="Calcium-transporting ATPase, cytoplasmic transduction domain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1110.10">
        <property type="entry name" value="Calcium-transporting ATPase, transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004014">
        <property type="entry name" value="ATPase_P-typ_cation-transptr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059000">
        <property type="entry name" value="ATPase_P-type_domA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006534">
        <property type="entry name" value="P-type_ATPase_IIIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01647">
        <property type="entry name" value="ATPase-IIIA_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42861">
        <property type="entry name" value="CALCIUM-TRANSPORTING ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00690">
        <property type="entry name" value="Cation_ATPase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00122">
        <property type="entry name" value="E1-E2_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00702">
        <property type="entry name" value="Hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00119">
        <property type="entry name" value="CATATPASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00120">
        <property type="entry name" value="HATPASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG00002">
        <property type="entry name" value="C1.7:_P-type_atpase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00003">
        <property type="entry name" value="Haloacid_Dehalogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00831">
        <property type="entry name" value="Cation_ATPase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="Calcium ATPase, transduction domain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="Calcium ATPase, transmembrane domain M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81660">
        <property type="entry name" value="Metal cation-transporting ATPase, ATP-binding domain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-1278">Translocase</keyword>
    <keyword evidence="4 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="51"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="94"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="240"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="273"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="656"/>
            <end position="677"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="689"/>
            <end position="710"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="722"/>
            <end position="742"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="754"/>
            <end position="776"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="782"/>
            <end position="803"/>
        </location>
    </feature>
    <feature type="domain" description="Cation-transporting P-type ATPase N-terminal" evidence="13">
        <location>
            <begin position="2"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB40104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="817" mass="88373" checksum="8E8FB0F409DBC89F" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8M6</accession>
    <name>B1Y8M6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Tryptophan synthase beta chain</fullName>
            <ecNumber evidence="12">4.2.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">trpB</name>
        <name evidence="14" type="ordered locus">Tneu_1176</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 12">The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11 12">
            <text>(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + L-tryptophan + H2O</text>
            <dbReference type="Rhea" id="RHEA:10532"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.2.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 12">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 12">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 12">Tetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the TrpB family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.20" evidence="12"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350524.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8M6"/>
    <dbReference type="STRING" id="444157.Tneu_1176"/>
    <dbReference type="GeneID" id="6164722"/>
    <dbReference type="KEGG" id="tne:Tneu_1176"/>
    <dbReference type="eggNOG" id="arCOG01432">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042858_1_0_2"/>
    <dbReference type="OrthoDB" id="371827at2157"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052684">
        <property type="term" value="F:L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00133">
        <property type="entry name" value="Trp_synth_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006316">
        <property type="entry name" value="Trp_synth_b-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006653">
        <property type="entry name" value="Trp_synth_b_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023026">
        <property type="entry name" value="Trp_synth_beta/beta-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="TrpB-like_PALP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="TrpB-like_PALP_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009057">
        <property type="entry name" value="PRK12391.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01415">
        <property type="entry name" value="trpB_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48077:SF6">
        <property type="entry name" value="TRYPTOPHAN SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48077">
        <property type="entry name" value="TRYPTOPHAN SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001413">
        <property type="entry name" value="Trp_syn_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500824">
        <property type="entry name" value="TrpB_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="Tryptophan synthase beta subunit-like PLP-dependent enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00168">
        <property type="entry name" value="TRP_SYNTHASE_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 12" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="10 12 14" id="KW-0456">Lyase</keyword>
    <keyword evidence="8 12" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 12" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="Tryptophan synthase beta chain-like PALP" evidence="13">
        <location>
            <begin position="65"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="12">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00049047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB40105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="418" mass="45454" checksum="6DAE4C4DBF7B81C8" modified="2008-05-20" version="1">MVDRWYNIAADLPGVLAPPKDPDEGESRIALLTRILPSALIDQEFTAERWVPIPEEVRGVYRRVGRPTPLLRAEGFERALGTKVHIYYKYEGVLPVGSHKLNTAVAQAYYAKADGAVEVATETGAGQWGMAVSLAAALFGLKATVFMTRSSYNSKRQRLVFMRAYGATVYPSPSEVTETGRRHFRPDHPGSLGIAISEAVEYVLSGERRRYLPGSVLEFVLLHQTVIGLEAMGQLPEEPDYAVACVGGGSNFGGFTYPMLGAKLRGEGFGKTKFLAVESAAAPKLTRGEYRYDFPDATGILPLIKMYTLGHDYVPPPVHAAGLRYHGAAPSLSLLKRLGHVEAVAYGQEEVMEAALLFARSEGFLPAPESAHAVKAVADLARKLPPGSVVVFNMSGHGLLDVDSYEKALSWDKLYKQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8N7</accession>
    <name>B1Y8N7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 8">Thymidine kinase</fullName>
            <ecNumber evidence="2 8">2.7.1.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">tdk</name>
        <name evidence="11" type="ordered locus">Tneu_1187</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>thymidine + ATP = dTMP + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19129"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17748"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.21"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the thymidine kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.21" evidence="2 8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350535.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8N7"/>
    <dbReference type="STRING" id="444157.Tneu_1187"/>
    <dbReference type="GeneID" id="6165439"/>
    <dbReference type="KEGG" id="tne:Tneu_1187"/>
    <dbReference type="eggNOG" id="arCOG04798">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064400_3_0_2"/>
    <dbReference type="OrthoDB" id="372131at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004797">
        <property type="term" value="F:thymidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071897">
        <property type="term" value="P:DNA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046104">
        <property type="term" value="P:thymidine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.60.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00124">
        <property type="entry name" value="Thymidine_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001267">
        <property type="entry name" value="Thymidine_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020633">
        <property type="entry name" value="Thymidine_kinase_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003296">
        <property type="entry name" value="PRK04296.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11441">
        <property type="entry name" value="THYMIDINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11441:SF0">
        <property type="entry name" value="THYMIDINE KINASE, CYTOSOLIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00265">
        <property type="entry name" value="TK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF035805">
        <property type="entry name" value="TK_cell"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00603">
        <property type="entry name" value="TK_CELLULAR_TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8" id="KW-0237">DNA synthesis</keyword>
    <keyword evidence="6 8 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8 11" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton acceptor" evidence="8 9">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="7"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="83"/>
            <end position="86"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="165"/>
            <end position="168"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR035805-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR035805-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="184" mass="20034" checksum="A2D7157281EC5491" modified="2008-05-20" version="1">MLVAIVGPMFAGKTTELIRRVERYVIAGRRAVVFKPSIDARYDPASVAAHNGLKLNAVVVPPDEGGVKAIYKLGQRYDVVAVDEVQFFPPALADVLNKLADGRVVIAAGLNLDFRGEPFETTARLMAYADRVISLTAVCKICGRPATRTQRLVAGKPAPRDSPRIVVGGVETYEARCRLHHRVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8R7</accession>
    <name>B1Y8R7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Type II secretion system protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1219</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350565.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8R7"/>
    <dbReference type="STRING" id="444157.Tneu_1219"/>
    <dbReference type="GeneID" id="6166127"/>
    <dbReference type="KEGG" id="tne:Tneu_1219"/>
    <dbReference type="eggNOG" id="arCOG05611">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_690052_0_0_2"/>
    <dbReference type="OrthoDB" id="28912at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="180"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="309"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="351"/>
            <end position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="398" mass="42669" checksum="B0CE7914ACA2582F" modified="2008-05-20" version="1">MRREDFYIAAAPIFATYLGAVSGAEALKYTSFNAAELDEVEARRLFVSSLMPSPSAAFLEEKEEAARQMGYALAQEEAGVDRSVLVYSYLEGMRALAVAKVEARARLYESITSSLGAVFLLPLFLLFLWAVGVLSVEPLLLLALIYGVTAALGAVAVAAAPHDLDLWRTYEWSLVLGAGAAALAAFISPPAAFIAFGVTTWLWLRARDRAWWFSIRREVPPMLRSVAAMLKEGAPPDVILGRLVGSYKTAAKIAYGYFVPSRYFVLAKAMYKAIVEAGGAAASKAVEYIQALIDIESASVKRVAKLSTAYFSLFIAAVFVLAMATSSAVKQLSAVETGYNPFFSPPPYDEIRQVLSTAMSLVAAGYVAVVLSPLGLHRSTALGGAAGLALQHALQILI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8R8</accession>
    <name>B1Y8R8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1220</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350566.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8R8"/>
    <dbReference type="STRING" id="444157.Tneu_1220"/>
    <dbReference type="GeneID" id="6166123"/>
    <dbReference type="KEGG" id="tne:Tneu_1220"/>
    <dbReference type="eggNOG" id="arCOG05610">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2140293_0_0_2"/>
    <dbReference type="OrthoDB" id="26960at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="112" mass="12610" checksum="CF71DA2CEFE92F83" modified="2008-05-20" version="1">MRGLEKKAVKRGLTASTARWLEELAKELGVGEREMLKAVMKLAKHGIWLEEEDWRVAARSLDLTRHLDMAVDYVIRRVSSGIPPAQAVEELPKAVEKAGRLSHIREVVSNLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8S0</accession>
    <name>B1Y8S0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type II secretion system protein, conjectural</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1222</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350568.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8S0"/>
    <dbReference type="STRING" id="444157.Tneu_1222"/>
    <dbReference type="GeneID" id="6166194"/>
    <dbReference type="KEGG" id="tne:Tneu_1222"/>
    <dbReference type="eggNOG" id="arCOG05609">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040996_0_0_2"/>
    <dbReference type="OrthoDB" id="33500at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050921">
        <property type="entry name" value="T4SS_GSP_E_ATPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30486">
        <property type="entry name" value="TWITCHING MOTILITY PROTEIN PILT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30486:SF6">
        <property type="entry name" value="TYPE IV PILUS RETRACTATION ATPASE PILT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bacterial type II secretion system protein E" evidence="2">
        <location>
            <begin position="266"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="509" mass="57070" checksum="B3C02FDCA823F8A2" modified="2008-05-20" version="1">MIYAHADKSLRSRCWLRREGVIVDRGLRTDVCITEDLMYVVIDPDLPDDLQTALLLVMLRGAVPPDEKEYPKVVKSIAEGLRDRAIWALYRDYREVVHYLLDRWSGARDYMGYGALEAMMKDPLLTEIVIPQATAPAAKYTYVPKNLREQLEYLRFQVVELGRYRRVVAVRNEIRLPTNITIPEPLMYVVVKQLLPSLTMDKPMLTREDPVHKARIAADLIEYNVNIRKTSAYPKPSKALLRPYLSRPRLETERVSSAYSPEGLELLALASLVLETKGGVVFSGGMGSGKTTQLNQLLYLTPPWFQVVVVERGAREIWAPLDGQLLHISVPGEEKLWAALDQALRYGTMHTVVALAEARTPAELRTLVNYKLTGHGALTTMHADTVKDAVLRIVEAEAPPEGLHGMLIIQLSAIGGTRFVKEAKAVVVEGGRAQVAEVSALTPAVSSYVEEMYGVDLKKELALRMEALVKAAEMEDPISARKTIEELLWLKRLDLKTAVKEEASRFGYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8S8</accession>
    <name>B1Y8S8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UspA domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1230</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal stress protein A family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350576.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8S8"/>
    <dbReference type="STRING" id="444157.Tneu_1230"/>
    <dbReference type="GeneID" id="6166107"/>
    <dbReference type="KEGG" id="tne:Tneu_1230"/>
    <dbReference type="eggNOG" id="arCOG02053">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049301_11_1_2"/>
    <dbReference type="OrthoDB" id="105697at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00293">
        <property type="entry name" value="USP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46268">
        <property type="entry name" value="STRESS RESPONSE PROTEIN NHAX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46268:SF25">
        <property type="entry name" value="USPA DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006276">
        <property type="entry name" value="UspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UspA" evidence="2">
        <location>
            <begin position="2"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="137" mass="14556" checksum="DF2521E2D662FACF" modified="2008-05-20" version="1">MDKIVVGYDGSVQAKKALSKAKELAEKFGAKIYIVHVIDTAVLSLSDVFSSPTVLASLREKAEQLVKEAVQTVGGNAEGKILEGDPAHEIVKFAREVNASLIVLGARGLSTIRRVLMGSVSSRVVQESPIDVLIVKG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8T2</accession>
    <name>SECG_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Preprotein translocase subunit SecG</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Protein transport protein Sec61 subunit beta homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">secG</name>
        <name type="ordered locus">Tneu_1234</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in protein export. The function of the beta subunit is unknown, but it may be involved in stabilization of the trimeric complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Component of the protein translocase complex. Heterotrimer consisting of alpha (SecY), beta (SecG) and gamma (SecE) subunits. Can form oligomers of the heterotrimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the SEC61-beta family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350580.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8T2"/>
    <dbReference type="SMR" id="B1Y8T2"/>
    <dbReference type="STRING" id="444157.Tneu_1234"/>
    <dbReference type="GeneID" id="6166047"/>
    <dbReference type="KEGG" id="tne:Tneu_1234"/>
    <dbReference type="eggNOG" id="arCOG02957">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_208205_2_1_2"/>
    <dbReference type="OrthoDB" id="28749at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00751">
        <property type="entry name" value="SecG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023531">
        <property type="entry name" value="Preprot_translocase_SecG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016482">
        <property type="entry name" value="SecG/Sec61-beta/Sbh"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002318">
        <property type="entry name" value="PRK01253.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03911">
        <property type="entry name" value="Sec61_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-0653">Protein transport</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0811">Translocation</keyword>
    <keyword id="KW-0812">Transmembrane</keyword>
    <keyword id="KW-1133">Transmembrane helix</keyword>
    <keyword id="KW-0813">Transport</keyword>
    <feature type="chain" id="PRO_1000196955" description="Preprotein translocase subunit SecG">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="topological domain" description="Cytoplasmic" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="topological domain" description="Extracellular" evidence="1">
        <location>
            <begin position="56"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00751"/>
        </source>
    </evidence>
    <sequence length="57" mass="6299" checksum="FDE44D80B30A9685" modified="2008-05-20" version="1">MARRRRYEGLNPFVAAGLIKFSEEGELERIKLTPKSAVVISVALIAAILVLNLIHPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8T3</accession>
    <name>B1Y8T3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1235</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8T3"/>
    <dbReference type="STRING" id="444157.Tneu_1235"/>
    <dbReference type="KEGG" id="tne:Tneu_1235"/>
    <dbReference type="eggNOG" id="arCOG01024">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_1_4_2"/>
    <dbReference type="OrthoDB" id="200499at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06330">
        <property type="entry name" value="PBP1_As_SBP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051010">
        <property type="entry name" value="BCAA_transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000709">
        <property type="entry name" value="Leu_Ile_Val-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30483:SF37">
        <property type="entry name" value="ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30483">
        <property type="entry name" value="LEUCINE-SPECIFIC-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00337">
        <property type="entry name" value="LEUILEVALBP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="Periplasmic binding protein-like I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Leucine-binding protein" evidence="4">
        <location>
            <begin position="59"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="445" mass="48695" checksum="BA7CFD8F1B4E7776" modified="2008-05-20" version="1">MLRRDLLKIGGGFIVGLAAGYGIGKFFQPATVEVVKPGGTETIKAATTTTATKARPKTFKLAVVAYQSGAASVFGVPAVNMAKLLVDRINAGGGINGVPVELVVRDEAGGPDQMVALYRQLTQQEGVDAYVGLISSADCLAVAPVAEQLGTALTVFFDCATKQLVDKGIMKKVTFRTATTTAQDNVALVKYLLEVKPDFKTVVGINQDYAYGRDNWADFTALLKRLKPDVQILSELWTPLFTTDYSAQIGKILDLKPDLVYTSFWGPDLANFVQQASARGLFKVTTVAFTRGESMLQDLKGSMPPGQIVQAPHYFEYPDPRLNLLNREIAGEYRRRYGSWPPYPAYHMANAILGVKYAYEAAAAVYGVDWPDVGLVAKVFERLAYPSPGDYIMMTPVHNAAKGVVVGTTAEVQGYDFRLLRPYRYMPPAEITPTWPSEEWYKQIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Y7</accession>
    <name>B1Y8Y7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1289</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350635.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Y7"/>
    <dbReference type="STRING" id="444157.Tneu_1289"/>
    <dbReference type="GeneID" id="6165720"/>
    <dbReference type="KEGG" id="tne:Tneu_1289"/>
    <dbReference type="eggNOG" id="arCOG00349">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139698_9_1_2"/>
    <dbReference type="OrthoDB" id="5583at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051269">
        <property type="entry name" value="Fe-S_cluster_ET"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36923">
        <property type="entry name" value="FERREDOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36923:SF3">
        <property type="entry name" value="FERREDOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13459">
        <property type="entry name" value="Fer4_15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="75" mass="8457" checksum="6FF2EF81F8E84982" modified="2008-05-20" version="1">MPVRVKIDRSKCVVAHFCFFYASTVFIPGEGGKPVVAPEYAVNGVEEGVVPDELYEQVKEAERHCPSRAIRVYRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="95" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y921</accession>
    <name>B1Y921_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Thermosome</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1323</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the TCP-1 chaperonin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350669.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y921"/>
    <dbReference type="STRING" id="444157.Tneu_1323"/>
    <dbReference type="GeneID" id="6165170"/>
    <dbReference type="KEGG" id="tne:Tneu_1323"/>
    <dbReference type="eggNOG" id="arCOG01257">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008891_7_3_2"/>
    <dbReference type="OrthoDB" id="9362at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03343">
        <property type="entry name" value="cpn60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.7.10">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="entry name" value="GroEL-like equatorial domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.260.10">
        <property type="entry name" value="TCP-1-like chaperonin intermediate domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017998">
        <property type="entry name" value="Chaperone_TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002194">
        <property type="entry name" value="Chaperonin_TCP-1_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027409">
        <property type="entry name" value="GroEL-like_apical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027410">
        <property type="entry name" value="TCP-1-like_intermed_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053374">
        <property type="entry name" value="TCP-1_chaperonin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054827">
        <property type="entry name" value="thermosome_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012714">
        <property type="entry name" value="Thermosome_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041082">
        <property type="entry name" value="thermosome_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02339">
        <property type="entry name" value="thermosome_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041083">
        <property type="entry name" value="thermosome_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11353">
        <property type="entry name" value="CHAPERONIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00304">
        <property type="entry name" value="TCOMPLEXTCP1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52029">
        <property type="entry name" value="GroEL apical domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="GroEL equatorial domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54849">
        <property type="entry name" value="GroEL-intermediate domain like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00750">
        <property type="entry name" value="TCP1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00751">
        <property type="entry name" value="TCP1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00995">
        <property type="entry name" value="TCP1_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="548" mass="59517" checksum="374967000BFF92D2" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y937</accession>
    <name>B1Y937_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Iron-sulfur cluster loop</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1340</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y937"/>
    <dbReference type="STRING" id="444157.Tneu_1340"/>
    <dbReference type="KEGG" id="tne:Tneu_1340"/>
    <dbReference type="eggNOG" id="arCOG04155">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_835761_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003906">
        <property type="term" value="F:DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000703">
        <property type="term" value="F:oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006285">
        <property type="term" value="P:base-excision repair, AP site formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="entry name" value="Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43286">
        <property type="entry name" value="ENDONUCLEASE III-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43286:SF1">
        <property type="entry name" value="ENDONUCLEASE III-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="DNA-glycosylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="300" mass="34186" checksum="5F3FC0662A918A40" modified="2008-05-20" version="1">MPAVETIDVDRAEAVAGILKSLKPNRDSYLDSRFYPPPEDPVEDQLAFFVTMVAIDHRTSLWEPFEGQIAGEFFHGADALYRLGRLAYDRGFFKAENLAGLTPDKAEALLSLGGKKIWDFNVRVLLMRDVGRKAAARGGFEKMVSRESISGLRRSLEGLRAYEDPVGKKALLLAKFLDGRRLADFKDLEEADVPVDNHLSRVAYRLGIVDISFDFLESGAEVTREEDVRLREVVKTAWRIVAKFADVHPFALDDYLWNFGRRVCTRDAPRCQSCPFKDMCKAYSLSRFPPEHLHLLTWYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y972</accession>
    <name>B1Y972_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1375</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350720.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y972"/>
    <dbReference type="STRING" id="444157.Tneu_1375"/>
    <dbReference type="GeneID" id="6164491"/>
    <dbReference type="KEGG" id="tne:Tneu_1375"/>
    <dbReference type="eggNOG" id="arCOG05568">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2420168_0_0_2"/>
    <dbReference type="OrthoDB" id="27578at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="90" mass="10063" checksum="0079F1B708298E7B" modified="2008-05-20" version="1">MDEAEYISAQVVRYIERKLGDAVKNVTVFVSFAEEGVEVEVDIEASVLVDDAYLQRIADEAAELGICIADLIKERGWPLDSKEAGRCWKN</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y976</accession>
    <name>RL37A_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein eL43</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L37Ae</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Ribosomal protein L43e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl37ae</name>
        <name type="ordered locus">Tneu_1379</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL43 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350724.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y976"/>
    <dbReference type="SMR" id="B1Y976"/>
    <dbReference type="STRING" id="444157.Tneu_1379"/>
    <dbReference type="GeneID" id="6164551"/>
    <dbReference type="KEGG" id="tne:Tneu_1379"/>
    <dbReference type="eggNOG" id="arCOG04208">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_141199_2_0_2"/>
    <dbReference type="OrthoDB" id="372011at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.25.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00327">
        <property type="entry name" value="Ribosomal_eL43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011331">
        <property type="entry name" value="Ribosomal_eL37/eL43"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002674">
        <property type="entry name" value="Ribosomal_eL43"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050522">
        <property type="entry name" value="Ribosomal_protein_eL43"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003058">
        <property type="entry name" value="PRK03976.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48129">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L37A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48129:SF1">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN EL43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01780">
        <property type="entry name" value="Ribosomal_L37ae"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="Zn-binding ribosomal proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <keyword id="KW-0863">Zinc-finger</keyword>
    <feature type="chain" id="PRO_1000116102" description="Large ribosomal subunit protein eL43">
        <location>
            <begin position="1"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="1">
        <location>
            <begin position="40"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="101" mass="11388" checksum="67315D8B90013AE0" modified="2008-05-20" version="1">MPFSHTKIVGPAGRYGARYGMGIRRKITAIEVKQRGKHRCPSCRSLVRLQRIAFGIWKCPKCGFTFAGGAWTPQTIMGKALAPEELKEVEAQKARWRETAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9B0</accession>
    <name>B1Y9B0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1414</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350758.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9B0"/>
    <dbReference type="STRING" id="444157.Tneu_1414"/>
    <dbReference type="GeneID" id="6165380"/>
    <dbReference type="KEGG" id="tne:Tneu_1414"/>
    <dbReference type="eggNOG" id="arCOG00932">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053467_0_0_2"/>
    <dbReference type="OrthoDB" id="372128at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040087">
        <property type="entry name" value="MJ0021-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43288">
        <property type="entry name" value="BIOTIN SYNTHASE-RELATED PROTEIN, RADICAL SAM SUPERFAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43288:SF1">
        <property type="entry name" value="GLYCYL-RADICAL ENZYME ACTIVATING ENZYME MJ0021-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01108">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="17"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="290" mass="31498" checksum="A770DA23E462FA81" modified="2008-05-20" version="1">MAKGCELCLLGAKSVIFITGLCPLSCPYCPVSAERFGKDVMYVNDMPVSRLEDIPRVVAEYASEGAAITGGDPSVVAERVKTVADLLKREFGEGFHIHMYTHVLNLDGRRAGLIASSRVDEVRIHATSISQVRGREKYVKALAASGKTVGAEVPALPGLERQIAEAVNALAPYISFVNINELDISETNRERLRAMGYKAEGLNVAGSLEAARKIAEMVTVPAHICTGRSKDLIQMGTRLFRHAMATAAPAEHVQDDGTVAYDEEGRHPRSLSARKIRIKLKTGEKTLEIQ</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9D1</accession>
    <name>ENDA_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA-splicing endonuclease</fullName>
            <ecNumber evidence="1">4.6.1.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA-intron endonuclease</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">endA</name>
        <name type="ordered locus">Tneu_1435</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>pretRNA = a 3'-half-tRNA molecule with a 5'-OH end + a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end + an intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus.</text>
            <dbReference type="EC" id="4.6.1.16"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homotetramer; although the tetramer contains four active sites, only two participate in the cleavage. Therefore, it should be considered as a dimer of dimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the tRNA-intron endonuclease family. Archaeal short subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.6.1.16" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350779.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9D1"/>
    <dbReference type="SMR" id="B1Y9D1"/>
    <dbReference type="STRING" id="444157.Tneu_1435"/>
    <dbReference type="GeneID" id="6164660"/>
    <dbReference type="KEGG" id="tne:Tneu_1435"/>
    <dbReference type="eggNOG" id="arCOG01701">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114393_0_0_2"/>
    <dbReference type="OrthoDB" id="46045at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000213">
        <property type="term" value="F:tRNA-intron lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006388">
        <property type="term" value="P:tRNA splicing, via endonucleolytic cleavage and ligation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd22363">
        <property type="entry name" value="tRNA-intron_lyase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1350.10:FF:000006">
        <property type="entry name" value="tRNA-splicing endonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1170.20">
        <property type="entry name" value="tRNA intron endonuclease, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01833">
        <property type="entry name" value="EndA_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036167">
        <property type="entry name" value="tRNA_intron_Endo_cat-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006677">
        <property type="entry name" value="tRNA_intron_Endonuc_cat-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006678">
        <property type="entry name" value="tRNA_intron_Endonuc_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036740">
        <property type="entry name" value="tRNA_intron_Endonuc_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006676">
        <property type="entry name" value="tRNA_splic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016442">
        <property type="entry name" value="tRNA_splic_arch_short"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00324">
        <property type="entry name" value="endA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21227">
        <property type="entry name" value="TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21227:SF0">
        <property type="entry name" value="TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01974">
        <property type="entry name" value="tRNA_int_endo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02778">
        <property type="entry name" value="tRNA_int_endo_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005285">
        <property type="entry name" value="tRNA_splic_archaea"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53032">
        <property type="entry name" value="tRNA-intron endonuclease catalytic domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55267">
        <property type="entry name" value="tRNA-intron endonuclease N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <feature type="chain" id="PRO_1000188342" description="tRNA-splicing endonuclease">
        <location>
            <begin position="1"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01833"/>
        </source>
    </evidence>
    <sequence length="183" mass="20350" checksum="C82380BB0FBA252E" modified="2008-05-20" version="1">MSGVLRGLAVVVQDVELARALYREGFYGRFLGYDKVKRDEVDKVSAPLILALYEALYLAERGRIKVVAEDGAEIPPEKLAELGRGMIRNFDDVYKIYKYFRDLGYVVKSGLKFGALFSVYEKGPGIDHAPMVVVFLEPDRGISATDITRGGRLGHSVKKTFTLATVLRQTGEVVLLGFSWAKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9L6</accession>
    <name>B1Y9L6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1521</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350864.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9L6"/>
    <dbReference type="STRING" id="444157.Tneu_1521"/>
    <dbReference type="GeneID" id="6166105"/>
    <dbReference type="KEGG" id="tne:Tneu_1521"/>
    <dbReference type="eggNOG" id="arCOG03773">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1821085_0_0_2"/>
    <dbReference type="OrthoDB" id="147504at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase" evidence="1">
        <location>
            <begin position="40"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="137" mass="15781" checksum="F141CD365FCFD7AB" modified="2008-05-20" version="1">METDHVLELYRKLAPLYEEVYGVEQRRKYWMISSQVGEKVVDAGCGVGIAYEVLQSYVVCLDISIDMLAKARERASCRGDLVQADYWKPPFREGAFHSALFLSSADPKDFGALYERWRRVAARAYFEFRGSWLVLPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9S8</accession>
    <name>B1Y9S8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PfkB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1554</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350897.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9S8"/>
    <dbReference type="STRING" id="444157.Tneu_1554"/>
    <dbReference type="GeneID" id="6165433"/>
    <dbReference type="KEGG" id="tne:Tneu_1554"/>
    <dbReference type="eggNOG" id="arCOG00016">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065902_3_1_2"/>
    <dbReference type="OrthoDB" id="26949at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="Ribokinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carbohydrate kinase PfkB" evidence="1">
        <location>
            <begin position="163"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="256" mass="27748" checksum="A37A52FB035D1F8E" modified="2008-05-20" version="1">MEIVVASNPTVDIVYTSSGVSRRLGGPIYYASQALSALHANARAVGVASLDVAAELERVLAALGIVAEVIIADATTTFELDYRTKPRTVKLVRKPSIGIGKVRGDVVILSPVYDELRNARVEAKAVVADLQGYLRSSTEPPQADLVHFSQDDLVLSLKELVEFAGRWPTAVYTLGEDGAYVVQRGSIHYVNSARIPVEDVTGSGDVFLASLTYLRYVKGLDLLQAVCEASKYVAGFLKHRRVVRHDFDCTIQAVQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9T2</accession>
    <name>B1Y9T2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Damage-control phosphatase ARMT1-like metal-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1558</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9T2"/>
    <dbReference type="STRING" id="444157.Tneu_1558"/>
    <dbReference type="KEGG" id="tne:Tneu_1558"/>
    <dbReference type="eggNOG" id="arCOG04410">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071520_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.285.20">
        <property type="entry name" value="Uncharacterised protein PF01937, DUF89, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10880">
        <property type="entry name" value="Uncharacterised protein PF01937, DUF89, domain 3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036075">
        <property type="entry name" value="ARMT-1-like_metal-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002791">
        <property type="entry name" value="ARMT1-like_metal-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014444">
        <property type="entry name" value="PH1575-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01937">
        <property type="entry name" value="ARMT1-like_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006593">
        <property type="entry name" value="UCP006593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111321">
        <property type="entry name" value="AF1104-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Damage-control phosphatase ARMT1-like metal-binding" evidence="1">
        <location>
            <begin position="3"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="259" mass="29005" checksum="C2C193AE5D9E6B73" modified="2008-05-20" version="1">MSCKLCIITSRTGDLIRLQKPDKLPQILSELSQLIQRSSRSEAFAMSFQTVAKLAGSEDPYRDYKEKLAAIGKRVAEAVRQRLQETSWDLKTALRIAAAANIVDTSVLGYRPKKLEEAVWDLPAIEEYVDLPQNVYYVLDNSGEAQIDLVIAEALERNGIRPTFVVRSEPYEIDVLERDLSGYRVLATPGNISPVRWIRDGFIVAKGIANFEAYMEWGETPALLLFRAKCDVLSRVFSVPRNSPIIISGEKAKAISLSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9T6</accession>
    <name>B1Y9T6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1562</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350905.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9T6"/>
    <dbReference type="STRING" id="444157.Tneu_1562"/>
    <dbReference type="GeneID" id="6166285"/>
    <dbReference type="KEGG" id="tne:Tneu_1562"/>
    <dbReference type="eggNOG" id="arCOG04153">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_142666_0_0_2"/>
    <dbReference type="OrthoDB" id="31046at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="146" mass="16624" checksum="C1EE69E716890E0A" modified="2008-05-20" version="1">MAAQEFTEDSDVLTEVEIQILQGLERLGGSYQQRNLWKYIGIDSKTGLPILARLEKRGLIARERVGGNKRGVYVIKLTEKAYRLLGKIREESVESFTINVESMPREIRTLLSIPCVYCPYSDRCGIGFIAPHTCDLLTKWVSRFTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9T7</accession>
    <name>B1Y9T7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Zinc finger TFIIB-type domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1563</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TFIIB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350906.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9T7"/>
    <dbReference type="STRING" id="444157.Tneu_1563"/>
    <dbReference type="GeneID" id="6164769"/>
    <dbReference type="KEGG" id="tne:Tneu_1563"/>
    <dbReference type="eggNOG" id="arCOG01981">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043736_0_1_2"/>
    <dbReference type="OrthoDB" id="7429at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097550">
        <property type="term" value="C:transcription preinitiation complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017025">
        <property type="term" value="F:TBP-class protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070897">
        <property type="term" value="P:transcription preinitiation complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.10">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013763">
        <property type="entry name" value="Cyclin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036915">
        <property type="entry name" value="Cyclin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000812">
        <property type="entry name" value="TFIIB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013150">
        <property type="entry name" value="TFIIB_cyclin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013137">
        <property type="entry name" value="Znf_TFIIB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11618:SF13">
        <property type="entry name" value="TRANSCRIPTION INITIATION FACTOR IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11618">
        <property type="entry name" value="TRANSCRIPTION INITIATION FACTOR IIB-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00382">
        <property type="entry name" value="TFIIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08271">
        <property type="entry name" value="Zn_Ribbon_TF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00685">
        <property type="entry name" value="TIFACTORIIB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00385">
        <property type="entry name" value="CYCLIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47954">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57783">
        <property type="entry name" value="Zinc beta-ribbon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51134">
        <property type="entry name" value="ZF_TFIIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="TFIIB-type" evidence="6">
        <location>
            <begin position="10"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="298" mass="33277" checksum="20FE655C54CDC1CA" modified="2008-05-20" version="1">MTRRLIFELEEYRCPTCGAVNDVAVDYERGQVVCRSCGTVLRESIADLGPEWRRPESSRAHAGPVGSSLGDIEYGNIKIMDKLKAISLKKFARPLTTPLERVEIDIREFLDSAREKLNLHPSIVEETVQLYKRLYEAGYRAPRLEGYAAALLFTLKSRGVAAVTPKTLYEQLGVDRSAFQSAYMELLKVANSLGLRPPRTDPKIYIPKIVAALGIGDEKTAEVLRIAVDILRYIMSSPRIRNGRKPQVLAAAAVYYACYLAGVEVTQKELAKAADSTEGPVRELLKELSERLYIEITL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA05</accession>
    <name>B1YA05_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1632</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350974.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA05"/>
    <dbReference type="STRING" id="444157.Tneu_1632"/>
    <dbReference type="GeneID" id="6165781"/>
    <dbReference type="KEGG" id="tne:Tneu_1632"/>
    <dbReference type="eggNOG" id="arCOG07065">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_184186_0_0_2"/>
    <dbReference type="OrthoDB" id="28707at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="75" mass="8398" checksum="ADE050B4517A65E2" modified="2008-05-20" version="1">MEVVMVFKGRPPESWRGIPGVRAIAAEELGEVEGRFVLVVGDWELARRLGVGFLAEEEAEELLAYMRKRLGVDPN</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA16</accession>
    <name>TFE_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transcription factor E</fullName>
            <shortName evidence="1">TFE</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">TFIIE subunit alpha homolog</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Transcription initiation factor TFIIE</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">tfe</name>
        <name type="ordered locus">Tneu_0032</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems to translocate with the RNA polymerase following initiation and acts by binding to the non template strand of the transcription bubble in elongation complexes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer. Interaction with RNA polymerase subunits RpoF and RpoE is necessary for Tfe stimulatory transcription activity. Able to interact with Tbp and RNA polymerase in the absence of DNA promoter. Interacts both with the preinitiation and elongation complexes.</text>
    </comment>
    <comment type="domain">
        <text evidence="1">The winged helix domain is involved in binding to DNA in the preinitiation complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TFE family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349412.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA16"/>
    <dbReference type="SMR" id="B1YA16"/>
    <dbReference type="STRING" id="444157.Tneu_0032"/>
    <dbReference type="GeneID" id="6164403"/>
    <dbReference type="KEGG" id="tne:Tneu_0032"/>
    <dbReference type="eggNOG" id="arCOG04270">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100097_1_0_2"/>
    <dbReference type="OrthoDB" id="5935at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006367">
        <property type="term" value="P:transcription initiation at RNA polymerase II promoter"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01909">
        <property type="entry name" value="TFE_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016481">
        <property type="entry name" value="TF_E_archaea"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017919">
        <property type="entry name" value="TFIIE/TFIIEa_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002853">
        <property type="entry name" value="TFIIE_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024550">
        <property type="entry name" value="TFIIEa/SarR/Rpc3_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02002">
        <property type="entry name" value="TFIIE_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006373">
        <property type="entry name" value="TF_E_archaea"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00531">
        <property type="entry name" value="TFIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51344">
        <property type="entry name" value="HTH_TFE_IIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0238">DNA-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0804">Transcription</keyword>
    <keyword id="KW-0805">Transcription regulation</keyword>
    <feature type="chain" id="PRO_1000188787" description="Transcription factor E">
        <location>
            <begin position="1"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="HTH TFE/IIEalpha-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01909"/>
        </source>
    </evidence>
    <sequence length="170" mass="19771" checksum="169BF0D2476D4F65" modified="2008-05-20" version="1">MKEAYLYIVEKSVAWEFDSPEYGRLARKVVELLYDRKEDLTDDRVAILLNISTAETRRILQYLMKLGLVGVKKRTTEDYRIEYTWYVDDDVIRQAIKNRAKVAKEKISSLIKSLTEGAYYVCPTCHMRYTLDQAVNYGGVCPVCGTQLEYVENVEEIDKLTKAYESIDKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA47</accession>
    <name>B1YA47_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0063</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349442.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA47"/>
    <dbReference type="STRING" id="444157.Tneu_0063"/>
    <dbReference type="GeneID" id="6164373"/>
    <dbReference type="KEGG" id="tne:Tneu_0063"/>
    <dbReference type="eggNOG" id="arCOG05462">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_431910_0_0_2"/>
    <dbReference type="OrthoDB" id="28970at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="28"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="633" mass="67297" checksum="4CC1F2AE7FCD19B8" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA55</accession>
    <name>B1YA55_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0071</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349450.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA55"/>
    <dbReference type="STRING" id="444157.Tneu_0071"/>
    <dbReference type="GeneID" id="6165074"/>
    <dbReference type="KEGG" id="tne:Tneu_0071"/>
    <dbReference type="eggNOG" id="arCOG05464">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_138325_1_0_2"/>
    <dbReference type="OrthoDB" id="30814at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="74"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="111" mass="12526" checksum="BDE4F5388A98FE68" modified="2008-05-20" version="1">MAQRTQCLGPRCAFGPNGTSLFRCGKKALKPTIRGNKIVFWCTWLNDECIGAKCQYAYCEARAMTPEGFCTYKAAGGEEQKRDILAEVKKMEQEVEKIRAHLKRQGLGDYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA68</accession>
    <name>B1YA68_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Oxidoreductase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0084</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349463.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA68"/>
    <dbReference type="STRING" id="444157.Tneu_0084"/>
    <dbReference type="GeneID" id="6164537"/>
    <dbReference type="KEGG" id="tne:Tneu_0084"/>
    <dbReference type="eggNOG" id="arCOG01622">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023194_10_2_2"/>
    <dbReference type="OrthoDB" id="25239at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.10">
        <property type="entry name" value="Dihydrodipicolinate Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051450">
        <property type="entry name" value="Gfo/Idh/MocA_Oxidoreductases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055170">
        <property type="entry name" value="GFO_IDH_MocA-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43377">
        <property type="entry name" value="BILIVERDIN REDUCTASE A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43377:SF1">
        <property type="entry name" value="BILIVERDIN REDUCTASE A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22725">
        <property type="entry name" value="GFO_IDH_MocA_C3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55347">
        <property type="entry name" value="Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gfo/Idh/MocA-like oxidoreductase N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="GFO/IDH/MocA-like oxidoreductase" evidence="2">
        <location>
            <begin position="146"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF22725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="312" mass="34653" checksum="B2D368360C9A674D" modified="2008-05-20" version="1">MKVAVVGIGGWGKNHLRVVTQLKGEDLVEVVYAVDIDEARLRWAERVYGARPVKGVEKAQDLDVDAAIIATPTSLHAAHAAVFLSRGIATLVEKPFAASLREAHELLDAAGGTLVTTGYLLRFHQGVRHVRNNLGRLGRFLTAYGKRTSRWPVRPGDVGVIKDLAIHDVDLLTYITGRRAASVYALGGSTRGQYEDHAQIFARYDGASAIFEANWLTPYRFRKLELTGDQGIYVVDFATDEVYFYGEEGVYRPRIEMAEPLLVQDREFIKAAAGRGGEVVDREDILYTMRFCEAAVESIKTGRVVYLDELHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA78</accession>
    <name>B1YA78_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0094</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349473.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA78"/>
    <dbReference type="STRING" id="444157.Tneu_0094"/>
    <dbReference type="GeneID" id="6164366"/>
    <dbReference type="KEGG" id="tne:Tneu_0094"/>
    <dbReference type="eggNOG" id="arCOG03737">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1607215_0_0_2"/>
    <dbReference type="OrthoDB" id="26648at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="163" mass="18688" checksum="5250AF91D29145C1" modified="2008-05-20" version="1">MEELRFSLRKSDFDKFAERLGVRPEELLNELKAEVVKVGPGFRYVIDMEDFFYFVVSRLYGQRKAERPGAAPPEKFEEVLNKAIDRFAGASGYAKLVDVRNAVVQELGIGEEEFGRRLAELIQAKRGQYVLLEGGDLKVQIGAKKYGFIKRIERRSVAEVVYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="35" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA90</accession>
    <name>B1YA90_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0106</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349485.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA90"/>
    <dbReference type="STRING" id="444157.Tneu_0106"/>
    <dbReference type="GeneID" id="6166018"/>
    <dbReference type="KEGG" id="tne:Tneu_0106"/>
    <dbReference type="HOGENOM" id="CLU_2340304_0_0_2"/>
    <dbReference type="OrthoDB" id="381344at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="97" mass="10385" checksum="D76495A566106415" modified="2008-05-20" version="1">MSLYIVDGRVVKAEGVEERHAELIAAMLKAAERHLEAVEEFYIRIEGVEYVGRARGGAAVAVKVGGEPRGVALLRAGELLEAYLSSASNSSTIRKAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAB9</accession>
    <name>B1YAB9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1646</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350987.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAB9"/>
    <dbReference type="STRING" id="444157.Tneu_1646"/>
    <dbReference type="GeneID" id="6165627"/>
    <dbReference type="KEGG" id="tne:Tneu_1646"/>
    <dbReference type="eggNOG" id="arCOG00260">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040769_0_1_2"/>
    <dbReference type="OrthoDB" id="86231at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06580">
        <property type="entry name" value="TM_PBP1_transp_TpRbsC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47089">
        <property type="entry name" value="ABC TRANSPORTER, PERMEASE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47089:SF1">
        <property type="entry name" value="GUANOSINE ABC TRANSPORTER PERMEASE PROTEIN NUPP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="49"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="83"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="105"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="138"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="178"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="231"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="272"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="335" mass="35382" checksum="4003B581C8BD92B3" modified="2008-05-20" version="1">MRRLLLSILNTAVALAAAFAIGAAAMWATGYDPVASYSAMLFTPLADRVYLLSALAFSAPIVLTGLTFAVGLRAGLFNIGGEGQVYMGALGAVAASYLARNAAALPLAVALGVALAVAWSAVPALLRIWRGVNEVISTIMMNWVAYWLVIMLVSTVFVNPLQPEESIKTPEEARLQPLVAGTDLTLAVPLAYAAAVLTYIFVRYSVWGYRISISGQNPLVAKAYGVKPERALLLAFVVGAVAAGLAGVLQVVARPPSYSLARNLANVYGLGFDGITAAMLGRGHPLAVALAAVFLGILQEGARHMQIEAGTPFEYVRIIQGLIILFLAIQMLRRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAH8</accession>
    <name>B1YAH8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposase IS605 OrfB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1707</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351046.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAH8"/>
    <dbReference type="GeneID" id="6165455"/>
    <dbReference type="KEGG" id="tne:Tneu_1707"/>
    <dbReference type="eggNOG" id="arCOG00687">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053996_0_0_2"/>
    <dbReference type="OrthoDB" id="28072at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010095">
        <property type="entry name" value="Cas12f1-like_TNB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07282">
        <property type="entry name" value="Cas12f1-like_TNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51998">
        <property type="entry name" value="PFL-like glycyl radical enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cas12f1-like TNB" evidence="2">
        <location>
            <begin position="330"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="420" mass="48967" checksum="A0798B96FF7690F4" modified="2008-05-20" version="1">MGVYRALKIRLPYRLVEERPDVLDLAVRMHLAAEEYARRLLKELTGQEELKLTPEELDALLTPDKKELAHRIIEETFPKYGLRKYFIDQAKVFWRDVVFHRMIPLNAQLRIENERDRSKAVFVDLKNGVIKVRRLEGTFVIRIREKTAKWIRERIAEGAKLKLAFLGIERQRGKREPTYRKFYVALVFAREVTPVEPRGVVAVDVNRLDHGIVAGLLVDGKLRHTLRLPGERAIKELKRLHEEISRLDERAAGEADPAKRRQLEDRVRYLKSKRYRKIRGVVKDVVGEIIKLAREHQAAIVVDTMEEETYRELKEGSWSGEKKHLLDGLGQLRRRLKELAEWYGLPYLEERLYSTVCPRCGAEMEELNNRRMRCPSCGFNDDRDNIPLLWAKRLYNELIAKAVAGAQTTSAQMALSQTQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="39" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAI2</accession>
    <name>B1YAI2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1711</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351050.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAI2"/>
    <dbReference type="STRING" id="444157.Tneu_1711"/>
    <dbReference type="GeneID" id="6165508"/>
    <dbReference type="KEGG" id="tne:Tneu_1711"/>
    <dbReference type="HOGENOM" id="CLU_2875237_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="63" mass="6935" checksum="B8D92CD647333E96" modified="2008-05-20" version="1">MAEVAKAHGVSQSRGSQKQVLWLRAGYTRGVRVEVLVNATGLGPYNAARRREVSQKAKSEQPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAK4</accession>
    <name>B1YAK4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA topoisomerase</fullName>
            <ecNumber evidence="3">5.6.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1735</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP-independent breakage of single-stranded DNA, followed by passage and rejoining.</text>
            <dbReference type="EC" id="5.6.2.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the type IA topoisomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.1" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351072.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAK4"/>
    <dbReference type="STRING" id="444157.Tneu_1735"/>
    <dbReference type="GeneID" id="6164419"/>
    <dbReference type="KEGG" id="tne:Tneu_1735"/>
    <dbReference type="eggNOG" id="arCOG01527">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002929_1_4_2"/>
    <dbReference type="OrthoDB" id="30963at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003917">
        <property type="term" value="F:DNA topoisomerase type I (single strand cut, ATP-independent) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00186">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01028">
        <property type="entry name" value="TOPRIM_TopoIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.290.10:FF:000001">
        <property type="entry name" value="DNA topoisomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.460.10">
        <property type="entry name" value="Topoisomerase I, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.20.10">
        <property type="entry name" value="Topoisomerase I, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.290.10">
        <property type="entry name" value="Topoisomerase I, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000380">
        <property type="entry name" value="Topo_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003601">
        <property type="entry name" value="Topo_IA_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013497">
        <property type="entry name" value="Topo_IA_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013824">
        <property type="entry name" value="Topo_IA_cen_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013825">
        <property type="entry name" value="Topo_IA_cen_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013826">
        <property type="entry name" value="Topo_IA_cen_sub3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023405">
        <property type="entry name" value="Topo_IA_core_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003602">
        <property type="entry name" value="Topo_IA_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11390:SF21">
        <property type="entry name" value="DNA TOPOISOMERASE 3-ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11390">
        <property type="entry name" value="PROKARYOTIC DNA TOPOISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01131">
        <property type="entry name" value="Topoisom_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00417">
        <property type="entry name" value="PRTPISMRASEI"/>
    </dbReference>
    <dbReference type="SMART" id="SM00437">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00436">
        <property type="entry name" value="TOP1Bc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56712">
        <property type="entry name" value="Prokaryotic type I DNA topoisomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52039">
        <property type="entry name" value="TOPO_IA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="Toprim" evidence="8">
        <location>
            <begin position="1"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="Topo IA-type catalytic" evidence="9">
        <location>
            <begin position="156"/>
            <end position="575"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="564"/>
            <end position="595"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS52039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="604" mass="68339" checksum="5103F534C3114031" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAN4</accession>
    <name>B1YAN4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase</fullName>
            <ecNumber evidence="5">5.3.1.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0156</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamide = 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:15469"/>
            <dbReference type="ChEBI" id="CHEBI:58435"/>
            <dbReference type="ChEBI" id="CHEBI:58525"/>
            <dbReference type="EC" id="5.3.1.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 4/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the HisA/HisF family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.16" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349534.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAN4"/>
    <dbReference type="STRING" id="444157.Tneu_0156"/>
    <dbReference type="GeneID" id="6164438"/>
    <dbReference type="KEGG" id="tne:Tneu_0156"/>
    <dbReference type="eggNOG" id="arCOG00618">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048577_1_1_2"/>
    <dbReference type="OrthoDB" id="52866at2157"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00009"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003949">
        <property type="term" value="F:1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:L-histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:L-tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04732">
        <property type="entry name" value="HisA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006062">
        <property type="entry name" value="His_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023016">
        <property type="entry name" value="HisA/PriA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044524">
        <property type="entry name" value="Isoase_HisA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43090">
        <property type="entry name" value="1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43090:SF2">
        <property type="entry name" value="1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00977">
        <property type="entry name" value="His_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="Ribulose-phoshate binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 11" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00018464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="230" mass="24345" checksum="201B54B1D591BF1E" modified="2008-05-20" version="1">MIIPSIDIEGGRAVKRVQGRRGEYIFVGDPLELARRFSRADLVHVVDLDGAEAGRPVNTSIVEKVARELGGRCQLGGGLRSAEAVEWALSLCRYAVVGSMPFKNPSLFASVAARYRSRLVVSLDVRGGFVVTDGWTKAAATPEEAAAAIKPHGPLAALVITSVDVEGTGAGFRLPVDLAKLRDVAARLYYAGGVNSCVDVEKALKAGFDGVIVGYALYRGDLKNCAGFIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAN8</accession>
    <name>B1YAN8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">5'-deoxynucleotidase</fullName>
            <ecNumber evidence="5">3.1.3.89</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0160</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyribonucleoside 5'-phosphate + H2O = a 2'-deoxyribonucleoside + phosphate</text>
            <dbReference type="Rhea" id="RHEA:36167"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18274"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:65317"/>
            <dbReference type="EC" id="3.1.3.89"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.89" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349538.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAN8"/>
    <dbReference type="STRING" id="444157.Tneu_0160"/>
    <dbReference type="GeneID" id="6164963"/>
    <dbReference type="KEGG" id="tne:Tneu_0160"/>
    <dbReference type="eggNOG" id="arCOG04311">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039453_4_2_2"/>
    <dbReference type="OrthoDB" id="46088at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002953">
        <property type="term" value="F:5'-deoxynucleotidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3210.10">
        <property type="entry name" value="Hypothetical protein af1432"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039356">
        <property type="entry name" value="YfbR/HDDC2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11845">
        <property type="entry name" value="5'-DEOXYNUCLEOTIDASE HDDC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11845:SF13">
        <property type="entry name" value="5'-DEOXYNUCLEOTIDASE HDDC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13023">
        <property type="entry name" value="HD_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109604">
        <property type="entry name" value="HD-domain/PDEase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD/PDEase" evidence="8">
        <location>
            <begin position="26"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="176" mass="19809" checksum="72C9F75C0368F2C6" modified="2008-05-20" version="1">MTDLLAVVDTLCKTPRVGWLQRGAWDAESVCAHSLLVTLLAGEIAARLNAEGAEINMAEVLAVAAVHDLAEAVLGHPGREVRDRLRWEELEEEIFKREFPHLAELFRWYRYETNTVGKIVAFADKLATLIRACRYKQLGYPTDDLAKALYKKLMAYDGLAHILDYYVGRYCGGVLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAP6</accession>
    <name>B1YAP6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0169</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349546.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAP6"/>
    <dbReference type="STRING" id="444157.Tneu_0169"/>
    <dbReference type="GeneID" id="6164651"/>
    <dbReference type="KEGG" id="tne:Tneu_0169"/>
    <dbReference type="eggNOG" id="arCOG03746">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_153001_0_0_2"/>
    <dbReference type="OrthoDB" id="24177at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="110" mass="12404" checksum="1E235BA0E00B8838" modified="2008-05-20" version="1">MNHRFNLSDFRTVLKTVHLGMQKIVGEARGSCVSFTPRKVLEFGGVDTTAPVALTLVKHILEKLVESGMMQRDDSRARTRYILCKNSPLWQKLRGGDADTLKMLEEITAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAQ6</accession>
    <name>B1YAQ6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">2-oxoacid oxidoreductase (ferredoxin)</fullName>
            <ecNumber evidence="2">1.2.7.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0179</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a 2-oxocarboxylate + 2 oxidized [2Fe-2S]-[ferredoxin] + CoA = an acyl-CoA + 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:42316"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="1.2.7.11"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterodimer composed of an alpha and a beta subunit.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.11" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349556.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAQ6"/>
    <dbReference type="STRING" id="444157.Tneu_0179"/>
    <dbReference type="GeneID" id="6164703"/>
    <dbReference type="KEGG" id="tne:Tneu_0179"/>
    <dbReference type="eggNOG" id="arCOG01601">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058423_0_0_2"/>
    <dbReference type="OrthoDB" id="296931at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018491">
        <property type="term" value="F:2-oxobutyrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03376">
        <property type="entry name" value="TPP_PFOR_porB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.970">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051479">
        <property type="entry name" value="PorB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme_TPP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42897">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42897:SF2">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiamine pyrophosphate enzyme TPP-binding" evidence="5">
        <location>
            <begin position="50"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00048893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="319" mass="35691" checksum="C3A93ADCE3898D06" modified="2008-05-20" version="1">MKIYYKTLRDLPREELFAPGHRMCAGCGAALAMRWITKTVGPNAVVVNATGCVEVTTTPYPETAWMHPYLHVAFENSAAAASGVEAAIRALRRKGLWDAGDTKVVVIAGDGGTYDIGLQSLSGMLERRHRVLYILYDNEAYMNTGIQRSGATPKFAWTTTTPVGMAVRGKIQWKKDIMGIVTAHRPPYAATASVSYVLDMVNKIKTALDYAEEGPTFLHILAPCVPGWRYPENKTVEVARLAVETGYFPLYEWDHGRFILNPPSNAHLDRSRRRPLKDYLRLQGRFAHLTDEEIAELEKELDAYWQYLAKLAQAFGPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAR6</accession>
    <name>B1YAR6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0189</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349566.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAR6"/>
    <dbReference type="STRING" id="444157.Tneu_0189"/>
    <dbReference type="GeneID" id="6164845"/>
    <dbReference type="KEGG" id="tne:Tneu_0189"/>
    <dbReference type="eggNOG" id="arCOG00174">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036171_2_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42744">
        <property type="entry name" value="BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEMS INNER MEMBRANE COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42744:SF1">
        <property type="entry name" value="BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEMS INNER MEMBRANE COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="56"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="81"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="183"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="231"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="276"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="304"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="329"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="371"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="426"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="8"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="269"/>
            <end position="445"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="458" mass="48934" checksum="F07A5886CA39FD67" modified="2008-05-20" version="1">MAEALALSILSLLATFGRMALALVFTVAVAYALAYAMWRSRRVEAVMLPVLDVMQSVPVLGFFPIALYIFVYFVPWIGAELAAQFLIFTSMAWNMIFGIYQAFKTLPRELLDMSRVYLNERLELAHVFLPAALRSVYYNAAVSWANAFFFITASEVITLGTEVKLFGIGSFVVDAFERGDTTAAYVGIAVGVAGNVALYFLLWRRLMRDVPQPPSALAEIFTPWIKHGSHAVFASAALLLAAALYYAMRSPPPPATGLLEGFAQSLASVAPTSARVLAALGISAAVGIAAVALVVRKPEAETPILLALSALSSVPAVFLYPLIGSVARGEALAVALLLPGSIVYTALNAVAAWRDVPRDFVKAYGVRGAVYYVHVLLPAALPYLVTGLLTAWGGAWNATIVAEPLADVAGLGAYMTQAAQAGNTPALAASVAVMSAVVIVVNKLVWRRLYNLASQWHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAS3</accession>
    <name>B1YAS3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0196</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAS3"/>
    <dbReference type="STRING" id="444157.Tneu_0196"/>
    <dbReference type="KEGG" id="tne:Tneu_0196"/>
    <dbReference type="eggNOG" id="arCOG01290">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015525_2_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040086">
        <property type="entry name" value="MJ0683-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43432">
        <property type="entry name" value="SLR0285 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43432:SF3">
        <property type="entry name" value="SLR0285 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01084">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="4">
        <location>
            <begin position="17"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="297" mass="33063" checksum="E3BCD6669D4D5816" modified="2008-05-20" version="1">MNTQVVKPFDPWRNPLCTCPPKYGLNPYTGCGHGCLYCYITSYIPNAFSPRPKEGLAERVRRDLEKIPRGAVVALSNSSDPYTPPEATLGLTRKVLHILLERGYRVLITTKSPLVLRDLDLFRRYRGRVVVQITITTLRSDVAAALEPGAPQPAGRLEAVRRLSAEGVPVGVRLDPIVPYVNDGVENIEEVAAAAAGAAQLVASTYKAKPDSLARLRRAFPDKAPLWRRLYFEEGRYFHGQWYAAESYRRNVLELAAAAARRHGLQFTVCREEFTDLNTPGAYCDGSHLLAEVPQEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAV2</accession>
    <name>B1YAV2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC-2 type transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0226</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349602.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAV2"/>
    <dbReference type="STRING" id="444157.Tneu_0226"/>
    <dbReference type="GeneID" id="6164423"/>
    <dbReference type="KEGG" id="tne:Tneu_0226"/>
    <dbReference type="eggNOG" id="arCOG01462">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_728855_0_0_2"/>
    <dbReference type="OrthoDB" id="29156at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC2_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43471">
        <property type="entry name" value="ABC TRANSPORTER PERMEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43471:SF1">
        <property type="entry name" value="ABC TRANSPORTER PERMEASE PROTEIN NOSY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12698">
        <property type="entry name" value="ABC2_membrane_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="163"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="211"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="268"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="303"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="357"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="domain" description="ABC-2 type transporter transmembrane" evidence="6">
        <location>
            <begin position="21"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="383" mass="40965" checksum="4D5ADE7B7FB32B88" modified="2008-05-20" version="1">MGVLTALVVKDLREILASRYFILSLVGGFAALVFMGLLMGASIRGAAAAQKFAVVANDTNELGRLYVEKLRELGGVVYGEFTPELLEKYSYVVVVPRNFTFPARLEVYRRYSGFPSLVAPAVLRTAAEELAKRAGVPPALVNVTLRLYFDGAWLGEAEAGALLSLYMVSFVATLMVPLLVAATAAIAVGVEKEKRTFELILATPATPSALVLSKLVSSILLMLIQFAVFLAGYGVYFANLANLPNFVGGAPPPELPRPGLHVSIPPGALALSALSILAMSIFVVAVSFALASRAEDIKTAQSVATTAVFFFAAPAVAVFFAPTDWLKLDPLLHPLYIALAALFGRWGEALLLLTADWALAAVALYIVSRIVTAEYLIAGRRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAZ0</accession>
    <name>B1YAZ0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1772</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351109.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAZ0"/>
    <dbReference type="STRING" id="444157.Tneu_1772"/>
    <dbReference type="GeneID" id="6165391"/>
    <dbReference type="KEGG" id="tne:Tneu_1772"/>
    <dbReference type="eggNOG" id="arCOG05644">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1044281_0_0_2"/>
    <dbReference type="OrthoDB" id="27282at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009898">
        <property type="term" value="C:cytoplasmic side of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051782">
        <property type="term" value="P:negative regulation of cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050625">
        <property type="entry name" value="ParA/MinD_ATPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43384:SF10">
        <property type="entry name" value="ATPASE INVOLVED IN CHROMOSOME PARTITIONING, PARA_MIND FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43384">
        <property type="entry name" value="SEPTUM SITE-DETERMINING PROTEIN MIND HOMOLOG, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="255" mass="27920" checksum="833D036D4EA2EDA2" modified="2008-05-20" version="1">MKRILFLSGTKGGTGKTTVALNTAVLLAYLWRDAAAYPVVFLDLTPNVGTAALVLMGDPLATWGRPSLSDFFAGRLGDPLRGFYMRRWNTEKGAFQVVFAYLGQDTPVARRQLEQVLNAVETRLRPRALFIDTPPLSANTPVAGLVDYVVPVVTPDVSAIETTKSYLGVVGGRRLKPILNMYIPEYPVSTVHSAPWDAVVEKALGERPHLVPFDKLLQAARQALEVEVLKLRLSESPAVKAIIEYARYLAGAIET</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB05</accession>
    <name>B1YB05_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">NADH-quinone oxidoreductase, B subunit</fullName>
            <ecNumber evidence="8">1.6.5.11</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1787</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the complex I 20 kDa subunit family.</text>
    </comment>
    <dbReference type="EC" id="1.6.5.11" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351124.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB05"/>
    <dbReference type="STRING" id="444157.Tneu_1787"/>
    <dbReference type="GeneID" id="6165172"/>
    <dbReference type="KEGG" id="tne:Tneu_1787"/>
    <dbReference type="eggNOG" id="arCOG01554">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055737_7_3_2"/>
    <dbReference type="OrthoDB" id="5740at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045271">
        <property type="term" value="C:respiratory chain complex I"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009060">
        <property type="term" value="P:aerobic respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015990">
        <property type="term" value="P:electron transport coupled proton transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.12280:FF:000002">
        <property type="entry name" value="NADH-quinone oxidoreductase subunit B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006137">
        <property type="entry name" value="NADH_UbQ_OxRdtase-like_20kDa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006138">
        <property type="entry name" value="NADH_UQ_OxRdtase_20Kd_su"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01957">
        <property type="entry name" value="nuoB_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF005012">
        <property type="entry name" value="PRK06411.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11995">
        <property type="entry name" value="NADH DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11995:SF14">
        <property type="entry name" value="NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01058">
        <property type="entry name" value="Oxidored_q6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56770">
        <property type="entry name" value="HydA/Nqo6-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5" id="KW-0520">NAD</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-1278">Translocase</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="NADH:ubiquinone oxidoreductase-like 20kDa subunit" evidence="7">
        <location>
            <begin position="36"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="162"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="182" mass="20411" checksum="14410715A788E02D" modified="2008-05-20" version="1">MSQALREFLMRKAKLEKLFKWGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVILVEGTITRKMARVLKMVYEQMPEPKYVLAMGACAVRGGLFWNSYHVVQVDTVLPVDVYIAGCPPTPEAVIRAFMMLHNKIKGQPGPYIEPTKVDLTPYLPPPPKPQQKPAAQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB22</accession>
    <name>B1YB22_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1804</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351141.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB22"/>
    <dbReference type="STRING" id="444157.Tneu_1804"/>
    <dbReference type="GeneID" id="6164494"/>
    <dbReference type="KEGG" id="tne:Tneu_1804"/>
    <dbReference type="eggNOG" id="arCOG01269">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_1_0_2"/>
    <dbReference type="OrthoDB" id="43815at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06582">
        <property type="entry name" value="TM_PBP1_LivH_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052157">
        <property type="entry name" value="BCAA_transport_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11795:SF449">
        <property type="entry name" value="BRANCHED-CHAIN AMINO ACID TRANSPORT PERMEASE PROTEIN LIVH-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11795">
        <property type="entry name" value="BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE PROTEIN LIVH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="32"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="57"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="80"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="115"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="162"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="213"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="244"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="270"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="300"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00037998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="323" mass="34015" checksum="CB2E9E6EE6516DEB" modified="2008-05-20" version="1">MKRIALFWLIVAALAVGWAASAAYAPRLAVEGVMYSSILALASVGLTMTYQTTKVPNFAHGAVMGIGILAALALSQRFGLSPYLAGLAALPFAVVASVALYYTLMPIYRRGSSPIILMMASMAYNIILLGALNATADYLGRAWGVFTRSYTLRGADFSIGDVQGLAVVGSSMVAAVSIVMYLFLTKTKLGVALRAAVENEELARSLGINVDRAYLAAWAIAGALAGYSGSLLTLYLTVEPDTGWMMLAGIFAASIAGGLNSVFGAVLGAYLMGFVEVPLATYAAYAVAVEPYQLLQYRPLLPLIAVAVFLIVIPQGLTSLRKK</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-09-02" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB28</accession>
    <name>COXX_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Protoheme IX farnesyltransferase</fullName>
            <ecNumber evidence="1">2.5.1.141</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Heme B farnesyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Heme O synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ctaB</name>
        <name type="ordered locus">Tneu_1811</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>heme b + (2E,6E)-farnesyl diphosphate + H2O = Fe(II)-heme o + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:28070"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
            <dbReference type="ChEBI" id="CHEBI:60530"/>
            <dbReference type="ChEBI" id="CHEBI:175763"/>
            <dbReference type="EC" id="2.5.1.141"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Porphyrin-containing compound metabolism; heme O biosynthesis; heme O from protoheme: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="1">Carbon 2 of the heme B porphyrin ring is defined according to the Fischer nomenclature.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.141" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351147.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB28"/>
    <dbReference type="SMR" id="B1YB28"/>
    <dbReference type="STRING" id="444157.Tneu_1811"/>
    <dbReference type="GeneID" id="6164385"/>
    <dbReference type="KEGG" id="tne:Tneu_1811"/>
    <dbReference type="eggNOG" id="arCOG00479">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029631_0_1_2"/>
    <dbReference type="OrthoDB" id="131615at2157"/>
    <dbReference type="UniPathway" id="UPA00834">
        <property type="reaction ID" value="UER00712"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008495">
        <property type="term" value="F:protoheme IX farnesyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048034">
        <property type="term" value="P:heme O biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13957">
        <property type="entry name" value="PT_UbiA_Cox10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.140">
        <property type="entry name" value="UbiA prenyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00154">
        <property type="entry name" value="CyoE_CtaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006369">
        <property type="entry name" value="Protohaem_IX_farnesylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030470">
        <property type="entry name" value="UbiA_prenylTrfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044878">
        <property type="entry name" value="UbiA_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01473">
        <property type="entry name" value="cyoE_ctaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43448">
        <property type="entry name" value="PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43448:SF2">
        <property type="entry name" value="PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00943">
        <property type="entry name" value="UBIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0350">Heme biosynthesis</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0812">Transmembrane</keyword>
    <keyword id="KW-1133">Transmembrane helix</keyword>
    <feature type="chain" id="PRO_0000346097" description="Protoheme IX farnesyltransferase">
        <location>
            <begin position="1"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="204"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="228"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="257"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00154"/>
        </source>
    </evidence>
    <sequence length="278" mass="29931" checksum="312E5A415144DBBC" modified="2008-05-20" version="1">MNPYIVLLKPRVIWLLILSSVVGYVYAAGTVDWGRLAALTAAATLAVGGSAAFNHYWERDIDAAMARTARRPLPAGAIPPSNALVYSLALSATGILLGFYLLGPLPGVFVALGWFFYAVVYTVWLKRRTWLNILGGGFAGNATFLGGYALGKGTVDLPAVLISFAIYLWIPSHIWALAYKYREDYRRAGVPMLPAIIDEGKAVAIISALNIASAAYILWLYLVFGRGLPGLALVLAGVAGTVATSALALREKSDRAMWRMYKASSPILTLFLLALVFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB37</accession>
    <name>B1YB37_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1820</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351156.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB37"/>
    <dbReference type="STRING" id="444157.Tneu_1820"/>
    <dbReference type="GeneID" id="6164604"/>
    <dbReference type="KEGG" id="tne:Tneu_1820"/>
    <dbReference type="eggNOG" id="arCOG00397">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_730803_0_0_2"/>
    <dbReference type="OrthoDB" id="11638at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00840">
        <property type="entry name" value="MPP_Mre11_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050535">
        <property type="entry name" value="DNA_Repair-Maintenance_Comp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041796">
        <property type="entry name" value="Mre11_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30337">
        <property type="entry name" value="COMPONENT OF ATP-DEPENDENT DSDNA EXONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30337:SF0">
        <property type="entry name" value="NUCLEASE SBCCD SUBUNIT D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Calcineurin-like phosphoesterase" evidence="4">
        <location>
            <begin position="1"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="386" mass="43499" checksum="1385FB307DFA2702" modified="2008-05-20" version="1">MKLLHISDAHLGRAQYHLPEREEDYFRAFEEALRRGRGADAVLITGDLFDLKRPSTRALVKFVEAVEAAGAPVYLIGGNHDFSYVRYRAEAERCPRPAECLYDTALRLLDRLRLAKLLCWESVDAGGVHIFGACATPRDYAAEYRRALQRMPPGAVLAIHQAVEGVKARYPAEDDEYTMPQEVFQGLPYVHIAAGHIHDHLARHPVGAVWAGSLEVWDVGEFETWDYRGGFEKAQDRAEKGAVLIDVAGRAVSLRAIPIPPGRPLYRVRLYVRERREAYGAAEEAAKLFDKPGAVVRVEVWGTLEEALRPRQMATLFTKALYVDVVDRTAAPQRAVSLRGSAMEELWRLMREKLGQHAEVVLRAMELLREGEKEAAYKLILKALYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB43</accession>
    <name>B1YB43_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Thioredoxin-like fold domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1826</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB43"/>
    <dbReference type="STRING" id="444157.Tneu_1826"/>
    <dbReference type="KEGG" id="tne:Tneu_1826"/>
    <dbReference type="eggNOG" id="arCOG02870">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_671972_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd02972">
        <property type="entry name" value="DsbA_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="423" mass="45069" checksum="FA45059D9C7A0F37" modified="2008-05-20" version="1">MFLNIPQGPAMNKNVIVGIVIAAVVVAIAAVALYKNPPKSAPAPPGGTPPAGTLYIYRVRVESGHAIEMTAYYAPLANGLFYGQVANQTRTYFLVKDGMINVLAQSGDNSQRATYYNKLLEICVNSTTAATVAGEKITIGSSRCTPSPNPLPAVKTFDDLLMLIQGLPGPVNGTGWVKSGVAQTPFGQATVYTNKTEVPIVVGLTAVLSYEKQVLPDGSLYSFKVQLAYGTQVAATLTYTLVNKSQITPEVRTIIEDLSVPVAAAGGGGLDILKVAEKIGMSYNGTWPAAVVFFDLECPYCARLFVHNYTLFQGHKLVLVDLVVHPEALPAHERLRCLYKNSPAEVIPTLRQLYARFLAGDSNYTSVLPQDRCPIDANAGMQLATLLAGQNVGTPMVVVVYPNGTFTTIVGYDPKAIAAALKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBC0</accession>
    <name>B1YBC0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0300</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349672.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBC0"/>
    <dbReference type="STRING" id="444157.Tneu_0300"/>
    <dbReference type="GeneID" id="6166038"/>
    <dbReference type="KEGG" id="tne:Tneu_0300"/>
    <dbReference type="eggNOG" id="arCOG00648">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076014_2_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030788">
        <property type="term" value="F:precorrin-2 C20-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="entry name" value="Cobalt-precorrin-4 Transmethylase, Domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="entry name" value="Methyltransferase, Cobalt-precorrin-4 Transmethylase, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012382">
        <property type="entry name" value="CobI/CbiL"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004062">
        <property type="entry name" value="PRK05576.1-5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43467">
        <property type="entry name" value="COBALT-PRECORRIN-2 C(20)-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43467:SF2">
        <property type="entry name" value="COBALT-PRECORRIN-2 C(20)-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036427">
        <property type="entry name" value="Precrrn-2_mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="Tetrapyrrole methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="3 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Tetrapyrrole methylase" evidence="7">
        <location>
            <begin position="5"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR036427"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="207" mass="22319" checksum="F0520EE0D3E92771" modified="2008-05-20" version="1">MAVKVVGLGPGDPKLLTLAAAEALREAEVVYVPASAATERSLAEALVRRFTEAEVRVVEMEMGRADPVRLARSARELGDGAVYALLGDPTLYGSFAKLKPYLEAPYVYIPGVTSVTACAARAGVELASGDQAVAVVPASRSDLLEKAAELFDVVVVVKANRNVDLVNELAAGRRALAARRCYMEGEQISERVSWLDYFTTVYIWRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="42" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBC3</accession>
    <name>B1YBC3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0303</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBC3"/>
    <dbReference type="KEGG" id="tne:Tneu_0303"/>
    <dbReference type="HOGENOM" id="CLU_2581561_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="80" mass="8249" checksum="381DAD359F06F85C" modified="2008-05-20" version="1">MRGASAEGSAGCLLGAAGSANGRPTRRRRRSAGALADLLSTNADDRLDGATWVSPVALLRLMDNAAPGLYPRRGSRLDAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBG6</accession>
    <name>B1YBG6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1853</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351187.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBG6"/>
    <dbReference type="STRING" id="444157.Tneu_1853"/>
    <dbReference type="GeneID" id="6164798"/>
    <dbReference type="KEGG" id="tne:Tneu_1853"/>
    <dbReference type="eggNOG" id="arCOG02073">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_193461_0_0_2"/>
    <dbReference type="OrthoDB" id="25733at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="71" mass="7768" checksum="9C18F7EC3449D464" modified="2008-05-20" version="1">MDTVEVPGCPEGSLKAVAYIKEKQPAEVAIKTPDEGCVNVLRLILPLFGYIVVDVYREGDLHVVKAKRAKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBJ5</accession>
    <name>B1YBJ5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">5-formyltetrahydrofolate cyclo-ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1882</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351216.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBJ5"/>
    <dbReference type="STRING" id="444157.Tneu_1882"/>
    <dbReference type="GeneID" id="6164721"/>
    <dbReference type="KEGG" id="tne:Tneu_1882"/>
    <dbReference type="eggNOG" id="arCOG00474">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031500_2_0_2"/>
    <dbReference type="OrthoDB" id="18307at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10420:FF:000001">
        <property type="entry name" value="Methenyltetrahydrofolate synthase domain-containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10420">
        <property type="entry name" value="NagB/RpiA/CoA transferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002698">
        <property type="entry name" value="FTHF_cligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024185">
        <property type="entry name" value="FTHF_cligase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13017">
        <property type="entry name" value="5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13017:SF0">
        <property type="entry name" value="METHENYLTETRAHYDROFOLATE SYNTHASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01812">
        <property type="entry name" value="5-FTHF_cyc-lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="NagB/RpiA/CoA transferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="243" mass="27259" checksum="D04C425DC9553A00" modified="2008-05-20" version="1">MAKEVKRSIRERIWRLMEERDIASFPRPVYGRIPNFKGAERACQNLTRLGQFADAAVVKINPDAPQRPCREAALAAGKTVVMPTPRIREGFLLLDPRSIPREAYREASTIAGAFKWGRPVKPWHLPGVDLVVVGSVAVNPRTGRRVGKSHGYAEIEWGILTAFGKAGEGTPVATTVHDVQLVEDDIPREPFDLPVDVVATPTKTIFVRRADPKPSGIYWEYVTEDMLREIPLLSEIRRKNVFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBK7</accession>
    <name>B1YBK7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Undecaprenyl-diphosphatase</fullName>
            <ecNumber evidence="3">3.6.1.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Undecaprenyl pyrophosphate phosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Tneu_1894</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>di-trans,octa-cis-undecaprenyl diphosphate + H2O = di-trans,octa-cis-undecaprenyl phosphate + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28094"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60392"/>
            <dbReference type="EC" id="3.6.1.27"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UppP family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.27" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351228.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBK7"/>
    <dbReference type="STRING" id="444157.Tneu_1894"/>
    <dbReference type="GeneID" id="6164925"/>
    <dbReference type="KEGG" id="tne:Tneu_1894"/>
    <dbReference type="eggNOG" id="arCOG04761">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060296_1_2_2"/>
    <dbReference type="OrthoDB" id="65864at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050380">
        <property type="term" value="F:undecaprenyl-diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003824">
        <property type="entry name" value="UppP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30622">
        <property type="entry name" value="UNDECAPRENYL-DIPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30622:SF2">
        <property type="entry name" value="UNDECAPRENYL-DIPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02673">
        <property type="entry name" value="BacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="40"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="81"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="107"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="186"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="219"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="246"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00032707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00047594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB40809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="267" mass="27490" checksum="1AB0039C73D30227" modified="2008-05-20" version="1">MDLLAALVLGVIQGVAEWLPISSKTQIMFASQVLLGAGPELAYSLGLFLEAASVLAALIYFRGVYLEILRGLLGDAEGRRWLKYVVVTTAVTGAVGIPLYLAAKRYLLLGASAGWLMIALGLAVILNAAILQRARAAAGLKTFGEMPLSHMALVGLAQALSVLPGVSRSGITTTTLLLLGYRPDEAFKSSFVLVPIAGLGATALAYLSEGNAVATPEAATAMAVGLVVSLATIRALLQFAKSRHVALVNIAVGALAIAGGLAKILTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBQ7</accession>
    <name>B1YBQ7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0341</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349712.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBQ7"/>
    <dbReference type="STRING" id="444157.Tneu_0341"/>
    <dbReference type="GeneID" id="6165233"/>
    <dbReference type="KEGG" id="tne:Tneu_0341"/>
    <dbReference type="eggNOG" id="arCOG00333">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023081_6_0_2"/>
    <dbReference type="OrthoDB" id="42878at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="entry name" value="Alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004017">
        <property type="entry name" value="Cys_rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43551">
        <property type="entry name" value="FUMARATE REDUCTASE IRON-SULFUR SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43551:SF1">
        <property type="entry name" value="HETERODISULFIDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02754">
        <property type="entry name" value="CCG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46548">
        <property type="entry name" value="alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="55"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="471" mass="53560" checksum="6A2D63594CD4ACAA" modified="2008-05-20" version="1">MHAAEFKLGDTSAIKPLKAPESLVKKLHERIGLKIPEDKHTYFLSRLREEYRKNRNIKIAVDTCVHCGACIDACPTYLTTKDVKNSPVGRAELIRRVLKKGSVTDADLEEIYTYYWQCLTCRRCGYVCPFGIDQADITRFVRGVLYEIGMVNRFAAMTIDAHETSGNAMRITPAAAVNILNYFAEEIKAEKGVEVTYYVYRHDQKKMIKFVGKNAVGEIPRDSPEWPEAILFPSSADLFLNTETLKGYLTFLNAVKIRFAVHTGCTEVANFGLWTHEKHMEYIGNIYYNAAKELGAKYAIFGECGHGWRAFKNVVAPRLEKDGIKVYHIHHLVVKAIKEGKIKLDPEANGDKVYMYQDPCQYSRGGDLYEEPRFIISRVVKRWVECPQNRQLNWCCGGQAGMLADEMKPLRLQYGRLWYECVINAGAQHVVRPCSMCKGTLNGIIGDLNKMYGRNITYGGLMDLVYRALVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBR6</accession>
    <name>B1YBR6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0350</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349720.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBR6"/>
    <dbReference type="STRING" id="444157.Tneu_0350"/>
    <dbReference type="GeneID" id="6166205"/>
    <dbReference type="KEGG" id="tne:Tneu_0350"/>
    <dbReference type="eggNOG" id="arCOG05638">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1792206_0_0_2"/>
    <dbReference type="OrthoDB" id="24558at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="150" mass="16922" checksum="B8DEB04ADDEC592E" modified="2008-05-20" version="1">MVREYSRLALRKDLAEEFYRAVKNLGRKPSEVLEFIIQAAVDSINHGVDPIDMVHICRLARSLGLGRGGYEVGKEAGVLLRAYYSPEEFLEILTRVGPKVFHANRVGPNAFRVNNATIRETLRGILEGIGYKVRVEGDMVFLDNVPEYTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBS8</accession>
    <name>B1YBS8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Phosphate-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0362</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the PstS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349732.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBS8"/>
    <dbReference type="STRING" id="444157.Tneu_0362"/>
    <dbReference type="GeneID" id="6164913"/>
    <dbReference type="KEGG" id="tne:Tneu_0362"/>
    <dbReference type="eggNOG" id="arCOG00213">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034528_1_2_2"/>
    <dbReference type="OrthoDB" id="10255at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042301">
        <property type="term" value="F:phosphate ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035435">
        <property type="term" value="P:phosphate ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13565">
        <property type="entry name" value="PBP2_PstS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005673">
        <property type="entry name" value="ABC_phos-bd_PstS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050962">
        <property type="entry name" value="Phosphate-bind_PstS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00975">
        <property type="entry name" value="3a0107s03"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42996">
        <property type="entry name" value="PHOSPHATE-BINDING PROTEIN PSTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42996:SF1">
        <property type="entry name" value="PHOSPHATE-BINDING PROTEIN PSTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12849">
        <property type="entry name" value="PBP_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002756">
        <property type="entry name" value="PstS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 4" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="5"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="domain" description="PBP" evidence="7">
        <location>
            <begin position="79"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="30"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="5">
        <location>
            <begin position="30"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR002756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF12849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="426" mass="45922" checksum="61222771F7E1D2A7" modified="2008-05-20" version="1">MERKILYIGAVLALAIVAAVVGLYLGQQTTQPATPTPAQQTQTTPQPAQTTPATTQTPQSSPPQTSTQQPQASPPGCGGVSGEIVAGGATFPGPQYDAWIKQFSEITGGRVKITYNYLGSGAGQAGLIKGELAFAGSDLPLAPARYQEQRGKILQFPVVMGGILVVYNVPEVAYEKTGKRLNLTAEIIGDIYMGKIRYWDDPKIKAVNPALADRLPHQPITPVHRSDASGTTGWFTLFLTKAYPQWNQTVGWGLSVNWPVDQMGVARAGQGNPGVAQLVLNTPYSIGYVEYNYWVTQRQKFDAVGGYALVQNGNDGKFYDPTPETIAEAASEGLRQVAAKMGGFPSASDNWWQVVQLFAYPPRGYPIVGLSFAMIRTDYSGYPDPNTAAVVKCFFRYVLTEGQKRLVEGYLPLPPELAQVGLKAVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBT6</accession>
    <name>B1YBT6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleoside recognition domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0370</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349740.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBT6"/>
    <dbReference type="STRING" id="444157.Tneu_0370"/>
    <dbReference type="GeneID" id="6164952"/>
    <dbReference type="KEGG" id="tne:Tneu_0370"/>
    <dbReference type="eggNOG" id="arCOG00360">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048086_2_1_2"/>
    <dbReference type="OrthoDB" id="46142at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038880">
        <property type="entry name" value="MJ0871-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38139">
        <property type="entry name" value="GATE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38139:SF1">
        <property type="entry name" value="NUCLEOSIDE TRANSPORTER_FEOB GTPASE GATE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="114"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="173"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="216"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="248"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="298" mass="31004" checksum="BEBC5E545079CB7E" modified="2008-05-20" version="1">MINPAALLREVLFLAPSVIGGSLLAAFLMERGVLNKLRPLAAPFVKLSGLGPEAAAAFITAFFDVRSANALLVTLHREGRLSRREMYLASLMNAFPAAVRHWDSMLPPLLALLGLWGALYFACFLLVGLAQTLLFALLSRLLVAGSGRVSAVVVGGGGGLNALKRALRRAVKILATSAAALAVVELAASLGLFGVLNSYVKSAMSAFPLSAEELGVAVASMVNYAAGAAAAAALINAGLLDGWRAVKAMLLGSAFSFVTALRAILPYYVGVFGPRDGPLLMAISTSVRTALILALVWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBU2</accession>
    <name>B1YBU2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Periplasmic binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0377</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349746.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBU2"/>
    <dbReference type="STRING" id="444157.Tneu_0377"/>
    <dbReference type="GeneID" id="6165342"/>
    <dbReference type="KEGG" id="tne:Tneu_0377"/>
    <dbReference type="eggNOG" id="arCOG04233">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_403165_0_0_2"/>
    <dbReference type="OrthoDB" id="24039at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1980">
        <property type="entry name" value="Nitrogenase molybdenum iron protein domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050902">
        <property type="entry name" value="ABC_Transporter_SBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30535:SF34">
        <property type="entry name" value="MOLYBDATE-BINDING PROTEIN MOLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30535">
        <property type="entry name" value="VITAMIN B12-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53807">
        <property type="entry name" value="Helical backbone' metal receptor"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="1">
        <location>
            <begin position="80"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="1">
        <location>
            <begin position="400"/>
            <end position="659"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="682" mass="75423" checksum="9C3F1D9DBDEFBE6B" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBV6</accession>
    <name>B1YBV6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">PDGLE domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0392</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349760.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBV6"/>
    <dbReference type="STRING" id="444157.Tneu_0392"/>
    <dbReference type="GeneID" id="6164874"/>
    <dbReference type="KEGG" id="tne:Tneu_0392"/>
    <dbReference type="eggNOG" id="arCOG03159">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_179751_0_0_2"/>
    <dbReference type="OrthoDB" id="15358at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025937">
        <property type="entry name" value="PDGLE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13190">
        <property type="entry name" value="PDGLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="PDGLE" evidence="7">
        <location>
            <begin position="2"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="103" mass="11702" checksum="B8EB1C5CC20DC13F" modified="2008-05-20" version="1">MKKLYIFLALMALVSPVFGVWLANLIGYHEPLDVAADMINEVANETLHKVILQDVSDQMNWTPLKDYTVPGLPDWLGYIISAYIGLAIFIALWLVARRVKKTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBW4</accession>
    <name>B1YBW4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Beta-lactamase fold-like Zn-dependent hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0400</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349768.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBW4"/>
    <dbReference type="STRING" id="444157.Tneu_0400"/>
    <dbReference type="GeneID" id="6164863"/>
    <dbReference type="KEGG" id="tne:Tneu_0400"/>
    <dbReference type="eggNOG" id="arCOG00530">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070010_0_1_2"/>
    <dbReference type="OrthoDB" id="28313at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050114">
        <property type="entry name" value="UPF0173_UPF0282_UlaG_hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43546:SF8">
        <property type="entry name" value="METALLO-BETA-LACTAMASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43546">
        <property type="entry name" value="UPF0173 METAL-DEPENDENT HYDROLASE MJ1163-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13483">
        <property type="entry name" value="Lactamase_B_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="190" mass="20207" checksum="593AE8CEA2174A38" modified="2008-05-20" version="1">MLRLLFRGVAVVRRDYAGVEISAGGDSLCIDVLKPACRHVLYTHLHPRHYGGAGGLAPPAVKPGDRLELGPFAVSVVEAYNVTKLVGGAPAHPKGTGVGYLVEADGVSLYHPGDTDLIGEMAKIRADVFLAPIGGDGTMTAEEAAEAVKLIRPKIAVPIHFEGARPYIKFRDISQPYTQVVHLETSPSSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBX1</accession>
    <name>B1YBX1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Nickel-dependent hydrogenase large subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_0407</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Heterodimer of a large and a small subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell envelope</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349775.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBX1"/>
    <dbReference type="STRING" id="444157.Tneu_0407"/>
    <dbReference type="GeneID" id="6166157"/>
    <dbReference type="KEGG" id="tne:Tneu_0407"/>
    <dbReference type="eggNOG" id="arCOG01550">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030087_0_0_2"/>
    <dbReference type="OrthoDB" id="42371at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008901">
        <property type="term" value="F:ferredoxin hydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.645.10">
        <property type="entry name" value="Cytochrome-c3 Hydrogenase, chain B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001501">
        <property type="entry name" value="Ni-dep_hyd_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018194">
        <property type="entry name" value="Ni-dep_hyd_lsu_Ni_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029014">
        <property type="entry name" value="NiFe-Hase_large"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050867">
        <property type="entry name" value="NiFe/NiFeSe_hydrgnase_LSU"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42958">
        <property type="entry name" value="HYDROGENASE-2 LARGE CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42958:SF2">
        <property type="entry name" value="UPTAKE HYDROGENASE LARGE SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00374">
        <property type="entry name" value="NiFeSe_Hases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56762">
        <property type="entry name" value="HydB/Nqo4-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00507">
        <property type="entry name" value="NI_HGENASE_L_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00508">
        <property type="entry name" value="NI_HGENASE_L_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0408">Iron</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8 9" id="KW-0533">Nickel</keyword>
    <keyword evidence="7 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="8">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="608"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="611"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="614"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR601501-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="638" mass="71564" checksum="3221D66EF2F31584" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBY7</accession>
    <name>B1YBY7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">succinate dehydrogenase</fullName>
            <ecNumber evidence="4">1.3.5.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Tneu_0423</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.3.5.1" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349791.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBY7"/>
    <dbReference type="STRING" id="444157.Tneu_0423"/>
    <dbReference type="GeneID" id="6166223"/>
    <dbReference type="KEGG" id="tne:Tneu_0423"/>
    <dbReference type="eggNOG" id="arCOG00571">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014312_6_2_2"/>
    <dbReference type="OrthoDB" id="23539at2157"/>
    <dbReference type="BRENDA" id="1.3.5.1">
        <property type="organism ID" value="6328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008177">
        <property type="term" value="F:succinate dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.700.10:FF:000003">
        <property type="entry name" value="Fumarate reductase flavoprotein subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.100">
        <property type="entry name" value="Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="entry name" value="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-dep_OxRdtase_2_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003952">
        <property type="entry name" value="FRD_SDH_FAD_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037099">
        <property type="entry name" value="Fum_R/Succ_DH_flav-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015939">
        <property type="entry name" value="Fum_Rdtase/Succ_DH_flav-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030664">
        <property type="entry name" value="SdhA/FrdA/AprA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014006">
        <property type="entry name" value="Succ_Dhase_FrdA_Gneg"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004724">
        <property type="entry name" value="PRK06069.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01812">
        <property type="entry name" value="sdhA_frdA_Gneg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11632">
        <property type="entry name" value="SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11632:SF51">
        <property type="entry name" value="SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02910">
        <property type="entry name" value="Succ_DH_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000171">
        <property type="entry name" value="SDHA_APRA_LASPO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00411">
        <property type="entry name" value="PNDRDTASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46977">
        <property type="entry name" value="Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56425">
        <property type="entry name" value="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00504">
        <property type="entry name" value="FRD_SDH_FAD_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0249">Electron transport</keyword>
    <keyword evidence="7" id="KW-0274">FAD</keyword>
    <keyword evidence="6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="domain" description="FAD-dependent oxidoreductase 2 FAD-binding" evidence="12">
        <location>
            <begin position="7"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="domain" description="Fumarate reductase/succinate dehydrogenase flavoprotein-like C-terminal" evidence="13">
        <location>
            <begin position="451"/>
            <end position="575"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="11">
        <location>
            <position position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000171-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB39371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="575" mass="63175" checksum="D00D999539EFDE73" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBZ3</accession>
    <name>B1YBZ3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA (cytosine-5-)-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0429</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="5">Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.37" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349797.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBZ3"/>
    <dbReference type="STRING" id="444157.Tneu_0429"/>
    <dbReference type="REBASE" id="17645">
        <property type="entry name" value="M.TneI"/>
    </dbReference>
    <dbReference type="GeneID" id="6166162"/>
    <dbReference type="KEGG" id="tne:Tneu_0429"/>
    <dbReference type="eggNOG" id="arCOG04157">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006958_2_0_2"/>
    <dbReference type="OrthoDB" id="5033at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003886">
        <property type="term" value="F:DNA (cytosine-5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044027">
        <property type="term" value="P:negative regulation of gene expression via chromosomal CpG island methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.120.10">
        <property type="entry name" value="DNA Methylase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050390">
        <property type="entry name" value="C5-Methyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018117">
        <property type="entry name" value="C5_DNA_meth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001525">
        <property type="entry name" value="C5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00675">
        <property type="entry name" value="dcm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10629">
        <property type="entry name" value="CYTOSINE-SPECIFIC METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10629:SF52">
        <property type="entry name" value="DNA (CYTOSINE-5)-METHYLTRANSFERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00145">
        <property type="entry name" value="DNA_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00105">
        <property type="entry name" value="C5METTRFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00094">
        <property type="entry name" value="C5_MTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51679">
        <property type="entry name" value="SAM_MT_C5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="462" mass="52104" checksum="70297BBA52DA2DCA" modified="2008-05-20" version="1">MKTYTVVSLFSGAGGLDLGFVQSGRYRMLFANDVLSSALTTYAKNLDLKLELCSSRRTEARPGVALVCDVAEVDFAPLGDVDVIVGGPPCQDFSIVRGPSWDRRGIEVRRGRLYAHFVRALATLRPKAFVFENVPGLISTNGGLAYKVILDDFSNLKLRWEEVRKVAGADGTGVKPEGYEIVFADVVDFAKLGVPQRRERLIIAGLRRDIVKNRDVWDIRAKFSRAVHGGGLLFFKYPLTAIEAFEGSTLENLGDVYREVMREWEGVWKEVGTPRAYEWKEREWDRLTFDIVKDYLTVSGIRDASDFDEAMEQHKRVLTELGYYGVPVSSLKLQDGTTEEPSEDPRVIERMRMIPPGENHEFVRGTKWEVEGRGISLVYRRLHPLKPSYTIVAYGGGGTHGYHYRRNRATLTLRERARLQTFPDTFLFYGKRSEIRAQIGEAVPPLAGKKIAQALAEVLDML</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC09</accession>
    <name>B1YC09_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Type-4 uracil-DNA glycosylase</fullName>
            <ecNumber evidence="3">3.2.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Tneu_1948</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolyzes single-stranded DNA or mismatched double-stranded DNA and polynucleotides, releasing free uracil.</text>
            <dbReference type="EC" id="3.2.2.27"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the uracil-DNA glycosylase (UDG) superfamily. Type 4 (UDGa) family.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.27" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351282.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC09"/>
    <dbReference type="STRING" id="444157.Tneu_1948"/>
    <dbReference type="GeneID" id="6164599"/>
    <dbReference type="KEGG" id="tne:Tneu_1948"/>
    <dbReference type="eggNOG" id="arCOG00905">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044815_1_3_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004844">
        <property type="term" value="F:uracil DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd10030">
        <property type="entry name" value="UDG-F4_TTUDGA_SPO1dp_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.470.10">
        <property type="entry name" value="Uracil-DNA glycosylase-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051536">
        <property type="entry name" value="UDG_Type-4/5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005273">
        <property type="entry name" value="Ura-DNA_glyco_family4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005122">
        <property type="entry name" value="Uracil-DNA_glycosylase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036895">
        <property type="entry name" value="Uracil-DNA_glycosylase-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00758">
        <property type="entry name" value="UDG_fam4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33693:SF1">
        <property type="entry name" value="TYPE-4 URACIL-DNA GLYCOSYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33693">
        <property type="entry name" value="TYPE-5 URACIL-DNA GLYCOSYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03167">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00986">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00987">
        <property type="entry name" value="UreE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52141">
        <property type="entry name" value="Uracil-DNA glycosylase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="11" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Uracil-DNA glycosylase-like" evidence="12">
        <location>
            <begin position="25"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB40863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="190" mass="20652" checksum="F98EB963F12F08ED" modified="2008-05-20" version="1">MEALHDAIRRCTKCPLHLHRRNAVPGEGRARLGVMVVGEAPGAAEDAEGRPFVGAAGSLLTKTLAKLGVSRDDLYITNVVKCRPPNNRTPTREEVEACLPYLLKQIELVKPRRVLALGLVSAKALLGLIGREVEKVGEVRGRCFPGRISGVELEVCVTYHPAAVLRNPNLRGRFEGDLALFLGGGLERYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC33</accession>
    <name>B1YC33_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Small ribosomal subunit protein uS9</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rps9</name>
        <name evidence="7" type="ordered locus">Tneu_1972</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the universal ribosomal protein uS9 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351306.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC33"/>
    <dbReference type="STRING" id="444157.Tneu_1972"/>
    <dbReference type="GeneID" id="6166052"/>
    <dbReference type="KEGG" id="tne:Tneu_1972"/>
    <dbReference type="eggNOG" id="arCOG04243">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046483_4_0_2"/>
    <dbReference type="OrthoDB" id="52677at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000462">
        <property type="term" value="P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.230.10:FF:000051">
        <property type="entry name" value="30S ribosomal protein S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00532_A">
        <property type="entry name" value="Ribosomal_uS9_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000754">
        <property type="entry name" value="Ribosomal_uS9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019958">
        <property type="entry name" value="Ribosomal_uS9_archaeal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020574">
        <property type="entry name" value="Ribosomal_uS9_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribsml_uS5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001749">
        <property type="entry name" value="PRK00474.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03627">
        <property type="entry name" value="uS9_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21569:SF16">
        <property type="entry name" value="RIBOSOMAL PROTEIN S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21569">
        <property type="entry name" value="RIBOSOMAL PROTEIN S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00380">
        <property type="entry name" value="Ribosomal_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00360">
        <property type="entry name" value="RIBOSOMAL_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="120"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="120"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="132"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="146" mass="16297" checksum="A9F78FC197D7F260" modified="2008-05-20" version="1">MDVKTPWAKVLQETPRVVIAVGKKKTAVARAVIKPGVGRVRINGYPLELWPIEMARLKMSEPLILAGDLARKVDIDVNVAGGGYMGQATAVRIAIARGLVAFFQSQELKEVYEKYDPYMLKGDPRRAEPKKPGIKHARSKRQKAYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC37</accession>
    <name>B1YC37_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Nuclease RuvC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1976</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351310.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC37"/>
    <dbReference type="STRING" id="444157.Tneu_1976"/>
    <dbReference type="GeneID" id="6165659"/>
    <dbReference type="KEGG" id="tne:Tneu_1976"/>
    <dbReference type="eggNOG" id="arCOG04219">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027052_1_0_2"/>
    <dbReference type="OrthoDB" id="15228at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007408">
        <property type="entry name" value="DUF460"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40707:SF1">
        <property type="entry name" value="DUF460 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40707">
        <property type="entry name" value="POSSIBLE NUCLEASE OF RNASE H FOLD, RUVC/YQGF FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04312">
        <property type="entry name" value="DUF460"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="418"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="584" mass="66454" checksum="0C2AC57147D2CFF5" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-06-16" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC39</accession>
    <name>Y1978_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0179 protein Tneu_1978</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_1978</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0179 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351312.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC39"/>
    <dbReference type="STRING" id="444157.Tneu_1978"/>
    <dbReference type="GeneID" id="6165589"/>
    <dbReference type="KEGG" id="tne:Tneu_1978"/>
    <dbReference type="eggNOG" id="arCOG04477">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121764_0_0_2"/>
    <dbReference type="OrthoDB" id="24613at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00498">
        <property type="entry name" value="UPF0179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005369">
        <property type="entry name" value="UPF0179"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40699">
        <property type="entry name" value="UPF0179 PROTEIN MJ1627"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40699:SF1">
        <property type="entry name" value="UPF0179 PROTEIN MJ1627"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03684">
        <property type="entry name" value="UPF0179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000378139" description="UPF0179 protein Tneu_1978">
        <location>
            <begin position="1"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="140"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="157"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="166" mass="18042" checksum="8794D289A5114C53" modified="2008-05-20" version="1">MRRVVTLVSKEQAEVGHRFRVVEVPDECRTCRLYPVCMGRLTPGRAYKIVEVRPYMGQRCKITDGEMVPVVVEEAPMIGLVPLNKALEGVVVTFEGECAGCEGCPQQVQVGEKIKIVRVLGRAKCRGGDFAIVEFYALGPPSPSKSGGATASRDPSRAPPSRPLSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="99" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC44</accession>
    <name>B1YC44_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">AAA family ATPase, CDC48 subfamily</fullName>
            <ecNumber evidence="8">3.6.4.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1983</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AAA ATPase family. CDC48 subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.3" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351317.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC44"/>
    <dbReference type="STRING" id="444157.Tneu_1983"/>
    <dbReference type="GeneID" id="6165618"/>
    <dbReference type="KEGG" id="tne:Tneu_1983"/>
    <dbReference type="eggNOG" id="arCOG01308">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000688_12_2_2"/>
    <dbReference type="OrthoDB" id="77269at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd19511">
        <property type="entry name" value="RecA-like_CDC48_r2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.40.20:FF:000007">
        <property type="entry name" value="AAA family ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.60:FF:000057">
        <property type="entry name" value="AAA family ATPase, CDC48 subfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.330.10:FF:000008">
        <property type="entry name" value="AAA family ATPase, CDC48 subfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000018">
        <property type="entry name" value="Cell division control 48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.60:FF:000038">
        <property type="entry name" value="spermatogenesis-associated protein 5-like protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000012">
        <property type="entry name" value="Transitional endoplasmic reticulum ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005938">
        <property type="entry name" value="AAA_ATPase_CDC48"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050168">
        <property type="entry name" value="AAA_ATPase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004201">
        <property type="entry name" value="Cdc48_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029067">
        <property type="entry name" value="CDC48_domain_2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003338">
        <property type="entry name" value="CDC4_N-term_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01243">
        <property type="entry name" value="CDC48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23077">
        <property type="entry name" value="AAA-FAMILY ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23077:SF171">
        <property type="entry name" value="NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02933">
        <property type="entry name" value="CDC48_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02359">
        <property type="entry name" value="CDC48_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01072">
        <property type="entry name" value="CDC48_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01073">
        <property type="entry name" value="CDC48_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="ADC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54585">
        <property type="entry name" value="Cdc48 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="CDC48 N-terminal subdomain" evidence="7">
        <location>
            <begin position="6"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="CDC48" evidence="6">
        <location>
            <begin position="106"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="AAA+ ATPase" evidence="5">
        <location>
            <begin position="212"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="domain" description="AAA+ ATPase" evidence="5">
        <location>
            <begin position="487"/>
            <end position="624"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="731" mass="81813" checksum="AC661546558FA4B5" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC59</accession>
    <name>B1YC59_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1999</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351332.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC59"/>
    <dbReference type="STRING" id="444157.Tneu_1999"/>
    <dbReference type="GeneID" id="6166017"/>
    <dbReference type="KEGG" id="tne:Tneu_1999"/>
    <dbReference type="eggNOG" id="arCOG01984">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_163428_0_0_2"/>
    <dbReference type="OrthoDB" id="7950at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012206">
        <property type="entry name" value="Fd_FixX"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43082">
        <property type="entry name" value="FERREDOXIN-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43082:SF3">
        <property type="entry name" value="FERREDOXIN-LIKE PROTEIN YDIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13247">
        <property type="entry name" value="Fer4_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036548">
        <property type="entry name" value="Fdx_FixX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="56"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="96" mass="11166" checksum="1F533600A239F23F" modified="2008-05-20" version="1">MTMKYLTVEERLNANVWDVDVYRPHIKIRDPALCKRCEKKPCTYMCPAKCYVQQGDGVVLSTEACVECGTCRVVCPYDNIDWDYPRSGMGIWYRES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC90</accession>
    <name>B1YC90_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Glutamine synthetase catalytic region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0456</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the glutamine synthetase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349823.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC90"/>
    <dbReference type="STRING" id="444157.Tneu_0456"/>
    <dbReference type="GeneID" id="6165998"/>
    <dbReference type="KEGG" id="tne:Tneu_0456"/>
    <dbReference type="eggNOG" id="arCOG01909">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017290_1_3_2"/>
    <dbReference type="OrthoDB" id="36124at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamine synthetase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006542">
        <property type="term" value="P:glutamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.70">
        <property type="entry name" value="Glutamine synthetase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.590.10">
        <property type="entry name" value="Glutamine synthetase/guanido kinase, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008147">
        <property type="entry name" value="Gln_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036651">
        <property type="entry name" value="Gln_synt_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027303">
        <property type="entry name" value="Gln_synth_gly_rich_site"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43785">
        <property type="entry name" value="GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43785:SF12">
        <property type="entry name" value="TYPE-1 GLUTAMINE SYNTHETASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03951">
        <property type="entry name" value="Gln-synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54368">
        <property type="entry name" value="Glutamine synthetase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="Glutamine synthetase/guanido kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00181">
        <property type="entry name" value="GLNA_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51987">
        <property type="entry name" value="GS_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GS catalytic" evidence="8">
        <location>
            <begin position="104"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="431" mass="48077" checksum="EB0736E73917A3E2" modified="2008-05-20" version="1">MQVEGIDVWRVLKGAGVKYVYFVIVDIYGRPRVDIMPIDMAKDAFIDGVPYDGSSIPAYSTVNRSDFVAVVDPSAVYVESWNGGKAAYVFTNTLDGNAPSPLDPRNVLKQVLERAEKRGYQFKIGVEVEYFVVRGNPPELPEKAGYFDVPPDATRKVVEEIMENFAAAGLGETKTHHEVAPSQFEVNIPYGNPLKTADSILMFKTMARAVAAKHGYTVTFMPKPFWGMNGSGAHTHISVWKDGKNLMASVKEPTQELKWVVGGILNNAISISAIVAPTVNSYKRLVPHHEAPTRVVWGLGNRSAMVRVPYYGGKINRIEYRHPDPSMNPYLAFAAVVLAGLEGLENRIEPPPPVQEVAYDLQGVRETPPNLGAALKYMEEGKIARELPSDFVKAYLGVKQAEWQSYAQQYQWEKTWNTITPWEYEQYLTTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCC3</accession>
    <name>B1YCC3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NAD-dependent epimerase/dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0489</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349856.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCC3"/>
    <dbReference type="STRING" id="444157.Tneu_0489"/>
    <dbReference type="GeneID" id="6164803"/>
    <dbReference type="KEGG" id="tne:Tneu_0489"/>
    <dbReference type="eggNOG" id="arCOG01369">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007383_1_7_2"/>
    <dbReference type="OrthoDB" id="4907at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd05234">
        <property type="entry name" value="UDP_G4E_2_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.25.10">
        <property type="entry name" value="UDP-galactose 4-epimerase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43725:SF53">
        <property type="entry name" value="UDP-ARABINOSE 4-EPIMERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43725">
        <property type="entry name" value="UDP-GLUCOSE 4-EPIMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD-dependent epimerase/dehydratase" evidence="2">
        <location>
            <begin position="3"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="311" mass="34474" checksum="5650F59C0C613857" modified="2008-05-20" version="1">MRVLVTGGAGFIGSHLVDRLVEEGYEVVVVDNLSSGRWENVNPRAEFIRRDLKEPGWGVGLRADAVFHFAANPEVRVSTTEPRVHFEENVVATFNVLEWARVSGVRMVVFASSSTVYGDARVMPTPEDYPLEPVSVYGTAKAAGEVMCATYARLYGVRCLALRYANVVGPRLRHGALYDFLMKLRKKPEELEVLGDGTQKKSYLHVEEAVEATLRAWRKFEEVGEPYLALNVGNFDVASVLDIARAVAEAMGLSPQIKLRPATPDGRGWPGDVKYMLLSIKKIVELTGWRPRLNSLETVRRAAAELVSELG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCF9</accession>
    <name>B1YCF9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Diphthamide synthase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0529</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349892.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCF9"/>
    <dbReference type="STRING" id="444157.Tneu_0529"/>
    <dbReference type="GeneID" id="6165840"/>
    <dbReference type="KEGG" id="tne:Tneu_0529"/>
    <dbReference type="eggNOG" id="arCOG00036">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010289_1_0_2"/>
    <dbReference type="OrthoDB" id="372052at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1490.10">
        <property type="entry name" value="putative n-type atp pyrophosphatase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002761">
        <property type="entry name" value="Diphthami_syn_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01902">
        <property type="entry name" value="Diphthami_syn_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Diphthamide synthase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="201" mass="22459" checksum="20B2C786B9C6058C" modified="2008-05-20" version="1">MKVAFFSGGKDSVYAALLEWPVDMFFISVYSFPRPSPHLVNLHKTVELAVKLGVPTLVVNLPKGAERRTKADLLRRLGARVLVAGDQAVEEHLRYMEQLAREAGAELREPLWGRDPAQILYEEAEKMEFIVIGALDRSIVCRRVGRENVADFLADLKKLGMDPIGERGEYHTLVTRVGAVALDVQCGAVEKHGDYYIARLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCG4</accession>
    <name>B1YCG4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">EamA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0534</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349897.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCG4"/>
    <dbReference type="STRING" id="444157.Tneu_0534"/>
    <dbReference type="GeneID" id="6165723"/>
    <dbReference type="KEGG" id="tne:Tneu_0534"/>
    <dbReference type="eggNOG" id="arCOG00271">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1064041_0_0_2"/>
    <dbReference type="OrthoDB" id="42541at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037185">
        <property type="entry name" value="EmrE-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22911">
        <property type="entry name" value="ACYL-MALONYL CONDENSING ENZYME-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22911:SF79">
        <property type="entry name" value="MOBA-LIKE NTP TRANSFERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103481">
        <property type="entry name" value="Multidrug resistance efflux transporter EmrE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="4"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="129"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="261" mass="26295" checksum="3DDC34EC9BD233BF" modified="2008-05-20" version="1">MGPVLRILAAAFLWSTIGVAASLGREYLWIAFFRSLTASLAALAAEARPGRGALLPGLLLGGLFTVYPAAAIYAGIGNAAYLLYTAPLWTALALALWGERPSRRDGVGVALVFAAVALMASSGGISGVGFAAGLASGLFYGLYIAAARRLAAGGRAVDASLGAMPYTLAVTAPALLLKPSPPTLEAAAAGVYLGVFGTVLPYRLFASAVSRVGGAKASVLASLEPVLAALWGALFFGQRPTAPEAAAYVLITAAAVAAARK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCH2</accession>
    <name>B1YCH2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cellulase</fullName>
            <ecNumber evidence="9">3.2.1.4</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0542</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="8">Binds 2 divalent metal cations per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the peptidase M42 family.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.4" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349905.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCH2"/>
    <dbReference type="STRING" id="444157.Tneu_0542"/>
    <dbReference type="GeneID" id="6165759"/>
    <dbReference type="KEGG" id="tne:Tneu_0542"/>
    <dbReference type="eggNOG" id="arCOG01518">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047249_1_0_2"/>
    <dbReference type="OrthoDB" id="30642at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008810">
        <property type="term" value="F:cellulase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05656">
        <property type="entry name" value="M42_Frv"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.40">
        <property type="entry name" value="Peptidase M42, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.10">
        <property type="entry name" value="Zn peptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008007">
        <property type="entry name" value="Peptidase_M42"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051464">
        <property type="entry name" value="Peptidase_M42_aminopept"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023367">
        <property type="entry name" value="Peptidase_M42_dom2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32481">
        <property type="entry name" value="AMINOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32481:SF0">
        <property type="entry name" value="AMINOPEPTIDASE YPDE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05343">
        <property type="entry name" value="Peptidase_M42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001123">
        <property type="entry name" value="PepA_GA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101821">
        <property type="entry name" value="Aminopeptidase/glucanase lid domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53187">
        <property type="entry name" value="Zn-dependent exopeptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="9" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="323"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR001123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001123-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001123-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="362" mass="39338" checksum="B8C508EAFDAB19A0" modified="2008-05-20" version="1">MEDFVALLKTLSEARGPSGFEDEVREIVIKEMEPYVDEVLVDRWGNVIGVKRGASEVRAMVAAHMDEIGLVVDHVEKEGFLRFRPIGGWNEVTLLGQRVWVRTQDGRWVRGVVGVTPPHVTPSGHEREAPEMKDLYIDVGARSREEAEKMGISVGSVAVLERELAVLNGRVATGKAFDDRVGLAVMLYTLRQLGDLPVTLYAVATVQEEVGLRGAQIAADRIAPHYAVALDTTIAADVPGVGERLHVTKLGAGPAIKVIDGGRGGLFIAHPGLRDHIVKIAREAGIPHQLEVLYGGTTDAMAIAFRREGVPAAAISIPTRYVHSPVELVDLSDALNASRLLKQVLEKTTPAAVEKFLERRVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCK0</accession>
    <name>B1YCK0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0571</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349933.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCK0"/>
    <dbReference type="STRING" id="444157.Tneu_0571"/>
    <dbReference type="GeneID" id="6165792"/>
    <dbReference type="KEGG" id="tne:Tneu_0571"/>
    <dbReference type="eggNOG" id="arCOG09817">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1500337_0_0_2"/>
    <dbReference type="OrthoDB" id="30401at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="179" mass="20080" checksum="8053485676945465" modified="2008-05-20" version="1">MLVVLPCEKLAELAARLGCPEAPKHVDDTTKCGRYALYLNYVEEKCAGWSSKAAGEAGEGRMCYVGITLSDLWIEDWGYRSYEAAPYAAEEAEKLLEKVADIANMAVATRAPSVRADTGDLVYRHMLWVWVRRGWETCGKAREIAAYVALKTPQDTYWLYSDSMLHGEEKYGGTLIKLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCL4</accession>
    <name>B1YCL4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase beta domain protein region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0587</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349947.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCL4"/>
    <dbReference type="GeneID" id="6165569"/>
    <dbReference type="KEGG" id="tne:Tneu_0587"/>
    <dbReference type="eggNOG" id="arCOG01204">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_136008_0_0_2"/>
    <dbReference type="OrthoDB" id="9287at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05403">
        <property type="entry name" value="NT_KNTase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="entry name" value="Beta Polymerase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43449">
        <property type="entry name" value="NUCLEOTIDYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43449:SF3">
        <property type="entry name" value="POLYMERASE NUCLEOTIDYL TRANSFERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="Nucleotidyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Polymerase nucleotidyl transferase" evidence="1">
        <location>
            <begin position="21"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="120" mass="13158" checksum="BF07827DD89594AB" modified="2008-05-20" version="1">MPRDIISLVREVEAEREARFRQILEQLCRRATAVALFGSRARGDHTPLSDWDMLAVAAEGEYRVENTPVGQIVWAPLDRLEEALERSTILLDALADAKLLCGDPAALERARAAAAAYAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCP0</accession>
    <name>B1YCP0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Aconitate hydratase 1</fullName>
            <ecNumber evidence="9">4.2.1.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0614</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the aconitase/IPM isomerase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.3" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349973.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCP0"/>
    <dbReference type="STRING" id="444157.Tneu_0614"/>
    <dbReference type="GeneID" id="6165415"/>
    <dbReference type="KEGG" id="tne:Tneu_0614"/>
    <dbReference type="eggNOG" id="arCOG01697">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013476_2_1_2"/>
    <dbReference type="OrthoDB" id="255at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003994">
        <property type="term" value="F:aconitate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01586">
        <property type="entry name" value="AcnA_IRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.19.10:FF:000001">
        <property type="entry name" value="Aconitate hydratase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.499.10">
        <property type="entry name" value="Aconitase, domain 3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.19.10">
        <property type="entry name" value="Aconitase, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015931">
        <property type="entry name" value="Acnase/IPM_dHydase_lsu_aba_1/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001030">
        <property type="entry name" value="Acoase/IPM_deHydtase_lsu_aba"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015928">
        <property type="entry name" value="Aconitase/3IPM_dehydase_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006249">
        <property type="entry name" value="Aconitase/IRP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018136">
        <property type="entry name" value="Aconitase_4Fe-4S_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036008">
        <property type="entry name" value="Aconitase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000573">
        <property type="entry name" value="AconitaseA/IPMdHydase_ssu_swvl"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01341">
        <property type="entry name" value="aconitase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006757">
        <property type="entry name" value="PRK09277.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009520">
        <property type="entry name" value="PRK12881.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11670">
        <property type="entry name" value="ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00330">
        <property type="entry name" value="Aconitase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00694">
        <property type="entry name" value="Aconitase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00415">
        <property type="entry name" value="ACONITASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53732">
        <property type="entry name" value="Aconitase iron-sulfur domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52016">
        <property type="entry name" value="LeuD/IlvD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00450">
        <property type="entry name" value="ACONITASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01244">
        <property type="entry name" value="ACONITASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aconitase/3-isopropylmalate dehydratase large subunit alpha/beta/alpha" evidence="7">
        <location>
            <begin position="67"/>
            <end position="546"/>
        </location>
    </feature>
    <feature type="domain" description="Aconitase A/isopropylmalate dehydratase small subunit swivel" evidence="8">
        <location>
            <begin position="673"/>
            <end position="797"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="878" mass="96251" checksum="4ABB4333807BA09B" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCQ3</accession>
    <name>B1YCQ3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Dehydrogenase (Flavoprotein)-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0627</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349986.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCQ3"/>
    <dbReference type="STRING" id="444157.Tneu_0627"/>
    <dbReference type="GeneID" id="6166265"/>
    <dbReference type="KEGG" id="tne:Tneu_0627"/>
    <dbReference type="eggNOG" id="arCOG00570">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066799_0_0_2"/>
    <dbReference type="OrthoDB" id="6062at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050407">
        <property type="entry name" value="Geranylgeranyl_reductase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42685">
        <property type="entry name" value="GERANYLGERANYL DIPHOSPHATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42685:SF20">
        <property type="entry name" value="HYDROGENASE, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="320" mass="35417" checksum="BC1972A3999642D4" modified="2008-05-20" version="1">MKPVAKVVGLGPSGSAFLKSYGRAAAVELSPRYFKACGEAVPVETPLVDGRYVVDKVKRFKFYHWEREVGEVAYAKPRWYIVDKRAWVESMRAAPQVQDPPEVVVNAGGPYQSLGDKIYIARAYVKGPRLEDETAYFIFPPDAVGFYWAFPHGGVYNVGGGFLGVDNPLPRLYAFVERWLGGGQILDVRGAPFTAFPKVVLHDGRGYRVGEAAGLVYPLTGEGIRPGVLSAIALAEALSTKRPLDSYRRAVKKIVEQIEFQKRLLKLAERLLNRGEALLELADDAVLRDYIEENLTAKTLFTAAAKRPRYGVKLIAALLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCR1</accession>
    <name>B1YCR1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0635</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349994.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCR1"/>
    <dbReference type="STRING" id="444157.Tneu_0635"/>
    <dbReference type="GeneID" id="6165357"/>
    <dbReference type="KEGG" id="tne:Tneu_0635"/>
    <dbReference type="eggNOG" id="arCOG00504">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030571_5_4_2"/>
    <dbReference type="OrthoDB" id="197151at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051453">
        <property type="entry name" value="MBL_Glyoxalase_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46233">
        <property type="entry name" value="HYDROXYACYLGLUTATHIONE HYDROLASE GLOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46233:SF3">
        <property type="entry name" value="HYDROXYACYLGLUTATHIONE HYDROLASE GLOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Metallo-beta-lactamase" evidence="5">
        <location>
            <begin position="12"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="204" mass="22135" checksum="B7066C4CCFE4B0FA" modified="2008-05-20" version="1">MEVEVVTAGPLETNTYLVCRGDECLVIDPAEAAPVVKALGRRGVAAVVATHLHFDHVSGVGELVKLYNAPFYAHPADWAVYRELNEVAVRWGFGVPDIPEPKPTPRRLWDLDVLHTPGHTPGSISLVAEGFVFTGDTLFRRSVGRTDLPLGDWRALTASVCALYQLPKHYLAYPGHGPATTIGEEASGNPFIRHSQCNTLNSTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCV7</accession>
    <name>B1YCV7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PUA domain containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0681</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350040.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCV7"/>
    <dbReference type="STRING" id="444157.Tneu_0681"/>
    <dbReference type="GeneID" id="6165246"/>
    <dbReference type="KEGG" id="tne:Tneu_0681"/>
    <dbReference type="eggNOG" id="arCOG00985">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090468_1_1_2"/>
    <dbReference type="OrthoDB" id="27972at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001731">
        <property type="term" value="P:formation of translation preinitiation complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.120">
        <property type="entry name" value="Pre-PUA domain, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.10">
        <property type="entry name" value="PUA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022430">
        <property type="entry name" value="CHP03684"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015266">
        <property type="entry name" value="DUF1947"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016437">
        <property type="entry name" value="MCT-1/Tma20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002478">
        <property type="entry name" value="PUA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036974">
        <property type="entry name" value="PUA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004521">
        <property type="entry name" value="Uncharacterised_CHP00451"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03684">
        <property type="entry name" value="arCOG00985"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00451">
        <property type="entry name" value="unchar_dom_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22798:SF0">
        <property type="entry name" value="MALIGNANT T-CELL-AMPLIFIED SEQUENCE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22798">
        <property type="entry name" value="MCT-1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09183">
        <property type="entry name" value="DUF1947"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01472">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005067">
        <property type="entry name" value="Tma_RNA-bind_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00359">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="PUA domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50890">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PUA" evidence="1">
        <location>
            <begin position="83"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="172" mass="18907" checksum="54F98E3D02A170BF" modified="2008-05-20" version="1">MKRVRLSNKEVKTLKETYSQLAPVLESADVVEVVQISENSALYLVDGEPLLLKATAGELGAFIVPTLYLIHKSQRGRLLPNYPRAVVDPGAVARIVNGADVMRPGIQQFIGDFNKGDVVLVADGKGRVIAISVALYPRAEMEQMQKGKVLLNVHHLGDKIWDLSLKLVKEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCW3</accession>
    <name>B1YCW3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF373 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0687</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350046.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCW3"/>
    <dbReference type="STRING" id="444157.Tneu_0687"/>
    <dbReference type="GeneID" id="6166307"/>
    <dbReference type="KEGG" id="tne:Tneu_0687"/>
    <dbReference type="eggNOG" id="arCOG04151">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048986_0_1_2"/>
    <dbReference type="OrthoDB" id="31282at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007254">
        <property type="entry name" value="DUF373"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38815:SF1">
        <property type="entry name" value="DUF373 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38815">
        <property type="entry name" value="HYPOTHETICAL MEMBRANE PROTEIN, CONSERVED, DUF373 FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04123">
        <property type="entry name" value="DUF373"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="219"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="248"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="274"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="301"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="331" mass="36628" checksum="B5DC5ECFA3986330" modified="2008-05-20" version="1">MRVLVLYVDRDGDLKSQGIETPVLGRDDVLRLGIRYILQNPDDSDANAIFAAVKIHDRLASEYGVENVNVAVVSGSPDPAVADVVVLRELEQVLASFEADAIYFVSDGPSDEAALPAIQSKRPVISVQRVVVKQARGVEETVTLFKYYLNKAVREPEYRRYTVGVPALLVFMALLGAFFNLEVVKGAINAVFLFVAFFATLYGFGIYDFLRDVLRRFEITFIITLVSLFVIVIYLVSIVLHVSWIPDYAALLAAALPYVSYLAEAYITTGKIRYGGVIAGVATVSFFYFLLPVLVKPPRDIVETFIAVALFTASTFVAVVVVYMVRALSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD08</accession>
    <name>B1YD08_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Nucleotidyltransferase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0732</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350091.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD08"/>
    <dbReference type="STRING" id="444157.Tneu_0732"/>
    <dbReference type="GeneID" id="6165494"/>
    <dbReference type="KEGG" id="tne:Tneu_0732"/>
    <dbReference type="eggNOG" id="arCOG04119">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_120784_0_0_2"/>
    <dbReference type="OrthoDB" id="26089at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018700">
        <property type="entry name" value="DUF2204"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09970">
        <property type="entry name" value="DUF2204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="Nucleotidyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="191" mass="22058" checksum="C47E82545EBF8D72" modified="2008-05-20" version="1">MRLDKYREALKLVAAKLQERDVEFVLVGSAVLPFLYKIEYDPGDIDLFILNKSTVLDNELFEEIASQNDWDMGTSDHGTIYYEIIARGEAVRVDLLENILDIYIPPELLSDLKHVDVNGLKIKSIGLEELLVLKAKIATREAEEFINEVARLILERNIKIDYDKIKKYANLYPEDSEGILKRLRRNGIYVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD51</accession>
    <name>B1YD51_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0775</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD51"/>
    <dbReference type="STRING" id="444157.Tneu_0775"/>
    <dbReference type="KEGG" id="tne:Tneu_0775"/>
    <dbReference type="eggNOG" id="arCOG00737">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_157721_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36216:SF1">
        <property type="entry name" value="HTH ARSR-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36216">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR, TRMB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01022">
        <property type="entry name" value="HTH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="7"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="134" mass="15437" checksum="D30EE20187FAD32E" modified="2008-05-20" version="1">MSFVEPSEVRRRIVELLRERGSASVYQIAKALGISYGAAQWHLYVLERDGVVFTVVQGRKRIAVLRDSLDAYLNSLKMTDFFRDLWAYLRSRGIDGSTPFMEAVLSLEEDRREVGLSLLSIARNLYHWRRGQGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD59</accession>
    <name>B1YD59_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0783</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350142.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD59"/>
    <dbReference type="STRING" id="444157.Tneu_0783"/>
    <dbReference type="GeneID" id="6164697"/>
    <dbReference type="KEGG" id="tne:Tneu_0783"/>
    <dbReference type="eggNOG" id="arCOG01075">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037162_20_2_2"/>
    <dbReference type="OrthoDB" id="40462at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04673">
        <property type="entry name" value="NUDIX_ADPRase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.79.10">
        <property type="entry name" value="Nucleoside Triphosphate Pyrophosphohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43736">
        <property type="entry name" value="ADP-RIBOSE PYROPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43736:SF1">
        <property type="entry name" value="DIHYDRONEOPTERIN TRIPHOSPHATE DIPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="Nudix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="139" mass="15413" checksum="BEC69531B33ED5F2" modified="2008-05-20" version="1">MERPVVAVAAAAVRGGEILLIKRKYPPSAGKWSLPGGHVELGEKLEEAVLRELKEETGLEGVVKRFLKPVEYIEREGGRVKYHFVILVYLVEVADGAQPKASDDAEDAAFVPVEKALEMDLTKTTREVIDYLLISRILL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDA9</accession>
    <name>B1YDA9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Alanine--glyoxylate transaminase</fullName>
            <ecNumber evidence="9">2.6.1.44</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0835</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.44" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350192.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDA9"/>
    <dbReference type="STRING" id="444157.Tneu_0835"/>
    <dbReference type="GeneID" id="6164339"/>
    <dbReference type="KEGG" id="tne:Tneu_0835"/>
    <dbReference type="eggNOG" id="arCOG00082">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027686_0_1_2"/>
    <dbReference type="OrthoDB" id="35685at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008453">
        <property type="term" value="F:alanine-glyoxylate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004760">
        <property type="term" value="F:L-serine-pyruvate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019265">
        <property type="term" value="P:glycine biosynthetic process, by transamination of glyoxylate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020578">
        <property type="entry name" value="Aminotrans_V_PyrdxlP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024169">
        <property type="entry name" value="SP_NH2Trfase/AEP_transaminase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21152:SF24">
        <property type="entry name" value="ALANINE--GLYOXYLATE AMINOTRANSFERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21152">
        <property type="entry name" value="AMINOTRANSFERASE CLASS V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000524">
        <property type="entry name" value="SPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00595">
        <property type="entry name" value="AA_TRANSFER_CLASS_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotransferase class V" evidence="8">
        <location>
            <begin position="34"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="384" mass="41651" checksum="1ABD810AE0878171" modified="2008-05-20" version="1">MYRRYGERRVLTPGPTALPQWVREALAKETTNPDLDPQFFQLYQDAVDMLKRLIGTERGALYIWAGEAMLGLEAAVANAVKPGTKVLVVDNGVYGSGFAELVKMYGGRPVAMGLDWRRAADPAAVERALEREKDVEVVTLVHCDTPSAVYNGLEEVAKIVSSRGALLIVDAVSSIGADRLEFDGWGVGVMIGGSQKALNAPPGLTIMAVSRAALDRSREVGRGSYYMSYEVWEEWLGRGGFPYTMPDVLVYALRESLRRIHEEGLPSVFQRHRAAREAVRRGLAAMGLELYPACAECNCPTATAFKPPVPPAELRRVAWEKYGVLIAGSWGPLEGQLARIGHMGVQASLDYVTTALAAVGASLRDLGVSVDVGKALEAAVEAFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDB6</accession>
    <name>B1YDB6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0842</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350199.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDB6"/>
    <dbReference type="STRING" id="444157.Tneu_0842"/>
    <dbReference type="GeneID" id="6164430"/>
    <dbReference type="KEGG" id="tne:Tneu_0842"/>
    <dbReference type="eggNOG" id="arCOG05689">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2285147_0_0_2"/>
    <dbReference type="OrthoDB" id="25148at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="101" mass="11429" checksum="DCA6B66F0ED7A5A1" modified="2008-05-20" version="1">MACVDVETAEKVARRKALGALASLRRSIKVFKVRVGDDWLFGFVKTRFKGEGFQIAVKLVYVDCRGSPLERLPSDLEEKVRRYVEEGVASLLERELSNVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDB8</accession>
    <name>B1YDB8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Molybdenum cofactor synthesis domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0844</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDB8"/>
    <dbReference type="STRING" id="444157.Tneu_0844"/>
    <dbReference type="KEGG" id="tne:Tneu_0844"/>
    <dbReference type="eggNOG" id="arCOG00216">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010186_7_2_2"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061599">
        <property type="term" value="F:molybdopterin molybdotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00887">
        <property type="entry name" value="MoeA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="entry name" value="MoaB/Mog-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.340.10">
        <property type="entry name" value="MoeA, C-terminal, domain IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.105.10">
        <property type="entry name" value="Molybdopterin biosynthesis moea protein, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.190.11">
        <property type="entry name" value="Molybdopterin biosynthesis moea protein, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038987">
        <property type="entry name" value="MoeA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005111">
        <property type="entry name" value="MoeA_C_domain_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036688">
        <property type="entry name" value="MoeA_C_domain_IV_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005110">
        <property type="entry name" value="MoeA_linker/N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036135">
        <property type="entry name" value="MoeA_linker/N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF045515">
        <property type="entry name" value="Glp_gephyrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00177">
        <property type="entry name" value="molyb_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10192">
        <property type="entry name" value="MOLYBDOPTERIN BIOSYNTHESIS PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10192:SF19">
        <property type="entry name" value="MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MJ0666-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03454">
        <property type="entry name" value="MoeA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03453">
        <property type="entry name" value="MoeA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63867">
        <property type="entry name" value="MoeA C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63882">
        <property type="entry name" value="MoeA N-terminal region -like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="Molybdenum cofactor biosynthesis proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoaB/Mog" evidence="3">
        <location>
            <begin position="192"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="421" mass="44569" checksum="C43D371AE75FD378" modified="2008-05-20" version="1">MQRPAAYVRGFKTLTPIAEAQRIFLAALTHTPGEEAVPTPQAVGRYASRDVVSPVDVPPFDRAAFDGYAVRSADTVGASRTNPALLRIVGKALPGAPYGGEVGPGEAVEVATGAPLPRGADAVVPYEEAAARGGQLEVYKAVPQFYYVSRRGEDVAAGEVVVRRGRRIKPWDVGVLASVGVKAVYVYRLTAALISTGNELVELEEAPPPPGKVVNSTRHVVAAMLRELGVEVHYLGVVPDDEEAIYRAVAEALRRFDLVITTGGVSVGEPDYVVKAVSRLKPEAFVHGIAARPGRPNSAAVVGGKAVVMLSGFPVASVVGFEVFVKPAVLKMVGGREEPLPVAKAVLTRRVTTPINVRSYVRVRVYKRGGRLYAEPLAVTGSGVLSTLTRGNGLLIVPESREGYDEGEEVEVALLGPIEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDD0</accession>
    <name>B1YDD0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">BFN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0856</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350213.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDD0"/>
    <dbReference type="STRING" id="444157.Tneu_0856"/>
    <dbReference type="GeneID" id="6164388"/>
    <dbReference type="KEGG" id="tne:Tneu_0856"/>
    <dbReference type="eggNOG" id="arCOG01759">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096111_3_0_2"/>
    <dbReference type="OrthoDB" id="30741at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.690.10">
        <property type="entry name" value="Bifunctional nuclease domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036104">
        <property type="entry name" value="BFN_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003729">
        <property type="entry name" value="Bi_nuclease_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15160:SF1">
        <property type="entry name" value="VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15160">
        <property type="entry name" value="VON HIPPEL-LINDAU PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02577">
        <property type="entry name" value="BFN_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103256">
        <property type="entry name" value="Hypothetical protein TM0160"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51658">
        <property type="entry name" value="BFN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BFN" evidence="1">
        <location>
            <begin position="4"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="153" mass="16606" checksum="43ADF51755EC7461" modified="2008-05-20" version="1">MVKYLKAELVSILETVDSHGQLVGIMLIGAEEWGDKAVPIIIGSAETLSIKKGLGEVDFPRPLSHDLFVEIIEALGAAVEKITIDALVSNTYTATVYIKDRDGKLHTFDARPSDAVALAVRVNAPIYIAESLGKYAEDLRKYLPPPSGKITEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDD4</accession>
    <name>B1YDD4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RNA methylase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0860</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350217.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDD4"/>
    <dbReference type="STRING" id="444157.Tneu_0860"/>
    <dbReference type="GeneID" id="6164486"/>
    <dbReference type="KEGG" id="tne:Tneu_0860"/>
    <dbReference type="eggNOG" id="arCOG01631">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068443_0_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016279">
        <property type="term" value="F:protein-lysine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026170">
        <property type="entry name" value="FAM173A/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13610">
        <property type="entry name" value="METHYLTRANSFERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13610:SF11">
        <property type="entry name" value="METHYLTRANSFERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02353">
        <property type="entry name" value="CMAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="6">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="219" mass="24867" checksum="A88C88939402E0D3" modified="2008-05-20" version="1">MYDVPFVATPEVVVRRMLQLARVQPGEVLYDLGSGDGRIVIIAAKEFGARAFGVEIRKDLYEQSTARIKDLGLSDRASIINGSFYEVPLADADVVTMYLLTSVNERLRPKLERELRPAARVVTHDFEVPGWRPAVVEEVYEDWRSHKLYLYRIPGKEIPLPGKSKPVEDRWLRQVAELIDGNTSLEEIAQKLGVTIRRVREAVEELRKIGAVDEVKVVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDD5</accession>
    <name>B1YDD5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Deoxyhypusine synthase</fullName>
            <ecNumber evidence="3">2.5.1.46</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0861</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the deoxyhypusine synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.46" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350218.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDD5"/>
    <dbReference type="STRING" id="444157.Tneu_0861"/>
    <dbReference type="GeneID" id="6164326"/>
    <dbReference type="KEGG" id="tne:Tneu_0861"/>
    <dbReference type="eggNOG" id="arCOG04142">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039781_1_0_2"/>
    <dbReference type="OrthoDB" id="17730at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034038">
        <property type="term" value="F:deoxyhypusine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.910.10">
        <property type="entry name" value="Deoxyhypusine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002773">
        <property type="entry name" value="Deoxyhypusine_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036982">
        <property type="entry name" value="Deoxyhypusine_synthase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002294">
        <property type="entry name" value="PRK01221.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11703">
        <property type="entry name" value="DEOXYHYPUSINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11703:SF0">
        <property type="entry name" value="DEOXYHYPUSINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01916">
        <property type="entry name" value="DS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="DHS-like NAD/FAD-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="292" mass="31761" checksum="64153EC872156690" modified="2008-05-20" version="1">MREVVELFRRIGGFQALHVAEAYDVLKEAVERADLRFLSFTGNLLATGLREIIAEALGRRLFNVVVTTAGALDHDIAKAMGAVYAPASFDLDDVDLARRGLHRLGNVVIKKEEYGPLVEKFVLRFCERIGGRALGTYELAEELGREMPESSVLGAAARAGVKVFVPGIVDGAVGTALLTCNDLARAKRGGLRVQIDPLRDEEALRELVYGSRKLAALIAGGGISKHHVIWWAQFRGGLDYVVYITTAVEYDGSLSGARPREAVSWGKVKPEAKSVYIYADATLVLPILLKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDI7</accession>
    <name>B1YDI7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">tRNA synthetase class II (D K and N)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0913</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350270.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDI7"/>
    <dbReference type="STRING" id="444157.Tneu_0913"/>
    <dbReference type="GeneID" id="6164421"/>
    <dbReference type="KEGG" id="tne:Tneu_0913"/>
    <dbReference type="eggNOG" id="arCOG00409">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004553_2_2_2"/>
    <dbReference type="OrthoDB" id="131570at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004816">
        <property type="term" value="F:asparagine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006421">
        <property type="term" value="P:asparaginyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF005052">
        <property type="entry name" value="PRK06462.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22594:SF48">
        <property type="entry name" value="ASPARAGINYL-TRNA SYNTHETASE-RELATED PROTEIN (N-TRUNCATION)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22594">
        <property type="entry name" value="ASPARTYL/LYSYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminoacyl-transfer RNA synthetases class-II family profile" evidence="6">
        <location>
            <begin position="49"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="353" mass="41083" checksum="BC559307252DBD5B" modified="2008-05-20" version="1">MDYKEPRYHPAVVEFEKMVADRERYKKTVEEWLRYSWRWAQTDKYKLVFKVQAAIVKAIREYLDGRGFVEVLPPIVGPVTDPGIRGAKQASIDFYGHEYKVMSSAILYKQYMAASLGKIYFVSPNLRLEPPDSLYTGRHLVEFFQVDIEMYGADYGQAMEVAEGLVTHVVKRVREEYGRQLEDVLGRSLPEFKPPFKRYPHSEAIKIVNSYGCRNDPRSELTWECEKLMSGLHAQPFFVYDYPRGSRGFYDREDPQRPGVLRDFDMLYPEGFGEAISGAEREYEPERVMARIREGGEDPRKYEWFLQMLKELYPLKTAGFGIGVERLTRYICGLRALWEARPYPKVAGIAPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDK2</accession>
    <name>B1YDK2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger TFIIB-type domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0928</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350285.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDK2"/>
    <dbReference type="STRING" id="444157.Tneu_0928"/>
    <dbReference type="GeneID" id="6164527"/>
    <dbReference type="KEGG" id="tne:Tneu_0928"/>
    <dbReference type="eggNOG" id="arCOG03776">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_992544_0_0_2"/>
    <dbReference type="OrthoDB" id="93530at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013137">
        <property type="entry name" value="Znf_TFIIB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08271">
        <property type="entry name" value="Zn_Ribbon_TF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="220"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="249"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="TFIIB-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="280" mass="30264" checksum="95594B10EB030869" modified="2008-05-20" version="1">MIVQCPYCGARYEAPPGRRFYVCPYCGTVVSEGRTYERVYIFKPSVDKTAAFRTALGFRPVGAPEDLPAASPTGAELHFLPLYLYHVVFEPLPELETYAAALAMSKPPFELPSGYSFPARWRTPFKPSLERVGVFHQPDLEPEAAFRSLEEVVEEARTYASVFKTRVQVEWSFEGIVYYPFWALTYQYGGRSYGALVDGADGSLLRLEYPLSRRGRAEGLALGVAAALGAAAVGALAAFALGLPPSSGAAGGGLAGLGALLRLTAFAAARRGRYEGGARL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDK5</accession>
    <name>B1YDK5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable RNA 2'-phosphotransferase</fullName>
            <ecNumber evidence="5">2.7.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">kptA</name>
        <name evidence="6" type="ordered locus">Tneu_0931</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate (APPR&gt;P). May function as an ADP-ribosylase.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the KptA/TPT1 family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.-" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350288.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDK5"/>
    <dbReference type="STRING" id="444157.Tneu_0931"/>
    <dbReference type="GeneID" id="6164394"/>
    <dbReference type="KEGG" id="tne:Tneu_0931"/>
    <dbReference type="eggNOG" id="arCOG04063">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052998_4_1_2"/>
    <dbReference type="OrthoDB" id="24376at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003950">
        <property type="term" value="F:NAD+ poly-ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000215">
        <property type="term" value="F:tRNA 2'-phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006388">
        <property type="term" value="P:tRNA splicing, via endonucleolytic cleavage and ligation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.170.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.970">
        <property type="entry name" value="RNA 2'-phosphotransferase, Tpt1/KptA family, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00299">
        <property type="entry name" value="KptA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002745">
        <property type="entry name" value="Ptrans_KptA/Tpt1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042081">
        <property type="entry name" value="RNA_2'-PTrans_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022928">
        <property type="entry name" value="RNA_2'-PTrans_KptA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042080">
        <property type="entry name" value="RNA_2'-PTrans_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12684">
        <property type="entry name" value="PUTATIVE PHOSPHOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12684:SF2">
        <property type="entry name" value="TRNA 2'-PHOSPHOTRANSFERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01885">
        <property type="entry name" value="PTS_2-RNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56399">
        <property type="entry name" value="ADP-ribosylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0520">NAD</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="209" mass="23079" checksum="069B1A60F5DE2AEC" modified="2008-05-20" version="1">MRDIRRCPVCGAYVEVEVHCGAPTAAVLDGATRLKISKLLSLALRHSPRVLGIELDGEGWADLNALAEGMRRAGLPASPQVLKAVAQLDDKGRFEIRGGRVRARYGHTIKVHIRYEVDSDTPLLYHGTAIHVLPSILSQGILPMRRLYVHLAVDVETACLNARRRQNPAVVEVDADCVRKSGNPIYKAAEKIRLTPHVPPTCVRRWTTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDN6</accession>
    <name>B1YDN6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Binding protein, putative</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0964</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350319.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDN6"/>
    <dbReference type="STRING" id="444157.Tneu_0964"/>
    <dbReference type="GeneID" id="6164569"/>
    <dbReference type="KEGG" id="tne:Tneu_0964"/>
    <dbReference type="eggNOG" id="arCOG00229">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061511_0_0_2"/>
    <dbReference type="OrthoDB" id="14917at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052738">
        <property type="entry name" value="ABC-Tungstate_binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37945">
        <property type="entry name" value="EXTRACELLULAR TUNGSTATE BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37945:SF1">
        <property type="entry name" value="EXTRACELLULAR TUNGSTATE BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12849">
        <property type="entry name" value="PBP_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PBP" evidence="1">
        <location>
            <begin position="43"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="304" mass="33185" checksum="0EC5EFBD657EA801" modified="2008-05-20" version="1">MSKIGYLIIVVALAVAVALFIASQRPQTAAPQQTAPRQHAVLYMATTTSVKDTGLLDVLIPDFERWAAERGYDVEVRYSAVGTGQALLMAARGDVDVVLVHAPDLERRYLENGTLKCRDVIAYNFFIVVGPRGDPAGARGTSAAEAFRRIAEAKAPFVSRGDRSGTHIKELSLWREAIGREPDPKVDTWYISAGAGMGQTLLLANEKRAYALTDVGTWLRYRDRLDQLEVVVPAAPDLINIYSFEIVKPSPAAKLMAQYMLTRGQEVIGNLTVAGQPLFTPISRADPRAMEWIKPAVFGPSCVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDR7</accession>
    <name>B1YDR7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">CRISPR-associated HD domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0998</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350350.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDR7"/>
    <dbReference type="STRING" id="444157.Tneu_0998"/>
    <dbReference type="GeneID" id="6164799"/>
    <dbReference type="KEGG" id="tne:Tneu_0998"/>
    <dbReference type="eggNOG" id="arCOG01443">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1248324_0_0_2"/>
    <dbReference type="OrthoDB" id="26830at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09641">
        <property type="entry name" value="Cas3''_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3210.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006483">
        <property type="entry name" value="CRISPR-assoc_Cas3_HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038257">
        <property type="entry name" value="CRISPR-assoc_Cas3_HD_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01596">
        <property type="entry name" value="cas3_HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18019">
        <property type="entry name" value="Cas3_HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109604">
        <property type="entry name" value="HD-domain/PDEase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51643">
        <property type="entry name" value="HD_CAS3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD Cas3-type" evidence="4">
        <location>
            <begin position="4"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="189" mass="21241" checksum="3481E36D154701A0" modified="2008-05-20" version="1">MTCLAGPGEPLELHLEEVASCMAARGRWLVPKLARVLGVEEALARDLIVFVGYAHDVGKADREYEGADRYFPHHEAKSAAAVYKALDSADWRIRRLAVYAVARHHYSFKKPQGLGKVTFQPRCTVAVSWRPETELFRKALGLLFRGVEDDIYNAAVSRDFLKDSLKYAGMALLGLLNDCDYEVASRNRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDS7</accession>
    <name>B1YDS7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1008</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 8">Cell membrane</location>
            <topology evidence="1 8">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350360.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDS7"/>
    <dbReference type="STRING" id="444157.Tneu_1008"/>
    <dbReference type="GeneID" id="6165058"/>
    <dbReference type="KEGG" id="tne:Tneu_1008"/>
    <dbReference type="eggNOG" id="arCOG00163">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021838_1_0_2"/>
    <dbReference type="OrthoDB" id="28023at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42929:SF1">
        <property type="entry name" value="INNER MEMBRANE ABC TRANSPORTER PERMEASE PROTEIN YDCU-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42929">
        <property type="entry name" value="INNER MEMBRANE ABC TRANSPORTER PERMEASE PROTEIN YDCU-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="82"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="114"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="158"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="209"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="265"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="316"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="380"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="414"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="562"/>
            <end position="587"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="78"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="376"/>
            <end position="588"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="600" mass="64132" checksum="4554494B2F21AF07" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDV0</accession>
    <name>B1YDV0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Signal peptidase I</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Tneu_1032</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalytic component of the signal peptidase complex (SPC) which catalyzes the cleavage of N-terminal signal sequences from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Specifically cleaves N-terminal signal peptides that contain a hydrophobic alpha-helix (h-region) shorter than 18-20 amino acids.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350383.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDV0"/>
    <dbReference type="STRING" id="444157.Tneu_1032"/>
    <dbReference type="MEROPS" id="S26.017"/>
    <dbReference type="GeneID" id="6164924"/>
    <dbReference type="KEGG" id="tne:Tneu_1032"/>
    <dbReference type="eggNOG" id="arCOG01739">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1551904_0_0_2"/>
    <dbReference type="OrthoDB" id="4822at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06530">
        <property type="entry name" value="S26_SPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.109.10">
        <property type="entry name" value="Umud Fragment, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019756">
        <property type="entry name" value="Pept_S26A_signal_pept_1_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001733">
        <property type="entry name" value="Peptidase_S26B"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02228">
        <property type="entry name" value="sigpep_I_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10806">
        <property type="entry name" value="SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10806:SF6">
        <property type="entry name" value="SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10502">
        <property type="entry name" value="Peptidase_S26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="LexA/Signal peptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00501">
        <property type="entry name" value="SPASE_I_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="3 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="145"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase S26" evidence="12">
        <location>
            <begin position="10"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004648"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00033305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00045533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF10502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB39963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="179" mass="19632" checksum="AC4977CD0A746066" modified="2008-05-20" version="1">MRGWARELLWFVAIVVALVAYSAAAGVAWPIAVVSSYSMEPTLRVGDFVFLTGASCKSASPGDIVVYVARNPLWAGSWIIHRVYQKLTDVGCGLVTWGDNNPAPDQQAGEPLVTNNIIGKVLFTVPYVGVFPLVVRPQGVGGEAMAAWLGRLALFSAAVYLFYLYFREPRRGRRRRKAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDW3</accession>
    <name>B1YDW3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1045</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350396.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDW3"/>
    <dbReference type="STRING" id="444157.Tneu_1045"/>
    <dbReference type="GeneID" id="6164818"/>
    <dbReference type="KEGG" id="tne:Tneu_1045"/>
    <dbReference type="eggNOG" id="arCOG09853">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_193441_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="80" mass="9509" checksum="A2527D90036C7423" modified="2008-05-20" version="1">MGWWKWFGGCHSWGGGPGRGPWSHLPPHLRPGYWGMWAAGTWGPTQWSKETELRYLEELRRYITEVVLKDIDRRIEELKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDW6</accession>
    <name>B1YDW6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">tRNA-ribosyltransferase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1048</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350399.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDW6"/>
    <dbReference type="STRING" id="444157.Tneu_1048"/>
    <dbReference type="GeneID" id="6165166"/>
    <dbReference type="KEGG" id="tne:Tneu_1048"/>
    <dbReference type="eggNOG" id="arCOG00996">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_873238_0_0_2"/>
    <dbReference type="OrthoDB" id="6871at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.105">
        <property type="entry name" value="Queuine tRNA-ribosyltransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036511">
        <property type="entry name" value="TGT-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51713">
        <property type="entry name" value="tRNA-guanine transglycosylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="306" mass="34053" checksum="3DD373740079990D" modified="2008-05-20" version="1">MRVVLGSPLSAVPKPWHHFDVPGVMVNALDIRRDPRAALGYEGELWVDSGGYQILKRGLSIDVDKIAEIYRRVDAQLYLSLDVPPSPSDPPDAAEKKMRKSYQNWLKLRRAVGDAVVPVLHVYRDEALFERYLALYRDAPALAIGAAVPYVLITRGAPRGSRQHALSLIKRAREEFRGALHVLGMGSPSVTPILAALGVDSTDSATWRLKAAYGKVLLPGGGERHVTDRPVNFGRAKPKDGELEELRRFLAQYGFPSLDGFHERIARSFEYRALVNAFVVIKSAAYPPRPPAFRRLYALFAGPRHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDX7</accession>
    <name>B1YDX7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1059</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350409.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDX7"/>
    <dbReference type="STRING" id="444157.Tneu_1059"/>
    <dbReference type="GeneID" id="6166280"/>
    <dbReference type="KEGG" id="tne:Tneu_1059"/>
    <dbReference type="eggNOG" id="arCOG00742">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1485942_0_0_2"/>
    <dbReference type="OrthoDB" id="27411at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="161" mass="17534" checksum="AFF70253684C34C8" modified="2008-05-20" version="1">MSVRWVLRRALELGSFSVYRLASLSPFSNSTVYYAVEKLNRDGALRCGAGRCEANAGAYLAYYRAFGCDDVLAEAVKREFGQFDRDEICGFFASLADTHPGTWLELAVAALLRGVKSSLVAAIAAKYGMELDEIHRGVAVNGVFAGHCRRCGLVVTPCIKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="97" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE43</accession>
    <name>B1YE43_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="19">Bifunctional NAD(P)H-hydrate repair enzyme</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="19">Nicotinamide nucleotide repair protein</fullName>
        </alternativeName>
        <domain>
            <recommendedName>
                <fullName evidence="19">ADP-dependent (S)-NAD(P)H-hydrate dehydratase</fullName>
                <ecNumber evidence="19">4.2.1.136</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="19">ADP-dependent NAD(P)HX dehydratase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="19">NAD(P)H-hydrate epimerase</fullName>
                <ecNumber evidence="19">5.1.99.6</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="17" type="primary">nnrD</name>
        <name evidence="18" type="synonym">nnrE</name>
        <name evidence="22" type="ordered locus">Tneu_1126</name>
    </gene>
    <organism evidence="22 23">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="22" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14 19">Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.</text>
    </comment>
    <comment type="function">
        <text evidence="17">Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.</text>
    </comment>
    <comment type="function">
        <text evidence="18">Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 18 19">
            <text>(6R)-NADHX = (6S)-NADHX</text>
            <dbReference type="Rhea" id="RHEA:32215"/>
            <dbReference type="ChEBI" id="CHEBI:64074"/>
            <dbReference type="ChEBI" id="CHEBI:64075"/>
            <dbReference type="EC" id="5.1.99.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 18 19">
            <text>(6R)-NADPHX = (6S)-NADPHX</text>
            <dbReference type="Rhea" id="RHEA:32227"/>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
            <dbReference type="ChEBI" id="CHEBI:64077"/>
            <dbReference type="EC" id="5.1.99.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15 17 19">
            <text>(6S)-NADHX + ADP = AMP + phosphate + NADH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:32223"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:64074"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="4.2.1.136"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="16 17 19">
            <text>(6S)-NADPHX + ADP = AMP + phosphate + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:32235"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="4.2.1.136"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="18 19">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="18 19">Binds 1 potassium ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="17">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="17">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="17">Belongs to the NnrD/CARKD family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="18">Belongs to the NnrE/AIBP family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 19">In the C-terminal section; belongs to the NnrD/CARKD family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 19">In the N-terminal section; belongs to the NnrE/AIBP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.136" evidence="19"/>
    <dbReference type="EC" id="5.1.99.6" evidence="19"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350475.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE43"/>
    <dbReference type="STRING" id="444157.Tneu_1126"/>
    <dbReference type="GeneID" id="6166231"/>
    <dbReference type="KEGG" id="tne:Tneu_1126"/>
    <dbReference type="eggNOG" id="arCOG00018">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024853_4_1_2"/>
    <dbReference type="OrthoDB" id="15148at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052855">
        <property type="term" value="F:ADP-dependent NAD(P)H-hydrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052856">
        <property type="term" value="F:NAD(P)HX epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110051">
        <property type="term" value="P:metabolite repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046496">
        <property type="term" value="P:nicotinamide nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01171">
        <property type="entry name" value="YXKO-related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10260:FF:000003">
        <property type="entry name" value="Multifunctional fusion protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10260">
        <property type="entry name" value="YjeF N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01965">
        <property type="entry name" value="NADHX_dehydratase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01966">
        <property type="entry name" value="NADHX_epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017953">
        <property type="entry name" value="Carbohydrate_kinase_pred_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000631">
        <property type="entry name" value="CARKD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030677">
        <property type="entry name" value="Nnr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004443">
        <property type="entry name" value="YjeF_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036652">
        <property type="entry name" value="YjeF_N_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00196">
        <property type="entry name" value="yjeF_cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00197">
        <property type="entry name" value="yjeF_nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12592:SF0">
        <property type="entry name" value="ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12592">
        <property type="entry name" value="ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01256">
        <property type="entry name" value="Carb_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03853">
        <property type="entry name" value="YjeF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017184">
        <property type="entry name" value="Nnr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="Ribokinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64153">
        <property type="entry name" value="YjeF N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01049">
        <property type="entry name" value="YJEF_C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51383">
        <property type="entry name" value="YJEF_C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51385">
        <property type="entry name" value="YJEF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 17 19" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11 18 19" id="KW-0413">Isomerase</keyword>
    <keyword evidence="22" id="KW-0418">Kinase</keyword>
    <keyword evidence="12 17 19" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 18 19" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="10 17 19" id="KW-0520">NAD</keyword>
    <keyword evidence="8 17 19" id="KW-0521">NADP</keyword>
    <keyword evidence="6 17 19" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 18 19" id="KW-0630">Potassium</keyword>
    <keyword evidence="23" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="22" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YjeF N-terminal" evidence="21">
        <location>
            <begin position="9"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="YjeF C-terminal" evidence="20">
        <location>
            <begin position="220"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <begin position="56"/>
            <end position="60"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <begin position="131"/>
            <end position="137"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="18">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="255"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="323"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="370"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="435"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="436"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00025153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00048238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00049209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="PIRNR" id="PIRNR017184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS51383"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="PROSITE" id="PS51385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="EMBL" id="ACB40056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="504" mass="52835" checksum="4A84367401817C90" modified="2008-05-20" version="1">MDAVSSLEMYVVDRNAEWLGVPRLVLMENAGAAVARNVVGRFPGARRVLVVCGTGDNGGDGYVAARHLHGAGLWVRVVGLGEPREGAARANFEAVRRLWGVELALAATPLELLALQDWFLWADVVVDAVLGTGVRGALREPHATAVDLMNAAPAPKVAVDVPSGLDPDTGEVRDRAVRAALTVTFHRPKRGLLAEGARRYVGDLVVEPIGIPPEAEVVVGPGDFAYLDFSRRADAKKGDHGRVLVVGGSLEYSGAPMYVALAALRSGVDLAAVAAPEPAAQAAKAYSPDLIAVPLEGPRLSLRHVEKVLRLAERFDVVAIGPGLGLEGETPDAVREIAARVKKPLVVDADAIKALGGSPVGGPQVVYTPHAGEFKALTGVEPPRGLRERAEAVREWAGRIGAVILLKGRYDVVSDGRRVKINATGTPAMTVGGTGDVLTGVAAAFMTKTRDPLEAAAVAAFVNGLAGEEAAAQLGFHITASDLIEKIPAVVRRYAREDITSPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE61</accession>
    <name>B1YE61_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CRISPR-associated protein, APE2256 family</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1144</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350493.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE61"/>
    <dbReference type="GeneID" id="6165764"/>
    <dbReference type="KEGG" id="tne:Tneu_1144"/>
    <dbReference type="eggNOG" id="arCOG01936">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1500332_0_0_2"/>
    <dbReference type="OrthoDB" id="28215at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="186" mass="19900" checksum="AFA90BD64EA210E2" modified="2008-05-20" version="1">MRYLLEAVGARGAGRLLSRVGGDCPDPRSVPELHTALALGGGVELELAAADTPESAAAARWLLECAGRLGVAKPVGFFVVRGLAPGSLTGAAELFDQAVVRLLRRRGEAYVGVTSGWRVLSIYLALAAWVSGAVPVYVDRSGGLHALPRVSLGVEDLPRELLYREDGRPRRWLEELSRSGRRFSSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="38" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8K8</accession>
    <name>B1Y8K8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1158</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8K8"/>
    <dbReference type="STRING" id="444157.Tneu_1158"/>
    <dbReference type="KEGG" id="tne:Tneu_1158"/>
    <dbReference type="eggNOG" id="arCOG05548">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2379540_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="94" mass="10136" checksum="1DE7EA8CB47D40EE" modified="2008-05-20" version="1">MFILLCCGWGVRRVVLLALGAFALLAAVSFTNVAVFSVNASLPPGMKYAGADACRALAPSGHKVGFYVNTSSLYQGNAVWLKKRHLMALKRKHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8L2</accession>
    <name>B1Y8L2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP10</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1162</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8L2"/>
    <dbReference type="STRING" id="444157.Tneu_1162"/>
    <dbReference type="KEGG" id="tne:Tneu_1162"/>
    <dbReference type="eggNOG" id="arCOG00746">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_181231_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="62" mass="6667" checksum="59E046B87E6DB02B" modified="2008-05-20" version="1">MCAAFVVAVVHVLGVHAYTLARYGVDPNDDVETAVKKLEAKAPHLARLLREVASGSPLLFHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8U5</accession>
    <name>B1Y8U5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1247</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350593.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8U5"/>
    <dbReference type="STRING" id="444157.Tneu_1247"/>
    <dbReference type="GeneID" id="6165932"/>
    <dbReference type="KEGG" id="tne:Tneu_1247"/>
    <dbReference type="eggNOG" id="arCOG00589">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1248326_0_0_2"/>
    <dbReference type="OrthoDB" id="25876at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobQ/CobB/MinD/ParA nucleotide binding" evidence="1">
        <location>
            <begin position="7"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="222" mass="25025" checksum="DC90F98A8DDB0983" modified="2008-05-20" version="1">MIRAGTVAFTSCKGGAGKTTLSVNTAAALPINVLLIDLGGGASRYFPAPQIDIEKVTPEVEAYKDERTKNLFVIPLAVDPASVWRIENWEEIFRNLTEAVRRNVVKHSIDAVFIDMYQLSRITPIEVFGLDKADVIVLVVEGYEDCTKPLALIKRFFDAKLYIVLNKHERGIEYQGAALKIPFSATLDYYNRRGQLYTKPVIKLAELLMQDLKKVGKSRWFE</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8V5</accession>
    <name>RS8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein uS8</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">30S ribosomal protein S8</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps8</name>
        <name type="ordered locus">Tneu_1257</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS8 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350603.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8V5"/>
    <dbReference type="SMR" id="B1Y8V5"/>
    <dbReference type="STRING" id="444157.Tneu_1257"/>
    <dbReference type="GeneID" id="6165865"/>
    <dbReference type="KEGG" id="tne:Tneu_1257"/>
    <dbReference type="eggNOG" id="arCOG04091">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098428_1_1_2"/>
    <dbReference type="OrthoDB" id="5670at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1370.30:FF:000001">
        <property type="entry name" value="40S ribosomal protein S15a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1490.10:FF:000002">
        <property type="entry name" value="40S ribosomal protein S15a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01302_A">
        <property type="entry name" value="Ribosomal_uS8_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000630">
        <property type="entry name" value="Ribosomal_uS8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047863">
        <property type="entry name" value="Ribosomal_uS8_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035987">
        <property type="entry name" value="Ribosomal_uS8_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003115">
        <property type="entry name" value="PRK04034.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11758">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S15A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00410">
        <property type="entry name" value="Ribosomal_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56047">
        <property type="entry name" value="Ribosomal protein S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00053">
        <property type="entry name" value="RIBOSOMAL_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000140626" description="Small ribosomal subunit protein uS8">
        <location>
            <begin position="1"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="130" mass="14829" checksum="7B5B60CBC09D5D17" modified="2008-05-20" version="1">MVMLDLLSNALIQIKNAEAMGKRQVAIWPVNKLIYYTLRVLQRHGYVGEVEYIDDGRGGKYVVQLLGKINDIGPIKPRYPVKYREIVQWEQKFLPARQIGILVISTNQGVMSHVEAKEKKIGGVLLAYVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8W2</accession>
    <name>B1Y8W2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Lysine exporter protein (LYSE/YGGA)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1264</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350610.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8W2"/>
    <dbReference type="STRING" id="444157.Tneu_1264"/>
    <dbReference type="GeneID" id="6165889"/>
    <dbReference type="KEGG" id="tne:Tneu_1264"/>
    <dbReference type="eggNOG" id="arCOG01947">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_104651_0_0_2"/>
    <dbReference type="OrthoDB" id="121309at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38825">
        <property type="entry name" value="LYSINE EXPORTER PROTEIN (LYSE/YGGA)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38825:SF1">
        <property type="entry name" value="TRANSPORTER, LYSE FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="40"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="72"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="145"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="180"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="204" mass="21742" checksum="0F5D7DFBC4C13646" modified="2008-05-20" version="1">MLNLILAILLITPSGAFSPGPLTASAVALGAARGWRAGLRVAAGHMAFELPYVAALAYAFSRLNVEAYKVPLAAAAFLFILYFAFLLLRDAWGIARGRPPSLPASRFASPLAAGVALTALNPYFLLWWITVAGPIVAELAAQPPYVFAAVYAAHVWMDYLWLALMASLGNAASRLLSAKGYAVFLAALAAMLLYFGVELLRKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8X3</accession>
    <name>B1Y8X3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP10</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1275</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8X3"/>
    <dbReference type="KEGG" id="tne:Tneu_1275"/>
    <dbReference type="eggNOG" id="arCOG00746">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_181231_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="55" mass="6124" checksum="8F80B1EA3E9BB454" modified="2008-05-20" version="1">MCVAFVVAVVHVLGVHAYSFLRYGVDPHDDVETAVKKLEAKAPHLARFLREVATF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y923</accession>
    <name>B1Y923_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1326</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y923"/>
    <dbReference type="STRING" id="444157.Tneu_1326"/>
    <dbReference type="KEGG" id="tne:Tneu_1326"/>
    <dbReference type="eggNOG" id="arCOG07035">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1149846_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="246" mass="28626" checksum="A4F8D8125C7C53C3" modified="2008-05-20" version="1">MAMRRSASGLEERLVKLLFIKHHDVDTTLRNLSRLLNAPYSTVRDVVYRLEAEGVVKAIRLGREHLIKLKDLSKTLELGYLTEDFVAENFGHVTPLLARKDGVYLSDELYITLPFRTKRHEAFTRLIELDLKARENMDPHLARLGEWPRLSLLFYRVVLVPEDENRLQWIRGVGLESLGYYEPAYGFFTFLLYVLKKMTALSWEEAYCKATQLIKEYVRETRSGNSIIEKIIDNIIENMKGICVES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y927</accession>
    <name>B1Y927_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcription factor TFIIB cyclin-related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1330</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TFIIB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350675.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y927"/>
    <dbReference type="STRING" id="444157.Tneu_1330"/>
    <dbReference type="GeneID" id="6165210"/>
    <dbReference type="KEGG" id="tne:Tneu_1330"/>
    <dbReference type="eggNOG" id="arCOG05559">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1656936_0_0_2"/>
    <dbReference type="OrthoDB" id="27163at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017025">
        <property type="term" value="F:TBP-class protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.25.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.10">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036915">
        <property type="entry name" value="Cyclin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023486">
        <property type="entry name" value="TFIIB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013150">
        <property type="entry name" value="TFIIB_cyclin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013137">
        <property type="entry name" value="Znf_TFIIB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00382">
        <property type="entry name" value="TFIIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08271">
        <property type="entry name" value="Zn_Ribbon_TF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47954">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57783">
        <property type="entry name" value="Zinc beta-ribbon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00782">
        <property type="entry name" value="TFIIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51134">
        <property type="entry name" value="ZF_TFIIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <keyword evidence="4" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="TFIIB-type" evidence="5">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="155" mass="17561" checksum="385EA200A11BC346" modified="2008-05-20" version="1">MICPYCSSDKIVLRDGEYVCTECGTVVGYEVVPPRVKLATPVIKSRRIIALLEEEDKQTVKMKYSDMVKFYISKIARELGVAGIEQEAMRLFSVLDKRAYQGKSPRAVAAAVVYLATERARYHVHKRDIAALVNISKFTVRDTVSRLRRYVPATD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y939</accession>
    <name>B1Y939_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ASCH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1342</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350687.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y939"/>
    <dbReference type="STRING" id="444157.Tneu_1342"/>
    <dbReference type="GeneID" id="6165296"/>
    <dbReference type="KEGG" id="tne:Tneu_1342"/>
    <dbReference type="eggNOG" id="arCOG00398">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117042_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd06552">
        <property type="entry name" value="ASCH_yqfb_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.30">
        <property type="entry name" value="Hypothetical protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007374">
        <property type="entry name" value="ASCH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42250">
        <property type="entry name" value="ASCH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42250:SF1">
        <property type="entry name" value="ASCH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04266">
        <property type="entry name" value="ASCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01022">
        <property type="entry name" value="ASCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="PUA domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ASCH" evidence="1">
        <location>
            <begin position="5"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="189" mass="21626" checksum="F5F2D0FBBD0503DC" modified="2008-05-20" version="1">MIRHLMLSSRYVKMLLEGRKRSTVRPGVLRVSDRLYIHSRGRIVAVAEVSEVVYKRVADLTEEDALVDGFRSREELLRFLKRRYPGIRETSTVTIIRFREVKKVDMPEDSFYGGLSPVEIAAMALNRLKLDRREERILKAVVEAGSLRKASLRLFGTVEKRGIIRRVLRRAASRLFEELGGRDAEGAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y942</accession>
    <name>B1Y942_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 17">Riboflavin kinase</fullName>
            <shortName evidence="17">RFK</shortName>
            <ecNumber evidence="4 17">2.7.1.161</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14 17">CTP-dependent riboflavin kinase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="15 17">CTP:riboflavin 5'-phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13 17">Flavokinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="primary">ribK</name>
        <name evidence="19" type="ordered locus">Tneu_1345</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="19" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 17">Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="16 17">
            <text>riboflavin + CTP = CDP + FMN + H(+)</text>
            <dbReference type="Rhea" id="RHEA:25021"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:57986"/>
            <dbReference type="ChEBI" id="CHEBI:58069"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="EC" id="2.7.1.161"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="17">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="17">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 17">Cofactor biosynthesis; FMN biosynthesis; FMN from riboflavin (CTP route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 17">Belongs to the archaeal riboflavin kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.161" evidence="4 17"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350690.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y942"/>
    <dbReference type="STRING" id="444157.Tneu_1345"/>
    <dbReference type="GeneID" id="6165200"/>
    <dbReference type="KEGG" id="tne:Tneu_1345"/>
    <dbReference type="eggNOG" id="arCOG01904">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088476_0_0_2"/>
    <dbReference type="OrthoDB" id="30955at2157"/>
    <dbReference type="UniPathway" id="UPA00276">
        <property type="reaction ID" value="UER00929"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008531">
        <property type="term" value="F:riboflavin kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009398">
        <property type="term" value="P:FMN biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.30">
        <property type="entry name" value="Riboflavin kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01285">
        <property type="entry name" value="Riboflavin_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039063">
        <property type="entry name" value="RibK_CTP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023470">
        <property type="entry name" value="Riboflavin_kinase_archaeal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023602">
        <property type="entry name" value="Riboflavin_kinase_CTP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023465">
        <property type="entry name" value="Riboflavin_kinase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40706">
        <property type="entry name" value="RIBOFLAVIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40706:SF1">
        <property type="entry name" value="RIBOFLAVIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01982">
        <property type="entry name" value="CTP-dep_RFKase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82114">
        <property type="entry name" value="Riboflavin kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 17" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7 17" id="KW-0288">FMN</keyword>
    <keyword evidence="11 17" id="KW-0418">Kinase</keyword>
    <keyword evidence="12 17" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9 17" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 17" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 17" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Riboflavin kinase" evidence="18">
        <location>
            <begin position="88"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <begin position="91"/>
            <end position="96"/>
        </location>
        <ligand>
            <name>CDP</name>
            <dbReference type="ChEBI" id="CHEBI:58069"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <begin position="190"/>
            <end position="193"/>
        </location>
        <ligand>
            <name>CDP</name>
            <dbReference type="ChEBI" id="CHEBI:58069"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00030544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00033116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00047857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF01982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="ACB40271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="211" mass="23481" checksum="73BE9824DE277E31" modified="2008-05-20" version="1">MECVDRRLVGDLIAVSSVEGLPVSEAARRLCLTRQGLYKLLRHLREGGYVEEGPVVKLSQRGKDLLSSVLRDLLIYFNIASLKLLGQVVSGLGEGAFYMSLEGYRRAVERLLGFTPYPGTLNLKLDPKSMAYRRYLDSLPGVHIPGFSDGVRTYGAVKAFRARIRDIEGAVVMPERTHHPTDVVEVIAPVKLREALGLRDGDKVEIEIYLD</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-09-22" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y963</accession>
    <name>SYP_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Proline--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.15</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Prolyl-tRNA synthetase</fullName>
            <shortName evidence="1">ProRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">proS</name>
        <name type="ordered locus">Tneu_1366</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>tRNA(Pro) + L-proline + ATP = L-prolyl-tRNA(Pro) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:14305"/>
            <dbReference type="Rhea" id="RHEA-COMP:9700"/>
            <dbReference type="Rhea" id="RHEA-COMP:9702"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78532"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.15"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">Consists of three domains: the N-terminal catalytic domain, the anticodon-binding domain and the C-terminal extension.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 3 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.15" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350711.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y963"/>
    <dbReference type="SMR" id="B1Y963"/>
    <dbReference type="STRING" id="444157.Tneu_1366"/>
    <dbReference type="GeneID" id="6164516"/>
    <dbReference type="KEGG" id="tne:Tneu_1366"/>
    <dbReference type="eggNOG" id="arCOG00402">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001882_4_2_2"/>
    <dbReference type="OrthoDB" id="7375at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017101">
        <property type="term" value="C:aminoacyl-tRNA synthetase multienzyme complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004827">
        <property type="term" value="F:proline-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006433">
        <property type="term" value="P:prolyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00862">
        <property type="entry name" value="ProRS_anticodon_zinc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.800:FF:000005">
        <property type="entry name" value="bifunctional glutamate/proline--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.930.10:FF:000037">
        <property type="entry name" value="Proline--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="entry name" value="Anticodon-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.30">
        <property type="entry name" value="C-terminal domain of ProRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01571">
        <property type="entry name" value="Pro_tRNA_synth_type3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002316">
        <property type="entry name" value="Pro-tRNA-ligase_IIa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004499">
        <property type="entry name" value="Pro-tRNA-ligase_IIa_arc-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016061">
        <property type="entry name" value="Pro-tRNA_ligase_II_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017449">
        <property type="entry name" value="Pro-tRNA_synth_II"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00408">
        <property type="entry name" value="proS_fam_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43382:SF2">
        <property type="entry name" value="BIFUNCTIONAL GLUTAMATE_PROLINE--TRNA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43382">
        <property type="entry name" value="PROLYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09180">
        <property type="entry name" value="ProRS-C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01046">
        <property type="entry name" value="TRNASYNTHPRO"/>
    </dbReference>
    <dbReference type="SMART" id="SM00946">
        <property type="entry name" value="ProRS-C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64586">
        <property type="entry name" value="C-terminal domain of ProRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52954">
        <property type="entry name" value="Class II aaRS ABD-related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000215581" description="Proline--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="487"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01571"/>
        </source>
    </evidence>
    <sequence length="487" mass="56465" checksum="C181341BBA32F10F" modified="2008-05-20" version="1">MELLRSARPHPKEKLKNVIEWFHWLLREAELYDVRYPVKGAYVWRPYGMKLRRNVEELIRRVHDETGHEEVLFPVFIPYEFFGKESQHIRGFEKEVFWVSKGGEGGERLVLRPTSETAIMPMVKLWIQDYKDLPLRLYQIVSVFRAETKMTHPMIRLREISMFKEAHTVHVDREDAERQVREAVEIYKRIFDEMCLAYMINKRPDWDKFAGAEYTIAFDTVLPDGRTLQIGTAHYLGTNFTRVFEVTYLDADGTRKLAHTTSYGISERSIAAMLITHGDDGGTTLPPKLAPIQIAVVPIYYSDEEMPLVMKFVEEVVAALKGAGLRLHVDDRRDKTPGWKFYYWELKGVPLRLEVGKRDVEKRQVVVTRRDTLEKYAVALGELVDAVRELMKAVEDNLRRRAWEELRSKIVKVQSLEEAKKAIKEGKVVEVPWSGDNQCGMKIQELLGADALGIPMDSEASIGGYDARDLACGERRAELWLRLSERY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y984</accession>
    <name>B1Y984_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Exosome subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1387</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350732.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y984"/>
    <dbReference type="STRING" id="444157.Tneu_1387"/>
    <dbReference type="GeneID" id="6164837"/>
    <dbReference type="KEGG" id="tne:Tneu_1387"/>
    <dbReference type="eggNOG" id="arCOG01042">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_131306_1_0_2"/>
    <dbReference type="OrthoDB" id="10874at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002739">
        <property type="entry name" value="PAB1135-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022803">
        <property type="entry name" value="Ribosomal_uL5_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38816:SF1">
        <property type="entry name" value="EXOSOME SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38816">
        <property type="entry name" value="EXOSOME SUBUNIT, DUF54 FAMILY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01877">
        <property type="entry name" value="RNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55282">
        <property type="entry name" value="RL5-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="146" mass="16332" checksum="230775738484D2E7" modified="2008-05-20" version="1">MGSNDREANCRPISLFYARVYVHATEDPDKVLAALKNVAEGPYVARSAKGHHGNPIQIVELKLHDCEALEAVKSLVARLDDVEFTLLLSGVEERRVYVKLDKQQAYRGVLRISHGDDVIYVEARGRGIAVDDMRSFLLSLRKALKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y993</accession>
    <name>B1Y993_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Anhydromevalonate phosphate decarboxylase</fullName>
            <ecNumber evidence="6">4.1.1.126</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1397</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the conversion of trans-anhydromevalonate 5-phosphate (tAHMP) into isopentenyl phosphate. Involved in the archaeal mevalonate (MVA) pathway, which provides fundamental precursors for isoprenoid biosynthesis, such as isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>(2E)-3-methyl-5-phosphooxypent-2-enoate + H(+) = isopentenyl phosphate + CO2</text>
            <dbReference type="Rhea" id="RHEA:78971"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:65078"/>
            <dbReference type="ChEBI" id="CHEBI:229665"/>
            <dbReference type="EC" id="4.1.1.126"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="4">
            <dbReference type="Rhea" id="RHEA:78972"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>prenylated FMN</name>
            <dbReference type="ChEBI" id="CHEBI:87746"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via mevalonate pathway.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the UbiD family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.126" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350741.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y993"/>
    <dbReference type="STRING" id="444157.Tneu_1397"/>
    <dbReference type="GeneID" id="6165056"/>
    <dbReference type="KEGG" id="tne:Tneu_1397"/>
    <dbReference type="eggNOG" id="arCOG01671">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023348_5_1_2"/>
    <dbReference type="OrthoDB" id="8480at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1670.10:FF:000003">
        <property type="entry name" value="Phenolic acid decarboxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1670.10">
        <property type="entry name" value="UbiD C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002830">
        <property type="entry name" value="UbiD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049381">
        <property type="entry name" value="UbiD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048304">
        <property type="entry name" value="UbiD_Rift_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00148">
        <property type="entry name" value="UbiD family decarboxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30108">
        <property type="entry name" value="3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30108:SF21">
        <property type="entry name" value="4-HYDROXYBENZOATE DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01977">
        <property type="entry name" value="UbiD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20696">
        <property type="entry name" value="UbiD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50475">
        <property type="entry name" value="FMN-binding split barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143968">
        <property type="entry name" value="UbiD C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3-octaprenyl-4-hydroxybenzoate carboxy-lyase-like Rift-related" evidence="9">
        <location>
            <begin position="101"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="3-octaprenyl-4-hydroxybenzoate carboxy-lyase-like C-terminal" evidence="10">
        <location>
            <begin position="284"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00049054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00049583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00049727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00049754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF20696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="424" mass="46761" checksum="C00EAC94BCC1DFF0" modified="2008-05-20" version="1">MSLADVVRKLSNVQVYGPPYGEFTVARILKESEGRWTPVFERVGEGFTGVGNIVDTREKLYSYLGVKSDEEAYTKLLNAEENPANLETASTWRDMYREVESLYDLPMVRYYEREARPYITSGVVVGVGQSGVMNASIHRFSPIGARRAVVRLVPRHLYQIYRSAVEKGVEVPVAVAWGVHPLVLLAAASSPSFGVFELGVAARLMGGLKVVELENGAVAPFMASVIVEGYLTRDMAEEGPFVDIVGVYDRVRLQPVVRVERIYVLREGAYVHYLLPAGLEHMLLMGFEKEARIWRAVRSVAPRVRKIRLTRGGFGWLVAVISLEKSVEGDAKNALLAAFAAHPSLKIAIAVDSDVDPEDPVAVEWAVATRLRADRGLFVVPYVRGSTLDPVALNEEGLTHKVGIDATRPLDADPSLFERARIPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9A4</accession>
    <name>B1Y9A4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1408</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350752.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9A4"/>
    <dbReference type="STRING" id="444157.Tneu_1408"/>
    <dbReference type="GeneID" id="6166061"/>
    <dbReference type="KEGG" id="tne:Tneu_1408"/>
    <dbReference type="eggNOG" id="arCOG05575">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_309434_0_0_2"/>
    <dbReference type="OrthoDB" id="27891at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="730"/>
            <end position="778"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="950" mass="108384" checksum="5D7204BC03A2677D" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9C6</accession>
    <name>B1Y9C6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Nicotinamide-nucleotide adenylyltransferase</fullName>
            <ecNumber evidence="4">2.7.7.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">NAD(+) diphosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">NAD(+) pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">NMN adenylyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1430</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>beta-nicotinamide D-ribonucleotide + ATP + H(+) = diphosphate + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:21360"/>
            <dbReference type="ChEBI" id="CHEBI:14649"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="EC" id="2.7.7.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from nicotinamide D-ribonucleotide: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the archaeal NMN adenylyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.1" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350774.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9C6"/>
    <dbReference type="STRING" id="444157.Tneu_1430"/>
    <dbReference type="GeneID" id="6164595"/>
    <dbReference type="KEGG" id="tne:Tneu_1430"/>
    <dbReference type="eggNOG" id="arCOG00972">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108783_0_0_2"/>
    <dbReference type="OrthoDB" id="264480at2157"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00600"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000309">
        <property type="term" value="F:nicotinamide-nucleotide adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD+ biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00243">
        <property type="entry name" value="NMN_adenylyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006418">
        <property type="entry name" value="NMN_Atrans_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002243">
        <property type="entry name" value="PRK01153.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21342:SF0">
        <property type="entry name" value="BIFUNCTIONAL NMN ADENYLYLTRANSFERASE_NUDIX HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21342">
        <property type="entry name" value="PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 4 6" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cytidyltransferase-like" evidence="5">
        <location>
            <begin position="4"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="171" mass="19591" checksum="77D714EA5C52C2D7" modified="2008-05-20" version="1">MRALLVGRFQPLHWGHVKAVEWLLSQHDEVVIAIGSADKAFTPDNPFTPGERIEMFRRHFGPDRRLLFCTVPDTNGPSSIWGAYLRHWCPPHHVVYSNNPWVAISLRHWGVEVRGHPHFGDYSATAVRQLMAKGDDSWRALVPPAVAQYIDEIGGVERVRLLHDNVYKWGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="92" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9E4</accession>
    <name>B1Y9E4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1448</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350792.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9E4"/>
    <dbReference type="STRING" id="444157.Tneu_1448"/>
    <dbReference type="GeneID" id="6166055"/>
    <dbReference type="KEGG" id="tne:Tneu_1448"/>
    <dbReference type="eggNOG" id="arCOG00922">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_2"/>
    <dbReference type="OrthoDB" id="44250at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098796">
        <property type="term" value="C:membrane protein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000032">
        <property type="entry name" value="Export ABC transporter ATP-binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015854">
        <property type="entry name" value="ABC_transpr_LolD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24220:SF86">
        <property type="entry name" value="ABC TRANSPORTER ABCH.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24220">
        <property type="entry name" value="IMPORT ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="3"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="254" mass="27536" checksum="60DFA59F041BE544" modified="2008-05-20" version="1">MAVELKHVTKVYGSGGVKTVALDGVSLSVAQGEAVVLMGPSGSGKTTLLNIIATLDRPTSGEVYVLGVDVVKMSEGKLERFRLRNIGYLFQSYNLVPYLTAEQNVALPLVTLGVKKELAMLKARLLLELVGLEKAAALYPHQMSGGMQQRAAVARALAANPPILILDEPTSNVDPDNASQVLGLIHVVNRLFKSTVFIATHDPEVARIATRLVYMRGGRLYETAEPPRRELKVDVERAAAVYEKLKHIDELVGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9G9</accession>
    <name>B1Y9G9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CutA1 divalent ion tolerance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1473</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CutA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350817.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9G9"/>
    <dbReference type="STRING" id="444157.Tneu_1473"/>
    <dbReference type="GeneID" id="6165800"/>
    <dbReference type="KEGG" id="tne:Tneu_1473"/>
    <dbReference type="eggNOG" id="arCOG04231">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098807_3_1_2"/>
    <dbReference type="OrthoDB" id="8015at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010038">
        <property type="term" value="P:response to metal ion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053426">
        <property type="entry name" value="CutA_tolerance"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004323">
        <property type="entry name" value="Ion_tolerance_CutA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041095">
        <property type="entry name" value="dival_cat_tol_CutA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23419">
        <property type="entry name" value="DIVALENT CATION TOLERANCE CUTA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23419:SF8">
        <property type="entry name" value="FI09726P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03091">
        <property type="entry name" value="CutA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="GlnB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="103" mass="11736" checksum="7494E33B8C8DECD3" modified="2008-05-20" version="1">MYITVFITAPDRDSGRKIARHLLERRLAACVNMTPVSSMYWWEGKIEEADEVLLVVKTTTDKLDQLVKEAKAVHPYQVPEVIAVPVVGGLAEYLDWVRRETHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="36" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9I5</accession>
    <name>B1Y9I5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1490</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9I5"/>
    <dbReference type="STRING" id="444157.Tneu_1490"/>
    <dbReference type="KEGG" id="tne:Tneu_1490"/>
    <dbReference type="HOGENOM" id="CLU_2152712_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="111" mass="12597" checksum="329D65E61364ACDB" modified="2008-05-20" version="1">MRIGNHFVEIRNTYPLSMVIPVVLEIGGVKRTYLLTAMMREGHFYADEKTEAVISHPEHGTTRIRFVVPGLYRFGHVPHESSYRLSRCRQADSGAIYNPTDSNGLDKHIGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9I8</accession>
    <name>B1Y9I8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glycine transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1493</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350836.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9I8"/>
    <dbReference type="STRING" id="444157.Tneu_1493"/>
    <dbReference type="GeneID" id="6165441"/>
    <dbReference type="KEGG" id="tne:Tneu_1493"/>
    <dbReference type="eggNOG" id="arCOG04641">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064906_2_1_2"/>
    <dbReference type="OrthoDB" id="116318at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005115">
        <property type="entry name" value="Gly_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30506">
        <property type="entry name" value="INNER MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30506:SF3">
        <property type="entry name" value="UPF0126 INNER MEMBRANE PROTEIN YADS-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03458">
        <property type="entry name" value="Gly_transporter"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="33"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="63"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="92"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="125"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="158"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="Glycine transporter" evidence="7">
        <location>
            <begin position="9"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="Glycine transporter" evidence="7">
        <location>
            <begin position="96"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="213" mass="22192" checksum="1F488FA163C1ECCD" modified="2008-05-20" version="1">MYAEVIVEVLNYVGIVAFAVSGALKAGEKNMDLLGFITLGFSTALAGGIIRDVLLGRVPPVNIVYLPYPATAILASVATFLLYPHVRRHKDVVLYPDALGLGAFAAIGADVTASYCSHHGAASCWLLVVMLSSITAAGGGVVRDILAGEIPLILRREVYASAAAAGGVIYLATLPLGREAAMLITISAVTAIRIAALWKGWELPKVVSQPGAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9K5</accession>
    <name>B1Y9K5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">FAD-dependent pyridine nucleotide-disulphide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1510</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350853.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9K5"/>
    <dbReference type="STRING" id="444157.Tneu_1510"/>
    <dbReference type="GeneID" id="6165742"/>
    <dbReference type="KEGG" id="tne:Tneu_1510"/>
    <dbReference type="eggNOG" id="arCOG01069">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003291_1_3_2"/>
    <dbReference type="OrthoDB" id="27922at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050260">
        <property type="entry name" value="FAD-bd_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43429:SF1">
        <property type="entry name" value="NAD(P)H SULFUR OXIDOREDUCTASE (COA-DEPENDENT)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43429">
        <property type="entry name" value="PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00368">
        <property type="entry name" value="FADPNR"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00411">
        <property type="entry name" value="PNDRDTASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="FAD/NAD-linked reductases, dimerisation (C-terminal) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD/NAD(P)-binding" evidence="8">
        <location>
            <begin position="3"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="domain" description="Pyridine nucleotide-disulphide oxidoreductase dimerisation" evidence="7">
        <location>
            <begin position="327"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009130"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="448" mass="48023" checksum="64A06FD83E7F9241" modified="2008-05-20" version="1">MVRVVIVGGGAAGASAAARARRLDPNAEVVLIERGSMITHAPCGMPYAIGGIVKSHEDLMTYRPEEFEKERNIRVLTRAAVLDVDVDKRMVAVQRGSSVEKIQWDKLVIATGAKPLVPKIPGVDLKGVLTMRHPDEVPEIKGHLEKAKTVAVVGGGYIGVEMAEVLLEMGKKVLLFEMADQLLPATLDPDTAAIVAEEMKSRGVELHLGEKVVELAGTGHVSKVVTEKGEYNVDEVILATGVKPDVDLALKAGAKLGETGAVYVNEYMETTVPDVYAAGDVVEKTHRLTGRRVWIPLAPTANKEGQVAGGNAVRGRVLKFPGVVGTAVTKFYNLYIARTGLSEREASQLGLKTQSALIKARTKAHYMPGAETVHMKLIAEESTGRILGAQVLGRSQIVAAYVDIVAVAAERGYTVSDMFFADIGYMPDTAPVWHPLIVAARVLSRGKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="103" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9L1</accession>
    <name>B1Y9L1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">GMP synthase [glutamine-hydrolyzing]</fullName>
            <ecNumber evidence="10">6.3.5.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">GMP synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Glutamine amidotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">guaA</name>
        <name evidence="13" type="ordered locus">Tneu_1516</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 10">Catalyzes the synthesis of GMP from XMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>XMP + L-glutamine + ATP + H2O = GMP + L-glutamate + AMP + diphosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:11680"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.5.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Purine metabolism; GMP biosynthesis; GMP from XMP (L-Gln route): step 1/1.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.2" evidence="10"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350859.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9L1"/>
    <dbReference type="STRING" id="444157.Tneu_1516"/>
    <dbReference type="MEROPS" id="C26.957"/>
    <dbReference type="GeneID" id="6166031"/>
    <dbReference type="KEGG" id="tne:Tneu_1516"/>
    <dbReference type="eggNOG" id="arCOG00085">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014340_0_5_2"/>
    <dbReference type="OrthoDB" id="33844at2157"/>
    <dbReference type="UniPathway" id="UPA00189">
        <property type="reaction ID" value="UER00296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003921">
        <property type="term" value="F:GMP synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01742">
        <property type="entry name" value="GATase1_GMP_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01997">
        <property type="entry name" value="GMP_synthase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.300.10:FF:000002">
        <property type="entry name" value="GMP synthase [glutamine-hydrolyzing]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.880:FF:000001">
        <property type="entry name" value="GMP synthase [glutamine-hydrolyzing]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00344">
        <property type="entry name" value="GMP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001674">
        <property type="entry name" value="GMP_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004739">
        <property type="entry name" value="GMP_synth_GATase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022955">
        <property type="entry name" value="GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025777">
        <property type="entry name" value="GMPS_ATP_PPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00884">
        <property type="entry name" value="guaA_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00888">
        <property type="entry name" value="guaA_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF000848">
        <property type="entry name" value="PRK00074.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11922:SF2">
        <property type="entry name" value="GMP SYNTHASE [GLUTAMINE-HYDROLYZING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11922">
        <property type="entry name" value="GMP SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00958">
        <property type="entry name" value="GMP_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00097">
        <property type="entry name" value="ANTSNTHASEII"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00096">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="Class I glutamine amidotransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51273">
        <property type="entry name" value="GATASE_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51553">
        <property type="entry name" value="GMPS_ATP_PPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 10" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="5 10 11" id="KW-0332">GMP biosynthesis</keyword>
    <keyword evidence="3 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 10 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 10 11" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMPS ATP-PPase" evidence="12">
        <location>
            <begin position="191"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="10">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="164"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="218"/>
            <end position="224"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00049404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00344"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB40440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="505" mass="55934" checksum="DAE1F371858D508C" modified="2008-05-20" version="1">MEKVLVVNFGGQYAHLIARRLRERAIYTEVVAPEDAVEAAKSQEVKAVVLSGGPSSVYQEGAPDVSNDLFALGKPILGICYGHQLIAKKFGGVVERGKGEYGKTLVKVLEDDVIFRGWEREEVVWMSHSDYVAKPPEGFKVLAVSENGYIAAMKKGNIYGVQFHPEVSHTPKGGLLLERFAREVARVESMWRPEDQIGRIVSQIREEVKDGDVIIGVSGGIDSTVTAILVHMAVGDRAKAVFIDHGLFREGEPERVVALLSSLGIKTHYVDARERFLARLEGVSDCEEKRRIIGETFAEVFAEAISLFPQAKYLAQGTLYPDVIESGAVKGADKIKSHHNVGGMPKWFTLKLVEPLREFYKDEVRRLAKALGLPDEVVYRHPFPGPGLAVRIIGPFTREKLDIVRKASKIVEEELGKEGLLRGVWQAFAVVGDDRWVGVKGDKRALGYVVTVRVVESEDAMTADWSRLPYEVLERISARITSEIPQVTMVTYAITTKPPSTIEPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9L8</accession>
    <name>B1Y9L8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1523</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350866.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9L8"/>
    <dbReference type="STRING" id="444157.Tneu_1523"/>
    <dbReference type="GeneID" id="6165826"/>
    <dbReference type="KEGG" id="tne:Tneu_1523"/>
    <dbReference type="eggNOG" id="arCOG09821">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2784258_0_0_2"/>
    <dbReference type="OrthoDB" id="29174at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="64" mass="7563" checksum="BDFEF74191495D62" modified="2008-05-20" version="1">MDLPEGRYKVYKTKKYTIYYVLDDVEIRGNYDRKLERGGHEFYFAGDVVVVKPLRETSQAQEAL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-02-10" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9M9</accession>
    <name>PELO_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Protein pelota homolog</fullName>
            <ecNumber evidence="1">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pelA</name>
        <name type="ordered locus">Tneu_1534</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">The N-terminal domain has the RNA-binding Sm fold. It harbors the endoribonuclease activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic release factor 1 family. Pelota subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350877.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9M9"/>
    <dbReference type="SMR" id="B1Y9M9"/>
    <dbReference type="STRING" id="444157.Tneu_1534"/>
    <dbReference type="GeneID" id="6166210"/>
    <dbReference type="KEGG" id="tne:Tneu_1534"/>
    <dbReference type="eggNOG" id="arCOG01741">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023334_0_0_2"/>
    <dbReference type="OrthoDB" id="31300at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070651">
        <property type="term" value="P:nonfunctional rRNA decay"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070966">
        <property type="term" value="P:nuclear-transcribed mRNA catabolic process, no-go decay"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070481">
        <property type="term" value="P:nuclear-transcribed mRNA catabolic process, non-stop decay"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032790">
        <property type="term" value="P:ribosome disassembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071025">
        <property type="term" value="P:RNA surveillance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.60">
        <property type="entry name" value="eRF1 domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.870">
        <property type="entry name" value="Pelota, domain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01853">
        <property type="entry name" value="PelO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042226">
        <property type="entry name" value="eFR1_2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005142">
        <property type="entry name" value="eRF1_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005140">
        <property type="entry name" value="eRF1_Pelota-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038069">
        <property type="entry name" value="Pelota/DOM34_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023521">
        <property type="entry name" value="Pelota_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058547">
        <property type="entry name" value="Pelota_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="Ribosomal_eL30-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004405">
        <property type="entry name" value="TF_pelota"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10853">
        <property type="entry name" value="PELOTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10853:SF0">
        <property type="entry name" value="PROTEIN PELOTA HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03465">
        <property type="entry name" value="eRF1_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26356">
        <property type="entry name" value="Pelota_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01194">
        <property type="entry name" value="eRF1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159065">
        <property type="entry name" value="Dom34/Pelota N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="L30e-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53137">
        <property type="entry name" value="Translational machinery components"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0255">Endonuclease</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0540">Nuclease</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000361827" description="Protein pelota homolog">
        <location>
            <begin position="1"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01853"/>
        </source>
    </evidence>
    <sequence length="330" mass="37142" checksum="84F141246F78903F" modified="2008-05-20" version="1">MKYEIDAKRRTVRVVPEREEDLYFVYLLVERGDVVRGWTVREYKPEGAKEGERVKMYLAVRVESLEYHKFRGSLRIRGPVVEVQEGVEGVKGRRHTFDVVPGREIEIEKAAEFPLDVVEEILKMAQALMPKVLLVSIDDEEAAFAYITALGVELIQVVHNASKGEESLFDGYLESVRKQVDELSRRLKPDKLVVAGPAMLVEHIARYIRGDKAPQGSGGLAGVYEFIRSGLYDELKTQMGVKAYEKLIHMAATSRESVAIGPQEVEEAASLGRVDFVLVLDSYIKESPEKAWVLLSQIYKTKGRIYIVREDTEVGAGIRAMGGIAAVLRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Q1</accession>
    <name>B1Y9Q1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349395.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Q1"/>
    <dbReference type="STRING" id="444157.Tneu_0015"/>
    <dbReference type="GeneID" id="58787320"/>
    <dbReference type="KEGG" id="tne:Tneu_0015"/>
    <dbReference type="eggNOG" id="arCOG05456">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_215625_0_0_2"/>
    <dbReference type="OrthoDB" id="27590at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="11"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="49" mass="5852" checksum="F1497723779E6FDB" modified="2008-05-20" version="1">MSMKDLNTTVKELIDKEIERAMANIKNEVKEVETLIDRKIEELRQYLKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9R1</accession>
    <name>B1Y9R1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">N-alpha-acetyltransferase</fullName>
            <ecNumber evidence="8">2.3.1.255</ecNumber>
            <ecNumber evidence="9">2.3.1.258</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="16">Amino-terminal acetyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="15">N-terminal acetyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ordered locus">Tneu_0025</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="18" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>N-terminal L-alanyl-[protein] + acetyl-CoA = N-terminal N(alpha)-acetyl-L-alanyl-[protein] + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50500"/>
            <dbReference type="Rhea" id="RHEA-COMP:12701"/>
            <dbReference type="Rhea" id="RHEA-COMP:12702"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:64718"/>
            <dbReference type="ChEBI" id="CHEBI:83683"/>
            <dbReference type="EC" id="2.3.1.255"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>N-terminal L-methionyl-L-glutamyl-[protein] + acetyl-CoA = N-terminal N(alpha)-acetyl-L-methionyl-L-glutamyl-[protein] + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50488"/>
            <dbReference type="Rhea" id="RHEA-COMP:12696"/>
            <dbReference type="Rhea" id="RHEA-COMP:12697"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:133359"/>
            <dbReference type="ChEBI" id="CHEBI:133360"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>N-terminal L-methionyl-L-leucyl-[protein] + acetyl-CoA = N-terminal N(alpha)-acetyl-L-methionyl-L-leucyl-[protein] + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50520"/>
            <dbReference type="Rhea" id="RHEA-COMP:12711"/>
            <dbReference type="Rhea" id="RHEA-COMP:12712"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:133377"/>
            <dbReference type="ChEBI" id="CHEBI:133378"/>
            <dbReference type="EC" id="2.3.1.258"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>N-terminal L-seryl-[protein] + acetyl-CoA = N-terminal N(alpha)-acetyl-L-seryl-[protein] + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:50504"/>
            <dbReference type="Rhea" id="RHEA-COMP:12703"/>
            <dbReference type="Rhea" id="RHEA-COMP:12704"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:64738"/>
            <dbReference type="ChEBI" id="CHEBI:83690"/>
            <dbReference type="EC" id="2.3.1.255"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the acetyltransferase family. ARD1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.255" evidence="8"/>
    <dbReference type="EC" id="2.3.1.258" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349405.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9R1"/>
    <dbReference type="STRING" id="444157.Tneu_0025"/>
    <dbReference type="GeneID" id="6165147"/>
    <dbReference type="KEGG" id="tne:Tneu_0025"/>
    <dbReference type="eggNOG" id="arCOG00833">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013985_23_0_2"/>
    <dbReference type="OrthoDB" id="43754at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031415">
        <property type="term" value="C:NatA complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120518">
        <property type="term" value="F:protein N-terminal-methionine acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd04301">
        <property type="entry name" value="NAT_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.630.30:FF:000200">
        <property type="entry name" value="N-alpha-acetyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006464">
        <property type="entry name" value="AcTrfase_RimI/Ard1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045047">
        <property type="entry name" value="Ard1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01575">
        <property type="entry name" value="rimI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23091">
        <property type="entry name" value="N-TERMINAL ACETYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23091:SF4">
        <property type="entry name" value="N-TERMINAL AMINO-ACID N(ALPHA)-ACETYLTRANSFERASE NATA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="Acyl-CoA N-acyltransferases (Nat)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="17">
        <location>
            <begin position="22"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00025786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00026110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00039121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00048236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00049103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00051494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00073228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00076912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00080792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="ACB38983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="176" mass="19823" checksum="F3C35ABCB917047F" modified="2008-05-20" version="1">MAVDVAVDGPQRFLGRDGKTEFVIREAQMGDLQDVVNINRRVLPENYPVWFFVEHLEQFPKAFVVAEVGGRVVGYVMSRVEYGWSNIEKGRPARKGHIVSVGVLPEARRLGIATAMLKRAMKALKTYYGASEAYLEVRVSNKPAISLYEKLGYRVVGRVPRYYSDGEDAYIMACTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9T8</accession>
    <name>B1Y9T8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">H/ACA RNA-protein complex component Gar1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1564</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350907.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9T8"/>
    <dbReference type="STRING" id="444157.Tneu_1564"/>
    <dbReference type="GeneID" id="6166249"/>
    <dbReference type="KEGG" id="tne:Tneu_1564"/>
    <dbReference type="eggNOG" id="arCOG02466">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_165884_2_1_2"/>
    <dbReference type="OrthoDB" id="60264at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.230">
        <property type="entry name" value="Probable tRNA pseudouridine synthase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038664">
        <property type="entry name" value="Gar1/Naf1_Cbf5-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="81" mass="9185" checksum="E81FA44F17658E2F" modified="2008-05-20" version="1">MKRIGTALHYSHMGNLVVRLAEVPPLYVNVYTYTMKKVGVLYDVIGNVKNPYGLIKPAARDESILGQPLYVKPQDLRKRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9U1</accession>
    <name>B1Y9U1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">GTPase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1567</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GPN-loop GTPase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9U1"/>
    <dbReference type="STRING" id="444157.Tneu_1567"/>
    <dbReference type="KEGG" id="tne:Tneu_1567"/>
    <dbReference type="eggNOG" id="arCOG01225">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037460_3_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004130">
        <property type="entry name" value="Gpn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21231:SF8">
        <property type="entry name" value="GPN-LOOP GTPASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21231">
        <property type="entry name" value="XPA-BINDING PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03029">
        <property type="entry name" value="ATP_bind_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="7">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="250" mass="27692" checksum="18E7E09FA4292228" modified="2008-05-20" version="1">MMYTVFFIGTAGSGKSTLVSALSNWLEDQGFDVGVVNLDPAAEYLPYVPDIDVRDRISARRIMKQFKLGPNASIVAAVDMMVTEAERIKEEMEVVGAPIFLIDTPGQMELFAFRQSGAYLIQRLSDVHSLVVYVADAVYMQTVDGFATTMLLALSSRIRFKKPQIVAVNKADLLSEEATVTINNWVEDPEALLESLDMPQYEKEVLRSVANMGGFVEPVFVSAKTGEGLDRLYHKLQMHYTGGEDAQLPP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9V3</accession>
    <name>RL24E_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein eL24</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L24e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl24e</name>
        <name type="ordered locus">Tneu_1579</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L14.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL24 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350922.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9V3"/>
    <dbReference type="SMR" id="B1Y9V3"/>
    <dbReference type="STRING" id="444157.Tneu_1579"/>
    <dbReference type="GeneID" id="6166094"/>
    <dbReference type="KEGG" id="tne:Tneu_1579"/>
    <dbReference type="eggNOG" id="arCOG01950">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_190191_0_0_2"/>
    <dbReference type="OrthoDB" id="55506at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00472">
        <property type="entry name" value="Ribosomal_L24e_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.170.20">
        <property type="entry name" value="Ribosomal protein L24e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00773">
        <property type="entry name" value="Ribosomal_eL24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038630">
        <property type="entry name" value="L24e/L24_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056366">
        <property type="entry name" value="Ribosomal_eL24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055345">
        <property type="entry name" value="Ribosomal_eL24-rel_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000988">
        <property type="entry name" value="Ribosomal_eL24-rel_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023442">
        <property type="entry name" value="Ribosomal_eL24_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011017">
        <property type="entry name" value="TRASH_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF034186">
        <property type="entry name" value="PRK14891.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10792">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10792:SF1">
        <property type="entry name" value="RIBOSOMAL PROTEIN L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01246">
        <property type="entry name" value="Ribosomal_L24e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00746">
        <property type="entry name" value="TRASH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01073">
        <property type="entry name" value="RIBOSOMAL_L24E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <keyword id="KW-0863">Zinc-finger</keyword>
    <feature type="chain" id="PRO_1000193989" description="Large ribosomal subunit protein eL24">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="1">
        <location>
            <begin position="6"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="6"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="32"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="58" mass="6799" checksum="665714DE58A728D3" modified="2008-05-20" version="1">MKIHKCSFCGAEIPPGYGIMYVRNDGTIQRYCSRKCFVSATKYGRNPRKLAWVRKRQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9X0</accession>
    <name>B1Y9X0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1597</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350939.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9X0"/>
    <dbReference type="STRING" id="444157.Tneu_1597"/>
    <dbReference type="GeneID" id="6164719"/>
    <dbReference type="KEGG" id="tne:Tneu_1597"/>
    <dbReference type="eggNOG" id="arCOG05664">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2217152_0_0_2"/>
    <dbReference type="OrthoDB" id="29206at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="106" mass="12018" checksum="FB451C78DF01CCDC" modified="2008-05-20" version="1">MATAELDLLLLRLGKLSPAKKAAVLYSLKDTLDEESFRHLAALLAIDLSRGESPRRWTPAEGDDVVEELFDTVEEPAETYDDPEEVVEDDEYIGKRVVERIWRSSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9X9</accession>
    <name>B1Y9X9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Thiol:disulphide interchange protein, putative</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1606</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glutaredoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9X9"/>
    <dbReference type="STRING" id="444157.Tneu_1606"/>
    <dbReference type="KEGG" id="tne:Tneu_1606"/>
    <dbReference type="eggNOG" id="arCOG02872">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1599077_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd02972">
        <property type="entry name" value="DsbA_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051470">
        <property type="entry name" value="Thiol:disulfide_interchange"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012336">
        <property type="entry name" value="Thioredoxin-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35272:SF3">
        <property type="entry name" value="THIOL:DISULFIDE INTERCHANGE PROTEIN DSBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35272">
        <property type="entry name" value="THIOL:DISULFIDE INTERCHANGE PROTEIN DSBC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13098">
        <property type="entry name" value="Thioredoxin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin-like fold" evidence="2">
        <location>
            <begin position="47"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="182" mass="20667" checksum="8D89FD3B618E94C3" modified="2008-05-20" version="1">MSPPVKCFYGLFVSIAVLFRRPRPRLTPVTRGDAVRRILELASVKVGSGERALVVFFDLRCPFCAKLFRETEEVLLEMAQRGLIIYAMCDYVVHREAEHLHRALRCISEGERLGFIREVFSGKRVETGSCPEGNLRECEKVAEEVGVYGTPTLLFYHLGKDRGYVHFGYMSPSEVMETLSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Z9</accession>
    <name>B1Y9Z9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Phosphate transport regulator</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1626</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0111 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350968.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Z9"/>
    <dbReference type="STRING" id="444157.Tneu_1626"/>
    <dbReference type="GeneID" id="6166192"/>
    <dbReference type="KEGG" id="tne:Tneu_1626"/>
    <dbReference type="eggNOG" id="arCOG02640">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105296_0_0_2"/>
    <dbReference type="OrthoDB" id="26941at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="entry name" value="Phosphate transport system protein phou homolog 2, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002727">
        <property type="entry name" value="DUF47"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018445">
        <property type="entry name" value="Put_Phosphate_transp_reg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36536">
        <property type="entry name" value="UPF0111 PROTEIN HI_1603"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36536:SF3">
        <property type="entry name" value="UPF0111 PROTEIN HI_1603"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01865">
        <property type="entry name" value="PhoU_div"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="218" mass="24878" checksum="CA9FFDDACE6B3939" modified="2008-05-20" version="1">MKRLKALFSSGLEEVRESLRSHIRLSFESLKLLQDVVATRNLDRSVVDEALRKATALEREGDEVIRELVDKVTQGAVVPTITNIILILLDSVDNVLDLIYFAIKEVKRGYHLWAKDQIYSIVSSEIKEMLDLTKSMMEYLNTMLDVEKPEELRRYARLISSLEEEIDEIKENILDKIYGLELDAVEFNHLVSLVYTADKIADSIQDAAYNLTTALASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA08</accession>
    <name>B1YA08_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">CoA-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1635</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350977.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA08"/>
    <dbReference type="STRING" id="444157.Tneu_1635"/>
    <dbReference type="GeneID" id="6165875"/>
    <dbReference type="KEGG" id="tne:Tneu_1635"/>
    <dbReference type="eggNOG" id="arCOG01340">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007415_2_3_2"/>
    <dbReference type="OrthoDB" id="18103at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043758">
        <property type="term" value="F:acetate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="entry name" value="Succinyl-CoA synthetase domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051538">
        <property type="entry name" value="Acyl-CoA_Synth/Transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043938">
        <property type="entry name" value="Ligase_CoA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032875">
        <property type="entry name" value="Succ_CoA_lig_flav_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43334">
        <property type="entry name" value="ACETATE--COA LIGASE [ADP-FORMING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43334:SF2">
        <property type="entry name" value="ACETATE--COA LIGASE [ADP-FORMING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13380">
        <property type="entry name" value="CoA_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19045">
        <property type="entry name" value="Ligase_CoA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13607">
        <property type="entry name" value="Succ_CoA_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="Succinyl-CoA synthetase domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA-binding" evidence="4">
        <location>
            <begin position="5"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="461" mass="49859" checksum="F7002D4F82BD8F5C" modified="2008-05-20" version="1">MISKLLDPQSVALVGASPKPGTVGYVILENLVTRFRGAVYPVNPKYDEVELWGRKLKFYKSVSEIDATVDVVVVATPAPTVPSIVEEAGRRGIPAAVVISSGFAEAGNQELEQRLASAARQYGVRLLGPNCIGVYNAFSNFDTLFLPLDRAGRPPPGPLALISQSGAVAAAIMDWAARRGIGLGLVVNYGNKADVTEVELIEHFAADDRIRVITIYLEGFKYRGEAAKFLNAVRKTVPKKPVVVYKAGRGRAAQRAVRSHTAAMAGTYEMYKGLFSQAGALEASSVREMFDMAKALATQPIPRGPRALVVSDSGGMAIQAVDALEALGLEVPEVPESIARELKRELLPFAAVSNPIDVTGSATDQHYKVVLDALLPTAFFDMALVITLMQVPGLTKNLAEYIIDSRRYGKPIAVVNFGGSELVQRFEEVLEDSGIPVYPTPERAAKALWALYKYGEIRRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA26</accession>
    <name>B1YA26_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">cytidine deaminase</fullName>
            <ecNumber evidence="4">3.5.4.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Cytidine aminohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Tneu_0042</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>cytidine + H2O + H(+) = uridine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:16069"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16704"/>
            <dbReference type="ChEBI" id="CHEBI:17562"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 12">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the cytidine and deoxycytidylate deaminase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.5" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349421.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA26"/>
    <dbReference type="STRING" id="444157.Tneu_0042"/>
    <dbReference type="GeneID" id="6164627"/>
    <dbReference type="KEGG" id="tne:Tneu_0042"/>
    <dbReference type="eggNOG" id="arCOG04173">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097262_4_1_2"/>
    <dbReference type="OrthoDB" id="39143at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004126">
        <property type="term" value="F:cytidine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042802">
        <property type="term" value="F:identical protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055086">
        <property type="term" value="P:nucleobase-containing small molecule metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072527">
        <property type="term" value="P:pyrimidine-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd01283">
        <property type="entry name" value="cytidine_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.140.10:FF:000008">
        <property type="entry name" value="Cytidine deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.10">
        <property type="entry name" value="Cytidine Deaminase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050202">
        <property type="entry name" value="Cyt/Deoxycyt_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006262">
        <property type="entry name" value="Cyt_deam_tetra"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01354">
        <property type="entry name" value="cyt_deam_tetra"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004064">
        <property type="entry name" value="PRK05578.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11644">
        <property type="entry name" value="CYTIDINE DEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11644:SF2">
        <property type="entry name" value="CYTIDINE DEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="Cytidine deaminase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 12" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="13">
        <location>
            <begin position="1"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="10">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="37"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00032005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00049558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR606262-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR606262-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR606262-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB39000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="131" mass="14283" checksum="EDEE87B406104FCD" modified="2008-05-20" version="1">MIERAKAALKNAYAPYSNFRVAAAVRTKSGRIYTGVNVENASYGLTICAERVAVFKAVSEGDRDIEAVVVYTDTEEPTPPCGACRQVIAEFNPDALIVMAGRSRTYTAKLSELLPNPFTPTRLPKTPRSEV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2010-08-10" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA36</accession>
    <name>PSB1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Proteasome subunit beta 1</fullName>
            <ecNumber evidence="1">3.4.25.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">20S proteasome beta subunit 1</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Proteasome core protein PsmB 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">psmB1</name>
        <name type="ordered locus">Tneu_0052</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Cleavage of peptide bonds with very broad specificity.</text>
            <dbReference type="EC" id="3.4.25.1"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="1">The formation of the proteasomal ATPase PAN-20S proteasome complex, via the docking of the C-termini of PAN into the intersubunit pockets in the alpha-rings, triggers opening of the gate for substrate entry. Interconversion between the open-gate and close-gate conformations leads to a dynamic regulation of the 20S proteasome proteolysis activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">The 20S proteasome core is composed of 14 alpha and 14 beta subunits that assemble into four stacked heptameric rings, resulting in a barrel-shaped structure. The two inner rings, each composed of seven catalytic beta subunits, are sandwiched by two outer rings, each composed of seven alpha subunits. The catalytic chamber with the active sites is on the inside of the barrel. Has a gated structure, the ends of the cylinder being occluded by the N-termini of the alpha-subunits. Is capped at one or both ends by the proteasome regulatory ATPase, PAN.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase T1B family.</text>
    </comment>
    <dbReference type="EC" id="3.4.25.1" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349431.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA36"/>
    <dbReference type="SMR" id="B1YA36"/>
    <dbReference type="STRING" id="444157.Tneu_0052"/>
    <dbReference type="MEROPS" id="T01.002"/>
    <dbReference type="GeneID" id="6164696"/>
    <dbReference type="KEGG" id="tne:Tneu_0052"/>
    <dbReference type="eggNOG" id="arCOG00970">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035750_7_2_2"/>
    <dbReference type="OrthoDB" id="6330at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019774">
        <property type="term" value="C:proteasome core complex, beta-subunit complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004298">
        <property type="term" value="F:threonine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010498">
        <property type="term" value="P:proteasomal protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.60.20.10:FF:000049">
        <property type="entry name" value="Proteasome subunit beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="entry name" value="Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02113_A">
        <property type="entry name" value="Proteasome_B_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019983">
        <property type="entry name" value="Pept_T1A_Psome_bsu_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000243">
        <property type="entry name" value="Pept_T1A_subB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016050">
        <property type="entry name" value="Proteasome_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001353">
        <property type="entry name" value="Proteasome_sua/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023333">
        <property type="entry name" value="Proteasome_suB-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32194:SF0">
        <property type="entry name" value="ATP-DEPENDENT PROTEASE SUBUNIT HSLV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32194">
        <property type="entry name" value="METALLOPROTEASE TLDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00227">
        <property type="entry name" value="Proteasome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00141">
        <property type="entry name" value="PROTEASOME"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00854">
        <property type="entry name" value="PROTEASOME_BETA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51476">
        <property type="entry name" value="PROTEASOME_BETA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0645">Protease</keyword>
    <keyword id="KW-0647">Proteasome</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0888">Threonine protease</keyword>
    <keyword id="KW-0865">Zymogen</keyword>
    <feature type="propeptide" id="PRO_0000397482" description="Removed in mature form; by autocatalysis" evidence="1">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_0000397483" description="Proteasome subunit beta 1">
        <location>
            <begin position="2"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="2"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02113"/>
        </source>
    </evidence>
    <sequence length="201" mass="22152" checksum="2D718B6FF9477CD2" modified="2008-05-20" version="1" precursor="true">MTTTVGIAVREGVVLATDKRVTAGYYIAHKQGEKIWKIDDHVAATMSGGVADLQSVLSFLTLRAREYKMEYKRPIPIRALVNYVSLILFYSRPYIYIVHSIIGGVDDEEGAVLYMADWLGTVTKERYIATGSGSPYAKGALEVGYREDMSLEDAVDLAIKAVKAAIRNDPGSGEGIDVVVITKREGFRRVFTAQQKIVLAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA53</accession>
    <name>B1YA53_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0069</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349448.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA53"/>
    <dbReference type="STRING" id="444157.Tneu_0069"/>
    <dbReference type="GeneID" id="6164854"/>
    <dbReference type="KEGG" id="tne:Tneu_0069"/>
    <dbReference type="eggNOG" id="arCOG05463">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_124258_0_0_2"/>
    <dbReference type="OrthoDB" id="31397at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="3"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="163" mass="19253" checksum="97184CD40EB8D863" modified="2008-05-20" version="1">MDVQKMLEVRKMLEEKIAKLQEELKLYTSLLELLDKAIGERSFSTAAQVAKPEAVEEVRGKGGEVYATAEVYPNYLYVKFREPVRLDGLFKRFFLDKFLQKYREEDAREARQGTLKQEEVLRYELEGGEAEATAIKIYNYRTEDRRREILRVLRWTLEKVYSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="105" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA88</accession>
    <name>B1YA88_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA helicase</fullName>
            <ecNumber evidence="2">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_0104</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the MCM family.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA88"/>
    <dbReference type="STRING" id="444157.Tneu_0104"/>
    <dbReference type="KEGG" id="tne:Tneu_0104"/>
    <dbReference type="eggNOG" id="arCOG00439">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000995_6_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042555">
        <property type="term" value="C:MCM complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017116">
        <property type="term" value="F:single-stranded DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.28.10:FF:000003">
        <property type="entry name" value="DNA helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000826">
        <property type="entry name" value="Replicative DNA helicase Mcm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1640.10">
        <property type="entry name" value="mini-chromosome maintenance (MCM) complex, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031327">
        <property type="entry name" value="MCM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001208">
        <property type="entry name" value="MCM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041562">
        <property type="entry name" value="MCM_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027925">
        <property type="entry name" value="MCM_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033762">
        <property type="entry name" value="MCM_OB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013429">
        <property type="entry name" value="Regulatory_FmdB_Zinc_ribbon"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040949">
        <property type="entry name" value="minchrom_main_MCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11630">
        <property type="entry name" value="DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11630:SF66">
        <property type="entry name" value="DNA REPLICATION LICENSING FACTOR MCM4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00493">
        <property type="entry name" value="MCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17855">
        <property type="entry name" value="MCM_lid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14551">
        <property type="entry name" value="MCM_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17207">
        <property type="entry name" value="MCM_OB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01657">
        <property type="entry name" value="MCMFAMILY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00834">
        <property type="entry name" value="CxxC_CXXC_SSSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00350">
        <property type="entry name" value="MCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50051">
        <property type="entry name" value="MCM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MCM C-terminal AAA(+) ATPase" evidence="10">
        <location>
            <begin position="281"/>
            <end position="487"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="682" mass="76443" checksum="BDD32074BD452206" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="40" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA89</accession>
    <name>B1YA89_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349484.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA89"/>
    <dbReference type="GeneID" id="6164439"/>
    <dbReference type="KEGG" id="tne:Tneu_0105"/>
    <dbReference type="eggNOG" id="arCOG12850">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2230483_0_0_2"/>
    <dbReference type="OrthoDB" id="377993at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103196">
        <property type="entry name" value="Roadblock/LC7 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="105" mass="11492" checksum="975886BE6D17E29F" modified="2008-05-20" version="1">MIEDVVGEEILAAAVLHKSGFVVKYVGLDREVWTRLSAVLNKARELASALQGDLLGIDLVMDRYRAAVRAGGSVVAAVLAKAEVDPQYLDYVAFRIVEEFEAELK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAB0</accession>
    <name>B1YAB0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Periplasmic binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0127</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349505.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAB0"/>
    <dbReference type="STRING" id="444157.Tneu_0127"/>
    <dbReference type="GeneID" id="6165768"/>
    <dbReference type="KEGG" id="tne:Tneu_0127"/>
    <dbReference type="eggNOG" id="arCOG04233">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038034_2_8_2"/>
    <dbReference type="OrthoDB" id="24039at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1980">
        <property type="entry name" value="Nitrogenase molybdenum iron protein domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050902">
        <property type="entry name" value="ABC_Transporter_SBP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30535:SF34">
        <property type="entry name" value="MOLYBDATE-BINDING PROTEIN MOLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30535">
        <property type="entry name" value="VITAMIN B12-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53807">
        <property type="entry name" value="Helical backbone' metal receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="269" mass="29561" checksum="19975103B1C87731" modified="2008-05-20" version="1">MITVGVLDGVPRRVVSLNPSVNEFLALLGVELAGRDAFSYRPAELMSVPIVGTFVDVDREALSKLRPDLAILYYPVQRHLLDAVANASKAVVAVPTPTSVDHAVAVFRFFARVFDRDEEGDRIAGIYRDLLRGAPLYDEVVAVINLGVYDLACSNSYVADALTRVGLRYVRGFPCVFKHSESPPQEALSRAHFVVYEARGKNYYEKETQFLGGKPHVVTPNDTLAHYGPSLPLDLRLVAEAVARGARWVGGTSSAVRPTLRGGWYAPYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAD0</accession>
    <name>B1YAD0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Transcription elongation factor Spt5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">spt5</name>
        <name evidence="5" type="ordered locus">Tneu_1657</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Stimulates transcription elongation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Heterodimer composed of Spt4 and Spt5. Interacts with RNA polymerase (RNAP).</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the archaeal Spt5 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350998.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAD0"/>
    <dbReference type="STRING" id="444157.Tneu_1657"/>
    <dbReference type="GeneID" id="6166252"/>
    <dbReference type="KEGG" id="tne:Tneu_1657"/>
    <dbReference type="eggNOG" id="arCOG01920">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_113589_0_0_2"/>
    <dbReference type="OrthoDB" id="371863at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006354">
        <property type="term" value="P:DNA-templated transcription elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09887">
        <property type="entry name" value="NGN_Arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.940">
        <property type="entry name" value="NusG, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00950">
        <property type="entry name" value="Spt5_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005100">
        <property type="entry name" value="NGN-domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036735">
        <property type="entry name" value="NGN_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_uL2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011590">
        <property type="entry name" value="Spt5_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00405">
        <property type="entry name" value="KOW_elon_Spt5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03439">
        <property type="entry name" value="Spt5-NGN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="Translation proteins SH3-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1 2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="NGN" evidence="4">
        <location>
            <begin position="8"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="NCBIfam" id="TIGR00405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="154" mass="16999" checksum="6D293D013F8E1FC4" modified="2008-05-20" version="1">MSQERCPVYTVSTVTRQEYNVVIVLKMRAESSKIPIYSVVVPPESFGVLFIEGESLPAVQRAVYGVKHVKGVMRGVTNVEEVMNVIKPAKPAVEIDVNDEVEIVADVLKGSRGRVTFVDREKGVVRVELLDSAFPMPLDLKISEVKLVKKSSQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAD5</accession>
    <name>B1YAD5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Translation initiation factor 6</fullName>
            <shortName evidence="3">aIF-6</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">eif6</name>
        <name evidence="4" type="ordered locus">Tneu_1662</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the eIF-6 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351003.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAD5"/>
    <dbReference type="STRING" id="444157.Tneu_1662"/>
    <dbReference type="GeneID" id="6166330"/>
    <dbReference type="KEGG" id="tne:Tneu_1662"/>
    <dbReference type="eggNOG" id="arCOG04176">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071894_1_0_2"/>
    <dbReference type="OrthoDB" id="33582at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042256">
        <property type="term" value="P:cytosolic ribosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.75.10.10">
        <property type="entry name" value="L-arginine/glycine Amidinotransferase, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00032">
        <property type="entry name" value="eIF_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002769">
        <property type="entry name" value="eIF6"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00323">
        <property type="entry name" value="eIF-6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003126">
        <property type="entry name" value="PRK04046.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10784">
        <property type="entry name" value="TRANSLATION INITIATION FACTOR 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01912">
        <property type="entry name" value="eIF-6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006413">
        <property type="entry name" value="IF-6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00654">
        <property type="entry name" value="eIF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55909">
        <property type="entry name" value="Pentein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3 4" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="2 3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="221" mass="23156" checksum="EBF1A900310222E9" modified="2008-05-20" version="1">MSFDVAPLKVFGSSSVGVFLATNNSVTFLPPDVPEKIDDVVRSTLRTSVARFSVARSPLLGIFLVLNDNGVVLPSLALEEEVRLFKSLGLNVGVVNSRYTAISNLVLANNKVAVVSPLLEAEARKVVSDVLGVEAVVDTIAGNPLVGSLAVANSRGVLVAPEATDEDLKKLAGYFNARVDVGTVNKGKSFLRGGLVVNDRGALVGDETAGPELMRITQVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAD8</accession>
    <name>B1YAD8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">HhH-GPD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1665</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351006.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAD8"/>
    <dbReference type="STRING" id="444157.Tneu_1665"/>
    <dbReference type="GeneID" id="6165309"/>
    <dbReference type="KEGG" id="tne:Tneu_1665"/>
    <dbReference type="eggNOG" id="arCOG00465">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1127125_0_0_2"/>
    <dbReference type="OrthoDB" id="19248at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="entry name" value="Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.30">
        <property type="entry name" value="Hypothetical protein, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10359">
        <property type="entry name" value="A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="DNA-glycosylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HhH-GPD" evidence="5">
        <location>
            <begin position="92"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="247" mass="27972" checksum="96522454811B07D3" modified="2008-05-20" version="1">MNSDCLRLTLYPSLTLALLDERYVKIFGVRKGVAAQDDHYISGRWYNPWRYINDAEGKTRDIVHQLVERYGGCVSISTSPGDEDLLFVVAFLTQNTDYHGNVLRWTRRLFQRSEDLRRIAQLAPSVGRSYQLQRLPQAIQDFTALGKPRARDELLKIRGVGPKVADLYLLYTGDPTSAPVDKHFMRTAPKLGLSGEAPRAELCRRYTCGRCPLSARCLRAEATRRLGRLAGWAQTISYLLDKGQLPA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAJ8</accession>
    <name>KCY_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cytidylate kinase</fullName>
            <shortName evidence="1">CK</shortName>
            <ecNumber evidence="1">2.7.4.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Cytidine monophosphate kinase</fullName>
            <shortName evidence="1">CMP kinase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">cmk</name>
        <name type="ordered locus">Tneu_1729</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>CMP + ATP = CDP + ADP</text>
            <dbReference type="Rhea" id="RHEA:11600"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58069"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.25"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>dCMP + ATP = dCDP + ADP</text>
            <dbReference type="Rhea" id="RHEA:25094"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57566"/>
            <dbReference type="ChEBI" id="CHEBI:58593"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.25"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytidylate kinase family. Type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.25" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351066.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAJ8"/>
    <dbReference type="SMR" id="B1YAJ8"/>
    <dbReference type="STRING" id="444157.Tneu_1729"/>
    <dbReference type="GeneID" id="6165088"/>
    <dbReference type="KEGG" id="tne:Tneu_1729"/>
    <dbReference type="eggNOG" id="arCOG01037">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079959_1_0_2"/>
    <dbReference type="OrthoDB" id="31096at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036430">
        <property type="term" value="F:CMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036431">
        <property type="term" value="F:dCMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006220">
        <property type="term" value="P:pyrimidine nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02020">
        <property type="entry name" value="CMPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00239">
        <property type="entry name" value="Cytidyl_kinase_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011892">
        <property type="entry name" value="Cyt_kin_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011994">
        <property type="entry name" value="Cytidylate_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02173">
        <property type="entry name" value="cyt_kin_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13189">
        <property type="entry name" value="Cytidylate_kin2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0418">Kinase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000100710" description="Cytidylate kinase">
        <location>
            <begin position="1"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="8"/>
            <end position="16"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00239"/>
        </source>
    </evidence>
    <sequence length="184" mass="20670" checksum="473ACE57440C3E9B" modified="2008-05-20" version="1">MVVVAVSGQPGSGKTTIAREVARVLKVPLVSSGTIFRELAAKMGMDLVEFHRYAETNPEIDKMIDALTAEKAKAGDVVVEGHLAAWVARPYADVCIYLKASSEVRAKRVSIRDKKSFEEALREVREREELNRKRYLSLYGIDIHNLTIFDLVLDTSYLSINDAVRISLDYICTTLEIKYSKKIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAK3</accession>
    <name>B1YAK3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2-(3-amino-3-carboxypropyl)histidine synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1734</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351071.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAK3"/>
    <dbReference type="STRING" id="444157.Tneu_1734"/>
    <dbReference type="GeneID" id="6164819"/>
    <dbReference type="KEGG" id="tne:Tneu_1734"/>
    <dbReference type="eggNOG" id="arCOG04112">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037146_0_0_2"/>
    <dbReference type="OrthoDB" id="314at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090560">
        <property type="term" value="F:2-(3-amino-3-carboxypropyl)histidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017183">
        <property type="term" value="P:protein histidyl modification to diphthamide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11860">
        <property type="entry name" value="Diphthamide synthesis DPH1/DPH2 domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016435">
        <property type="entry name" value="DPH1/DPH2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042265">
        <property type="entry name" value="DPH1/DPH2_3"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00322">
        <property type="entry name" value="diphth2_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01866">
        <property type="entry name" value="Diphthamide_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="303" mass="34150" checksum="2C29BF4FEC02A4D5" modified="2008-05-20" version="1">MEAVEVHPLAWEAGPDTLIEAPPGFKWLALEIAEKTGATASGRPVWGSCDVRTDPRYRRIFHLGHGVPPNVAHLLQRNLGGDLEKIEQDLYRLKTGNVQIYFIPVYYKPPPRLPKIEGAGKLYFPLPYRKIAEAIRRESGIPTAREPITGCWVGEPPEGPAYVVATGLFYPLTLKFFYPEAEVYQVDPFRGEVRNVEQDFARVMKLKARAHVAAPRRIAVLLTTKPGQRQDEKAEALARRGLTVVLLDEAAPEYIDDLQFDLVVNTACPRIGIDDLDRIRTPVLNFHEFIEGRLDPRTAIRLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAM8</accession>
    <name>B1YAM8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">histidinol-phosphate transaminase</fullName>
            <ecNumber evidence="4">2.6.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Tneu_0150</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>L-histidinol phosphate + 2-oxoglutarate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:23744"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57766"/>
            <dbReference type="ChEBI" id="CHEBI:57980"/>
            <dbReference type="EC" id="2.6.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 11">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 7/9.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.9" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAM8"/>
    <dbReference type="STRING" id="444157.Tneu_0150"/>
    <dbReference type="KEGG" id="tne:Tneu_0150"/>
    <dbReference type="eggNOG" id="arCOG04273">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_3_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004400">
        <property type="term" value="F:histidinol-phosphate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:L-histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00609">
        <property type="entry name" value="AAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001917">
        <property type="entry name" value="Aminotrans_II_pyridoxalP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II_large"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050106">
        <property type="entry name" value="HistidinolP_aminotransfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43643:SF6">
        <property type="entry name" value="HISTIDINOL-PHOSPHATE AMINOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43643">
        <property type="entry name" value="HISTIDINOL-PHOSPHATE AMINOTRANSFERASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00599">
        <property type="entry name" value="AA_TRANSFER_CLASS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5 13" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="9" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="8 11" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotransferase class I/classII large" evidence="12">
        <location>
            <begin position="48"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB39107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="335" mass="37354" checksum="2280373786E48DC3" modified="2008-05-20" version="1">MPEFDFAYDEPDVGYGKVRLHFNENLFLPEDYYREITPSVEPWELRYYTDPNNRRLAGRIEAFHGLPSGSVVVTAGADEGLRLAMQLAAHIDGRLAIVEPTYGMARVIARQIGIRPLVATYGEDLALDVDGLVKLGATTAYICSPNNPTGHVVREVEELAARFNGLIILDGAYAEFAGYWAPRLYEYGNVVEVRTFSKAWGLAGLRVGYVVAHKRTAERLRALSPPHPISSFSARVVENALERGRGYVERSIQEMARVREWTLPRVAFDKYHGPVNFITVKTPNAEQTAAALEREGYVVRVLGGKPLCPSCIRFTLAPLEVMERFVPALEKALKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAP2</accession>
    <name>B1YAP2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Isopentenyl phosphate kinase</fullName>
            <ecNumber evidence="2">2.7.4.26</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Tneu_0164</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>isopentenyl phosphate + ATP = isopentenyl diphosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:33963"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:65078"/>
            <dbReference type="ChEBI" id="CHEBI:128769"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.26"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the isopentenyl phosphate kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.26" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349542.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAP2"/>
    <dbReference type="STRING" id="444157.Tneu_0164"/>
    <dbReference type="GeneID" id="6164646"/>
    <dbReference type="KEGG" id="tne:Tneu_0164"/>
    <dbReference type="eggNOG" id="arCOG00860">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070213_0_0_2"/>
    <dbReference type="OrthoDB" id="15328at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102043">
        <property type="term" value="F:isopentenyl phosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04241">
        <property type="entry name" value="AAK_FomA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="entry name" value="Acetylglutamate kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024192">
        <property type="entry name" value="Fosfomycin_R_FomA-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001057">
        <property type="entry name" value="Glu/AcGlu_kinase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040647">
        <property type="entry name" value="IPPK_Arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43654">
        <property type="entry name" value="GLUTAMATE 5-KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43654:SF1">
        <property type="entry name" value="ISOPENTENYL PHOSPHATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016496">
        <property type="entry name" value="Kin_FomA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00474">
        <property type="entry name" value="GLU5KINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="Carbamate kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="6 13" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aspartate/glutamate/uridylate kinase" evidence="12">
        <location>
            <begin position="3"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="5"/>
            <end position="9"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="11">
        <location>
            <position position="14"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00049063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR016496-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR016496-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB39121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="238" mass="24884" checksum="8269B88A0B2E4E33" modified="2008-05-20" version="1">MYIVKFGGSAITDKTKPYTYLRGRISSIAPALRGVRAVLIHGAGSFAHPHVKAYGLTPLGIAYTKAALKRLTSYVIEELAEASVPAMPVEPSDVFWGGDVVRLDPIRHALDNGMYPLLHGDIVPADAGYVVVSGDDMAAALSKTLKPNAVVFLMEADGIYTAPPGTPGAVKIPVLKSAVDVDGTAGVDVTGGVRKKVEAGLAIAALGIPVYYCSIRDRKALEEVVSGGRPESCTAVEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAS0</accession>
    <name>B1YAS0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposase IS605 OrfB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0193</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349570.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAS0"/>
    <dbReference type="STRING" id="444157.Tneu_0193"/>
    <dbReference type="GeneID" id="6165458"/>
    <dbReference type="KEGG" id="tne:Tneu_0193"/>
    <dbReference type="eggNOG" id="arCOG05481">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1096741_0_0_2"/>
    <dbReference type="OrthoDB" id="24654at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010095">
        <property type="entry name" value="Cas12f1-like_TNB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07282">
        <property type="entry name" value="Cas12f1-like_TNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cas12f1-like TNB" evidence="2">
        <location>
            <begin position="154"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="243" mass="27550" checksum="DA27492D52CC270B" modified="2008-05-20" version="1">MFTYYLRCEVEKAREAIDGDYRVVELGGAVRLVDSFVALYSGDLPLCMYKSWRMTYTDPAQFGVTKAEVLLRKDGAVVRLVRPDEKVGLPELVEGSPFVVHAMDVNEGGVMYRVFRMGGYVELAGKGIAGGIKEAFHPKKGVNIVIVDLPIAPKFQHLLEEVFDLAREHYVELHTTMISDVCPLCGGRMEKRGRLVRCPTCKIQLNRDVNAVWALARNIVRRLGREQQLAELREIFRLYYPNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAV6</accession>
    <name>B1YAV6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0231</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349606.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAV6"/>
    <dbReference type="STRING" id="444157.Tneu_0231"/>
    <dbReference type="GeneID" id="6165334"/>
    <dbReference type="KEGG" id="tne:Tneu_0231"/>
    <dbReference type="eggNOG" id="arCOG08357">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2379543_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045944">
        <property type="entry name" value="DUF6364"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19891">
        <property type="entry name" value="DUF6364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="91" mass="9869" checksum="21C014C5467FDAA0" modified="2008-05-20" version="1">MKKLTLSIREDLAERAKARSRRLGSLSRVVEDFLESIDGEGLADALCRELGLDCAEPLTTPGEIVAQRPRALGPPAATLVAEMRRGRAGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAW3</accession>
    <name>B1YAW3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1745</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351082.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAW3"/>
    <dbReference type="GeneID" id="6165241"/>
    <dbReference type="KEGG" id="tne:Tneu_1745"/>
    <dbReference type="eggNOG" id="arCOG05651">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_191935_0_0_2"/>
    <dbReference type="OrthoDB" id="382366at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="63" mass="7126" checksum="C9D5E46385EBAAE7" modified="2008-05-20" version="1">MSILKRKKREDEEEDELEKILSELKEEDGEGRGLATVTIQIAGLRELVKALQELTEALKKCNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAY9</accession>
    <name>B1YAY9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1771</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351108.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAY9"/>
    <dbReference type="STRING" id="444157.Tneu_1771"/>
    <dbReference type="GeneID" id="6164774"/>
    <dbReference type="KEGG" id="tne:Tneu_1771"/>
    <dbReference type="eggNOG" id="arCOG07482">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_198717_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="42"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="44"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="73" mass="7980" checksum="8A113A4BB57EFB49" modified="2008-05-20" version="1">MRYAIGLSLNAAAFILAVLCQWPIAAAVVYIASVALLLPTAQRKRAEERPPAEAKREPTPDEIKRRPVSAPEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB44</accession>
    <name>B1YB44_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1827</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 8">Cell membrane</location>
            <topology evidence="1 8">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351163.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB44"/>
    <dbReference type="STRING" id="444157.Tneu_1827"/>
    <dbReference type="GeneID" id="6164732"/>
    <dbReference type="KEGG" id="tne:Tneu_1827"/>
    <dbReference type="eggNOG" id="arCOG00162">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016047_3_0_2"/>
    <dbReference type="OrthoDB" id="11163at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051789">
        <property type="entry name" value="Bact_Polyamine_Transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43848">
        <property type="entry name" value="PUTRESCINE TRANSPORT SYSTEM PERMEASE PROTEIN POTI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43848:SF2">
        <property type="entry name" value="PUTRESCINE TRANSPORT SYSTEM PERMEASE PROTEIN POTI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="56"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="87"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="125"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="168"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="227"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="57"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="253" mass="27484" checksum="8C37937E38F15F16" modified="2008-05-20" version="1">MRALRLYTWGLIAALYTPVAVIVALSLNDSKLPYVWGGFTVRWYLSLLQWEQAWQALLNSLLIALAVSAASTLLGLFMAYSLRGDRYVVLSQGAVVMPEVSEALAFAAALTLAKSYTGVDLFGPIGVFLAHLAYTLPTAHVLLVPYMSYVGRNVVEAARVLGASEAKTVSAVVLPIMMPAFVATFLIVFANSFDTYIKTAFTTSPGFVTAPILLWSYAARGRGDPTMYALATLMLIPSIVAATIYFRSIKRYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBC1</accession>
    <name>B1YBC1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">uroporphyrinogen-III C-methyltransferase</fullName>
            <ecNumber evidence="3">2.1.1.107</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0301</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.107" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349673.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBC1"/>
    <dbReference type="STRING" id="444157.Tneu_0301"/>
    <dbReference type="GeneID" id="6165985"/>
    <dbReference type="KEGG" id="tne:Tneu_0301"/>
    <dbReference type="eggNOG" id="arCOG00645">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011276_7_1_2"/>
    <dbReference type="OrthoDB" id="6633at2157"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046026">
        <property type="term" value="F:precorrin-4 C11-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004851">
        <property type="term" value="F:uroporphyrin-III C-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019354">
        <property type="term" value="P:siroheme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11641">
        <property type="entry name" value="Precorrin-4_C11-MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1010.10:FF:000001">
        <property type="entry name" value="Siroheme synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="entry name" value="Cobalt-precorrin-4 Transmethylase, Domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="entry name" value="Methyltransferase, Cobalt-precorrin-4 Transmethylase, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006362">
        <property type="entry name" value="Cbl_synth_CobM/CibF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006366">
        <property type="entry name" value="CobA/CysG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050161">
        <property type="entry name" value="Siro_Cobalamin_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01469">
        <property type="entry name" value="cobA_cysG_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01465">
        <property type="entry name" value="cobM_cbiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004790">
        <property type="entry name" value="PRK06136.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45790:SF4">
        <property type="entry name" value="COBALT-PRECORRIN-4 C(11)-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45790">
        <property type="entry name" value="SIROHEME SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="Tetrapyrrole methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00839">
        <property type="entry name" value="SUMT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00840">
        <property type="entry name" value="SUMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="5 9 12" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6 9 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Tetrapyrrole methylase" evidence="11">
        <location>
            <begin position="4"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="239"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="260" mass="28026" checksum="6FC5E43968C0E8C2" modified="2008-05-20" version="1">MAGKVVFVGAGPGDPELITVKGMKYLQQADVVVYAGSLVNPELLKYARRDAEVYNSASMTTEEIVDILVRKALEGKLVVRLKSGDSGIYGALWEEVLPLQAAGVPYEVVPGITAALAAAAVMGIELTIPKNVQTVVLTRASARVEMRGSLEQVARFMREQGAVAVIYTGVHVIDKVVRELAAGGLPLDTPAAVVYRATWDDQKIVRGTLADIAEKVKRERIARDSVIIVGEPVAPREIPRSSVYHPAHGHSYRPARHDKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBC8</accession>
    <name>B1YBC8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0308</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349680.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBC8"/>
    <dbReference type="STRING" id="444157.Tneu_0308"/>
    <dbReference type="GeneID" id="6164816"/>
    <dbReference type="KEGG" id="tne:Tneu_0308"/>
    <dbReference type="eggNOG" id="arCOG01910">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024619_1_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07021">
        <property type="entry name" value="Clp_protease_NfeD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.226.10">
        <property type="entry name" value="2-enoyl-CoA Hydratase, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052165">
        <property type="entry name" value="Membrane_assoc_protease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002810">
        <property type="entry name" value="NfeD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056738">
        <property type="entry name" value="NfeD1b_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056739">
        <property type="entry name" value="NfeD_membrane"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33507">
        <property type="entry name" value="INNER MEMBRANE PROTEIN YBBJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33507:SF3">
        <property type="entry name" value="INNER MEMBRANE PROTEIN YBBJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01957">
        <property type="entry name" value="NfeD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25145">
        <property type="entry name" value="NfeD1b_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24961">
        <property type="entry name" value="NfeD_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="ClpP/crotonase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141322">
        <property type="entry name" value="NfeD domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="191"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="240"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="264"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="290"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="NfeD1b N-terminal" evidence="8">
        <location>
            <begin position="21"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="NfeD integral membrane" evidence="7">
        <location>
            <begin position="198"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="NfeD-like C-terminal" evidence="6">
        <location>
            <begin position="329"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF24961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF25145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="386" mass="39395" checksum="7FE51AD83242238B" modified="2008-05-20" version="1">MRALLALVLLAAAAYAMQAVVVKLDGTIDGTAVTLVERGLEAAEARGLPLVLVIDTPGGFLLPMEKIVKLVESARVPVYAYVPDAARAASAGAFIALAAERLYMAPTAVIGAAQPRPPDPKVVNYAAAKMRALAARRWNDTRVQLAESFVTENKALTGAEAVAAGIAEPPPPIEPAAVVERDPLLRLLNALSDPALLVAMLIAGAALILYEVATSGFQGLGVIGGVAVVSALYLLGELGISWLAAALALAAAVLIIAEAHLGHGAAALAGAALGAAAVVAAYWGQPYVGLSALGATAAGLSIAAGIALAYVAWRVRRSLSRRPQSLRDVVGARGVAKTALGPGRRGVVYAAGEDWTAESVEGEVQPGEEVEVVDVEGLVLKVKKVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBE8</accession>
    <name>B1YBE8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0328</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349700.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBE8"/>
    <dbReference type="STRING" id="444157.Tneu_0328"/>
    <dbReference type="GeneID" id="6165218"/>
    <dbReference type="KEGG" id="tne:Tneu_0328"/>
    <dbReference type="eggNOG" id="arCOG00732">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_142189_2_0_2"/>
    <dbReference type="OrthoDB" id="41119at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027395">
        <property type="entry name" value="WH_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37318">
        <property type="entry name" value="BSL7504 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37318:SF1">
        <property type="entry name" value="BSL7504 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13601">
        <property type="entry name" value="HTH_34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="9"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="107" mass="12288" checksum="35B0F9E548F494BF" modified="2008-05-20" version="1">MTEFDELMRLLGTRALSSGVRLGILIALYVVDGYITFSDLQRALDLPKSTLHEHLQILAEEGYIEYRRAITERGVRAVAKITDKGRGIVRRYLDLLRRIYQKQGEPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBF2</accession>
    <name>B1YBF2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0332</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349704.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBF2"/>
    <dbReference type="STRING" id="444157.Tneu_0332"/>
    <dbReference type="GeneID" id="6164929"/>
    <dbReference type="KEGG" id="tne:Tneu_0332"/>
    <dbReference type="eggNOG" id="arCOG03167">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041527_0_0_2"/>
    <dbReference type="OrthoDB" id="371918at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041682">
        <property type="entry name" value="AAA_14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025420">
        <property type="entry name" value="DUF4143"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33295">
        <property type="entry name" value="ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33295:SF21">
        <property type="entry name" value="ATPASE, AAA SUPERFAMILY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13173">
        <property type="entry name" value="AAA_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13635">
        <property type="entry name" value="DUF4143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="34"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4143" evidence="2">
        <location>
            <begin position="210"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="413" mass="46591" checksum="CEE7876191B99C6E" modified="2008-05-20" version="1">MERVFREVVEEWLSWRPPPMVERELELPLEAGLATAVVGPRRAGKTYLLYQLAARRGGALYINFEDVRFVGLRPGDFSAFLKILAERGGFQLLLLDEVQNVPHWGRWVRSLLDRGYLVAVAGSTSKLGAREVPTELRGRYLSRLLLPFSFREYLRAVGIPASAGHAPASRGRLLGALRDYLERGGYPEAVLRPQLARELLRTYRDTVVYRDVVERHRVRDARGFEVFLSMVESSFCNVFSISSAHRRLASLGLEKSKKTLANYLKYLEEAFYVVAVPKWGPGKTPLTQPHKIYPVDPGYIPEGQIGRKMEAAVAVELLRRGAKFYYYRGRREVDFVVEGEPPLLIQVTYASAPDEVDRRELDALSEAAAAVGGRPLLITWDLEGHIARGGLRVDAVPLWRWLLGGSSWRSSTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBH5</accession>
    <name>B1YBH5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator, fis family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1862</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351196.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBH5"/>
    <dbReference type="STRING" id="444157.Tneu_1862"/>
    <dbReference type="GeneID" id="6164832"/>
    <dbReference type="KEGG" id="tne:Tneu_1862"/>
    <dbReference type="eggNOG" id="arCOG00740">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2476152_0_0_2"/>
    <dbReference type="OrthoDB" id="26501at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="87" mass="9795" checksum="DB63BDDBDF3F0A7E" modified="2008-05-20" version="1">MFLRSALRLARWLGAFTASQAAAYLGMPQEEAERRLDKLVEGGALRAVVIGGVKFYYRDPQEAAEVILESVDISALPREEREKLMRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="93" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBH9</accession>
    <name>B1YBH9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1866</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351200.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBH9"/>
    <dbReference type="STRING" id="444157.Tneu_1866"/>
    <dbReference type="GeneID" id="6164918"/>
    <dbReference type="KEGG" id="tne:Tneu_1866"/>
    <dbReference type="eggNOG" id="arCOG00922">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_2"/>
    <dbReference type="OrthoDB" id="44250at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098796">
        <property type="term" value="C:membrane protein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000032">
        <property type="entry name" value="Export ABC transporter ATP-binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015854">
        <property type="entry name" value="ABC_transpr_LolD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24220:SF86">
        <property type="entry name" value="ABC TRANSPORTER ABCH.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24220">
        <property type="entry name" value="IMPORT ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="3"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="226" mass="24904" checksum="46BF13D1C0B52093" modified="2008-05-20" version="1">MEIVVKDVVKYYGDYPALRGVSLEVPRGAFQCIIGPSGSGKSTLLHIIGGVDKPTSGEVTVAGVRLNDLGDDELAEFRNRNVGFVFQMFYLIPRMSILENVELPLILRRVPREERRRAALEALRLAGLGHIDPRKRPTQLSGGEQQRVAIARAIVARPRILLADEPTGNLDSATAKVVMDTFLELKKTLGITIVMVTHNLELLPYCDAYAKMRDGKIAEISGKQPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBK8</accession>
    <name>B1YBK8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF6884 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1895</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351229.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBK8"/>
    <dbReference type="GeneID" id="6164875"/>
    <dbReference type="KEGG" id="tne:Tneu_1895"/>
    <dbReference type="eggNOG" id="arCOG03726">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1674051_0_0_2"/>
    <dbReference type="OrthoDB" id="27098at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049251">
        <property type="entry name" value="DUF6884"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21818">
        <property type="entry name" value="DUF6884"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6884" evidence="2">
        <location>
            <begin position="7"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="153"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="172" mass="19063" checksum="22DBF9EE3116C8F4" modified="2008-05-20" version="1">MYSVVTNCTAEKLGVAAPARELYRGPSVRRIAKVVDEARAAGIPAALYIISARYGLVREDEVLEPYDETLSGRSPEEIKSWARAVGLLDAVDKLAERSTVVVVASKPYYTAVEEVVCRRGLYVLAPYRACGRWIKTGNFNKHIALRSLLMSLSDGGSPPSHEESRNLRRRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBM9</accession>
    <name>B1YBM9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP1 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1916</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351250.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBM9"/>
    <dbReference type="GeneID" id="6164926"/>
    <dbReference type="KEGG" id="tne:Tneu_1916"/>
    <dbReference type="eggNOG" id="arCOG03722">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115256_4_0_2"/>
    <dbReference type="OrthoDB" id="30877at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.330">
        <property type="entry name" value="Nucleotidyltransferases domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010268">
        <property type="entry name" value="PaREP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34237:SF1">
        <property type="entry name" value="PAREP8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34237">
        <property type="entry name" value="PAREP8-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05942">
        <property type="entry name" value="PaREP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="155" mass="17763" checksum="7B9F8703980833F3" modified="2008-05-20" version="1">MAITLSPAVAELLKRAAGDRDVEAFLADLLAGRLDPPERVELYLRLHEKYLREAEELYRGGDLVQAGEKYWGAVTALLNALAEKRGEPHYSHRDYAVLIDRLYRETKDRELVTAFAMAERLHANFYHNFLSPEGFEVHREAALKLVEKLKKLVET</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBP6</accession>
    <name>B1YBP6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Geranylgeranyl reductase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1933</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351267.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBP6"/>
    <dbReference type="STRING" id="444157.Tneu_1933"/>
    <dbReference type="GeneID" id="6164992"/>
    <dbReference type="KEGG" id="tne:Tneu_1933"/>
    <dbReference type="eggNOG" id="arCOG00570">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024648_0_1_2"/>
    <dbReference type="OrthoDB" id="46008at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050407">
        <property type="entry name" value="Geranylgeranyl_reductase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42685:SF21">
        <property type="entry name" value="DEHYDROGENASE (FLAVOPROTEIN)-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42685">
        <property type="entry name" value="GERANYLGERANYL DIPHOSPHATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="358" mass="38777" checksum="945F60B33346AE42" modified="2008-05-20" version="1">MRVAVVGAGPAGLSFASRFGDADVYEEHHEVGLPRHCTSLVGGGAARRAQLPNGVVLNQYRELLITDLQGHSIRFKLRDPVLLLDRPGLEQKLAEGVPRIHLGRKVVDIRGGYIHTADGSRRGPYDYIVVAEGAARRISRAYGHVVRLPGLQIDVRSDVGLHGITVVYNQRLSRAYFAWIVELDRGLYRVGLADLCCTVEKLNKLVKLVGGRPAGKPFGGGVLAGPPLRRLVEGRAVLVGDAAGLVKPLSGGGIALAVKSGRLAAEALAEGRPEGYEESTAALRLRLRAAFAAFRALYGWRLVDRLLRLLDGGEYVAVDYDDHVKTLAVAALLDRRSLKAGVELLRYLASNRYALHLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBQ0</accession>
    <name>B1YBQ0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peptidase M24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1937</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M24B family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351271.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBQ0"/>
    <dbReference type="STRING" id="444157.Tneu_1937"/>
    <dbReference type="GeneID" id="6164706"/>
    <dbReference type="KEGG" id="tne:Tneu_1937"/>
    <dbReference type="eggNOG" id="arCOG01000">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017266_4_2_2"/>
    <dbReference type="OrthoDB" id="1346at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="entry name" value="Creatinase/methionine aminopeptidase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050659">
        <property type="entry name" value="Peptidase_M24B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001131">
        <property type="entry name" value="Peptidase_M24B_aminopep-P_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46112">
        <property type="entry name" value="AMINOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46112:SF2">
        <property type="entry name" value="XAA-PRO AMINOPEPTIDASE P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="Creatinase/aminopeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00491">
        <property type="entry name" value="PROLINE_PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase M24" evidence="4">
        <location>
            <begin position="132"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="346" mass="37240" checksum="5EFFD7C584F459B5" modified="2008-05-20" version="1">MNNVGKLVKAFAGRYRYLILTRSPNLAYAVGMPDALGLVLDLETGHSTLYVSRLDYARASAFAEVDKVVAVASAEIPPRRPGEELVVASSLSDVLRQVSQGGAAASDNKELGVDVSAEIAELRAAKEEWEVEMMREALKIAEGAYVKLAELRLIGMRERDVAALIYKWFLEEGADGVAFDPIVASGPNGAYPHYRFGDRKIAYGDYVVVDIGAKRGVYCSDITRTLAVGQGGALRDAVYAVYEAVKAAEKVAREGAAAAEVDKAARDVIAEYGFGQYFIHSTGHGVGVEVHEPPRLYAASRDVLKRGHVVTIEPGVYIEGVGGVRIEDMVYINGGAAVLNRLPHIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBU8</accession>
    <name>B1YBU8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0384</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349752.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBU8"/>
    <dbReference type="GeneID" id="6164894"/>
    <dbReference type="KEGG" id="tne:Tneu_0384"/>
    <dbReference type="eggNOG" id="arCOG08365">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2433989_0_0_2"/>
    <dbReference type="OrthoDB" id="372701at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="90" mass="9981" checksum="C801DFDB10805F33" modified="2008-05-20" version="1">MGKWLLRILKAWVAFGALLLIFIGVLLFPFTLLLGAVSFAAGWYILLYVVFSGSEGFRRGFAIGWRCGAGDREACEEFKKLFESARGRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBY4</accession>
    <name>B1YBY4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0420</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATP-dependent AMP-binding enzyme family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349788.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBY4"/>
    <dbReference type="STRING" id="444157.Tneu_0420"/>
    <dbReference type="GeneID" id="6166066"/>
    <dbReference type="KEGG" id="tne:Tneu_0420"/>
    <dbReference type="eggNOG" id="arCOG01529">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_3_6_2"/>
    <dbReference type="OrthoDB" id="193284at2157"/>
    <dbReference type="BRENDA" id="6.2.1.40">
        <property type="organism ID" value="6328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003987">
        <property type="term" value="F:acetate-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006085">
        <property type="term" value="P:acetyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="entry name" value="N-terminal domain of ligase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032387">
        <property type="entry name" value="ACAS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_synth/lig_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001208">
        <property type="entry name" value="PRK00174.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24095">
        <property type="entry name" value="ACETYL-COENZYME A SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24095:SF232">
        <property type="entry name" value="ACETYL-COENZYME A SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16177">
        <property type="entry name" value="ACAS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acetyl-coenzyme A synthetase N-terminal" evidence="7">
        <location>
            <begin position="7"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-dependent synthetase/ligase" evidence="5">
        <location>
            <begin position="68"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding enzyme C-terminal" evidence="6">
        <location>
            <begin position="519"/>
            <end position="594"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF16177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="629" mass="71356" checksum="2068E765143385D1" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBZ4</accession>
    <name>B1YBZ4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0430</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349798.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBZ4"/>
    <dbReference type="REBASE" id="17646">
        <property type="entry name" value="TneI"/>
    </dbReference>
    <dbReference type="GeneID" id="6166149"/>
    <dbReference type="KEGG" id="tne:Tneu_0430"/>
    <dbReference type="eggNOG" id="arCOG06089">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_820437_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="357" mass="40804" checksum="EF2580595C5ED70E" modified="2008-05-20" version="1">MSSRGTGRTRASVNDCIASVEEGVGRGLLPKEFLGCEDRRGVRHVEVLCEGAVKGGDIESLGGVQEWIQWLAWSSIVLDEKDYLEAALHALRIAPRLSATDYGTARQRDLAQQWTDVIRGLLGEIAFVRWLRERFGIYAELDYGLGSISNYLPSDIKLVNGRRPNLNVSIKTTKLRGIWLDVPYAQIEHSDIFVLVRVGVTRWHFLAFLKKISVIRDKIFEMSTRLGIADGGLLEELWSEMPEFENIPAYVAGFFDKRVYGDRLKSREEIVLADGVQKKKRFIVNRFVGFWNPSTRELPKYRGKLLQMLRERYPDLPENVKIEFEGIGDFTRTLHFIVSSGALKRGRGEWERLVEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC03</accession>
    <name>B1YC03_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1942</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351276.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC03"/>
    <dbReference type="GeneID" id="6164565"/>
    <dbReference type="KEGG" id="tne:Tneu_1942"/>
    <dbReference type="eggNOG" id="arCOG05438">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1607221_0_0_2"/>
    <dbReference type="OrthoDB" id="29112at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="62"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="132"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="165" mass="17590" checksum="532AA28308C93381" modified="2008-05-20" version="1">MSRAVLYRRSEEQKQRFSLYGMLTALFHLVTLLAGGVAYASSNLPVYLSMNAAVASGHGTAVFFQSMLALLSFIVLAVSALLIFLSRATTARGEFTSSSKLIYSAIVADALALAFAAASLAPPASGIINSLYYVFIVMAAACIAMALFAVVLLRGVVSYYTPRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC28</accession>
    <name>B1YC28_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Probable transcription termination protein NusA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nusA</name>
        <name evidence="9" type="ordered locus">Tneu_1967</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Participates in transcription termination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the NusA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351301.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC28"/>
    <dbReference type="STRING" id="444157.Tneu_1967"/>
    <dbReference type="GeneID" id="6165045"/>
    <dbReference type="KEGG" id="tne:Tneu_1967"/>
    <dbReference type="eggNOG" id="arCOG01760">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_131906_0_0_2"/>
    <dbReference type="OrthoDB" id="4116at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22530">
        <property type="entry name" value="KH-II_NusA_arch_rpt1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd22531">
        <property type="entry name" value="KH-II_NusA_arch_rpt2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.300.20:FF:000024">
        <property type="entry name" value="Probable transcription termination protein NusA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.300.20:FF:000041">
        <property type="entry name" value="Probable transcription termination protein NusA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00945_A">
        <property type="entry name" value="NusA_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058582">
        <property type="entry name" value="KH_NusA_2nd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010212">
        <property type="entry name" value="NusA_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030842">
        <property type="entry name" value="TF_NusA_bacterial"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01952">
        <property type="entry name" value="nusA_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22648">
        <property type="entry name" value="TRANSCRIPTION TERMINATION FACTOR NUSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22648:SF0">
        <property type="entry name" value="TRANSCRIPTION TERMINATION_ANTITERMINATION PROTEIN NUSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26594">
        <property type="entry name" value="KH_NusA_2nd"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="Prokaryotic type KH domain (KH-domain type II)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50084">
        <property type="entry name" value="KH_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 6" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="K Homology" evidence="8">
        <location>
            <begin position="33"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="144" mass="15645" checksum="8A92F2CD8BEFA2C1" modified="2008-05-20" version="1">MSDIRLTEEEIRYATLFESITGVTPMDVVIDGDYSRIIFVVQKNQAALAVGRGGANVKMLKQIVGKDVEIVETGDTPEELIKNSLYPAKVIMVKVTKAPSGAKVAITTVAPEDKGIAIGKNGRNIARAKILAKRYFDIEKIILA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC29</accession>
    <name>B1YC29_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Small ribosomal subunit protein uS12</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rps12</name>
        <name evidence="10" type="ordered locus">Tneu_1968</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 9">With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 7 9">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the universal ribosomal protein uS12 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351302.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC29"/>
    <dbReference type="STRING" id="444157.Tneu_1968"/>
    <dbReference type="GeneID" id="6164613"/>
    <dbReference type="KEGG" id="tne:Tneu_1968"/>
    <dbReference type="eggNOG" id="arCOG04255">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115574_0_1_2"/>
    <dbReference type="OrthoDB" id="45154at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03367">
        <property type="entry name" value="Ribosomal_S23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.50.140:FF:000007">
        <property type="entry name" value="40S ribosomal protein S23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00403_A">
        <property type="entry name" value="Ribosomal_uS12_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006032">
        <property type="entry name" value="Ribosomal_uS12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022863">
        <property type="entry name" value="Ribosomal_uS12_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005680">
        <property type="entry name" value="Ribosomal_uS12_euk/arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003254">
        <property type="entry name" value="PRK04211.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00982">
        <property type="entry name" value="uS12_E_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11652">
        <property type="entry name" value="30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00164">
        <property type="entry name" value="Ribosom_S12_S23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002133">
        <property type="entry name" value="Ribosomal_S12/S23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7 9" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="147" mass="16466" checksum="6ABE9B2DE3B2B456" modified="2008-05-20" version="1">MPGKKSPYGLFAGGKLKRKRQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVVKVNGVSLWAIWRGKKQKPTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC31</accession>
    <name>B1YC31_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Large ribosomal subunit protein eL18</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpl18e</name>
        <name evidence="6" type="ordered locus">Tneu_1970</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the eukaryotic ribosomal protein eL18 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351304.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC31"/>
    <dbReference type="STRING" id="444157.Tneu_1970"/>
    <dbReference type="GeneID" id="6166056"/>
    <dbReference type="KEGG" id="tne:Tneu_1970"/>
    <dbReference type="eggNOG" id="arCOG00780">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_146465_0_0_2"/>
    <dbReference type="OrthoDB" id="11309at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.100.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00329">
        <property type="entry name" value="Ribosomal_eL18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000039">
        <property type="entry name" value="Ribosomal_eL18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022947">
        <property type="entry name" value="Ribosomal_eL18_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021131">
        <property type="entry name" value="Ribosomal_uL15/eL18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036227">
        <property type="entry name" value="Ribosomal_uL15/eL18_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001196">
        <property type="entry name" value="Ribosomal_uL15_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003079">
        <property type="entry name" value="PRK04005.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10934">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10934:SF2">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN EL18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17135">
        <property type="entry name" value="Ribosomal_L18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52080">
        <property type="entry name" value="Ribosomal proteins L15p and L18e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00475">
        <property type="entry name" value="RIBOSOMAL_L15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 6" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Large ribosomal subunit protein uL15/eL18" evidence="5">
        <location>
            <begin position="11"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF17135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="122" mass="13199" checksum="7B098A9D9011273E" modified="2008-05-20" version="1">MPPNPTGPTNRQLRMLARFLRKAAAANSARIWRVVAELIERPRRSRVVVNVGKLNRVAEDGDVVVVPGKLLGGGELRKKVTVAAVKVSPKAAQKVVEAGGELLTIPELVRRVPKGTRVKVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC41</accession>
    <name>B1YC41_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Endonuclease V</fullName>
            <ecNumber evidence="7">3.1.21.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Deoxyinosine 3'endonuclease</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Deoxyribonuclease V</fullName>
            <shortName evidence="7">DNase V</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">nfi</name>
        <name evidence="8" type="ordered locus">Tneu_1980</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>Endonucleolytic cleavage at apurinic or apyrimidinic sites to products with a 5'-phosphate.</text>
            <dbReference type="EC" id="3.1.21.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the endonuclease V family.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.7" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351314.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC41"/>
    <dbReference type="STRING" id="444157.Tneu_1980"/>
    <dbReference type="GeneID" id="6165574"/>
    <dbReference type="KEGG" id="tne:Tneu_1980"/>
    <dbReference type="eggNOG" id="arCOG00929">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047631_1_1_2"/>
    <dbReference type="OrthoDB" id="7885at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043737">
        <property type="term" value="F:deoxyribonuclease V activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016891">
        <property type="term" value="F:RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003727">
        <property type="term" value="F:single-stranded RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06559">
        <property type="entry name" value="Endonuclease_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2170.10">
        <property type="entry name" value="archaeoglobus fulgidus dsm 4304 superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00801">
        <property type="entry name" value="Endonuclease_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007581">
        <property type="entry name" value="Endonuclease-V"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28511">
        <property type="entry name" value="ENDONUCLEASE V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28511:SF1">
        <property type="entry name" value="ENDONUCLEASE V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04493">
        <property type="entry name" value="Endonuclease_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6 7 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with target DNA" evidence="7">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="231" mass="24953" checksum="446E70317B65FC1E" modified="2008-05-20" version="1">MPLNTEVARKIQELLAKRVTAAPLPSYNTVCGLDVAYSGDVAYGAAVVVDVRSLAVTEAACAATKNLVPYVPTFLAFRELTPMLRAYVKLRYQPDVVLVDGHGVAHPRRFGIASHIGVVLKRPTVGVAKSRLYGVERGDAVYDPETGEVIARVLRCGGKRYVSVGSHVTLEDAAALVQRLCIGGDVYPLRLAHDLTQRLKRVRPSSFDQWGEGRIEDDVCTVKRLGAGGGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC89</accession>
    <name>B1YC89_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">AAA ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0455</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the HerA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349822.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC89"/>
    <dbReference type="STRING" id="444157.Tneu_0455"/>
    <dbReference type="GeneID" id="6165964"/>
    <dbReference type="KEGG" id="tne:Tneu_0455"/>
    <dbReference type="eggNOG" id="arCOG00285">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_948694_0_0_2"/>
    <dbReference type="OrthoDB" id="107033at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008571">
        <property type="entry name" value="HerA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002789">
        <property type="entry name" value="HerA_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42957">
        <property type="entry name" value="HELICASE MJ1565-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42957:SF1">
        <property type="entry name" value="HELICASE MJ1565-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01935">
        <property type="entry name" value="DUF87"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase HerA central" evidence="5">
        <location>
            <begin position="35"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00048954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00048988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="295" mass="33675" checksum="A6B0EEA134204906" modified="2008-05-20" version="1">MWILAALALLALLLLTGEGVLVGLRWGVPVFLPLDRHVVVLGPTRSGKSRLAKKIVRRSGLPALILDWVGEYDLGLRVDARHLRYDLRGFDKKLLAEIIGLSLNLNEPSIYFLYRAVRNAEVKRIGDVLEALESFLVTSRAEVEMRAAIARRLEYIVEVLERGRVPLDLLLRLRRTVVIDLSRLRLYEEKVLVSLFVLALLYDRVQKEGVSRQPRKLLVVDEAQNVIKRGDVVRHLVFESAKFGLRVLLVTNEVPPDDVLVHSYIIITRPHMMYKLQTKRSALVIDNKVVEMKIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCE6</accession>
    <name>B1YCE6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl transferase group 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0516</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCE6"/>
    <dbReference type="STRING" id="444157.Tneu_0516"/>
    <dbReference type="CAZy" id="GT4">
        <property type="family name" value="Glycosyltransferase Family 4"/>
    </dbReference>
    <dbReference type="KEGG" id="tne:Tneu_0516"/>
    <dbReference type="eggNOG" id="arCOG01403">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017896_3_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004377">
        <property type="term" value="F:GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006487">
        <property type="term" value="P:protein N-linked glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038013">
        <property type="entry name" value="ALG11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45919">
        <property type="entry name" value="GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45919:SF1">
        <property type="entry name" value="GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyltransferase subfamily 4-like N-terminal" evidence="2">
        <location>
            <begin position="33"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyl transferase family 1" evidence="1">
        <location>
            <begin position="232"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="421" mass="47950" checksum="B784CD264AF55CE8" modified="2008-05-20" version="1">MRRGAPLLKDICQPVSYAMERYAVVAHHYWGTPGGGQLVCAAAAKALEEAGYRPALAGTFKFDPRRYVEWYGIDISRYPVETLPIAPRAFGLWSRLYVWLPAKKAAERYKPELLFIDEVAYKPLARGRRFRLVEYIHFPFEVVVDPRYRGTGLAYGEDPYIMERYGRFPMSLYWRAFVWGLKRYARENPFHYADAVLVNSRWTAQVAKMVYGQEPQVLNPPLPPNVEVVEKPRPFEEREPTVVMLGRFSQEKRYHWVVTEVAPRLLKEVPGAKIIIFGGAATPTLQAYRDRVRKMAEDAGLKTAETLDAHAHIYLIANAPRRVINDAMDKARAFLHATINEHWGIAVAEAMARGLTPAVHRSGGAWTDLVMEGRYGLGYTTAEEAVEALAKLLTQKASYAPQERARELVFQNFASALRRYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCH0</accession>
    <name>B1YCH0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349903.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCH0"/>
    <dbReference type="STRING" id="444157.Tneu_0540"/>
    <dbReference type="GeneID" id="6165763"/>
    <dbReference type="KEGG" id="tne:Tneu_0540"/>
    <dbReference type="eggNOG" id="arCOG01618">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023205_2_3_2"/>
    <dbReference type="OrthoDB" id="7236at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="entry name" value="NADP-dependent oxidoreductase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NAD(P)_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43638:SF3">
        <property type="entry name" value="ALDEHYDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43638">
        <property type="entry name" value="OXIDOREDUCTASE, ALDO/KETO REDUCTASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="NAD(P)-linked oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADP-dependent oxidoreductase" evidence="1">
        <location>
            <begin position="10"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="314" mass="34187" checksum="EA637C0CA7F4E230" modified="2008-05-20" version="1">MRIGVFEVGRIGVGAWQAGGGSWRVNFAELRRAYEYVLDNGVSFIDTAEIYGWGRSEEFVGELIKGRPHVVVATKVAGFNWGRVVKSAERSRRRLGRIDLLQLHWPPPIYVPVCRAVRELERAAQLGLTAEIGVSNFDAGMMEKAIYCAKRYNLASDQVVYNPLQRAAEALIEMGRRAGFAVIAWSPLAKGAAVKEKVGADGGRRFDPAVRKAATPQGRRVVEAVRGIAARRGASPAAVVLAWHAARGSFPIPGVKTLTQAKEVVEALRLELSEAEVAEIDAASAVFRGGAVWPKALRLIPGPLQRLAFRLVKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCI1</accession>
    <name>B1YCI1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0551</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349914.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCI1"/>
    <dbReference type="STRING" id="444157.Tneu_0551"/>
    <dbReference type="GeneID" id="6165754"/>
    <dbReference type="KEGG" id="tne:Tneu_0551"/>
    <dbReference type="eggNOG" id="arCOG00168">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033621_2_0_2"/>
    <dbReference type="OrthoDB" id="28038at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051408">
        <property type="entry name" value="Phosphate_transprt_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42922">
        <property type="entry name" value="PHOSPHATE TRANSPORT SYSTEM PERMEASE PROTEIN PSTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42922:SF1">
        <property type="entry name" value="PHOSPHATE TRANSPORT SYSTEM PERMEASE PROTEIN PSTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="73"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="108"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="157"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="241"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="272"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="69"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="293" mass="30961" checksum="0A0B2A3A592B122E" modified="2008-05-20" version="1">MRLRRALDKLGMALFVALAALAVAPLFWLIVDVYVKGAAAIAKLGGLWTFLLCPPPTPFDKEGGVGPMLVGTLYMTALGALAGFAVGFPLGVYIGEMGRERLAQVTRAGVNILVEFPTVAVGLFVYAVMSLAVDDLNRYLSKLPGGWFLGPLEGFNAYAGAAALAIVMIPYVALATASAYASVERPLREAAYGVGGREFNAVFIVLRKVVSRAVLTAALIGTAKAAGETAPLLFTAFGNTYYGPFTGPTGAVSLWIWYAAQSPYEVQILSAYGAAAVLLTIVLVIFILARVWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCJ8</accession>
    <name>B1YCJ8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Rad50/SbcC-type AAA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0569</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349931.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCJ8"/>
    <dbReference type="STRING" id="444157.Tneu_0569"/>
    <dbReference type="GeneID" id="6165751"/>
    <dbReference type="KEGG" id="tne:Tneu_0569"/>
    <dbReference type="eggNOG" id="arCOG05422">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_907985_0_0_2"/>
    <dbReference type="OrthoDB" id="29163at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051396">
        <property type="entry name" value="Bact_Antivir_Def_Nuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43581:SF3">
        <property type="entry name" value="AAA+ ATPASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43581">
        <property type="entry name" value="ATP/GTP PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="272" mass="29824" checksum="9B81F703C2B48509" modified="2008-05-20" version="1">MISRLYISGVRQIEETSLELREKVLLVGPNGGGKSSVIYSALALLYSISSTRSPAWAVENSFGELRNLVRGDRAVVEGVVGGETHKLVVDREGRAEVDGAPAPAALRRIEVGYFNTHVSVGRWGAQAFTEGVEVRAAEVAAWVEEQLRRLGIASRFHFDSYYSGAWIHTARAAYGVKRALGILLASYGAEAVFGEVYEAGLHYDLGAKIIGRVLAQLDAFVMLETHVPLYVKEALDRGWQVLYMRDGRAFEIADVADLKAIDEEAAWAYAYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCK1</accession>
    <name>B1YCK1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CRISPR system endoribonuclease Csx1 CARF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0572</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349934.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCK1"/>
    <dbReference type="STRING" id="444157.Tneu_0572"/>
    <dbReference type="GeneID" id="6165663"/>
    <dbReference type="KEGG" id="tne:Tneu_0572"/>
    <dbReference type="eggNOG" id="arCOG03433">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_459784_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10640">
        <property type="entry name" value="SSO1389-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053857">
        <property type="entry name" value="Csx1_CARF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22230">
        <property type="entry name" value="Csx1_CARF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160980">
        <property type="entry name" value="SSO1389-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRISPR system endoribonuclease Csx1 CARF" evidence="1">
        <location>
            <begin position="10"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="593" mass="67693" checksum="2886820BAD2E4E5A" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCN1</accession>
    <name>B1YCN1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">LysO family transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0605</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349964.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCN1"/>
    <dbReference type="STRING" id="444157.Tneu_0605"/>
    <dbReference type="GeneID" id="6165369"/>
    <dbReference type="KEGG" id="tne:Tneu_0605"/>
    <dbReference type="eggNOG" id="arCOG01615">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078428_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015661">
        <property type="term" value="F:L-lysine efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005642">
        <property type="entry name" value="LysO"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35804">
        <property type="entry name" value="LYSINE EXPORTER LYSO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35804:SF1">
        <property type="entry name" value="LYSINE EXPORTER LYSO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03956">
        <property type="entry name" value="Lys_export"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="150"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="185"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="251"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="276" mass="28461" checksum="D28E0BD554904FB7" modified="2008-05-20" version="1">MFDVVKYMLPLAVGYAVGKAARVRPPSWLFTALVAVLVFAVSANASGAVLSNPGLYLAVSLVYSLALVLTSAVLGSVFDRRREGRGAGKPLVSLYAAASLAAGFAVGAFAKADYASAVEPLLIVLLFAAGVDMANAGVRLERAALLAPAVALAASALVGVFFKAALGITPAVAFGLGWYTFTGPYLARAGDAAGGAYGLLVNFFREQLTYLLGPHLARRFGRVGVLAAGGATTMDNTLPLYTALYGSSFSLYAFTNGVILTFIVPLLVPAVHQTFG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCN7</accession>
    <name>SPEH_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">S-adenosylmethionine decarboxylase proenzyme</fullName>
            <shortName evidence="1">AdoMetDC</shortName>
            <shortName evidence="1">SAMDC</shortName>
            <ecNumber evidence="1">4.1.1.50</ecNumber>
        </recommendedName>
        <component>
            <recommendedName>
                <fullName evidence="1">S-adenosylmethionine decarboxylase beta chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="1">S-adenosylmethionine decarboxylase alpha chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="1" type="primary">speH</name>
        <name type="ordered locus">Tneu_0611</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-adenosyl-L-methionine + H(+) = S-adenosyl 3-(methylsulfanyl)propylamine + CO2</text>
            <dbReference type="Rhea" id="RHEA:15981"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57443"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="4.1.1.50"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </cofactor>
        <text evidence="1">Binds 1 pyruvoyl group covalently per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amine and polyamine biosynthesis; S-adenosylmethioninamine biosynthesis; S-adenosylmethioninamine from S-adenosyl-L-methionine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterotetramer of two alpha and two beta chains arranged as a dimer of alpha/beta heterodimers.</text>
    </comment>
    <comment type="PTM">
        <text evidence="1">Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The post-translation cleavage follows an unusual pathway, termed non-hydrolytic serinolysis, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl group blocking the N-terminus of the alpha chain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.50" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349970.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCN7"/>
    <dbReference type="SMR" id="B1YCN7"/>
    <dbReference type="STRING" id="444157.Tneu_0611"/>
    <dbReference type="GeneID" id="6165434"/>
    <dbReference type="KEGG" id="tne:Tneu_0611"/>
    <dbReference type="eggNOG" id="arCOG00279">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_125470_2_1_2"/>
    <dbReference type="OrthoDB" id="114016at2157"/>
    <dbReference type="UniPathway" id="UPA00331">
        <property type="reaction ID" value="UER00451"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004014">
        <property type="term" value="F:adenosylmethionine decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008295">
        <property type="term" value="P:spermidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.750">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.110">
        <property type="entry name" value="S-adenosylmethionine decarboxylase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00464">
        <property type="entry name" value="AdoMetDC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042286">
        <property type="entry name" value="AdoMetDC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003826">
        <property type="entry name" value="AdoMetDC_fam_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042284">
        <property type="entry name" value="AdoMetDC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016067">
        <property type="entry name" value="S-AdoMet_deCO2ase_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017716">
        <property type="entry name" value="S-AdoMet_deCOase_pro-enz"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03330">
        <property type="entry name" value="SAM_DCase_Bsu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33866">
        <property type="entry name" value="S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33866:SF2">
        <property type="entry name" value="S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02675">
        <property type="entry name" value="AdoMet_dc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56276">
        <property type="entry name" value="S-adenosylmethionine decarboxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword id="KW-0210">Decarboxylase</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-0620">Polyamine biosynthesis</keyword>
    <keyword id="KW-0670">Pyruvate</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword id="KW-0704">Schiff base</keyword>
    <keyword id="KW-0745">Spermidine biosynthesis</keyword>
    <keyword id="KW-0865">Zymogen</keyword>
    <feature type="chain" id="PRO_1000125465" description="S-adenosylmethionine decarboxylase beta chain" evidence="1">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_1000125466" description="S-adenosylmethionine decarboxylase alpha chain" evidence="1">
        <location>
            <begin position="70"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate; via pyruvic acid" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for processing activity" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor; for catalytic activity" evidence="1">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage (non-hydrolytic); by autolysis" evidence="1">
        <location>
            <begin position="69"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="modified residue" description="Pyruvic acid (Ser); by autocatalysis" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00464"/>
        </source>
    </evidence>
    <sequence length="124" mass="13503" checksum="A442EFB0333B7438" modified="2008-05-20" version="1" precursor="true">MAGGVGAQIVGRHIYGNLYGCEQQILKDEAALITIVKEAAKVANAILLSIGSYRFGPEGGLTVFAVVAESHISIHTWPEHGFATVDVYTCGDHTDPKAAFDYIVSKLKPRKVEAFFGDRSMYRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCU9</accession>
    <name>B1YCU9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0673</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350032.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCU9"/>
    <dbReference type="STRING" id="444157.Tneu_0673"/>
    <dbReference type="GeneID" id="6165276"/>
    <dbReference type="KEGG" id="tne:Tneu_0673"/>
    <dbReference type="eggNOG" id="arCOG05523">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2379537_0_0_2"/>
    <dbReference type="OrthoDB" id="28832at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="94" mass="11137" checksum="295CC38F36379E24" modified="2008-05-20" version="1">MKKREERRGPTLFDFVEKREEPARRNVQQQRDVADEFYKLLTSREAVTKEEALRWAKERGITTAELIRAVEKLVSEGKIRKRLDEEGNLVYTLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCW4</accession>
    <name>B1YCW4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Archaeal coiled-coil protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0688</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350047.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCW4"/>
    <dbReference type="STRING" id="444157.Tneu_0688"/>
    <dbReference type="GeneID" id="6165390"/>
    <dbReference type="KEGG" id="tne:Tneu_0688"/>
    <dbReference type="eggNOG" id="arCOG01159">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_843643_0_0_2"/>
    <dbReference type="OrthoDB" id="29014at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.950">
        <property type="entry name" value="Methyl-accepting chemotaxis protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039604">
        <property type="entry name" value="Bfr1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055545">
        <property type="entry name" value="DUF7121"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31027:SF2">
        <property type="entry name" value="LEBERCILIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31027">
        <property type="entry name" value="NUCLEAR SEGREGATION PROTEIN BFR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23435">
        <property type="entry name" value="DUF7121"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="4"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="167"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="329" mass="38950" checksum="7270C044CBF5C9A6" modified="2008-05-20" version="1">MYSREELLEKIREVNSRLDEIQRQIDDITNEINAKKNLLAEIRKQLAEVRSLIEGKRNQLQKTRELIGSLVEKKSQIINQIRGLRNELIQINITLQKYREKLVVYRNLLSTLNEYAGGKTLEKEKLKRIIEQLEYFFETSPTNPEWERQFIKYVSQIEKELNLVDSMEKVKAHIAELKKQADEYKNKRESIRNEIARLVQDLTTVKQELAQLKASRQEIYKELAKLKEKREELKKQREEVKAAILQLALRRKELRERRRAIQEELDKYNILLKALELAEKNKARAQAKAAATQSLKERADHLFNKLLNGERLTHDEIKILIEAGYLPEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCY2</accession>
    <name>B1YCY2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">YbaK/prolyl-tRNA synthetase associated region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0706</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350065.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCY2"/>
    <dbReference type="STRING" id="444157.Tneu_0706"/>
    <dbReference type="GeneID" id="6165602"/>
    <dbReference type="KEGG" id="tne:Tneu_0706"/>
    <dbReference type="eggNOG" id="arCOG04332">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094875_0_2_2"/>
    <dbReference type="OrthoDB" id="27691at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.960.10">
        <property type="entry name" value="YbaK/aminoacyl-tRNA synthetase-associated domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036754">
        <property type="entry name" value="YbaK/aa-tRNA-synt-asso_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007214">
        <property type="entry name" value="YbaK/aa-tRNA-synth-assoc-dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30411">
        <property type="entry name" value="CYTOPLASMIC PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30411:SF1">
        <property type="entry name" value="CYTOPLASMIC PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04073">
        <property type="entry name" value="tRNA_edit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55826">
        <property type="entry name" value="YbaK/ProRS associated domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YbaK/aminoacyl-tRNA synthetase-associated" evidence="1">
        <location>
            <begin position="15"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="131" mass="14282" checksum="32B662370298FD8D" modified="2008-05-20" version="1">MGLEEFGEVIRLNATVRTVREAAQAVGTDESRIVKTLVVYCGGGYRAYVIRGDKRLDLKKLGCRLATPEEVLSITGYPVGAVPPVLNIPVYIDRQLLEVEYVYGGGGNERSLLKFKPSSLVERGLATPVDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD18</accession>
    <name>B1YD18_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Inorganic pyrophosphatase</fullName>
            <ecNumber evidence="7">3.6.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Pyrophosphate phospho-hydrolase</fullName>
            <shortName evidence="7">PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ppa</name>
        <name evidence="8" type="ordered locus">Tneu_0742</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>diphosphate + H2O = 2 phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:24576"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="EC" id="3.6.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the PPase family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.1" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD18"/>
    <dbReference type="SMR" id="B1YD18"/>
    <dbReference type="STRING" id="444157.Tneu_0742"/>
    <dbReference type="KEGG" id="tne:Tneu_0742"/>
    <dbReference type="eggNOG" id="arCOG01711">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073198_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004427">
        <property type="term" value="F:inorganic diphosphate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006796">
        <property type="term" value="P:phosphate-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00412">
        <property type="entry name" value="pyrophosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.80.10:FF:000003">
        <property type="entry name" value="Inorganic pyrophosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.80.10">
        <property type="entry name" value="Inorganic pyrophosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00209">
        <property type="entry name" value="Inorganic_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008162">
        <property type="entry name" value="Pyrophosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036649">
        <property type="entry name" value="Pyrophosphatase_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002317">
        <property type="entry name" value="PRK01250.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10286">
        <property type="entry name" value="INORGANIC PYROPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00719">
        <property type="entry name" value="Pyrophosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50324">
        <property type="entry name" value="Inorganic pyrophosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00387">
        <property type="entry name" value="PPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00047820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="176" mass="20214" checksum="3E329573F457A026" modified="2008-05-20" version="1">MPKDPGMKAGKNPPEDIYVFIEIPKGSNIKYEFDEEMRAIVVDRILYTAMFYPFNYGYIPETLEEDGDPLDCLVVTHETLLPGVVIRARPIGVLITEDEEGVDRKIIAVPHEKVDPRFAGVRDVKDLPESVLSQIKHFFEHYKELEPGKWVKVKEFKGREEALKIISEAVSRKKNK</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-11-25" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD24</accession>
    <name>RL22_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein uL22</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L22</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl22</name>
        <name type="ordered locus">Tneu_0748</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="1">The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL22 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350107.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD24"/>
    <dbReference type="SMR" id="B1YD24"/>
    <dbReference type="STRING" id="444157.Tneu_0748"/>
    <dbReference type="GeneID" id="6165103"/>
    <dbReference type="KEGG" id="tne:Tneu_0748"/>
    <dbReference type="eggNOG" id="arCOG04098">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083987_0_2_2"/>
    <dbReference type="OrthoDB" id="314984at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002181">
        <property type="term" value="P:cytoplasmic translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00336">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.470.10">
        <property type="entry name" value="Ribosomal protein L22/L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01331_A">
        <property type="entry name" value="Ribosomal_uL22_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001063">
        <property type="entry name" value="Ribosomal_uL22"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057265">
        <property type="entry name" value="Ribosomal_uL22_arc-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005721">
        <property type="entry name" value="Ribosomal_uL22_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036394">
        <property type="entry name" value="Ribosomal_uL22_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003260">
        <property type="entry name" value="PRK04223.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01038">
        <property type="entry name" value="uL22_arch_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11593">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11593:SF10">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00237">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54843">
        <property type="entry name" value="Ribosomal protein L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_0000354550" description="Large ribosomal subunit protein uL22">
        <location>
            <begin position="1"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="185" mass="21536" checksum="042041CAAB0792D1" modified="2008-05-20" version="1">MPRHQNYSLSDEAAVQLVFRKYGVKVSAEQIAKAYAPEQKMSWKKSVEVARFIEGMTLRQAKSWLEDVVKMKRPIPIRTFKKKQAHHATPWSGWPVAKWPVKVARRFLDLLENLENNARFRGLDVERVVIVHAAAHKGYRIHNIMPRAFGRATRFDEQTVNVEVIAAELPQQVVPKRYRLNLVKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDA3</accession>
    <name>B1YDA3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Archaeal glutamate synthase [NADPH]</fullName>
            <ecNumber evidence="3">1.4.1.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0829</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>2 L-glutamate + NADP(+) = L-glutamine + 2-oxoglutarate + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15501"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="1.4.1.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the glutamate synthase family.</text>
    </comment>
    <dbReference type="EC" id="1.4.1.13" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDA3"/>
    <dbReference type="STRING" id="444157.Tneu_0829"/>
    <dbReference type="KEGG" id="tne:Tneu_0829"/>
    <dbReference type="eggNOG" id="arCOG00619">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_398833_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004355">
        <property type="term" value="F:glutamate synthase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006537">
        <property type="term" value="P:glutamate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02808">
        <property type="entry name" value="GltS_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024188">
        <property type="entry name" value="GltB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043578">
        <property type="entry name" value="GltB_archl_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002932">
        <property type="entry name" value="Glu_synthdom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43819">
        <property type="entry name" value="ARCHAEAL-TYPE GLUTAMATE SYNTHASE [NADPH]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43819:SF1">
        <property type="entry name" value="ARCHAEAL-TYPE GLUTAMATE SYNTHASE [NADPH]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01645">
        <property type="entry name" value="Glu_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500061">
        <property type="entry name" value="GOGAT_lg2_archl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006429">
        <property type="entry name" value="GOGAT_lg_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51395">
        <property type="entry name" value="FMN-linked oxidoreductases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0288">FMN</keyword>
    <keyword evidence="3" id="KW-0314">Glutamate biosynthesis</keyword>
    <keyword evidence="3" id="KW-0521">NADP</keyword>
    <keyword evidence="2 3 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamate synthase" evidence="4">
        <location>
            <begin position="83"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR006429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="681" mass="72935" checksum="83C4871C37D90727" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDC0</accession>
    <name>B1YDC0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glutamine amidotransferase type-2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0846</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350203.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDC0"/>
    <dbReference type="STRING" id="444157.Tneu_0846"/>
    <dbReference type="GeneID" id="6164470"/>
    <dbReference type="KEGG" id="tne:Tneu_0846"/>
    <dbReference type="eggNOG" id="arCOG03639">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086262_0_0_2"/>
    <dbReference type="OrthoDB" id="350529at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="entry name" value="Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42824">
        <property type="entry name" value="GLUTAMINE AMIDOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42824:SF1">
        <property type="entry name" value="GLUTAMINE AMIDOTRANSFERASE YAFJ-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13522">
        <property type="entry name" value="GATase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="1">
        <location>
            <begin position="2"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="218" mass="24120" checksum="7D01BE2B38E7E8D2" modified="2008-05-20" version="1">MCRFYISKGPIDLSRALKLAAKHDPYKQGDRQHGDGWGFVAASPTDFLLYKSAKPAWEDPTEVPLRDAVLAHARAASPNEPRGAAHAHPYLVYADGGEALFVAHNGSVDKWAMAGEVGVDPTRYTDSHILALFLAKRWSTPAKAFEEALRYVKTALNVAVLEFPSLRGHVYTYYRGPREYYALYLLEAGGARAVVSSTLMRHVDLPGRELENGTYLTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDJ9</accession>
    <name>B1YDJ9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0925</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350282.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDJ9"/>
    <dbReference type="STRING" id="444157.Tneu_0925"/>
    <dbReference type="GeneID" id="6164504"/>
    <dbReference type="KEGG" id="tne:Tneu_0925"/>
    <dbReference type="eggNOG" id="arCOG05711">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2313891_0_0_2"/>
    <dbReference type="OrthoDB" id="385797at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="98" mass="9339" checksum="3148C31A72EBB649" modified="2008-05-20" version="1">MTPGERAAALAALALGLYLIAASLGAAPLSLNAAVGIPLAVFGAAYAALGGTREALLWGGVLTIAGVSTAAGGAAPPLLVAGVALVFVSLFALLAGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDN8</accession>
    <name>B1YDN8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0966</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350321.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDN8"/>
    <dbReference type="STRING" id="444157.Tneu_0966"/>
    <dbReference type="GeneID" id="6164524"/>
    <dbReference type="KEGG" id="tne:Tneu_0966"/>
    <dbReference type="eggNOG" id="arCOG00175">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="18209at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03230">
        <property type="entry name" value="ABC_DR_subfamily_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050763">
        <property type="entry name" value="ABC_transporter_ATP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42711">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42711:SF5">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN NATA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="2"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="202" mass="22204" checksum="3D9B28E60EB2EF42" modified="2008-05-20" version="1">MIRAVRLGKRYGGSWVFRGVDLELPDAGMAAVVGPNGSGKTTLLKTLAGLLKPDEGEVYIDGAPLAEALRRMRRAVLYAHQEPLVLAGTVEDNLICHDGDVLDALGLTPHLHRKARHLSGGYKKLLTIARVLTCRPKAALLDEPTAYLDADKRKTLMDYLRQYSNKALVLLTTHYPGDIPPDTPHYELRDGAIKTTKPTYPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDP3</accession>
    <name>B1YDP3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ATP-cone domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0971</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350326.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDP3"/>
    <dbReference type="STRING" id="444157.Tneu_0971"/>
    <dbReference type="GeneID" id="6164620"/>
    <dbReference type="KEGG" id="tne:Tneu_0971"/>
    <dbReference type="eggNOG" id="arCOG03714">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2406518_0_0_2"/>
    <dbReference type="OrthoDB" id="39386at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005144">
        <property type="entry name" value="ATP-cone_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003796">
        <property type="entry name" value="RNR_NrdR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30455">
        <property type="entry name" value="TRANSCRIPTIONAL REPRESSOR NRDR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30455:SF2">
        <property type="entry name" value="TRANSCRIPTIONAL REPRESSOR NRDR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03477">
        <property type="entry name" value="ATP-cone"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51161">
        <property type="entry name" value="ATP_CONE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-cone" evidence="4">
        <location>
            <begin position="2"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="91" mass="10698" checksum="39483912288530D5" modified="2008-05-20" version="1">MVKVVKRDGRTEEFIPEKIVVSVLKAGAPVDVARKIARKVECAVMERENVTAQELTRMILAELKKANEQWYRNWIVFDQAVKRRRTEEELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDR5</accession>
    <name>B1YDR5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0996</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDR5"/>
    <dbReference type="STRING" id="444157.Tneu_0996"/>
    <dbReference type="KEGG" id="tne:Tneu_0996"/>
    <dbReference type="eggNOG" id="arCOG09814">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_904944_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="307" mass="34222" checksum="4157D5F547083DCA" modified="2008-05-20" version="1">MPRAKKGRSSGKSSGKAGGVQVRIDLQSAPQFVHLSAVYKAGLLSYMATGVEIWRWDDVDHYVEEYNSFIASVFERRGRRRADIQSLLLESRDFGALESFSQSSGLLESKEFIHLDGRFFYKEARKVFGIARAVLKVADAFDGFTRVRIGERWYHVFVDVEDRTAAGDLWGVNERVWRRASNLGGLALLLYAASLVVLKLGGVSGRLFVGGGSYYTATALPVEALSRMRRVARFFVELVESGSDYVEPAASAIWSAISLSEVYGEGGGRWRVAEDWGRLYQVARSMLASRWLSEGERRALDALFGYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDS0</accession>
    <name>B1YDS0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase associated with various cellular activities AAA_5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1001</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350353.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDS0"/>
    <dbReference type="STRING" id="444157.Tneu_1001"/>
    <dbReference type="REBASE" id="17647">
        <property type="entry name" value="TneMcrBP"/>
    </dbReference>
    <dbReference type="GeneID" id="6164836"/>
    <dbReference type="KEGG" id="tne:Tneu_1001"/>
    <dbReference type="eggNOG" id="arCOG03779">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_593997_0_0_2"/>
    <dbReference type="OrthoDB" id="9837at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052934">
        <property type="entry name" value="Methyl-DNA_Rec/Restrict_Enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37291">
        <property type="entry name" value="5-METHYLCYTOSINE-SPECIFIC RESTRICTION ENZYME B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37291:SF1">
        <property type="entry name" value="TYPE IV METHYL-DIRECTED RESTRICTION ENZYME ECOKMCRB SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="1">
        <location>
            <begin position="227"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="474" mass="53418" checksum="8FBD670C8AD5B59F" modified="2008-05-20" version="1">MSASQGRCYVILGSPENWHYAISEISKENELTPKYSGECNPQCLRVLREKKKNGKILWAFPNVEDYEDLKNNIEKYNEIYVLAVSTARFGKTTPAEDMKNAEVYLSKIVALGKVTKDDLVGGCSCQYWPNKDNNWYYKFFIEVLAYLDAQNGRDGFILKGFQPGSLKEVDCRLLFNILDLAIKSGIYKVPRCREESDVKLFKKAIDELKGQFPTVAKVVEKVGAALYAGNVLLVGPPGVGKTTLAVEFAKRLTGGDYILATANALWFRRDVIGGETIREGSVVWKSGLLIRAYNRAARNCGRPLLLIIDEINRADADKAFGEFFSIFRSPSPEDWEIPKTLVEEVEGYGDKADEEARAFLRNYREMGDAPLKRIRVLATMNTRDVRNLFLLGEALLRRFTVVKFDVSGSVFKTDEDLYSAYQNMNRAGDIPPSALIHAERLRGAYKALGFAEPRAEELIEMSSGGFALRRRRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="37" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDV3</accession>
    <name>B1YDV3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1035</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350386.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDV3"/>
    <dbReference type="STRING" id="444157.Tneu_1035"/>
    <dbReference type="GeneID" id="6164856"/>
    <dbReference type="KEGG" id="tne:Tneu_1035"/>
    <dbReference type="HOGENOM" id="CLU_2044506_0_0_2"/>
    <dbReference type="OrthoDB" id="373781at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="120" mass="13300" checksum="B040C0D72042B36E" modified="2008-05-20" version="1">MGSGCRHEVDIAHIEGRGHHRHLWDYLSKRLFLTPDCIRKVLSALLGEEAARNAVTFGENVYGGRYVVCIGVGSVGRWVGVRLVVEKTERCLRTRSAYPDPGCEPAYCVVVSDLCGVNLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDX6</accession>
    <name>B1YDX6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Formate dehydrogenase delta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1058</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350408.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDX6"/>
    <dbReference type="STRING" id="444157.Tneu_1058"/>
    <dbReference type="GeneID" id="6166320"/>
    <dbReference type="KEGG" id="tne:Tneu_1058"/>
    <dbReference type="eggNOG" id="arCOG04358">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056887_4_2_2"/>
    <dbReference type="OrthoDB" id="57189at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.10">
        <property type="entry name" value="Cytidine Deaminase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003786">
        <property type="entry name" value="FdhD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30592">
        <property type="entry name" value="FORMATE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30592:SF1">
        <property type="entry name" value="SULFUR CARRIER PROTEIN FDHD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02634">
        <property type="entry name" value="FdhD-NarQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="Cytidine deaminase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="225" mass="24277" checksum="A1B2F1E2860DE64A" modified="2008-05-20" version="1">MYKEVGGIKIAVDAEVEVYVNGERSAVFITAPVDLEALAYGYLYSEGYIDDLSQAGLKIEGRRIWAEVSRGRAAAVSTYTEDCGVAPLVKFKKGVEVPLDVAVDLAREFAKYTVWHVEPELAMHTSALYVDGVWLVVHDTSRHSGVVKLVGRYLMEGLVGQRKIGFTTGRVSADIVNRLASIGVSAIVSLRGPLYSGVEAACKLGIPLVANVKTRGFTPLCPSTI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDZ2</accession>
    <name>B1YDZ2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional activator, TenA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1074</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350424.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDZ2"/>
    <dbReference type="STRING" id="444157.Tneu_1074"/>
    <dbReference type="GeneID" id="6166159"/>
    <dbReference type="KEGG" id="tne:Tneu_1074"/>
    <dbReference type="eggNOG" id="arCOG01128">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077537_3_0_2"/>
    <dbReference type="OrthoDB" id="85443at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050334">
        <property type="term" value="F:thiaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006772">
        <property type="term" value="P:thiamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd19363">
        <property type="entry name" value="TenA_C_PH1161-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.910.10">
        <property type="entry name" value="Heme oxygenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016084">
        <property type="entry name" value="Haem_Oase-like_multi-hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004305">
        <property type="entry name" value="Thiaminase-2/PQQC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027574">
        <property type="entry name" value="Thiaminase_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050967">
        <property type="entry name" value="Thiamine_Salvage_TenA"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR04306">
        <property type="entry name" value="salvage_TenA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43198">
        <property type="entry name" value="BIFUNCTIONAL TH2 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43198:SF2">
        <property type="entry name" value="SI:CH1073-67J19.1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03070">
        <property type="entry name" value="TENA_THI-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48613">
        <property type="entry name" value="Heme oxygenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiaminase-2/PQQC" evidence="1">
        <location>
            <begin position="10"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="212" mass="24336" checksum="44E01C7776D7A283" modified="2008-05-20" version="1">MATEKLRAWADPIWQEILRHPFVVEVYRGSLPMDKFRYYLLQDYNYLVNFAKALSLAAARAPGVEQMKTALELAHGTVTGEMANYEALLREAGLTLKDAEGAEPNFVNVSYMSYLLSVCSLEGFYQCMAALLPCFWSYAEIAQRHRDALERNPVPLYRRWASVYLTPEYNALVEKLRALLESSGAPPEALWPYFRQASIYELKFWQAAYEGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="96" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE00</accession>
    <name>B1YE00_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Dihydroorotase, multifunctional complex type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1082</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350432.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE00"/>
    <dbReference type="STRING" id="444157.Tneu_1082"/>
    <dbReference type="GeneID" id="6164330"/>
    <dbReference type="KEGG" id="tne:Tneu_1082"/>
    <dbReference type="eggNOG" id="arCOG00689">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015572_1_1_2"/>
    <dbReference type="OrthoDB" id="8791at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004038">
        <property type="term" value="F:allantoinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006145">
        <property type="term" value="P:purine nucleobase catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.140">
        <property type="entry name" value="Metal-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050138">
        <property type="entry name" value="DHOase/Allantoinase_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002195">
        <property type="entry name" value="Dihydroorotase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43668">
        <property type="entry name" value="ALLANTOINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43668:SF2">
        <property type="entry name" value="ALLANTOINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="Composite domain of metallo-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="Metallo-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00483">
        <property type="entry name" value="DIHYDROOROTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydrolase-related" evidence="4">
        <location>
            <begin position="33"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="377" mass="41764" checksum="8F09B8238D3A8585" modified="2008-05-20" version="1">MCIAIEGRVYLGGRLARFKLGRGKTLQFSNRHLVLPGMVDIHVHFRGWELSYKETLEGGAAAALAGGVVAVGDMPNTRPHIRTAELYRRRMEEGSRLPVVYRLHMGVPRDLAELDAARPPTVKVYPEDVAEFGWGHVEALMRRCAGLGCAVVFHCEDPSLFRDGERPPEAELACVEKVRRLAVDTGARVHLTHVSLPQTVDAARGWATVDVTPHHLLLDRENCRLGGLCLVNPRLREPRQRRELLARLAAGLVDMYATDHAPHALEEKLSAAPPPGICSLEVALPLLLSLWRRGVIALEDVVRLYSYRPARFLGVNADPTAGYFTVVRLEEFAVRGEEFAGTCRHTPFEGFKAFGRVVATAVGGRVYFRDGEVEELC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE13</accession>
    <name>B1YE13_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">SMC domain protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1095</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350445.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE13"/>
    <dbReference type="STRING" id="444157.Tneu_1095"/>
    <dbReference type="GeneID" id="6165501"/>
    <dbReference type="KEGG" id="tne:Tneu_1095"/>
    <dbReference type="eggNOG" id="arCOG03242">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_603596_0_0_2"/>
    <dbReference type="OrthoDB" id="25344at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000731">
        <property type="term" value="P:DNA synthesis involved in DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006302">
        <property type="term" value="P:double-strand break repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014555">
        <property type="entry name" value="RecF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32182:SF22">
        <property type="entry name" value="ATP-DEPENDENT ENDONUCLEASE, OLD FAMILY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32182">
        <property type="entry name" value="DNA REPLICATION AND REPAIR PROTEIN RECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13304">
        <property type="entry name" value="AAA_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029347">
        <property type="entry name" value="RecF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RecF/RecN/SMC N-terminal" evidence="1">
        <location>
            <begin position="5"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="domain" description="ATPase AAA-type core" evidence="2">
        <location>
            <begin position="316"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="453" mass="50007" checksum="AFA89E35C10B975C" modified="2008-05-20" version="1">MYVFVRKVVVRNFKSIGELELELRPGVNLLVGANGAGKSNVLEAVRFARRALVEAASPYLPHAPDYLSPLDVIYGRDPRREVALGLGLELYGEAGGEWLSAYAEFTTYLRYRPQPYETIEPVRHVVKIGDTQAEIDRGGIAITAPKEDFDRAMKWIKENMKHIPFKLAEPKEEGGRAVVSYRWDMEAPLHLEGLRLVLWPGPRGWASEDLLACSQVAGGTLLPYPVALGRARRPRGVRVGPPLGFCLDDVLGAVRWVLGRMVFLRHVEKRVEPVPIAGGDVLDERGRNVAAVLFSYRGRFGRNPESVDRALAVLFPGVVLEVRQLYNSALLVAREGDVELPPSNIPDGLLKLVVLMLAVDLGPSLLLVDEVENSMHARLLEYVVDVFNGLDVPVLLATHSPVVVDLVDLERIYFLSRGPGGTRAEAVPDPGELRRRLGESGVAVSDYVFYGKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE14</accession>
    <name>B1YE14_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Alcohol dehydrogenase GroES domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1096</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350446.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE14"/>
    <dbReference type="STRING" id="444157.Tneu_1096"/>
    <dbReference type="GeneID" id="6165540"/>
    <dbReference type="KEGG" id="tne:Tneu_1096"/>
    <dbReference type="eggNOG" id="arCOG01459">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026673_11_0_2"/>
    <dbReference type="OrthoDB" id="73567at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030554">
        <property type="term" value="F:adenyl nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043168">
        <property type="term" value="F:anion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051262">
        <property type="term" value="P:protein tetramerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd08242">
        <property type="entry name" value="MDR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.180.10">
        <property type="entry name" value="Medium-chain alcohol dehydrogenases, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050129">
        <property type="entry name" value="Zn_alcohol_dh"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43401">
        <property type="entry name" value="L-THREONINE 3-DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43401:SF2">
        <property type="entry name" value="L-THREONINE 3-DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="GroES-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alcohol dehydrogenase-like N-terminal" evidence="5">
        <location>
            <begin position="24"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="Alcohol dehydrogenase-like C-terminal" evidence="4">
        <location>
            <begin position="161"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="323" mass="34407" checksum="13FE2906C2FC562F" modified="2008-05-20" version="1">MLAARLYGAGDLRVEEIPVPRPERGWALVRTLAVGVCGTDKAFYRGTYRLFKSPLVPGHEVVGVVEGGELDGRVVVSEINFACGRCEMCRAGLYTHCPYKRTLGIDFDGGMAEYFVAPLEALHPAEGLDPAAATQVEPLAAVLNALAQVPPPPGAKVAILGTGNMAYLAAQVLRGFDPVVVARRGSAKAHLFRGLGLEVVELGELGEYMAENAPLGFDVVFEASGDPSAINTAIEIARPRGVIHLKSTPGSPSPANLTPAVVKELRIVGTRCGTYREFRHAIKLIREGAVKPLITSVVAGIRNAREAFERALQPSEVKVVLKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE28</accession>
    <name>B1YE28_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoadenosine phosphosulfate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350460.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE28"/>
    <dbReference type="STRING" id="444157.Tneu_1110"/>
    <dbReference type="GeneID" id="6166264"/>
    <dbReference type="KEGG" id="tne:Tneu_1110"/>
    <dbReference type="eggNOG" id="arCOG00073">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_665019_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002500">
        <property type="entry name" value="PAPS_reduct_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050128">
        <property type="entry name" value="Sulfate_adenylyltrnsfr_sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43196:SF2">
        <property type="entry name" value="PHOSPHOADENOSINE PHOSPHOSULFATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43196">
        <property type="entry name" value="SULFATE ADENYLYLTRANSFERASE SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01507">
        <property type="entry name" value="PAPS_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Phosphoadenosine phosphosulphate reductase" evidence="1">
        <location>
            <begin position="24"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="392" mass="45221" checksum="7AD0F7F32648A459" modified="2008-05-20" version="1">MSLDLLLSEAFEVFEEAALKYRTFVIAFSGGKDSTAAAILFYKWAKRRNGVKNRVVLLHNDTLSEIPEMELWVDHFARQFKAKMRELGTDVHVRYAYPHPTETWYWRVLVRGYPAPTFNFRWCVDMLKIEPTERELRRHANHVLVVGSRDEESGARAKSMKTRFGTCSGGGSCLGAYFSHGDIPKIAPIRFWTYDMVWSFLRAQKDFDVQPLEELYRGLAAGGSLGGRYGCWHCTLVRVQAANYSRPEYLYAEAVRTIYRALSDMGQHFREPKNTGYSRWGPLNAHARSIIYHAIKAAEELAGRKIFYGLDRAAIYGYTLRQIFYEMDPQRADAIIRRADPTDRRIPTAELRRLDKTHLAALDSYLSSQNHRDEKTSQALRQIITRLKENTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="38" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE35</accession>
    <name>B1YE35_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1117</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE35"/>
    <dbReference type="STRING" id="444157.Tneu_1117"/>
    <dbReference type="KEGG" id="tne:Tneu_1117"/>
    <dbReference type="HOGENOM" id="CLU_1954746_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="128" mass="13815" checksum="96B29C609C536D07" modified="2008-05-20" version="1">MEELLITTRFILTFVSTITAVVGALSDTPNIYPIVSLLSMSLALTLRSIATYIVDEVVSIVYTLALSLIISIVGSIMVGEALSLFPIFDPTPLNTIVTSLEAAYIILNLVLLASDLIELLRTVNSPIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE36</accession>
    <name>B1YE36_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATPase AAA-type core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1118</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350468.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE36"/>
    <dbReference type="STRING" id="444157.Tneu_1118"/>
    <dbReference type="GeneID" id="6164804"/>
    <dbReference type="KEGG" id="tne:Tneu_1118"/>
    <dbReference type="eggNOG" id="arCOG03233">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_695628_0_0_2"/>
    <dbReference type="OrthoDB" id="25344at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051396">
        <property type="entry name" value="Bact_Antivir_Def_Nuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43581">
        <property type="entry name" value="ATP/GTP PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43581:SF2">
        <property type="entry name" value="EXCINUCLEASE ATPASE SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13304">
        <property type="entry name" value="AAA_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase AAA-type core" evidence="1">
        <location>
            <begin position="283"/>
            <end position="354"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="419" mass="45258" checksum="D1CEAB0D57A67365" modified="2008-05-20" version="1">MATYFSGVRVSVSNFGPVRRAELVAGDLTAVIGPNNVGKSWLASLIYAVHNLVFFHLPNFVKGALSEVGVRLCAGAGAECLRENLHEVEKVALERSKALAGEALKRELESVLGTSDFVTYGEEEAAVEASAPSLEVSFKALLPRGERPRVEVNIPSSLVKRAVEDVEWVAFSARGATLGFKGLLPMRRSVYIPAERIALLTAFYGVVEALVRLYGVSQLVREELPRQFFKPSLSLYAADVINLIRSGAVERVGGHFGDIGAALLDGDVAVEGGTMAVVYEHASGLRLPAALASSGVAQVAGLLLGLMVRRGDLAVVEEPEINLHANRQVQVAELLAREARRRPLFVTTHSDLVVMKLAHLYAKGEVESLRLYYLHDGELEDLPVDRSGGVPEIKSISSVIEELSGEALELYAKLQRGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE44</accession>
    <name>B1YE44_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1127</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350476.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE44"/>
    <dbReference type="STRING" id="444157.Tneu_1127"/>
    <dbReference type="GeneID" id="6165466"/>
    <dbReference type="KEGG" id="tne:Tneu_1127"/>
    <dbReference type="eggNOG" id="arCOG09846">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1912421_0_0_2"/>
    <dbReference type="OrthoDB" id="376598at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="131" mass="14222" checksum="B5AA34316561F547" modified="2008-05-20" version="1">MEWLSPATVIILVVAAAVLAAVLVVRRLQRRVVCPGDLSALRDAFAVIGAEAAWVGPYLAVRKRYGLIPVEVRVDCRRGAVSTRGPWPLALVLLFVPNFAFAAIILLLWIASEMDAFEKEVKDLLKAAAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE50</accession>
    <name>B1YE50_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">CRISPR-associated HD domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1133</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350482.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE50"/>
    <dbReference type="STRING" id="444157.Tneu_1133"/>
    <dbReference type="GeneID" id="6165797"/>
    <dbReference type="KEGG" id="tne:Tneu_1133"/>
    <dbReference type="eggNOG" id="arCOG01442">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1076128_0_0_2"/>
    <dbReference type="OrthoDB" id="38882at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3210.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006483">
        <property type="entry name" value="CRISPR-assoc_Cas3_HD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038257">
        <property type="entry name" value="CRISPR-assoc_Cas3_HD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109604">
        <property type="entry name" value="HD-domain/PDEase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51643">
        <property type="entry name" value="HD_CAS3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD Cas3-type" evidence="4">
        <location>
            <begin position="9"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="226" mass="25013" checksum="DFFA96519147FF69" modified="2008-05-20" version="1">MSCCAYFRGRDCLQTYEDHITQALEACERLRPYYGRWMEKAFGTADAAALAVEFHDLGKLARAYTAGNRARYRHEVLGAYFALRSVQTEARYYVAAAVALHHEPMILAAYAGELGERAIHVSTLRAMLKDSDLSLGCTPNYSYRPEVAAALREWASRPPTADDVADAFQELAVYLSGGAPQEVRVKRLRVAGLLHVLTVCDNWGARGRPGEGTFISRYMAASELGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE57</accession>
    <name>B1YE57_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">CRISPR-associated endonuclease Cas1</fullName>
            <ecNumber evidence="9">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">cas1</name>
        <name evidence="10" type="ordered locus">Tneu_1140</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="9">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer, forms a heterotetramer with a Cas2 homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the CRISPR-associated endonuclease Cas1 family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE57"/>
    <dbReference type="STRING" id="444157.Tneu_1140"/>
    <dbReference type="KEGG" id="tne:Tneu_1140"/>
    <dbReference type="eggNOG" id="arCOG01452">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052779_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09634">
        <property type="entry name" value="Cas1_I-II-III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.920">
        <property type="entry name" value="CRISPR-associated endonuclease Cas1, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.100.10.20">
        <property type="entry name" value="CRISPR-associated endonuclease Cas1, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01470">
        <property type="entry name" value="Cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050646">
        <property type="entry name" value="Cas1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002729">
        <property type="entry name" value="CRISPR-assoc_Cas1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042206">
        <property type="entry name" value="CRISPR-assoc_Cas1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042211">
        <property type="entry name" value="CRISPR-assoc_Cas1_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00287">
        <property type="entry name" value="cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34353">
        <property type="entry name" value="CRISPR-ASSOCIATED ENDONUCLEASE CAS1 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34353:SF2">
        <property type="entry name" value="CRISPR-ASSOCIATED ENDONUCLEASE CAS1 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01867">
        <property type="entry name" value="Cas_Cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="7 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 9" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8 9" id="KW-0464">Manganese</keyword>
    <keyword evidence="2 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 9" id="KW-0540">Nuclease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="211"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="290" mass="31804" checksum="4C4156C0B7C29F70" modified="2008-05-20" version="1">MAAYGARIRARKGLLLVETKEGAREYPLHEVDEVLLLTGGISITTRALRALLAAGATVAVFSPRGEPLGIFMKPIGDATGAKRRCQYKAAEDGRGLQYAKSWVFKKMLGQRDNIKAWRRRLRGYSQYAESLAKALQALRDAASPHAVLEAEAAAAEAYWAAYREVTGFPGRDQEGRDPVNAGLNYGYGILKALVYKSLILAGLDPYVGFLHVDKSGRPSLALDFMEQWRPRVDAVVAKMADKLESEGGLLTRRSRLELAAAVLEELHAAKRPLSAEIHREARALARSICT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8R2</accession>
    <name>B1Y8R2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1214</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350560.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8R2"/>
    <dbReference type="STRING" id="444157.Tneu_1214"/>
    <dbReference type="GeneID" id="6165092"/>
    <dbReference type="KEGG" id="tne:Tneu_1214"/>
    <dbReference type="eggNOG" id="arCOG05615">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1060145_0_0_2"/>
    <dbReference type="OrthoDB" id="29253at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="216" mass="23296" checksum="90C4B34B647F4B49" modified="2008-05-20" version="1">MWSTAYGVIAAALVAFALLYAASHTPYIAGVNTADQLYFAKASIGARGFNYTQDEEVFQKGSNVARALVVNITTSSGLFPAALPLGYKAEGRGGPILYQIYVNLIFCKRAPLPSGGSAYLYAIELRHSVDVLPWIEVEAPVGLDLGFYRQLWLKQKRPPVLGVPPPPNATYVLVPKALVYNATGDVATLYVEAPSPLIYIVDYPLKLPIACPTAFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8T8</accession>
    <name>B1Y8T8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ThiamineS protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1240</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350586.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8T8"/>
    <dbReference type="STRING" id="444157.Tneu_1240"/>
    <dbReference type="GeneID" id="6165984"/>
    <dbReference type="KEGG" id="tne:Tneu_1240"/>
    <dbReference type="eggNOG" id="arCOG00536">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114601_1_2_2"/>
    <dbReference type="OrthoDB" id="98357at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd17040">
        <property type="entry name" value="Ubl_MoaD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010038">
        <property type="entry name" value="MoaD_arc-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052045">
        <property type="entry name" value="Sulfur_Carrier/Prot_Modifier"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01687">
        <property type="entry name" value="moaD_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38031:SF1">
        <property type="entry name" value="SULFUR CARRIER PROTEIN CYSO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38031">
        <property type="entry name" value="SULFUR CARRIER PROTEIN SLR0821-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="MoaD/ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="94" mass="10330" checksum="2A1BDF5537A7DAA1" modified="2008-05-20" version="1">MKVVVKIYGPKYFGIDRYDVVTEVLEVDGEPTVMDVLDKLEGRYPGLKRRLLSGDVVAPMHDVLINGRSIAFLRGLTTALKDGDVVQIVPPFGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Y6</accession>
    <name>B1Y8Y6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">phosphoserine phosphatase</fullName>
            <ecNumber evidence="3">3.1.3.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1288</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 3/3.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.3" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350634.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Y6"/>
    <dbReference type="STRING" id="444157.Tneu_1288"/>
    <dbReference type="GeneID" id="6165512"/>
    <dbReference type="KEGG" id="tne:Tneu_1288"/>
    <dbReference type="eggNOG" id="arCOG01158">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036368_4_5_2"/>
    <dbReference type="OrthoDB" id="10041at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036424">
        <property type="term" value="F:L-phosphoserine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006564">
        <property type="term" value="P:L-serine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050582">
        <property type="entry name" value="HAD-like_SerB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43344">
        <property type="entry name" value="PHOSPHOSERINE PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43344:SF2">
        <property type="entry name" value="PHOSPHOSERINE PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08282">
        <property type="entry name" value="Hydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0718">Serine biosynthesis</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="208" mass="23079" checksum="3772BCA1C9C95B6C" modified="2008-05-20" version="1">MSYRVVILDVDGVITPFLSAWQRLHAVLGTEAGLNRALYRLGAIDYYEWALYDVLLWQGATRRFVEARFQTRRGLEALCGVLKEAGVYSIALSAGVGYTRRLSHCFDFYIVNDLVYNAGGVATVAVSVSDRNKDEIAERILGILGADWREVVAVGDGEADLHMLRKAGYSIAFNPTSEEVARAAKAVIRADTLYPLAKYLKAVLRRQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Z6</accession>
    <name>B1Y8Z6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Polar amino acid ABC transporter, inner membrane subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1298</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 8">Cell membrane</location>
            <topology evidence="1 8">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350644.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Z6"/>
    <dbReference type="STRING" id="444157.Tneu_1298"/>
    <dbReference type="GeneID" id="6165648"/>
    <dbReference type="KEGG" id="tne:Tneu_1298"/>
    <dbReference type="eggNOG" id="arCOG01798">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_1_0_2"/>
    <dbReference type="OrthoDB" id="60458at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614:SF0">
        <property type="entry name" value="L-CYSTINE TRANSPORT SYSTEM PERMEASE PROTEIN TCYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="MEMBRANE COMPONENT OF AMINO ACID ABC TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="62"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="187"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="17"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="229" mass="25384" checksum="22CF8832E5336193" modified="2008-05-20" version="1">MALQDFIEALPYVAQGIPTTLSLALLSFTIGLLLGAVLLLVRLFLPRPLPWLASAYVEAFRGTPLLVQIFIIYFGVGGYLKDYGLNIDPFTAGVIALGLNSAAYQAEIFRSAVQAIPLEQYLTAEAYAFTKTQTFRYIILPQALRIALPALMNELVLLIKDSSLVAVIGVAPPDIFRRADYYAASKFTYFEAYLAAAVVYFIICYAMVKISHHIERKYAIPGYLRRGVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y909</accession>
    <name>B1Y909_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl transferase group 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1311</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycogen phosphorylase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350657.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y909"/>
    <dbReference type="STRING" id="444157.Tneu_1311"/>
    <dbReference type="CAZy" id="GT35">
        <property type="family name" value="Glycosyltransferase Family 35"/>
    </dbReference>
    <dbReference type="GeneID" id="6165477"/>
    <dbReference type="KEGG" id="tne:Tneu_1311"/>
    <dbReference type="eggNOG" id="arCOG01421">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_552792_0_0_2"/>
    <dbReference type="OrthoDB" id="17863at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008184">
        <property type="term" value="F:glycogen phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000811">
        <property type="entry name" value="Glyco_trans_35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052182">
        <property type="entry name" value="Glycogen/Maltodextrin_Phosph"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42655">
        <property type="entry name" value="GLYCOGEN PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42655:SF1">
        <property type="entry name" value="GLYCOGEN PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00343">
        <property type="entry name" value="Phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="483" mass="55275" checksum="34FDEFF334E75230" modified="2008-05-20" version="1">MIVSITPEIGIGELRNFAGGLGVLEGDKFYAAARLGVPYTVITLFYPEGYVSYAEENGELVPTAEGNLLDRLTYLGGWEVEARGERVSGGYYIYRAGSAAAVFVKVDAPEWAARATRRLYYEDTESDRFYKYLILAKAAVSYVERYIGWDNVRYLDLQEAYTVFALLVKRHPRARLVVHTPAPWGHPTFNKRFFRDEFGFEMAMEPVVLTELGLSMAQEGIAVSKKMVGQLCNTFPHHCHKIRGVTNAVEVPRWEHPALAGLKSAEELRRARERAKEEALRALGVEARGKVVISWARRMTHYKRPHFVLQLIEDVDRDVVFILGGRAHPNDRYGVEMMKKFREASARDNVYYFPHLDVETEKRIIWASDIWLFTPFSGWEASGTSFMKAGINGVPSVASRDGAVVEVMEDGRNGWLFGGNRERLLPLDSPDIDQNEYREFRQKVEEALDAYSSGRYWEIAYNAYVTFRSYFSMERLFRDYGYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y935</accession>
    <name>B1Y935_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">MoaD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1338</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y935"/>
    <dbReference type="STRING" id="444157.Tneu_1338"/>
    <dbReference type="KEGG" id="tne:Tneu_1338"/>
    <dbReference type="eggNOG" id="arCOG00536">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114601_1_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd17040">
        <property type="entry name" value="Ubl_MoaD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010038">
        <property type="entry name" value="MoaD_arc-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054834">
        <property type="entry name" value="SAMP1_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052045">
        <property type="entry name" value="Sulfur_Carrier/Prot_Modifier"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01687">
        <property type="entry name" value="moaD_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041918">
        <property type="entry name" value="SAMP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38031:SF1">
        <property type="entry name" value="SULFUR CARRIER PROTEIN CYSO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38031">
        <property type="entry name" value="SULFUR CARRIER PROTEIN SLR0821-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="MoaD/ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="100" mass="10883" checksum="A10A054785FF03AD" modified="2008-05-20" version="1">MEGAVSHVKVRVKFLATLYERTGVLKTEVEIPEGSSVRDLIKILDSRFRGLESELLDESGGLKPMYNVLVNGRAVEWLNGLATALREGDEVVFIPPAAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y940</accession>
    <name>B1Y940_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">NurA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1343</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350688.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y940"/>
    <dbReference type="STRING" id="444157.Tneu_1343"/>
    <dbReference type="GeneID" id="6165321"/>
    <dbReference type="KEGG" id="tne:Tneu_1343"/>
    <dbReference type="eggNOG" id="arCOG05561">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_703252_0_0_2"/>
    <dbReference type="OrthoDB" id="15389at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018977">
        <property type="entry name" value="NurA_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09376">
        <property type="entry name" value="NurA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00933">
        <property type="entry name" value="NurA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NurA" evidence="2">
        <location>
            <begin position="60"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="18"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="393" mass="43870" checksum="6B503AE2CCCDC9E5" modified="2008-05-20" version="1">MALHDAETLDYWIEPDLLVALRHDLERYAQRLTQLRKLVEELSALRDRVQPREIGAPRQFDVYAVDSSYGSPPLELIGGVFTVVAYGYVGVVKGVQDRYLTGAVYFSDSREGDVSRFSSLLEKRLAARLLEAKANGRKSLDLLLLDGEIALHPLPYNLAARGGRYEEVNRAVDRMLRAAAQSRTTVVGVVKRVRSRYLSVAAGRCLPVNDKIAASAVLRQGEYLVLGKLRDILPRWAQLHYAECEGRAERDHILRCAGGEAVKLSERGERLCNRLREFGINFRRVLESGDYPNLRHLGDVEVAYYVPPGHKTAIRVEVLDFGALGVDNVISYLASTASTVTGFPQILDSVDQYVRVSQDLVEAVLTALLTKTPDSLAYIMWPTNAQKRLAGRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y950</accession>
    <name>B1Y950_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">30S ribosomal protein S25e</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1353</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eS25 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350698.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y950"/>
    <dbReference type="STRING" id="444157.Tneu_1353"/>
    <dbReference type="GeneID" id="6165008"/>
    <dbReference type="KEGG" id="tne:Tneu_1353"/>
    <dbReference type="eggNOG" id="arCOG04327">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_171557_0_0_2"/>
    <dbReference type="OrthoDB" id="31234at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004977">
        <property type="entry name" value="Ribosomal_eS25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03297">
        <property type="entry name" value="Ribosomal_S25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="28"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="113" mass="12707" checksum="A29E2CBD58103BB6" modified="2008-05-20" version="1">MGGKKRPTLSQLAKKAEKEKVQQQPQKGKKEVKKEEAQAKRTIQTLDEKVFQTIAKEVQSLKVVTPYEVASKYGIKMSIAFKVLRNLRDRGDLVLVSKGHRTEIYVPAGKAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y960</accession>
    <name>B1Y960_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CDP-alcohol phosphatidyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1363</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350708.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y960"/>
    <dbReference type="STRING" id="444157.Tneu_1363"/>
    <dbReference type="GeneID" id="6164665"/>
    <dbReference type="KEGG" id="tne:Tneu_1363"/>
    <dbReference type="eggNOG" id="arCOG00670">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080384_1_0_2"/>
    <dbReference type="OrthoDB" id="9904at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016780">
        <property type="term" value="F:phosphotransferase activity, for other substituted phosphate groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048254">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="162"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="186" mass="20417" checksum="572BE46CD879CC9F" modified="2008-05-20" version="1">MVSEKLRRYVNMDRVGRYIPLSPNVLTALSALVAWAGVPLVLFFGHPPWLYILLSGLLDGLDGAVARSKGVATRRGAFLDSFMDRYSDAAYLLYFLRQADPLALYLGLLGTFAISYARCRGESLGLEVRGVGFMERGERVAYLFLTAVAGEVAPQLQSPMLYLYIALVNIAAVYRMARIAAGLRGS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y992</accession>
    <name>ALBA_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA/RNA-binding protein Alba</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">albA</name>
        <name type="ordered locus">Tneu_1396</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds double-stranded DNA tightly but without sequence specificity. Involved in DNA compaction.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Chromosome</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="1">Acetylated. Acetylation at Lys-11 decreases DNA-binding affinity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the histone-like Alba family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350740.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y992"/>
    <dbReference type="SMR" id="B1Y992"/>
    <dbReference type="STRING" id="444157.Tneu_1396"/>
    <dbReference type="GeneID" id="6164979"/>
    <dbReference type="KEGG" id="tne:Tneu_1396"/>
    <dbReference type="eggNOG" id="arCOG01753">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_110989_1_0_2"/>
    <dbReference type="OrthoDB" id="10360at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030261">
        <property type="term" value="P:chromosome condensation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.20">
        <property type="entry name" value="Alba-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01122">
        <property type="entry name" value="AlbA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036882">
        <property type="entry name" value="Alba-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013795">
        <property type="entry name" value="DNA/RNA-bd_Alba"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002775">
        <property type="entry name" value="DNA/RNA-bd_Alba-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00285">
        <property type="entry name" value="DNA-binding protein Alba"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003088">
        <property type="entry name" value="PRK04015.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01918">
        <property type="entry name" value="Alba"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028732">
        <property type="entry name" value="Alba"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82704">
        <property type="entry name" value="AlbA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0007">Acetylation</keyword>
    <keyword id="KW-0158">Chromosome</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0226">DNA condensation</keyword>
    <keyword id="KW-0238">DNA-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000137257" description="DNA/RNA-binding protein Alba">
        <location>
            <begin position="1"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-acetyllysine" evidence="1">
        <location>
            <position position="11"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01122"/>
        </source>
    </evidence>
    <sequence length="92" mass="9811" checksum="FF95A3D3020413CC" modified="2008-05-20" version="1">MATEQTILVGKKPATNYVIATVMAFNAGVKRVVLKARGAAISKAVSTAVMVRDRFLPGKVQIKDIKVLSDKVQGQGGRERTVAAVEIVLEMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9A7</accession>
    <name>B1Y9A7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Aminotransferase class I and II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1411</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350755.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9A7"/>
    <dbReference type="STRING" id="444157.Tneu_1411"/>
    <dbReference type="GeneID" id="6165459"/>
    <dbReference type="KEGG" id="tne:Tneu_1411"/>
    <dbReference type="eggNOG" id="arCOG01130">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_4_3_2"/>
    <dbReference type="OrthoDB" id="372018at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00609">
        <property type="entry name" value="AAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II_large"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050596">
        <property type="entry name" value="AspAT/PAT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46383">
        <property type="entry name" value="ASPARTATE AMINOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46383:SF1">
        <property type="entry name" value="ASPARTATE AMINOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotransferase class I/classII large" evidence="7">
        <location>
            <begin position="32"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="393" mass="44302" checksum="0E5CB35B9045E46B" modified="2008-05-20" version="1">MRGFSSKIGALRESPTRKIDELREKLKRENRDVILLSTGQPSVPPPREVREAMKNLLGVDSMELYGYTPSLGTYEAREAISEDLKRLGGVDVPPEQIVLTAGGQAAMFSTLATLLEAGDEVVVTDPTYFGYRPLIEYFGASVKYLRTRLEDGFQPRPEELRSLVGRRTKALVLVSPDNPTGRTLKPEAAKAIVDLARDYDFWIIVDEAYKTLIYEGGHVYLYKLAPERTISINTFSKDPAIPGWRLGYVYGPPEVMPKIKLMNEEMVYCPPSFAQKMVTLYLRSEARMRYVREVVEIYRQRRDVAVSALRKYLPEARFVVPSGSMFVFVDLSSYVLDGESFAKQLLERYGVAVVPGSYFSEVYKAAVRISFVSETPERIEEGIRRMGEAAGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="94" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9F9</accession>
    <name>B1Y9F9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Succinate--CoA ligase [ADP-forming] subunit beta</fullName>
            <ecNumber evidence="7">6.2.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Succinyl-CoA synthetase subunit beta</fullName>
            <shortName evidence="7">SCS-beta</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">sucC</name>
        <name evidence="10" type="ordered locus">Tneu_1463</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>GTP + succinate + CoA = succinyl-CoA + GDP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:22120"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>succinate + ATP + CoA = succinyl-CoA + ADP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17661"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.2.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="7">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Heterotetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the succinate/malate CoA ligase beta subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.5" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9F9"/>
    <dbReference type="STRING" id="444157.Tneu_1463"/>
    <dbReference type="KEGG" id="tne:Tneu_1463"/>
    <dbReference type="eggNOG" id="arCOG01337">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037430_0_2_2"/>
    <dbReference type="BRENDA" id="6.2.1.5">
        <property type="organism ID" value="6328"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042709">
        <property type="term" value="C:succinate-CoA ligase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004775">
        <property type="term" value="F:succinate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004776">
        <property type="term" value="F:succinate-CoA ligase (GDP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006104">
        <property type="term" value="P:succinyl-CoA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.470.20:FF:000002">
        <property type="entry name" value="Succinate--CoA ligase [ADP-forming] subunit beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.261:FF:000007">
        <property type="entry name" value="Succinate--CoA ligase [ADP-forming] subunit beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="entry name" value="ATP-grasp fold, A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="entry name" value="Succinyl-CoA synthetase domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00558">
        <property type="entry name" value="Succ_CoA_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013650">
        <property type="entry name" value="ATP-grasp_succ-CoA_synth-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017866">
        <property type="entry name" value="Succ-CoA_synthase_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005811">
        <property type="entry name" value="SUCC_ACL_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005809">
        <property type="entry name" value="Succ_CoA_ligase-like_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001913">
        <property type="entry name" value="PRK00696.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01016">
        <property type="entry name" value="sucCoAbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11815:SF10">
        <property type="entry name" value="SUCCINATE--COA LIGASE [GDP-FORMING] SUBUNIT BETA, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11815">
        <property type="entry name" value="SUCCINYL-COA SYNTHETASE BETA CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08442">
        <property type="entry name" value="ATP-grasp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00549">
        <property type="entry name" value="Ligase_CoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001554">
        <property type="entry name" value="SucCS_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="Succinyl-CoA synthetase domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01217">
        <property type="entry name" value="SUCCINYL_COA_LIG_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 7 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="ATP-grasp" evidence="9">
        <location>
            <begin position="7"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="50"/>
            <end position="52"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared with subunit alpha</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="315"/>
            <end position="317"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared with subunit alpha</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="379" mass="41728" checksum="25255BF61426CCFB" modified="2008-05-20" version="1">MHEYEAKELLAKYGVEIPPGRLALTPDEALKAAKEIGTPVVLKAQVVVAGRGKAGGIKVAKTPEEAYELSKAMFGMNIKGLVVRKIYVTKYVEAEREMYLSLIIDRASRRYLFLASPVGGVDIEEIAKASPEKIKRVYVDPAVGLREFHIRQIGLWLGFRPGTRQWQQISSIVQAMYRVMVEYDAELVESNPLALTKDGDVIPLDARVIVDDNALYRHSDLEKALEEDPRDVTEFEAYAKKIGFHYVELDGDIGIIGNGAGLTMSTMDLVYHFGGRPANFLDIGGGASREVVREAVKVLLKHPRVRVVFINIFGGITRADEVALGVKDALAETGATKKIVVRLKGTNEEQGRAILSEVGVPLFENAEEAAQRAVELARV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9H6</accession>
    <name>B1Y9H6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9H6"/>
    <dbReference type="STRING" id="444157.Tneu_1480"/>
    <dbReference type="KEGG" id="tne:Tneu_1480"/>
    <dbReference type="eggNOG" id="arCOG04348">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037990_12_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004452">
        <property type="entry name" value="PRK05785.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43591">
        <property type="entry name" value="METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase type 11" evidence="1">
        <location>
            <begin position="63"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="239" mass="27257" checksum="E671E5F57964722E" modified="2008-05-20" version="1">MSTRHSAVGLGQSWHYVREAYRRIWRAYERANLVATLGGVDRWRREAVSLYYRRFGESPLKVVDAGAGPGNMARCLKGIRYVVALDATPEMLSLNAEADEKIVGIFEQMPFRDGSFDLLVAGYSLHASIDIERATAEFARVAKHQVVVSIGKPDNKLARRLLLLYTKHVLPWLVCLFTPRDVCLEYKKIHTIVQALPTNSKLREVVERYAEVIDFRVRAWGAVYLYLASSRLSSTQQRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9J9</accession>
    <name>B1Y9J9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1504</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350847.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9J9"/>
    <dbReference type="GeneID" id="6165104"/>
    <dbReference type="KEGG" id="tne:Tneu_1504"/>
    <dbReference type="eggNOG" id="arCOG05600">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1465160_0_0_2"/>
    <dbReference type="OrthoDB" id="28534at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="177" mass="18992" checksum="EA40DD7943212604" modified="2008-05-20" version="1">MQKPAVLLLLLLTAAVWADIVLVKGPSGNYTAVVNGSTLAIDGQKHAIPQKLSWYFNGSYTAYGIYYGNPQCVLSIWPDRPEFYITCTVGTDMTVVALKDPKAKITCRDKNNVLAPAVSTQHLEIYNAKGLYLECKSGFSATVSTPNLLLALLAGASAASATLLIALGVLLLRRAFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9K2</accession>
    <name>B1Y9K2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutaredoxin-like domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1507</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glutaredoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9K2"/>
    <dbReference type="STRING" id="444157.Tneu_1507"/>
    <dbReference type="KEGG" id="tne:Tneu_1507"/>
    <dbReference type="eggNOG" id="arCOG01218">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082677_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012336">
        <property type="entry name" value="Thioredoxin-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011903">
        <property type="entry name" value="TON_0319-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02187">
        <property type="entry name" value="PDO_seleno_TRX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37170:SF1">
        <property type="entry name" value="GLUTAREDOXIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37170">
        <property type="entry name" value="GLUTAREDOXIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13192">
        <property type="entry name" value="Thioredoxin_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin-like fold" evidence="2">
        <location>
            <begin position="163"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="250" mass="27328" checksum="85A05526A76C76CC" modified="2008-05-20" version="1">MHVGCVDMAVPIGGPEEVPHIEVDEETKEIIKEMLSQMENVVEVNFFTSANCGGRETNWCVPTEELIDLLAQLAPPGKLKVNKYSYDKDQEVFKKFGIEPQRVPAVIFGDGFVRYLGSPIGEEVRAFIETVVRLSTGKTGLRQKTRSELAALAQNAPKRVNVITVVTPSCPYCPYAVLLANMFAYESKGKVVSVVVEAHENPDIADMYGVTGVPTVILQAEDAAVGDVEFVGVPPEHELLARVKNHMGLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9M4</accession>
    <name>B1Y9M4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">pyruvate synthase</fullName>
            <ecNumber evidence="1">1.2.7.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1529</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>2 oxidized [2Fe-2S]-[ferredoxin] + pyruvate + CoA = 2 reduced [2Fe-2S]-[ferredoxin] + acetyl-CoA + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12765"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="1.2.7.1"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="1.2.7.1" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350872.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9M4"/>
    <dbReference type="STRING" id="444157.Tneu_1529"/>
    <dbReference type="GeneID" id="6166102"/>
    <dbReference type="KEGG" id="tne:Tneu_1529"/>
    <dbReference type="eggNOG" id="arCOG01603">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_087284_2_0_2"/>
    <dbReference type="OrthoDB" id="372091at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="entry name" value="Pyruvate-ferredoxin oxidoreductase, PFOR, domain III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051626">
        <property type="entry name" value="Oxidoreductase_gamma_subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011894">
        <property type="entry name" value="PorC_KorC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02175">
        <property type="entry name" value="PorC_KorC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43366">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43366:SF1">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="Pyruvate-ferredoxin oxidoreductase, PFOR, domain III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyruvate/ketoisovalerate oxidoreductase catalytic" evidence="4">
        <location>
            <begin position="10"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00049357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="177" mass="19124" checksum="99864D705E1AD7E8" modified="2008-05-20" version="1">MYEVIFIGRGGQGAVTAAQLLAYVAALEGKQAQALPEFGAERRGAVVKAYLRIGEPPLHSSMKKADYVVVLDGRIVDQIDVRQYGKPNAVYIVNTKREASWYIAIDATSIAIKHGLVVAGWPVVNLIMAAAFAAVSGAVSLEGILRALPEFVPRRYVDANRNAVVEAFNLMKLAKAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9M5</accession>
    <name>B1Y9M5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">UDP-N-acetyl-D-mannosamine dehydrogenase</fullName>
            <ecNumber evidence="1">1.1.1.336</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">UDP-ManNAc 6-dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1530</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>UDP-N-acetyl-alpha-D-mannosamine + 2 NAD(+) + H2O = UDP-N-acetyl-alpha-D-mannosaminouronate + 2 NADH + 3 H(+)</text>
            <dbReference type="Rhea" id="RHEA:25780"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:68623"/>
            <dbReference type="ChEBI" id="CHEBI:70731"/>
            <dbReference type="EC" id="1.1.1.336"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.336" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350873.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9M5"/>
    <dbReference type="STRING" id="444157.Tneu_1530"/>
    <dbReference type="GeneID" id="6165423"/>
    <dbReference type="KEGG" id="tne:Tneu_1530"/>
    <dbReference type="eggNOG" id="arCOG00252">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023810_3_2_2"/>
    <dbReference type="OrthoDB" id="372050at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016628">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0089714">
        <property type="term" value="F:UDP-N-acetyl-D-mannosamine dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017476">
        <property type="entry name" value="UDP-Glc/GDP-Man"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014027">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036220">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014026">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001732">
        <property type="entry name" value="UDP-Glc/GDP-Man_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028359">
        <property type="entry name" value="UDP_ManNAc/GlcNAc_DH"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03026">
        <property type="entry name" value="NDP-sugDHase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43491">
        <property type="entry name" value="UDP-N-ACETYL-D-MANNOSAMINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43491:SF5">
        <property type="entry name" value="UDP-N-ACETYL-D-MANNOSAMINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00984">
        <property type="entry name" value="UDPG_MGDP_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03720">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03721">
        <property type="entry name" value="UDPG_MGDP_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500136">
        <property type="entry name" value="UDP_ManNAc_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000124">
        <property type="entry name" value="UDPglc_GDPman_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00984">
        <property type="entry name" value="UDPG_MGDP_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="6-phosphogluconate dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52413">
        <property type="entry name" value="UDP-glucose/GDP-mannose dehydrogenase C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDP-glucose/GDP-mannose dehydrogenase C-terminal" evidence="8">
        <location>
            <begin position="333"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00030172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00049130"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR000124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="449" mass="48229" checksum="C29930E7BAD27D0D" modified="2008-05-20" version="1">MLADLLRRGELTVSIYGLGYVGLALSAAWAQAGAKVIGVDVNPAKVEKINAGRVEYPEDDVVKVLTEATRGGRFTATTDGVVASLRSQVKIVAVPVYLKKSPTSVEVDFTALTSAARAIGAGLKKGDLVIVESSVPPGATEDVVRPVLEGVSGLVAEEDFYLAYSPERIMVGHALKDIVENYPKVVAGVGPRSAEEAAELYRQVAKRGVVVLNSTREAEFEKLLEGVYRDVNIALANEMAKLANALGISFRRAREAANSQPYSHVHKPGTGVGGNCIPVYPYFLMWSAARLGIELPLTRLARQINERQPEEVAFAALRAMLKRGVNPASARIAILGLAFRGDIDDTRESPTYGVVATLLKLGIRPEQIVVHDPYVKQDSKLAEWGVALVNELEAALRGADLALVATDHSTYRIEASKIAKLMKTPLIVDARGVLIPDVDIYAIDSGAWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9M8</accession>
    <name>B1Y9M8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Thioredoxin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1533</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glutaredoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350876.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9M8"/>
    <dbReference type="STRING" id="444157.Tneu_1533"/>
    <dbReference type="GeneID" id="6166207"/>
    <dbReference type="KEGG" id="tne:Tneu_1533"/>
    <dbReference type="eggNOG" id="arCOG02868">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1318578_0_0_2"/>
    <dbReference type="OrthoDB" id="15256at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051470">
        <property type="entry name" value="Thiol:disulfide_interchange"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012336">
        <property type="entry name" value="Thioredoxin-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35272:SF3">
        <property type="entry name" value="THIOL:DISULFIDE INTERCHANGE PROTEIN DSBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35272">
        <property type="entry name" value="THIOL:DISULFIDE INTERCHANGE PROTEIN DSBC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13462">
        <property type="entry name" value="Thioredoxin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="2">
        <location>
            <begin position="5"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="204" mass="22241" checksum="D303DD76907CEBB5" modified="2008-05-20" version="1">MRIGALLLLATAAFVLIAALYTYKILASPPPPKPASGAIPIPSWAISVGSPEAPVVLVELFDLHCPYCAEAHEVLDPLYRRLLAEGRLRIVFVDFIVHPDAVLAHRYLHCAYQQLGNKTYDLITDLYKAYIDGGPDKQLQLLTRYQCPNAPTQKDFDAVAKAMAKALAQMGITQLGTPTFIVIRNGTVNVVVGKYPDKVAALIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9P6</accession>
    <name>B1Y9P6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349390.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9P6"/>
    <dbReference type="GeneID" id="6166287"/>
    <dbReference type="KEGG" id="tne:Tneu_0010"/>
    <dbReference type="eggNOG" id="arCOG05454">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1582984_0_0_2"/>
    <dbReference type="OrthoDB" id="28703at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="155" mass="17489" checksum="128F247F6FD695DA" modified="2008-05-20" version="1">MYLQVLELSLLAAAVAVLGFIIFFIARRQPPPPQAEAVARYTPGEQEIIRQVGELRERIDKLIPPYGRVGYIPSSLEELRDLLGFTYVKLGDRELGARVEGLDKLEGLDVDLLQAKLGDSYVYVVKRGEKRLVAVGGQYLDYLTIRFIGEFLDYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9P7</accession>
    <name>B1Y9P7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0011</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349391.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9P7"/>
    <dbReference type="GeneID" id="58787319"/>
    <dbReference type="KEGG" id="tne:Tneu_0011"/>
    <dbReference type="eggNOG" id="arCOG07002">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_208842_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="54" mass="5789" checksum="D21D7A8FDDB66628" modified="2008-05-20" version="1">MFIHMVAVYGAVVLAMGAIGGEPELVALGLTMLLLGNMHRLGKALSRQRKRIIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Q9</accession>
    <name>B1Y9Q9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Orotidine 5'-phosphate decarboxylase</fullName>
            <ecNumber evidence="2">4.1.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">OMP decarboxylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_0023</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2012-01" db="PDB data bank">
            <title>Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus complexed with inhibitor BMP.</title>
            <authorList>
                <person name="Fedorov A.A."/>
                <person name="Fedorov E.V."/>
                <person name="Desai B."/>
                <person name="Gerlt J.A."/>
                <person name="Almo S.C."/>
            </authorList>
        </citation>
        <scope>X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS)</scope>
        <scope>DISULFIDE BONDS</scope>
    </reference>
    <reference evidence="13" key="3">
        <citation type="submission" date="2012-01" db="PDB data bank">
            <title>Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus.</title>
            <authorList>
                <person name="Fedorov A.A."/>
                <person name="Fedorov E.V."/>
                <person name="Desai B."/>
                <person name="Gerlt J.A."/>
                <person name="Almo S.C."/>
            </authorList>
        </citation>
        <scope>X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS)</scope>
        <scope>DISULFIDE BONDS</scope>
    </reference>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 2/2.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.23" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349403.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="PDB" id="4DF0">
        <property type="method" value="X-ray"/>
        <property type="resolution" value="1.50 A"/>
        <property type="chains" value="A/B=1-202"/>
    </dbReference>
    <dbReference type="PDB" id="4DF1">
        <property type="method" value="X-ray"/>
        <property type="resolution" value="1.90 A"/>
        <property type="chains" value="A/B=1-202"/>
    </dbReference>
    <dbReference type="PDBsum" id="4DF0"/>
    <dbReference type="PDBsum" id="4DF1"/>
    <dbReference type="AlphaFoldDB" id="B1Y9Q9"/>
    <dbReference type="SMR" id="B1Y9Q9"/>
    <dbReference type="STRING" id="444157.Tneu_0023"/>
    <dbReference type="GeneID" id="6166266"/>
    <dbReference type="KEGG" id="tne:Tneu_0023"/>
    <dbReference type="eggNOG" id="arCOG00081">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067069_2_0_2"/>
    <dbReference type="OrthoDB" id="94124at2157"/>
    <dbReference type="EvolutionaryTrace" id="B1Y9Q9"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004590">
        <property type="term" value="F:orotidine-5'-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014732">
        <property type="entry name" value="OMPdecase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001754">
        <property type="entry name" value="OMPdeCOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32119">
        <property type="entry name" value="OROTIDINE 5'-PHOSPHATE DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32119:SF2">
        <property type="entry name" value="OROTIDINE 5'-PHOSPHATE DECARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00215">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00934">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="Ribulose-phoshate binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="evidence at protein level"/>
    <keyword evidence="13 14" id="KW-0002">3D-structure</keyword>
    <keyword evidence="4" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Orotidine 5'-phosphate decarboxylase" evidence="10">
        <location>
            <begin position="6"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="active site" description="For OMPdecase activity" evidence="8">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <feature type="active site" description="For OMPdecase activity" evidence="8">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <feature type="active site" description="For OMPdecase activity" evidence="8">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="disulfide bond" evidence="13 14">
        <location>
            <begin position="148"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00033428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR614732-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR614732-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB38981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0007829" key="13">
        <source>
            <dbReference type="PDB" id="4DF0"/>
        </source>
    </evidence>
    <evidence type="ECO:0007829" key="14">
        <source>
            <dbReference type="PDB" id="4DF1"/>
        </source>
    </evidence>
    <sequence length="202" mass="21927" checksum="8039512D14714DE5" modified="2008-05-20" version="1">MAANLPLVVALDTEVLKAIDVAKRLKGAVAGFKVGWDLIFEGGISIVGEIARYGNVIVDLKIADVPHVASRVVEKLVNRGACCVIVHGFLHPSLPRGQHVYVLVKMTAPTIYDEMWEKLLNSVQDVRGFVLPGNQPEVVAQARKRIGCSYRIISPGIGPQGGRPGAAIEAGADFEIVGRYVLEDPARISQWAQYRPTCFETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9U4</accession>
    <name>B1Y9U4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Nucleotide binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1570</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350913.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9U4"/>
    <dbReference type="STRING" id="444157.Tneu_1570"/>
    <dbReference type="GeneID" id="6166185"/>
    <dbReference type="KEGG" id="tne:Tneu_1570"/>
    <dbReference type="eggNOG" id="arCOG04130">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076814_1_0_2"/>
    <dbReference type="OrthoDB" id="7902at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.280">
        <property type="entry name" value="AF1531-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007003">
        <property type="entry name" value="DUF655"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40734:SF1">
        <property type="entry name" value="DNA-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40734">
        <property type="entry name" value="TRNA-SPECIFIC ADENOSINE DEAMINASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04919">
        <property type="entry name" value="DUF655"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160975">
        <property type="entry name" value="AF1531-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="193" mass="22487" checksum="868976FC40561D16" modified="2008-05-20" version="1">MRGRKEEYAYVIDILPPEVALYKLPPKMRRDFPHDVTYAHLVGEDHFALLEVTLKKGVSVEIGERLYVGLGTREKVDKIVRRIRYEDLQPQGRDNLKIVVRKIVEQQESRFVKWINETGPVTLKLHSLELLRGVGKKKVHEVLEERKKKPFSSYEEVKQRVGLDLVELITDRILREIAGEDPYYLFASPPPSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="93" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9V1</accession>
    <name>B1Y9V1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Arginine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Arginyl-tRNA synthetase</fullName>
            <shortName evidence="9">ArgRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">argS</name>
        <name evidence="12" type="ordered locus">Tneu_1577</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8 9">
            <text>tRNA(Arg) + L-arginine + ATP = L-arginyl-tRNA(Arg) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:20301"/>
            <dbReference type="Rhea" id="RHEA-COMP:9658"/>
            <dbReference type="Rhea" id="RHEA-COMP:9673"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78513"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.19"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9 10">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.19" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9V1"/>
    <dbReference type="STRING" id="444157.Tneu_1577"/>
    <dbReference type="KEGG" id="tne:Tneu_1577"/>
    <dbReference type="eggNOG" id="arCOG00487">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006406_6_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004814">
        <property type="term" value="F:arginine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006420">
        <property type="term" value="P:arginyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.620:FF:000659">
        <property type="entry name" value="DALR anticodon binding domain containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.730.10">
        <property type="entry name" value="Isoleucyl-tRNA Synthetase, Domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00123">
        <property type="entry name" value="Arg_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001278">
        <property type="entry name" value="Arg-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035684">
        <property type="entry name" value="ArgRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008909">
        <property type="entry name" value="DALR_anticod-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00456">
        <property type="entry name" value="argS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002446">
        <property type="entry name" value="PRK01611.3-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11956:SF5">
        <property type="entry name" value="ARGININE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11956">
        <property type="entry name" value="ARGINYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05746">
        <property type="entry name" value="DALR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00750">
        <property type="entry name" value="tRNA-synt_1d"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01038">
        <property type="entry name" value="TRNASYNTHARG"/>
    </dbReference>
    <dbReference type="SMART" id="SM00836">
        <property type="entry name" value="DALR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DALR anticodon binding" evidence="11">
        <location>
            <begin position="520"/>
            <end position="635"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="123"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB40501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="635" mass="71660" checksum="CE65FCEB01B743AC" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9X7</accession>
    <name>B1Y9X7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Calcineurin-like phosphoesterase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1604</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350946.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9X7"/>
    <dbReference type="GeneID" id="6166136"/>
    <dbReference type="KEGG" id="tne:Tneu_1604"/>
    <dbReference type="eggNOG" id="arCOG05666">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1381455_0_0_2"/>
    <dbReference type="OrthoDB" id="28355at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="199" mass="22242" checksum="518580DFDBB106B1" modified="2008-05-20" version="1">MIVFGDVHIGSPHAKIQELRRCLKALNTDEVAITGDLFDDQHRLVGYDDAARLIKKAMEILQIKPRRLYISFSSSSHDPQLPGPLVARIDGVEVYADNGNVLIEDVVKAALTHGDAAVKNGFAAYLIDLARRGQVGRWLRKKLALEDGVWLIYGHSHVPYLNAEEKILNPGSWKIYGVRRLRGNVYQLPSPKPLCQPDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Z4</accession>
    <name>B1Y9Z4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF2258 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1621</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350963.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Z4"/>
    <dbReference type="STRING" id="444157.Tneu_1621"/>
    <dbReference type="GeneID" id="6165861"/>
    <dbReference type="KEGG" id="tne:Tneu_1621"/>
    <dbReference type="eggNOG" id="arCOG03772">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1691618_0_0_2"/>
    <dbReference type="OrthoDB" id="15362at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017140">
        <property type="entry name" value="ThermoDBP-RPs_arc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10015">
        <property type="entry name" value="ThermoDBP-RP_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037214">
        <property type="entry name" value="UCP037214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="120"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="149" mass="17007" checksum="C6DF7B5DF028DCCD" modified="2008-05-20" version="1">MASWRLEENIQRDMEKAQEAVELYGGHVLKAPNRYEIRTGVVVAARFADKLRRTAFAVFGGVVPREEIVRATSELNRKIYEKLISMGVGKLDIVRITVEASVEGGRLVFGEPKIEWFIPHTALEKKLEECEKKMGEVRQKIEALLRELP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA20</accession>
    <name>B1YA20_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0036</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349416.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA20"/>
    <dbReference type="STRING" id="444157.Tneu_0036"/>
    <dbReference type="GeneID" id="6164999"/>
    <dbReference type="KEGG" id="tne:Tneu_0036"/>
    <dbReference type="eggNOG" id="arCOG06065">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_183470_0_0_2"/>
    <dbReference type="OrthoDB" id="24469at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB38994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="93" mass="10597" checksum="710D6E15958B3543" modified="2008-05-20" version="1">MLKAFERLVEISRTRGIRFVLHFSKCRGKVGIDREIKALDEEGRPAPWSRVFPGVTPQNILQQCVLKKVEVFRGSEPLGEYRTIEEALAALSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA24</accession>
    <name>B1YA24_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UPF0056 membrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0040</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Cell membrane</location>
            <topology evidence="1 7">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the UPF0056 (MarC) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA24"/>
    <dbReference type="STRING" id="444157.Tneu_0040"/>
    <dbReference type="KEGG" id="tne:Tneu_0040"/>
    <dbReference type="eggNOG" id="arCOG01997">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079909_2_1_2"/>
    <dbReference type="OrthoDB" id="10856at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002771">
        <property type="entry name" value="Multi_antbiot-R_MarC"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00427">
        <property type="entry name" value="NAAT family transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33508">
        <property type="entry name" value="UPF0056 MEMBRANE PROTEIN YHCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33508:SF1">
        <property type="entry name" value="UPF0056 MEMBRANE PROTEIN YHCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01914">
        <property type="entry name" value="MarC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="46"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="79"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="108"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="137"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="177"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB38998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="206" mass="21610" checksum="B5A0AB81CBD0CDB8" modified="2008-05-20" version="1">MTNLGSDLMELLTAVVALYVIVDPLGNIPLFAALTAGLSEAQRSRVLLLSVLVASAVLVLFAVFGVEIFGYFGVELGDFMIASGLILISFSLHQLIRPYEQRPATDGLEVAVVPLAVPYLAGPASISYVLLMSKHMGVAPTLLAVAAVSLLTFATLRASGFIMRALGVLGIRVVEKIMLILSVAIGVSLVRRGLEAGWSLGASSRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAB1</accession>
    <name>B1YAB1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">FUN14 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0128</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349506.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAB1"/>
    <dbReference type="STRING" id="444157.Tneu_0128"/>
    <dbReference type="GeneID" id="6165719"/>
    <dbReference type="KEGG" id="tne:Tneu_0128"/>
    <dbReference type="eggNOG" id="arCOG04811">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_181239_0_0_2"/>
    <dbReference type="OrthoDB" id="28824at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="93" mass="9680" checksum="0DEA1FAE527975BB" modified="2008-05-20" version="1">MLGEVLALLGPFIVGFLVGVLAKRLLSAAVALLALFVALAALGYISPQQVTAILQQLGYAAKDAVYYATKVKDAVPYSSLAFLLGLALGLWKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAB4</accession>
    <name>B1YAB4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">2-oxoacid oxidoreductase (ferredoxin)</fullName>
            <ecNumber evidence="2">1.2.7.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0131</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a 2-oxocarboxylate + 2 oxidized [2Fe-2S]-[ferredoxin] + CoA = an acyl-CoA + 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:42316"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="1.2.7.11"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterodimer composed of an alpha and a beta subunit.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.11" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349509.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAB4"/>
    <dbReference type="STRING" id="444157.Tneu_0131"/>
    <dbReference type="GeneID" id="6166117"/>
    <dbReference type="KEGG" id="tne:Tneu_0131"/>
    <dbReference type="eggNOG" id="arCOG01606">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017038_1_0_2"/>
    <dbReference type="OrthoDB" id="31112at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018491">
        <property type="term" value="F:2-oxobutyrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.970:FF:000022">
        <property type="entry name" value="2-oxoglutarate ferredoxin oxidoreductase alpha subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="entry name" value="Pyruvate-ferredoxin oxidoreductase, PFOR, domain III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050722">
        <property type="entry name" value="Pyruvate:ferred/Flavod_OxRd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32154:SF16">
        <property type="entry name" value="PYRUVATE FLAVODOXIN_FERREDOXIN OXIDOREDUCTASE DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32154">
        <property type="entry name" value="PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01855">
        <property type="entry name" value="POR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="Pyruvate-ferredoxin oxidoreductase, PFOR, domain III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="TK C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyruvate/ketoisovalerate oxidoreductase catalytic" evidence="5">
        <location>
            <begin position="12"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="Pyruvate flavodoxin/ferredoxin oxidoreductase pyrimidine binding" evidence="6">
        <location>
            <begin position="248"/>
            <end position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00048893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="625" mass="68202" checksum="7B5EC683E2A26F29" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAC9</accession>
    <name>B1YAC9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Large ribosomal subunit protein uL11</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpl11</name>
        <name evidence="6" type="ordered locus">Tneu_1656</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the universal ribosomal protein uL11 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350997.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAC9"/>
    <dbReference type="STRING" id="444157.Tneu_1656"/>
    <dbReference type="GeneID" id="6165613"/>
    <dbReference type="KEGG" id="tne:Tneu_1656"/>
    <dbReference type="eggNOG" id="arCOG04372">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074237_4_0_2"/>
    <dbReference type="OrthoDB" id="8842at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00349">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.250">
        <property type="entry name" value="Ribosomal protein L11, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1550.10">
        <property type="entry name" value="Ribosomal protein L11/L12, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00736">
        <property type="entry name" value="Ribosomal_uL11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000911">
        <property type="entry name" value="Ribosomal_uL11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020783">
        <property type="entry name" value="Ribosomal_uL11_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036769">
        <property type="entry name" value="Ribosomal_uL11_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036796">
        <property type="entry name" value="Ribosomal_uL11_N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002232">
        <property type="entry name" value="PRK01143.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11661">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11661:SF1">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL11M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00298">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00649">
        <property type="entry name" value="RL11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46906">
        <property type="entry name" value="Ribosomal protein L11, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Large ribosomal subunit protein uL11 C-terminal" evidence="5">
        <location>
            <begin position="70"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="167" mass="18466" checksum="94D1E657CA963C9D" modified="2008-05-20" version="1">MSKRVVAVPLQGGKVAPNPQFQDSLKQMGLDPNAVLQRVQEEVKKYGKYPIQKVEVEVVPPAKYDVKVHLPPIGDLFLKLFGKDTGAHDARNEVIGDLTFEQLVEIAVLKRDELKSRSLKAAVKQLLSTCKAMGITVGGKPAGEVLKEVDAGKYDEIINKFEKLWSQ</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAF2</accession>
    <name>Y1679_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA-binding protein Tneu_1679</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_1679</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PDCD5 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351020.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAF2"/>
    <dbReference type="SMR" id="B1YAF2"/>
    <dbReference type="STRING" id="444157.Tneu_1679"/>
    <dbReference type="GeneID" id="6165288"/>
    <dbReference type="KEGG" id="tne:Tneu_1679"/>
    <dbReference type="eggNOG" id="arCOG04179">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_122978_3_0_2"/>
    <dbReference type="OrthoDB" id="7912at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.140">
        <property type="entry name" value="PDCD5-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00026">
        <property type="entry name" value="dsDNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022889">
        <property type="entry name" value="DNA_bind_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002836">
        <property type="entry name" value="PDCD5-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036883">
        <property type="entry name" value="PDCD5-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003268">
        <property type="entry name" value="PRK04239.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10840">
        <property type="entry name" value="PROGRAMMED CELL DEATH PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10840:SF0">
        <property type="entry name" value="PROGRAMMED CELL DEATH PROTEIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01984">
        <property type="entry name" value="dsDNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015730">
        <property type="entry name" value="TFAR19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46950">
        <property type="entry name" value="Double-stranded DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0238">DNA-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000090214" description="DNA-binding protein Tneu_1679">
        <location>
            <begin position="1"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00026"/>
        </source>
    </evidence>
    <sequence length="110" mass="12713" checksum="7271BB90EDD43BDC" modified="2008-05-20" version="1">MAEGGYEDRELEELRRKKLEELQKKAELERQAQIAAAQRRIALKKILTPAALARLDNIRVVRPELAEALEQQLIALASSGRVRVPIDEDTLKEILEAVYSQSKREYRFRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAH7</accession>
    <name>B1YAH7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1706</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351045.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAH7"/>
    <dbReference type="GeneID" id="6165469"/>
    <dbReference type="KEGG" id="tne:Tneu_1706"/>
    <dbReference type="eggNOG" id="arCOG09841">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1754778_0_0_2"/>
    <dbReference type="OrthoDB" id="23660at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="148" mass="16290" checksum="B3DF6443F01DDCF3" modified="2008-05-20" version="1">MVLAFREGECLLFGAVRLSAEAVYVLEGCALAGWSALAAHLGTAQPLPFHPPYLQFVCPSLDAVVEKAVKTSLRVWRGRRRVSLGTRLGKEAEVVEGSVTGERFRCGLYVQRCDEAVRHIATHGPGSKYLKLLPRYVEEGLCLHKRLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAJ7</accession>
    <name>B1YAJ7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-dependent pyridine nucleotide-disulphide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1728</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351065.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAJ7"/>
    <dbReference type="STRING" id="444157.Tneu_1728"/>
    <dbReference type="GeneID" id="6164713"/>
    <dbReference type="KEGG" id="tne:Tneu_1728"/>
    <dbReference type="eggNOG" id="arCOG01292">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000422_3_3_2"/>
    <dbReference type="OrthoDB" id="27922at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051394">
        <property type="entry name" value="Glutamate_Synthase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009409">
        <property type="entry name" value="PRK12770.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43100">
        <property type="entry name" value="GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43100:SF1">
        <property type="entry name" value="GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00368">
        <property type="entry name" value="FADPNR"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00411">
        <property type="entry name" value="PNDRDTASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51971">
        <property type="entry name" value="Nucleotide-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD/NAD(P)-binding" evidence="1">
        <location>
            <begin position="18"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="349" mass="37955" checksum="D787245C0B5A8F52" modified="2008-05-20" version="1">MKFLLRCRPNTKKPPTGKKVAVVGAGPAGLGAAGVLLCNGHEVHIYDALPEPGGLLIFGIPSFRVPREGVREGVKELAEAGAVFYTSTFVYCGEKPHDHEALRLVKQFVRLEDLVEKYDAVLITTGTWRSREMGIPGEDLEGVYKALDYLFRIYANQLGYLPREEVYPTGRRVLVVGGGLVAVDAAIEAKLQGAEKVVVAYRRTINEAPAGRSTIEKELLARGVEFRELLTPVAFLGERRLERARFVKMRLGPPDKTGRPRPEPVPGSEFEEEFDTALVAVGEAPTPPGRCLGIELNPDGTIKVDEKMQTTKRGVFAAGDVVIGPSLIGKALSSGMKAAQHIHEFLTSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAQ8</accession>
    <name>B1YAQ8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0181</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349558.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAQ8"/>
    <dbReference type="STRING" id="444157.Tneu_0181"/>
    <dbReference type="GeneID" id="6164643"/>
    <dbReference type="KEGG" id="tne:Tneu_0181"/>
    <dbReference type="eggNOG" id="arCOG05480">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_172289_0_0_2"/>
    <dbReference type="OrthoDB" id="27175at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="114" mass="12772" checksum="A7BEABF30F31EF60" modified="2008-05-20" version="1">MPLIKTYIDERGEPRARIVDEGGRYVISLDVFKQLERAPPDTEVLAVGERYRILVRRRSLLGGVCEFVYFQFPGGVQLINAKYVGPDDPDAAIEALLKAYQEEVSQGEKDGGNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAR1</accession>
    <name>B1YAR1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0184</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349561.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAR1"/>
    <dbReference type="STRING" id="444157.Tneu_0184"/>
    <dbReference type="GeneID" id="6164820"/>
    <dbReference type="KEGG" id="tne:Tneu_0184"/>
    <dbReference type="eggNOG" id="arCOG00130">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_686287_0_0_2"/>
    <dbReference type="OrthoDB" id="117970at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050171">
        <property type="entry name" value="MFS_Transporters"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23517">
        <property type="entry name" value="RESISTANCE PROTEIN MDTM, PUTATIVE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="37"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="66"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="92"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="133"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="158"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="198"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="243"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="277"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="305"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="339"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="367"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily (MFS) profile" evidence="8">
        <location>
            <begin position="1"/>
            <end position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="405" mass="41366" checksum="26D074DB54BB3692" modified="2008-05-20" version="1">MRLTASYVPIFVARVGSGASAFLVVKLASGSSLEAGVVLAAYPFLEALGALVAGRWSDTLGRKKTLVAGYVVRSAAMLLLALAFYMHNSPALVGFLYGVIGLTTAFILTASLTMATDLTEVKNRGVGMGGFELVNLGSYGVGYLVGSALYTMLKGPAAYLAVALFTAMATPVFAKFLEETRPAAPTGGRFLLSVLPPSAVVLLPVWFALTTIIGLGVFAPRVLQVGQGVGGVGEKIVGRLGESLAVGLLFVGALALLGAGALFFGRLVDRWGRLKTFRLGLAGGFAALLVLNIALHVGLGPLEAIAITAPLLFLTSAIGPSILALIGDEADVRYRGTTMGIYSVVLGLGIGIGSLIGGAVATVSQQYAINGIAAAALAVYAAMAALHIALARTNGLREAALSGPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAR4</accession>
    <name>B1YAR4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UBA/THIF-type NAD/FAD binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0187</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HesA/MoeB/ThiF family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349564.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAR4"/>
    <dbReference type="STRING" id="444157.Tneu_0187"/>
    <dbReference type="GeneID" id="6165066"/>
    <dbReference type="KEGG" id="tne:Tneu_0187"/>
    <dbReference type="eggNOG" id="arCOG01676">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013325_10_4_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004792">
        <property type="term" value="F:thiosulfate-cyanide sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008641">
        <property type="term" value="F:ubiquitin-like modifier activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00757">
        <property type="entry name" value="ThiF_MoeB_HesA_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000080">
        <property type="entry name" value="Thiazole biosynthesis adenylyltransferase ThiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045886">
        <property type="entry name" value="ThiF/MoeB/HesA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000594">
        <property type="entry name" value="ThiF_NAD_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035985">
        <property type="entry name" value="Ubiquitin-activating_enz"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10953:SF102">
        <property type="entry name" value="ADENYLYLTRANSFERASE AND SULFURTRANSFERASE MOCS3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10953">
        <property type="entry name" value="UBIQUITIN-ACTIVATING ENZYME E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00899">
        <property type="entry name" value="ThiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69572">
        <property type="entry name" value="Activating enzymes of the ubiquitin-like proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THIF-type NAD/FAD binding fold" evidence="2">
        <location>
            <begin position="10"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="248" mass="26434" checksum="D450023C9AA1E0B6" modified="2008-05-20" version="1">MSPVKILDRYSRQIAVIGEEGQRKVRSTAVAVFGVGGLGTLVARYVVGGGFRKVFLVDHDVVSPPDIHRQILYTSREVGRPKAEVAAAVLRDVNPEVEVVPIAEAVSPQLAEEVLGEADIAVDALDNWASRHVVNAASVKRGRPLVHGAVQEWYGHVTTVVPGATPCLEDIFGRFKSLPTCATGFCPVLGPAVGVIASLMALEVFNTALGKPALAGKLLVVDLKHMAFDAIELQRNPACPVCGVSRRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAT4</accession>
    <name>B1YAT4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0208</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349584.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAT4"/>
    <dbReference type="STRING" id="444157.Tneu_0208"/>
    <dbReference type="GeneID" id="6165005"/>
    <dbReference type="KEGG" id="tne:Tneu_0208"/>
    <dbReference type="eggNOG" id="arCOG02197">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1902013_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2380.10">
        <property type="entry name" value="CGI121/TPRKB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036504">
        <property type="entry name" value="CGI121/TPRKB_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="129" mass="14455" checksum="961C4FCF1716478C" modified="2008-05-20" version="1">MELLMRCGEELCLRVEKTQTPSFESPGGALTICVKPDAFAHWLELAQAMYYAYHWRGPARNPNISALMFLSRRDQIREALTISAASGEAVCATLGPKEALEQTRQGEPHYPEGPFDPWKITKFALDLVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAW4</accession>
    <name>B1YAW4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Histone deacetylase superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1746</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351083.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAW4"/>
    <dbReference type="STRING" id="444157.Tneu_1746"/>
    <dbReference type="GeneID" id="6165389"/>
    <dbReference type="KEGG" id="tne:Tneu_1746"/>
    <dbReference type="eggNOG" id="arCOG00324">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007727_8_0_2"/>
    <dbReference type="OrthoDB" id="147549at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004407">
        <property type="term" value="F:histone deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0040029">
        <property type="term" value="P:epigenetic regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd10001">
        <property type="entry name" value="HDAC_classII_APAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.800.20">
        <property type="entry name" value="Histone deacetylase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023801">
        <property type="entry name" value="His_deacetylse_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037138">
        <property type="entry name" value="His_deacetylse_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10625:SF10">
        <property type="entry name" value="HISTONE DEACETYLASE HDAC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10625">
        <property type="entry name" value="HISTONE DEACETYLASE HDAC1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00850">
        <property type="entry name" value="Hist_deacetyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="Arginase/deacetylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Histone deacetylase" evidence="1">
        <location>
            <begin position="18"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="336" mass="37052" checksum="8852C940A15193A8" modified="2008-05-20" version="1">MLVYFSEVFKGHVPPYRHPEAPDRLDFLIEGAREAGADIKEPRMREDVWQLVESVHDRSYVELVRRLCRKGDVQIDGDTYVSAGTCDAAALAVSAVVDAVDRKETALVAARPPGHHAGFAGRALSAPSQGFCIFNTAAIGALYVGEGAAVVDIDVHHGNGTQEILYDRDLLYISTHQHPLTLYPGTGYPEEVGVGRGEGYNVNVPLPPRTGDDLYAKAVDEVVVPVLKQYGPRLIIISLGWDAHREDPLADMNLTLKSYLYVFDAVLRLQKPTIFLLEGGYNRGVIKRGTKALVRLVDAGEFAPGESQTSTDGHTAKRYEEVMREVKSHVGRYWRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAW7</accession>
    <name>B1YAW7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 13">Threonylcarbamoyl-AMP synthase</fullName>
            <shortName evidence="13">TC-AMP synthase</shortName>
            <ecNumber evidence="3 13">2.7.7.87</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11 13">L-threonylcarbamoyladenylate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ordered locus">Tneu_1749</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12 13">
            <text>L-threonine + hydrogencarbonate + ATP = L-threonylcarbamoyladenylate + diphosphate + H2O</text>
            <dbReference type="Rhea" id="RHEA:36407"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="ChEBI" id="CHEBI:73682"/>
            <dbReference type="EC" id="2.7.7.87"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the SUA5 family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.87" evidence="3 13"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351086.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAW7"/>
    <dbReference type="STRING" id="444157.Tneu_1749"/>
    <dbReference type="GeneID" id="6164739"/>
    <dbReference type="KEGG" id="tne:Tneu_1749"/>
    <dbReference type="eggNOG" id="arCOG01952">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031397_0_0_2"/>
    <dbReference type="OrthoDB" id="39992at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003725">
        <property type="term" value="F:double-stranded RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061710">
        <property type="term" value="F:L-threonylcarbamoyladenylate synthase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006450">
        <property type="term" value="P:regulation of translational fidelity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.870.10:FF:000009">
        <property type="entry name" value="Threonylcarbamoyl-AMP synthase, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.870.10">
        <property type="entry name" value="DHBP synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11030">
        <property type="entry name" value="Threonylcarbamoyl-AMP synthase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017945">
        <property type="entry name" value="DHBP_synth_RibB-like_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006070">
        <property type="entry name" value="Sua5-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038385">
        <property type="entry name" value="Sua5/YwlC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005145">
        <property type="entry name" value="Sua5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010923">
        <property type="entry name" value="T(6)A37_SUA5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050156">
        <property type="entry name" value="TC-AMP_synthase_SUA5"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00057">
        <property type="entry name" value="L-threonylcarbamoyladenylate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17490">
        <property type="entry name" value="SUA5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17490:SF16">
        <property type="entry name" value="THREONYLCARBAMOYL-AMP SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03481">
        <property type="entry name" value="Sua5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01300">
        <property type="entry name" value="Sua5_yciO_yrdC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004930">
        <property type="entry name" value="Tln_factor_SUA5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55821">
        <property type="entry name" value="YrdC/RibB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51163">
        <property type="entry name" value="YRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 13 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 13 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 13" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 13" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="YrdC-like" evidence="15">
        <location>
            <begin position="13"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>L-threonine</name>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>L-threonine</name>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>L-threonine</name>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>L-threonine</name>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>L-threonine</name>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="235"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00015492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRNR" id="PIRNR004930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR004930-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ACB40667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="345" mass="36748" checksum="7C2A7D6F8F712C19" modified="2008-05-20" version="1">MKILRTDPLRPDPQVVKTAAEVLRRGGIVAAPTETVYGLFADARSDAGCARVFKAKGRPPDNPLIVHVDSVEMATEVAEVPAELYEVLKRVWPGPLTLVLKSKGVVSRCVTAGLETVAVRAPAHPVPLAIIRELGAPIAGPSANKAGRPSPTAAEHVVEDLGGEVDVVVDGGPTFFGVESTIIDVTKRPPLLLRPGPFTVEELERFFGPIEVPPVARGLSEADVAVAPGMKYRHYAPDTPLVVVHFDLSAAAAALRSRGLRVAVLCAVGKCAEADAVLRLGDDIYEVAKNLYGALRELDRLSVDVGLVPAVEERGIGLAVMNRLRKAAGHREAFNLEDLLRYELG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="43" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAY6</accession>
    <name>B1YAY6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1768</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351105.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAY6"/>
    <dbReference type="STRING" id="444157.Tneu_1768"/>
    <dbReference type="GeneID" id="6165533"/>
    <dbReference type="KEGG" id="tne:Tneu_1768"/>
    <dbReference type="eggNOG" id="arCOG12860">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2857245_0_0_2"/>
    <dbReference type="OrthoDB" id="26999at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="64" mass="7544" checksum="44DE73DF864F8326" modified="2008-05-20" version="1">MKAYLVTRDPRGAWPRDVKILYLPFAEEDVLYVVDERRGFVEISGREKIEEFIGQLRSGRRTSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB02</accession>
    <name>B1YB02_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">THUMP domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1784</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351121.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB02"/>
    <dbReference type="STRING" id="444157.Tneu_1784"/>
    <dbReference type="GeneID" id="6165156"/>
    <dbReference type="KEGG" id="tne:Tneu_1784"/>
    <dbReference type="eggNOG" id="arCOG00084">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097042_0_0_2"/>
    <dbReference type="OrthoDB" id="26307at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11717">
        <property type="entry name" value="THUMP_THUMPD1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2300.10">
        <property type="entry name" value="THUMP superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004114">
        <property type="entry name" value="THUMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040183">
        <property type="entry name" value="THUMPD1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13452">
        <property type="entry name" value="THUMP DOMAIN CONTAINING PROTEIN 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13452:SF10">
        <property type="entry name" value="THUMP DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02926">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00981">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143437">
        <property type="entry name" value="THUMP domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51165">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="THUMP" evidence="2">
        <location>
            <begin position="61"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="174" mass="19947" checksum="CB5F05558B8E18C6" modified="2008-05-20" version="1">MSWNLVVATGWRQERLCMEELYRVGDIVGRRVEEIWFTGFDGLLTAKVEGDPVEFVKLLIEVVRSGYYIPRYILRATPIMVVVKTDLDEIQRAVGELAKAHIGPGESFKIELKKRGVKFDRAAVIEYVAKAVERRVDLTKPDKVVWIEMFPSRTGVSVIREEENFSLMRARSAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB21</accession>
    <name>B1YB21_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1803</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351140.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB21"/>
    <dbReference type="STRING" id="444157.Tneu_1803"/>
    <dbReference type="GeneID" id="6164567"/>
    <dbReference type="KEGG" id="tne:Tneu_1803"/>
    <dbReference type="eggNOG" id="arCOG01273">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_1_0_2"/>
    <dbReference type="OrthoDB" id="15394at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482:SF1">
        <property type="entry name" value="BRANCHED-CHAIN AMINO ACID TRANSPORT PERMEASE PROTEIN LIVM-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="59"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="110"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="143"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="189"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="241"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="281"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="324"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="369" mass="38897" checksum="BC05DD95068F8EC5" modified="2008-05-20" version="1">MRPLALVGLYVYGLSVAAVALSGLDVVSYILGTIVDVAIFAIIALSINLEAGVGGIPNFGKVLTVTAGAFIVGGVVSRLAMSIYGVSGDFVYDNPTIVSNLAKAMDPQGALLLLALSLLFSLAAGAAIGVAMSLPAVRLREDYLAITLLAFGDVLFYVGRYYEPFVGGTFGVSIPPILEKVFGGGFSRYLGAAVLAGAVALAVYLVLDRLVNSPYGRALRVHREDPELVEVFGRRATALRLWAMAVGGAVSATAGALYALYAGAVHASSFTRITFTFYPWLIMILGGMGNNLGVVNGVFIFVTLRRLIDMYKYELSSILGFDPVWLAYMLFGALALAIIAAKPEGLIPEEQTPLAKRRKIQRSGAAAGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB79</accession>
    <name>B1YB79_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0257</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349631.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB79"/>
    <dbReference type="STRING" id="444157.Tneu_0257"/>
    <dbReference type="GeneID" id="6165464"/>
    <dbReference type="KEGG" id="tne:Tneu_0257"/>
    <dbReference type="eggNOG" id="arCOG06989">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_192663_0_0_2"/>
    <dbReference type="OrthoDB" id="28050at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="84" mass="9214" checksum="75ACDCA5A1D5E50E" modified="2008-05-20" version="1">MNTKPLVYVLSAVAVVLGLLFLISTISAPSLDTTIFARDLVTSILAIVLGIAAPFLIKRFRSEEAEEAGTSVYTHAEDTRYRRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB98</accession>
    <name>B1YB98_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">4Fe-4S ferredoxin-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0277</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349650.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB98"/>
    <dbReference type="STRING" id="444157.Tneu_0277"/>
    <dbReference type="GeneID" id="6165721"/>
    <dbReference type="KEGG" id="tne:Tneu_0277"/>
    <dbReference type="eggNOG" id="arCOG00335">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027059_3_0_2"/>
    <dbReference type="OrthoDB" id="23833at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006089">
        <property type="term" value="P:lactate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="entry name" value="Alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10420">
        <property type="entry name" value="NagB/RpiA/CoA transferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024185">
        <property type="entry name" value="FTHF_cligase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003741">
        <property type="entry name" value="LUD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004452">
        <property type="entry name" value="LutB/LldF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47153">
        <property type="entry name" value="LACTATE UTILIZATION PROTEIN B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47153:SF2">
        <property type="entry name" value="LACTATE UTILIZATION PROTEIN B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02589">
        <property type="entry name" value="LUD_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46548">
        <property type="entry name" value="alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="NagB/RpiA/CoA transferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="296"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="391" mass="42810" checksum="F87455E3C8AD2BAA" modified="2008-05-20" version="1">MRRQAAEGGWDEAFSRAYSHTAPRVRAVLERHPELARLAGEVRRAREEVVRNLDRYVEEFGRSVERVGGRFYLAETAEEARETAARIVGRGKVVVLGKNNVAIETGLRQRLEEEGNEVWETDLGEFLVQLSGGEPSHIIAPAIHMTREAAADLLRRRLGAAVPPEPAAIAQRAREFLREKILKADVGITGANALAADTGAVVLVENEGNIRLVSTAPPVHIVYDGVEKIVPTLLHAFMAAAVQAAYAGLYPPTYINMSAGPSSTADVENQRVSPAQGPREFHVVLVDNGRRRAARDPVLWEALLCVRCGRCHFHCPVYRALGREFGVPPYTGPMGVMWTAVTRGLDAAGPHALKCAHAGNCKEVCPMGIDIPKVIHEIRARYLKREVGPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBA4</accession>
    <name>B1YBA4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cobalt transport protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0283</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349656.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBA4"/>
    <dbReference type="STRING" id="444157.Tneu_0283"/>
    <dbReference type="GeneID" id="6165699"/>
    <dbReference type="KEGG" id="tne:Tneu_0283"/>
    <dbReference type="eggNOG" id="arCOG07045">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121283_0_0_2"/>
    <dbReference type="OrthoDB" id="28936at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="194" mass="20882" checksum="0ECC6145C272C7AB" modified="2008-05-20" version="1">MPTPRYGLAKLLLLLLLPAGWEAVLGLAPLLALHRRVAAAAGGFALASYLSLALFVGPGEALTPSLVLFKNLVVLGLLFHAVSPGEVAWALRRAGVGGRWAYVLPMSLRAYSVISREVKTLLAVAKARGARGPRAVLASALPLVVFVFDYAEYLDVQLRQRSFECLAERPPLYTRWDALLLASLVAALVVQHAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBB4</accession>
    <name>B1YBB4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0293</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349666.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBB4"/>
    <dbReference type="STRING" id="444157.Tneu_0293"/>
    <dbReference type="GeneID" id="6165778"/>
    <dbReference type="KEGG" id="tne:Tneu_0293"/>
    <dbReference type="eggNOG" id="arCOG09766">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2662499_0_0_2"/>
    <dbReference type="OrthoDB" id="380816at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="72" mass="7789" checksum="8B327DBBAB099DB2" modified="2008-05-20" version="1">MSRAQLKTLEKVRRLAKVSQAVYLSASVIGIAVVFYPAVLNAAVGGLLEKLLPPAVYNAIHELRHLLGIPCH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBC7</accession>
    <name>B1YBC7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Band 7 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0307</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the band 7/mec-2 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349679.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBC7"/>
    <dbReference type="STRING" id="444157.Tneu_0307"/>
    <dbReference type="GeneID" id="6166108"/>
    <dbReference type="KEGG" id="tne:Tneu_0307"/>
    <dbReference type="eggNOG" id="arCOG01915">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024949_2_2_2"/>
    <dbReference type="OrthoDB" id="10752at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098552">
        <property type="term" value="C:side of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.479.30:FF:000004">
        <property type="entry name" value="Putative membrane protease family, stomatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="entry name" value="Band 7 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050710">
        <property type="entry name" value="Band7/mec-2_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018080">
        <property type="entry name" value="Band_7/stomatin-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001972">
        <property type="entry name" value="Stomatin_HflK_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43327">
        <property type="entry name" value="STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43327:SF10">
        <property type="entry name" value="STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00721">
        <property type="entry name" value="STOMATIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="Band 7/SPFH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01270">
        <property type="entry name" value="BAND_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Band 7" evidence="6">
        <location>
            <begin position="24"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="285" mass="30976" checksum="10129847F9B45910" modified="2008-05-20" version="1">MYLQIVELVAALLLVAVVVALLASSIRIVPEFQRLVVLRLGRLVGIRGPGLVFLIPVIDRGIPIDLRERVIEVSKQTCITKDNAPVDIDLLIYLKVVEPEKVVTTVENFIAAATGIATTTLRAVVGDIELDEVLAKREYINSVLRSKLDEVTARWGVKVTAVEIREITPPIDVQSAMVKQIAAERERRAMIAQADGEKQAAILKAEGQKQAAILQAEGERQAAILRAEGQAKALDYINEAASKLGQNALLLQYIDALKAIASSPSTKIVVPLELLTAIQKIIKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBG5</accession>
    <name>B1YBG5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1852</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351186.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBG5"/>
    <dbReference type="STRING" id="444157.Tneu_1852"/>
    <dbReference type="GeneID" id="6164793"/>
    <dbReference type="KEGG" id="tne:Tneu_1852"/>
    <dbReference type="eggNOG" id="arCOG02187">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044170_0_0_2"/>
    <dbReference type="OrthoDB" id="15347at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050572">
        <property type="entry name" value="Fe-S_Ferredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43687">
        <property type="entry name" value="ADENYLYLSULFATE REDUCTASE, BETA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43687:SF6">
        <property type="entry name" value="L-ASPARTATE SEMIALDEHYDE SULFURTRANSFERASE IRON-SULFUR SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13237">
        <property type="entry name" value="Fer4_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14697">
        <property type="entry name" value="Fer4_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="8">
        <location>
            <begin position="75"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="8">
        <location>
            <begin position="105"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="8">
        <location>
            <begin position="248"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="8">
        <location>
            <begin position="277"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="368" mass="40768" checksum="8FD392069AAC952B" modified="2008-05-20" version="1">MSDKPSIVIVEGREDLSRRLSRAPLYFAYRGPHGEWFRTVAEKHLDTDWSSLPPAEVKAAARRELITGGFIRLRDTVVVDQAKCIWCGMCAKSCPATAFEYVERRSIRVMYDRCVDCGLCNALCPVEAVKMPSLPDGFLAELIKTAPGPLKFICDYAFQDGDEEGVRVKCIAAIPKQYLYIAAAKYGEARAHCSRGERCPLWPAVERWGAGLAREGRDFVVRAEKAPLQPGDRWQTRMLAAALGMPVGRVEVAEGCTLCGACVNVCPTDALSIKGFELRLTPALCIACGVCAEKCPERVVRVAEAREDKPYESRAIFRDSPAKCSSCGKPLPYTETMARKLAERLKERGLPHEHIYLCEECRLSSSPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBL5</accession>
    <name>B1YBL5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1902</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351236.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBL5"/>
    <dbReference type="STRING" id="444157.Tneu_1902"/>
    <dbReference type="GeneID" id="6164888"/>
    <dbReference type="KEGG" id="tne:Tneu_1902"/>
    <dbReference type="eggNOG" id="arCOG05434">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1493053_0_0_2"/>
    <dbReference type="OrthoDB" id="27067at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1400">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53800">
        <property type="entry name" value="Chelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="4"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="182" mass="19609" checksum="FEFC069639A298BD" modified="2008-05-20" version="1">MRLQAIVLIFHGSRDPTHNAQAAEIAKALGVSYAFLEAAEPRYRGGGLGVPMFIADGSDYRKALEVAAVKAPPLLGWPGFVEYLRGLGADLYIFHGPDAEGQIRGTGLPVALLHGEPNVESAPCVAAAAPVVLTRGVIYNEIARRYGRCRTRLLPPLAEQPGFIEYLRRALPAVLDLYAVHP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-09-02" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBN2</accession>
    <name>PURP_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase</fullName>
            <ecNumber evidence="2">6.3.4.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate--formate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">purP</name>
        <name type="ordered locus">Tneu_1919</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the ATP- and formate-dependent formylation of 5-aminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'-monophosphate (FAICAR) in the absence of folates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + formate + ATP = 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide + ADP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:24836"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58467"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="1">Binds 1 Mg(2+) or Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Purine metabolism; IMP biosynthesis via de novo pathway; 5-formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide (formate route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.23" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBN2"/>
    <dbReference type="SMR" id="B1YBN2"/>
    <dbReference type="STRING" id="444157.Tneu_1919"/>
    <dbReference type="KEGG" id="tne:Tneu_1919"/>
    <dbReference type="eggNOG" id="arCOG04346">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065084_0_0_2"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00134"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016879">
        <property type="term" value="F:ligase activity, forming carbon-nitrogen bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="entry name" value="ATP-grasp fold, A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01163">
        <property type="entry name" value="IMP_biosynth_PurP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023656">
        <property type="entry name" value="IMP_biosynth_PurP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009720">
        <property type="entry name" value="IMP_biosynth_PurP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010672">
        <property type="entry name" value="IMP_biosynth_PurP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38147:SF2">
        <property type="entry name" value="5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-MONOPHOSPHATE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38147">
        <property type="entry name" value="5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-MONOPHOSPHATE SYNTHETASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06849">
        <property type="entry name" value="DUF1246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06973">
        <property type="entry name" value="DUF1297"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004602">
        <property type="entry name" value="ATPgrasp_PurP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="PreATP-grasp domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0464">Manganese</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0658">Purine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000348642" description="5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase">
        <location>
            <begin position="1"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="2">
        <location>
            <begin position="130"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide</name>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="96"/>
        </location>
        <ligand>
            <name>5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide</name>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="153"/>
            <end position="198"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="220"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide</name>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="292"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000250" key="1"/>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01163"/>
        </source>
    </evidence>
    <sequence length="344" mass="38885" checksum="C4521CC79C4BD635" modified="2008-05-20" version="1">MLISGANPTHVSAALKRYDVEKLAVATVASHTALQILRGAKRFGFRTIAVAGRADAAEFYRQFGFIDEVWTADFRNFVKTAEKLVEANAVLVPHGSYVEYVGWRQALEAPVPTLGCRELIRWEADQYKKMELLQRAGVPTPRVYKTPEEVDRPVIVKLFGAKGGRGYFLARDREELRRRLAGLGEYIIQEYVFGVPAYYHFFSSPVYGRVEVFGADIRYESNVDGRTFGWVEPTFVVVGNLPLVLRESLLPTIWKYGVQFAKAVEEAVGCRLAGPYCLESIIRDDMSISVFEFSGRIVAGTNIYMGYGSPYSVLYFDRPMDMGERIAHEIREAARRGRLEDLFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBN4</accession>
    <name>B1YBN4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Proteinase inhibitor I4 serpin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1921</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the serpin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351255.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBN4"/>
    <dbReference type="STRING" id="444157.Tneu_1921"/>
    <dbReference type="MEROPS" id="I04.079"/>
    <dbReference type="GeneID" id="6164869"/>
    <dbReference type="KEGG" id="tne:Tneu_1921"/>
    <dbReference type="eggNOG" id="arCOG04933">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023330_0_3_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004867">
        <property type="term" value="F:serine-type endopeptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00172">
        <property type="entry name" value="serpin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.39.10">
        <property type="entry name" value="Alpha-1-antitrypsin, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.497.10">
        <property type="entry name" value="Antithrombin, subunit I, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023795">
        <property type="entry name" value="Serpin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023796">
        <property type="entry name" value="Serpin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000215">
        <property type="entry name" value="Serpin_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036186">
        <property type="entry name" value="Serpin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042178">
        <property type="entry name" value="Serpin_sf_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042185">
        <property type="entry name" value="Serpin_sf_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11461:SF211">
        <property type="entry name" value="GH10112P-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11461">
        <property type="entry name" value="SERINE PROTEASE INHIBITOR, SERPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00079">
        <property type="entry name" value="Serpin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00093">
        <property type="entry name" value="SERPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56574">
        <property type="entry name" value="Serpins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00284">
        <property type="entry name" value="SERPIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Serpin" evidence="2">
        <location>
            <begin position="52"/>
            <end position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="393" mass="43901" checksum="EC52D004C7A11FFE" modified="2008-05-20" version="1">MRLWALLPVTLALVVLLIFIVSLKEASTHSPPTSHTSAPAPLESGSYGDFAVSFYKRIALERLRENLVLSPYSVYKAFAMAYAGAAGETREEIGRVFGFGDDVCALAQAGRGVEEAVAAWVQLGFPLREEYERELSCLGAELRRVDFAERSALVEINRWIEEKTRGYVKDLIPTDYPRSQDIRVVLTSALFFNGSWWPLQFGRIGKREFQGVGPVEFMKLDLGSCVPSLRGRVSADLTVVELRFENTDVAMYVIMPKSLEDYVKGLTYEKLKRDITELPDEIVAVTMPLFTAEFKDSLKKVLIDIGIRSAFDKTRANFTRMSPIRIYIDEVFHGAYIKADEKGVVATAATAVVFVPVCAKVGGMEVVIDRPFLFVLADRRDGTIYFIGHVVKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBP3</accession>
    <name>B1YBP3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphatidate cytidylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1930</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351264.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBP3"/>
    <dbReference type="STRING" id="444157.Tneu_1930"/>
    <dbReference type="GeneID" id="6164957"/>
    <dbReference type="KEGG" id="tne:Tneu_1930"/>
    <dbReference type="eggNOG" id="arCOG01882">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1232825_0_0_2"/>
    <dbReference type="OrthoDB" id="31565at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="115"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="229" mass="24889" checksum="4A7C706552E00DE1" modified="2008-05-20" version="1">MSKIQELKALLARKLFHVVFVALVAVPLFVQIPPEPYIALLALASGVLYSLQIKEPYAWEELRQNFFKTLEELFARLEALLPLDKPELKTQYQNALRQLELLISMAERDYERRHGYLGILMGSLGFLIATAAFGPRHLPAAVVSMAVYDAVSAVAGTIFGGRRIFGKLTTWGTLLGYLANTAALVAVGMPLLHALAVTAMVVAADALSHEDNLTIPVAAAGGSYLLSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBU3</accession>
    <name>B1YBU3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Anaerobic ribonucleoside-triphosphate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0378</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349747.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBU3"/>
    <dbReference type="STRING" id="444157.Tneu_0378"/>
    <dbReference type="GeneID" id="6165245"/>
    <dbReference type="KEGG" id="tne:Tneu_0378"/>
    <dbReference type="eggNOG" id="arCOG04889">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002707_0_2_2"/>
    <dbReference type="OrthoDB" id="139164at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031250">
        <property type="term" value="C:anaerobic ribonucleoside-triphosphate reductase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004748">
        <property type="term" value="F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008998">
        <property type="term" value="F:ribonucleoside-triphosphate reductase (thioredoxin) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009265">
        <property type="term" value="P:2'-deoxyribonucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01675">
        <property type="entry name" value="RNR_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012833">
        <property type="entry name" value="NrdD"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02487">
        <property type="entry name" value="NrdD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006358">
        <property type="entry name" value="PRK08579.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21075">
        <property type="entry name" value="ANAEROBIC RIBONUCLEOSIDE-TRIPHOSPHATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21075:SF0">
        <property type="entry name" value="ANAEROBIC RIBONUCLEOSIDE-TRIPHOSPHATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13597">
        <property type="entry name" value="NRDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51998">
        <property type="entry name" value="PFL-like glycyl radical enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="606" mass="69828" checksum="035021CEE6103399" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBU5</accession>
    <name>B1YBU5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0380</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349749.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBU5"/>
    <dbReference type="STRING" id="444157.Tneu_0380"/>
    <dbReference type="GeneID" id="6165350"/>
    <dbReference type="KEGG" id="tne:Tneu_0380"/>
    <dbReference type="eggNOG" id="arCOG09837">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1357958_0_0_2"/>
    <dbReference type="OrthoDB" id="374135at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="210" mass="24050" checksum="BAA819F334B065A9" modified="2008-05-20" version="1">MGIRTVTILIFVIIFLMVSILFHLPVSVRFSVGKAPPGTCKFVFNNTMLNYTMYVEYWNGSLIYRGRGWYLVATGARDFAMGGLELEYSNGTRRSVEIAGVEKDGAFLMTGYHQPLIYTLDVACDIYLQYLRGQLPTPYEVKREGGKVVVVTRYSSSGYARYEWSGNVLTRFIYDVKYPNGVRIVEELTLHEQKPYDEKLYEAVLQKLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBV2</accession>
    <name>B1YBV2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Periplasmic binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0388</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349756.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBV2"/>
    <dbReference type="STRING" id="444157.Tneu_0388"/>
    <dbReference type="GeneID" id="6165093"/>
    <dbReference type="KEGG" id="tne:Tneu_0388"/>
    <dbReference type="eggNOG" id="arCOG03303">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038034_13_1_2"/>
    <dbReference type="OrthoDB" id="24039at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd01147">
        <property type="entry name" value="HemV-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1980">
        <property type="entry name" value="Nitrogenase molybdenum iron protein domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050902">
        <property type="entry name" value="ABC_Transporter_SBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30535:SF34">
        <property type="entry name" value="MOLYBDATE-BINDING PROTEIN MOLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30535">
        <property type="entry name" value="VITAMIN B12-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53807">
        <property type="entry name" value="Helical backbone' metal receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="2">
        <location>
            <begin position="77"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="29"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="396" mass="43173" checksum="59BC027E493A7864" modified="2008-05-20" version="1">MRKAIYLGIAALIILALLAYYLSQQPGAPTAAPPAQTTAPPPAATGVSTATPPPTARAVEVVDVLGRRVSVKAPVSRVVALGPGALRLVVYLNATDKLAGIEEIEKRPPRGRDYGYILWAKNLTSLPVIGQGGPDSPVNFEAVMKVGPDVIVMSPVLANSPDQVQEKTGIPVVVVSYSNAVGGVNFTTLFQSLRTLGVVLGREERAEELVRYMEDLIKDLKRRTANITQRPKVYVGAISYKGGQPFESTMSKFPPLVLLNTPGVADKYGIQPGAKIDWEALLKEQPDVIFIDLGNYALVAQDFNKSRDRYCSLKAFREGRVYGILPFNHYWSNIATLFADAYFMGKVLYPEAFRDVDPVAKADEIYREFLGAPLYTAVAKDFKGGFRQLTEFKCGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBY0</accession>
    <name>B1YBY0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Signal-transduction protein with CBS domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0416</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349784.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBY0"/>
    <dbReference type="STRING" id="444157.Tneu_0416"/>
    <dbReference type="GeneID" id="6166120"/>
    <dbReference type="KEGG" id="tne:Tneu_0416"/>
    <dbReference type="eggNOG" id="arCOG00631">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040681_12_1_2"/>
    <dbReference type="OrthoDB" id="65817at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd09836">
        <property type="entry name" value="CBS_pair_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="entry name" value="CBS-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051257">
        <property type="entry name" value="Diverse_CBS-Domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080:SF2">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="CBS-domain pair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="12"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="78"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="130" mass="14168" checksum="25B9584F4A49F14E" modified="2008-05-20" version="1">MVAAARRVADLVKKEPIVALPTETLVEVAEKLATNNIGALVVVNPQNTKKPVGIITERDVVRAISMHMPLSTPVEAFASTDLITIDEDEPVGKAAELMLKYNIRHLIVVNKFGELRGVVSIRDVLRALYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBZ0</accession>
    <name>B1YBZ0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF1122 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0426</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349794.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBZ0"/>
    <dbReference type="GeneID" id="6166250"/>
    <dbReference type="KEGG" id="tne:Tneu_0426"/>
    <dbReference type="eggNOG" id="arCOG01699">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121769_0_0_2"/>
    <dbReference type="OrthoDB" id="26340at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008304">
        <property type="entry name" value="UCP017998"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06557">
        <property type="entry name" value="DUF1122"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="Acyl-CoA N-acyltransferases (Nat)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="165" mass="18799" checksum="A663F4920E54D966" modified="2008-05-20" version="1">MLRDLFNDGAFSFRVWRGRFAEEVNAVVMRGGEVVAYAKIFFGRPPYYGPWAELFNLRVLGTPVEAELYRLFARYMEAGDLLYVEYLDDRETARQLAAGVPPAETRMGRHLESCGFRVVRDWYHPEGWLEGTPKLQAVRLPKPLPEVEPCDYGEGMPGRGGEGHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC56</accession>
    <name>B1YC56_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DNA polymerase sliding clamp</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Proliferating cell nuclear antigen homolog</fullName>
            <shortName evidence="4">PCNA</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">pcn</name>
        <name evidence="7" type="ordered locus">Tneu_1995</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotrimer. The subunits circularize to form a toroid; DNA passes through its center. Replication factor C (RFC) is required to load the toroid on the DNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the PCNA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351329.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC56"/>
    <dbReference type="STRING" id="444157.Tneu_1995"/>
    <dbReference type="GeneID" id="6165868"/>
    <dbReference type="KEGG" id="tne:Tneu_1995"/>
    <dbReference type="eggNOG" id="arCOG00488">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043978_1_0_2"/>
    <dbReference type="OrthoDB" id="14749at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030337">
        <property type="term" value="F:DNA polymerase processivity factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006272">
        <property type="term" value="P:leading strand elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006275">
        <property type="term" value="P:regulation of DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00577">
        <property type="entry name" value="PCNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.70.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00317">
        <property type="entry name" value="DNApol_clamp_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046938">
        <property type="entry name" value="DNA_clamp_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000730">
        <property type="entry name" value="Pr_cel_nuc_antig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022649">
        <property type="entry name" value="Pr_cel_nuc_antig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022648">
        <property type="entry name" value="Pr_cel_nuc_antig_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002221">
        <property type="entry name" value="PRK01115.1-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11352">
        <property type="entry name" value="PROLIFERATING CELL NUCLEAR ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11352:SF0">
        <property type="entry name" value="PROLIFERATING CELL NUCLEAR ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02747">
        <property type="entry name" value="PCNA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00705">
        <property type="entry name" value="PCNA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55979">
        <property type="entry name" value="DNA clamp"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0235">DNA replication</keyword>
    <keyword evidence="3 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Proliferating cell nuclear antigen PCNA N-terminal" evidence="5">
        <location>
            <begin position="18"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="domain" description="Proliferating cell nuclear antigen PCNA C-terminal" evidence="6">
        <location>
            <begin position="135"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="256" mass="28576" checksum="700FC4A1CB104DFE" modified="2008-05-20" version="1">MSVRALFPKGKEPRYAFEVLIKTLPEATLNFSQDGITLKALDPTKTVLFDLTFHAASLEDYVVEEETKVGLIFTAVKDVIKRVGATEKLELEVDRDRNRFSIYVYPKRGKEVGLVRRFSFPIVQVLEEEIPELSASFDAVFEIDSSVFDDTISMIEEVSDWVQITVAPDKVVFRGVGEGGKATETELTSDSESVFNISVADTASSKYSVEMLRDISGKMKSLSKRVKVEMSSNKPLKLTYEFTTGVFSSVVAPRVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC73</accession>
    <name>B1YC73_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0438</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349806.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC73"/>
    <dbReference type="STRING" id="444157.Tneu_0438"/>
    <dbReference type="GeneID" id="6164797"/>
    <dbReference type="KEGG" id="tne:Tneu_0438"/>
    <dbReference type="eggNOG" id="arCOG09838">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1801771_0_0_2"/>
    <dbReference type="OrthoDB" id="378726at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="143" mass="16487" checksum="1ED71F23C948E8CA" modified="2008-05-20" version="1">MKAWVTYGAPDPRDLSQLLGIRLDPERFHKMLRMRLEEELEPVVASILNALGVEAEVEWVPEPASPELPHNLPVDYMERYWAVLGAYVEEVVRHMRLKVYDDAPIASVELGHIIKKDRFYRFDLELILSTALTWASEDSTPGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC98</accession>
    <name>B1YC98_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Polysaccharide biosynthesis protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0464</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349831.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC98"/>
    <dbReference type="STRING" id="444157.Tneu_0464"/>
    <dbReference type="GeneID" id="6166090"/>
    <dbReference type="KEGG" id="tne:Tneu_0464"/>
    <dbReference type="eggNOG" id="arCOG02214">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_653183_0_0_2"/>
    <dbReference type="OrthoDB" id="386882at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="110"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="188"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="217"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="257"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="288"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="331"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="364"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="387"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="420" mass="40992" checksum="B08CF927CA1B2144" modified="2008-05-20" version="1">MERAVKSAAWITAATAATTLSGLVFWSIAARLGGRAGLGAAAYEVAAANVASALLNIGLQSYTLRFVPERGGSALATAYVAAALLSLAGGGALAALGFDWAPLLLASSLFFGAAAGALVASGSSAGYFYSALVGAVLKLALPFAAPPLFAFTAASLASAVAAGIYAAARVGLSRPGGWGDFLAAGLSNYAVNFSVGFAVSLGVVVAGALGNTGQAGVLYLLAMAVLAASSVAGALAQASVPVMVEGGTSLAERGLRAALGVNVPLAVAAAGASPLLMSLLGREYAGEAASLAAAMPAVVELTAVSMASAVYNVERRWGDLAVLGAVGSASVATASALLPPGIALTAGFLPPFLLSLRSLPRRPLAGGLVLTAALAPLAYLLGPVGGLAAAAGAVAVLHISGLFRVGDYARLVKMVLSKAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCA7</accession>
    <name>B1YCA7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP1 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0473</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCA7"/>
    <dbReference type="KEGG" id="tne:Tneu_0473"/>
    <dbReference type="eggNOG" id="arCOG03712">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_118419_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010268">
        <property type="entry name" value="PaREP1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05942">
        <property type="entry name" value="PaREP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="209" mass="23068" checksum="973E5B095CE968A8" modified="2008-05-20" version="1">MDEVDGRALKFLKAVYLFVVSGEVLERPLPKPTGEEYVAVRLLEALVEAGLALEFLRRGLVRNAAGKAFQAWRAYMAALLRLELGKLKAAAKSEEERRWLESTAVPRLPTTKMKKLSQMLEDVGHVGLSFVVDKALDLHDYQYHGPDPDAALSKYTSREEAARDVVALLRELARRVEALKTRVKWTGELERALEEVKGALGGPSGGGVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCC4</accession>
    <name>B1YCC4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0490</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349857.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCC4"/>
    <dbReference type="STRING" id="444157.Tneu_0490"/>
    <dbReference type="GeneID" id="6165914"/>
    <dbReference type="KEGG" id="tne:Tneu_0490"/>
    <dbReference type="eggNOG" id="arCOG05428">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_153631_0_0_2"/>
    <dbReference type="OrthoDB" id="28640at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="116" mass="12865" checksum="EF13EC9FCD6865B1" modified="2008-05-20" version="1">MPLAVGLRLVALRARALRLGVWRFVSPTARALIDATIHYLRRGGRIKSQTLLAALQKAINEVMNLVTPLRQKAIALGRAAARQRGVELDEETALALGLQILNTPGRWRPKITPMWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="97" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCF6</accession>
    <name>B1YCF6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 10">NH(3)-dependent NAD(+) synthetase</fullName>
            <ecNumber evidence="8 10">6.3.1.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">nadE</name>
        <name evidence="12" type="ordered locus">Tneu_0526</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 10">
            <text>deamido-NAD(+) + NH4(+) + ATP = AMP + diphosphate + NAD(+) + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21188"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.1.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from deamido-NAD(+) (ammonia route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 9">Belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.1.5" evidence="8 10"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCF6"/>
    <dbReference type="STRING" id="444157.Tneu_0526"/>
    <dbReference type="KEGG" id="tne:Tneu_0526"/>
    <dbReference type="eggNOG" id="arCOG00069">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059327_1_1_2"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00333"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003952">
        <property type="term" value="F:NAD+ synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008795">
        <property type="term" value="F:NAD+ synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD+ biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00553">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.620:FF:000106">
        <property type="entry name" value="Glutamine-dependent NAD(+) synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00193">
        <property type="entry name" value="NadE_ammonia_dep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003694">
        <property type="entry name" value="NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022926">
        <property type="entry name" value="NH(3)-dep_NAD(+)_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00552">
        <property type="entry name" value="nadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF010587">
        <property type="entry name" value="PRK13980.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23090:SF9">
        <property type="entry name" value="GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23090">
        <property type="entry name" value="NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 8 9" id="KW-0520">NAD</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD/GMP synthase" evidence="11">
        <location>
            <begin position="9"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="29"/>
            <end position="36"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="8">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="8">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="8">
        <location>
            <begin position="243"/>
            <end position="244"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="263" mass="28643" checksum="79E250BDCC4FCB45" modified="2008-05-20" version="1">MDYSSAKSEITAFIHDYVSASGAKGVVVGLSGGVDSSTALALAVEALGADRVVALVLPSRYTPQQDVEDAVSLARQLGVRHFVVQIDQIASAYSSLPFYDEGDQVARGNLMARVRMSILYYYANRYDMLVLGTGDKSELMLGYFTKYGDGGVDLLPIGDLYKTQVRRMAKHLGVPDRIAEKPSAPRLWAGHTAEGELGISYREVDLVLYAHELGLSKDVIPDATGVSRPKVERVLALVAENAHKRAPPVAKLARSRKYTKDLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCG3</accession>
    <name>B1YCG3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0533</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349896.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCG3"/>
    <dbReference type="STRING" id="444157.Tneu_0533"/>
    <dbReference type="GeneID" id="6165808"/>
    <dbReference type="KEGG" id="tne:Tneu_0533"/>
    <dbReference type="eggNOG" id="arCOG03166">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041137_3_0_2"/>
    <dbReference type="OrthoDB" id="24399at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011579">
        <property type="entry name" value="ATPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004256">
        <property type="entry name" value="DUF234"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34704">
        <property type="entry name" value="ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34704:SF1">
        <property type="entry name" value="ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01637">
        <property type="entry name" value="ATPase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03008">
        <property type="entry name" value="DUF234"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="DUF234" evidence="2">
        <location>
            <begin position="298"/>
            <end position="387"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="439" mass="50498" checksum="F94F04C318A4F127" modified="2008-05-20" version="1">MVIFLDREEELEKLRRALRGEGFRLVVVYGRRRIGKTSLVLKATEDMRRVYYLAVGRGNLRRFKQAAARVDPGVLTTADDWEAVFTYLRDRVDVVIIDEFPNLIEEDRSILSTLQAVVDEVLAHSNLKLVLAGSSISTMTSKVLSYKSPLYGRRTASLRVDPIPFLKYRQFFPDRPPHELVEIHGFAGGIPYYMVKVREPFWDFLGRELRERTFLLDEGDFLLRYEFEDVSTYRQILEAIAAGKNTLGEIRDHAGLRSTDITPYLRNLEIVGIVRKVKPVLGRGRYRYELADGFLRFWHRFIGPNLWLIEQGLYGAEDIRREYSQYLGRTFEEIAREVVVREIAAGRLPRVTKLGPQWWTKRGEAREIDLLGVGDGVVVAVEARWRDGVDAAEVAQELREKVEELGLPGRVVPVVVARSFRKREGAAAYDLGDIYRMMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="37" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCK2</accession>
    <name>B1YCK2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0573</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349935.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCK2"/>
    <dbReference type="GeneID" id="6165736"/>
    <dbReference type="KEGG" id="tne:Tneu_0573"/>
    <dbReference type="HOGENOM" id="CLU_1860776_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="137" mass="15334" checksum="35C3231401263F4C" modified="2008-05-20" version="1">MHEFKTGLAYLLLTRAVVEGEVPEECGRADPLALLPVHAGATRFAYAWARIAASTHKYLRDRGAGVLAFTTALIAEYVEWLDELMPELREAVKHLDAELSSAIWLQEGGAGNTCRWFFGGVRRGMQEPKPLPRRRQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCK5</accession>
    <name>B1YCK5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 13">CRISPR-associated exonuclease Cas4</fullName>
            <ecNumber evidence="3 13">3.1.12.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Tneu_0576</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="13">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="13">Mg(2+) or Mn(2+) required for ssDNA cleavage activity.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>iron-sulfur cluster</name>
            <dbReference type="ChEBI" id="CHEBI:30408"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the CRISPR-associated exonuclease Cas4 family.</text>
    </comment>
    <dbReference type="EC" id="3.1.12.1" evidence="3 13"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349938.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCK5"/>
    <dbReference type="STRING" id="444157.Tneu_0576"/>
    <dbReference type="GeneID" id="6165674"/>
    <dbReference type="KEGG" id="tne:Tneu_0576"/>
    <dbReference type="eggNOG" id="arCOG00786">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1507438_0_0_2"/>
    <dbReference type="OrthoDB" id="377640at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051827">
        <property type="entry name" value="Cas4_exonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013343">
        <property type="entry name" value="CRISPR-assoc_prot_Cas4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022765">
        <property type="entry name" value="Dna2/Cas4_DUF83"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00372">
        <property type="entry name" value="cas4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36531">
        <property type="entry name" value="CRISPR-ASSOCIATED EXONUCLEASE CAS4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36531:SF2">
        <property type="entry name" value="CRISPR-ASSOCIATED EXONUCLEASE CAS4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01930">
        <property type="entry name" value="Cas_Cas4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 13" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="8 13" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="7 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9 13" id="KW-0408">Iron</keyword>
    <keyword evidence="10 13" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="12 13" id="KW-0464">Manganese</keyword>
    <keyword evidence="6 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 13" id="KW-0540">Nuclease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF83" evidence="14">
        <location>
            <begin position="16"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU365022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF01930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB39518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="180" mass="20064" checksum="41E4C4B03AFDE187" modified="2008-05-20" version="1">MPKPTSYRPTPWDVLELEWCPRYLWLSKRHGVPTTPSMAKGRQEEQALRKKLAAALGAEPKPVYIDAGWTHGVVDMVARRHSAVPVEIKTGVPRREHKWQLYAEAYLVKAQGHSVSLGVIAYGERLARLQITPAELKVAEALLIKAAEVVEGPPPPPRKTPKCAYCQYRPICSGATNRLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCM4</accession>
    <name>B1YCM4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0598</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349957.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCM4"/>
    <dbReference type="STRING" id="444157.Tneu_0598"/>
    <dbReference type="GeneID" id="6165564"/>
    <dbReference type="KEGG" id="tne:Tneu_0598"/>
    <dbReference type="eggNOG" id="arCOG00373">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_671973_0_0_2"/>
    <dbReference type="OrthoDB" id="28977at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.950">
        <property type="entry name" value="Methyl-accepting chemotaxis protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="211"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="408" mass="46419" checksum="27011E44D01CF581" modified="2008-05-20" version="1">MFRREDAGKKVDEVLAKLSTDITTLSTRIEEVRNEVVAEVKANSLDLKKSVEGLASLLSRISKDLVEGAAQLNKAITQLNASADRASELTAVAERLSASAKAVVDATNQFISVAEKLDGVAGRVESLAEQLNAIKSQSEQIRTVASAMLEMMKDFGAKMQEYEAKIRQLAYKEAELKTREEALRKREGELALALENARKMSELADPTKNALEETRKALALLATRSQELAQKEEELRRLREELLRKEFELKKAEQELAVRQRQLAEQEERAKALVAQASEVEKRLAELAQRERELAEVQAALERKRQELEEMAAKYKTFENAVAKKEEELKRLEEAVRAKETELLDNLGRFAKRLIEEEQKLNEWQRRLLEQERETLAFYRSLLLREAMLAQLKAQLEECRSRLGDKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCP5</accession>
    <name>B1YCP5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0619</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCP5"/>
    <dbReference type="STRING" id="444157.Tneu_0619"/>
    <dbReference type="KEGG" id="tne:Tneu_0619"/>
    <dbReference type="eggNOG" id="arCOG01117">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_170329_2_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050684">
        <property type="entry name" value="HTH-Siroheme_Decarb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43413:SF6">
        <property type="entry name" value="REGULATORY PROTEIN ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43413">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR, ASNC FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="Dimeric alpha+beta barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transcription regulator AsnC/Lrp ligand binding" evidence="2">
        <location>
            <begin position="25"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="99" mass="11246" checksum="D96E5647585332A7" modified="2008-05-20" version="1">MTPQLRQSAIFIKEGLFFHMVEAFVFVNTEIGAEDEVMEALVKIPEVKEAMIVYGPYDLVVRISTDTAENLRKLITEKIRKMSKIKSTTTLIIAKSIVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCR7</accession>
    <name>B1YCR7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Sec-independent protein translocase protein TatC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">tatC</name>
        <name evidence="6" type="ordered locus">Tneu_0641</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Forms a complex with TatA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the TatC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350000.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCR7"/>
    <dbReference type="STRING" id="444157.Tneu_0641"/>
    <dbReference type="GeneID" id="6164745"/>
    <dbReference type="KEGG" id="tne:Tneu_0641"/>
    <dbReference type="eggNOG" id="arCOG01919">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031942_3_2_2"/>
    <dbReference type="OrthoDB" id="15305at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033281">
        <property type="term" value="C:TAT protein transport complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009977">
        <property type="term" value="F:proton motive force dependent protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043953">
        <property type="term" value="P:protein transport by the Tat complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00902">
        <property type="entry name" value="TatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002033">
        <property type="entry name" value="TatC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011532">
        <property type="entry name" value="TatC_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01912">
        <property type="entry name" value="TatC-Arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30371">
        <property type="entry name" value="SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30371:SF0">
        <property type="entry name" value="SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00902">
        <property type="entry name" value="TatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01840">
        <property type="entry name" value="TATCFAMILY"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0811">Translocation</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="24"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="143"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="183"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="224"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="247"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="282" mass="32214" checksum="C38941A0B635BA5E" modified="2008-05-20" version="1">MESKPPRDKEMPLWEHLAELGRRLKRVLIAFVVVFIVMWMPAPNLSGGSLLSVVTSFFVSGEYNPLAYWMFMQSINPLLADLNKTGNVKIALIAGEVWNPLAAVMYASLYLTALVVFPYFVYQMWLYVQPALYPHEERAVKKYLWVALLLFYAGNLFGILIIYPSLFRFVVGLSHVIKVEQIFSVASVVSTWIQIAFWTGLIFETPIVMAILSEICLLNPWTLAEYRPLVYAVALILIAVVTPDTTLISTFLTFIPFAILFEVGLVWSRRIVRRCPDVQPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCR8</accession>
    <name>B1YCR8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0642</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350001.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCR8"/>
    <dbReference type="STRING" id="444157.Tneu_0642"/>
    <dbReference type="GeneID" id="6165292"/>
    <dbReference type="KEGG" id="tne:Tneu_0642"/>
    <dbReference type="eggNOG" id="arCOG05516">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_996117_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="279" mass="30092" checksum="22311230293D1BFF" modified="2008-05-20" version="1">MIQIVDHTTGVHTLGEIDALISPACGSPPPAPRRISFTAVAKAVRSIYGVDIRPALEDQADLGLERLDPVLLYGQLPLEHAWIAKALPHCSVAASCAAPRPDPVTAALSLMSHGVGKIAVDLRGGFERYGVLVAQHAAELGAEVQLIVAVPLRLHGDLVFHSSVPPHLRERYIRAAGDVSVQRGPVELREWRPQATTHAECEKPRFTDALAKIAEILGVGEGVLEDLAAQSVLSHSYVLDLLTPLQLGYLAKWGLVRQLPGGWGATPKFLYLYGLYRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCS3</accession>
    <name>B1YCS3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Saccharopine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0647</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350006.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCS3"/>
    <dbReference type="STRING" id="444157.Tneu_0647"/>
    <dbReference type="GeneID" id="6165310"/>
    <dbReference type="KEGG" id="tne:Tneu_0647"/>
    <dbReference type="eggNOG" id="arCOG00243">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032858_3_0_2"/>
    <dbReference type="OrthoDB" id="27588at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.10">
        <property type="entry name" value="Dihydrodipicolinate Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051168">
        <property type="entry name" value="AASS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032095">
        <property type="entry name" value="Sacchrp_dh-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005097">
        <property type="entry name" value="Sacchrp_dh_NADP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11133:SF22">
        <property type="entry name" value="ALPHA-AMINOADIPIC SEMIALDEHYDE SYNTHASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11133">
        <property type="entry name" value="SACCHAROPINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16653">
        <property type="entry name" value="Sacchrp_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03435">
        <property type="entry name" value="Sacchrp_dh_NADP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55347">
        <property type="entry name" value="Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Saccharopine dehydrogenase NADP binding" evidence="2">
        <location>
            <begin position="3"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="Saccharopine dehydrogenase-like C-terminal" evidence="3">
        <location>
            <begin position="105"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="348" mass="37964" checksum="BB5F2264FDD8D8FB" modified="2008-05-20" version="1">MRVLLLGCGNIGRYIYEKLSARHEVVAVDKAKACPAAVPQDALEIPLGSYDLVVNALPGGVAYKASRRAVEAGIDTIDVSYYGEDPFTLQDVAAKSGARYVPDAGVAPGLSNMLAGRLVAELGYLDELGIYVGGIPEKPVGPLGYSITWSPTDLIEEYVRPARVIRGGRVETVDPLREVERVESPMGPLEAFYTDGLRTLLRTLADRASLMYEKTLRWPGHVEKIRLLKELGFLDEAGEPPPRLITARLLSRLRFNVPDVVYMKVVGAKGARRVQYEVLVRPRGGWSAMQIAAGGVAVATTYVIKELEPGVTPPEHIGMSNKLFPRLLAYIKQEGVTAVQEVVERAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCU2</accession>
    <name>B1YCU2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Peptidase M1 membrane alanine aminopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0666</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350025.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCU2"/>
    <dbReference type="STRING" id="444157.Tneu_0666"/>
    <dbReference type="GeneID" id="6165303"/>
    <dbReference type="KEGG" id="tne:Tneu_0666"/>
    <dbReference type="eggNOG" id="arCOG02969">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014298_0_1_2"/>
    <dbReference type="OrthoDB" id="139771at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005615">
        <property type="term" value="C:extracellular space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042277">
        <property type="term" value="F:peptide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043171">
        <property type="term" value="P:peptide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09603">
        <property type="entry name" value="M1_APN_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.390.10:FF:000013">
        <property type="entry name" value="Aminopeptidase N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="entry name" value="Leucine-rich Repeat Variant"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="entry name" value="Neutral Protease Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1730">
        <property type="entry name" value="tricorn interacting facor f3 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045357">
        <property type="entry name" value="Aminopeptidase_N-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042097">
        <property type="entry name" value="Aminopeptidase_N-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004155">
        <property type="entry name" value="PBS_lyase_HEAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001930">
        <property type="entry name" value="Peptidase_M1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050344">
        <property type="entry name" value="Peptidase_M1_aminopeptidases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014782">
        <property type="entry name" value="Peptidase_M1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027268">
        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11533">
        <property type="entry name" value="PROTEASE M1 ZINC METALLOPROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11533:SF174">
        <property type="entry name" value="PUROMYCIN-SENSITIVE AMINOPEPTIDASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13646">
        <property type="entry name" value="HEAT_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03130">
        <property type="entry name" value="HEAT_PBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01433">
        <property type="entry name" value="Peptidase_M1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17900">
        <property type="entry name" value="Peptidase_M1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00756">
        <property type="entry name" value="ALADIPTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00567">
        <property type="entry name" value="EZ_HEAT"/>
        <property type="match status" value="7"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="ARM repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63737">
        <property type="entry name" value="Leukotriene A4 hydrolase N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55486">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 12" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Aminopeptidase N-like N-terminal" evidence="11">
        <location>
            <begin position="28"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase M1 membrane alanine aminopeptidase" evidence="10">
        <location>
            <begin position="227"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="790"/>
            <end position="817"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="824" mass="95408" checksum="84A8AE7FB108B8B2" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCV0</accession>
    <name>B1YCV0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">TadE family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0674</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350033.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCV0"/>
    <dbReference type="STRING" id="444157.Tneu_0674"/>
    <dbReference type="GeneID" id="6165333"/>
    <dbReference type="KEGG" id="tne:Tneu_0674"/>
    <dbReference type="eggNOG" id="arCOG09812">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2597891_0_0_2"/>
    <dbReference type="OrthoDB" id="29177at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="79" mass="8489" checksum="1D52A298BF8FA031" modified="2008-05-20" version="1">MNALEIALASLLFALCVILEIYIGTLTTALAYEKYVFEATRHAQCKAAANSTGSLVVATCLKLGFNGTFEVIPYNITVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCV1</accession>
    <name>B1YCV1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCV1"/>
    <dbReference type="STRING" id="444157.Tneu_0675"/>
    <dbReference type="KEGG" id="tne:Tneu_0675"/>
    <dbReference type="HOGENOM" id="CLU_3353952_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="36" mass="4197" checksum="52A950FE70D200EC" modified="2008-05-20" version="1">MRLLYHLLLTILAVATLYIAVLAFHQVATLREVFWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCW9</accession>
    <name>B1YCW9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HIT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0693</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350052.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCW9"/>
    <dbReference type="STRING" id="444157.Tneu_0693"/>
    <dbReference type="GeneID" id="6165313"/>
    <dbReference type="KEGG" id="tne:Tneu_0693"/>
    <dbReference type="eggNOG" id="arCOG00419">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_177476_0_0_2"/>
    <dbReference type="OrthoDB" id="26806at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="entry name" value="HIT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052908">
        <property type="entry name" value="AP-4-A_phosphorylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42997:SF1">
        <property type="entry name" value="AP-4-A PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42997">
        <property type="entry name" value="HIT FAMILY HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="HIT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="102" mass="11711" checksum="134A7339BC739753" modified="2008-05-20" version="1">MDPVSSVEVPLRPFNGGHLVVKLSKPIYEMRFEELATLKKKIDSVIQAEKRELRPEGFNIYISDSEIHIIPRWCGDVNVAFFGGMKVIPQSREDLERLAREV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCY0</accession>
    <name>B1YCY0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0704</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350063.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCY0"/>
    <dbReference type="STRING" id="444157.Tneu_0704"/>
    <dbReference type="GeneID" id="6165393"/>
    <dbReference type="KEGG" id="tne:Tneu_0704"/>
    <dbReference type="eggNOG" id="arCOG05529">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2032983_0_0_2"/>
    <dbReference type="OrthoDB" id="26100at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="120" mass="13703" checksum="7154F025AEF13440" modified="2008-05-20" version="1">MADDIDALLRKKALELAKHRLMESAQPQKRELTEAEAVEIVKRITKGDRASEIIENALALYRPHVIPLFKKLAELHTQGVIKELADHELYQILARAGFRVPVKTEVKIVRHGREYKIGES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCZ1</accession>
    <name>B1YCZ1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA helicase</fullName>
            <ecNumber evidence="2">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0715</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the RuvB family.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350074.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCZ1"/>
    <dbReference type="STRING" id="444157.Tneu_0715"/>
    <dbReference type="GeneID" id="6165345"/>
    <dbReference type="KEGG" id="tne:Tneu_0715"/>
    <dbReference type="eggNOG" id="arCOG04081">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028311_1_1_2"/>
    <dbReference type="OrthoDB" id="45425at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.60:FF:000010">
        <property type="entry name" value="RuvB-like helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.50.360:FF:000001">
        <property type="entry name" value="RuvB-like helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.360">
        <property type="entry name" value="RuvB-like helicase, domain II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027238">
        <property type="entry name" value="RuvB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041048">
        <property type="entry name" value="RuvB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042487">
        <property type="entry name" value="RuvBL1/2_DNA/RNA_bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010339">
        <property type="entry name" value="TIP49_P-loop"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11093">
        <property type="entry name" value="RUVB-RELATED REPTIN AND PONTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06068">
        <property type="entry name" value="TIP49"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17856">
        <property type="entry name" value="TIP49_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="7">
        <location>
            <begin position="62"/>
            <end position="360"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="451" mass="50409" checksum="0CFF991EE55BB955" modified="2008-05-20" version="1">MSSIKIEEVRPHAERFAAHSHIRGLGIRNGKVEFSADGFVGQTEAREAAYIVVKMIKEGKFAGKGVLIVGPPGTGKTALALGIARELGPETPFVALSGGEIYSLEVKKSEFLMRALRRAIGIKIREWRRVYEGEVRSVEFRYGRHPYNPYLQRVLGATIKLRTKDDEKTLRVPAEIAQQLIELGVEEGDVIMIDEETGTVSVAGRGEGGEQYDVPARRRVEIPKGPVYKEKEVVRFFTLHEVDMSLARQRGLISAMIFGFAEETKEIPDEVRRQADEIVKKTVEEGKAELVPGVLFIDDAHLLDIETFAFLTRAMETEFAPIIIMATNRGFAKVRGTDIEAPHGIPQDVLDRLVIIKTRPYTAEEIREIVSIKAREQNIALGEDALKLLTSIGVEHSLRYALQLLVPAYIIAKERGRSSVAAEDVEYVRGHFISTKESVEYVKSLEGKFLR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-11-25" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD00</accession>
    <name>RS19_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein uS19</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">30S ribosomal protein S19</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps19</name>
        <name type="ordered locus">Tneu_0724</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS19 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350083.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD00"/>
    <dbReference type="SMR" id="B1YD00"/>
    <dbReference type="STRING" id="444157.Tneu_0724"/>
    <dbReference type="GeneID" id="6165592"/>
    <dbReference type="KEGG" id="tne:Tneu_0724"/>
    <dbReference type="eggNOG" id="arCOG04099">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097347_1_1_2"/>
    <dbReference type="OrthoDB" id="30559at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000028">
        <property type="term" value="P:ribosomal small subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.860.10:FF:000002">
        <property type="entry name" value="40S ribosomal protein S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.860.10">
        <property type="entry name" value="30s Ribosomal Protein S19, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00531">
        <property type="entry name" value="Ribosomal_uS19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002222">
        <property type="entry name" value="Ribosomal_uS19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020934">
        <property type="entry name" value="Ribosomal_uS19_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005713">
        <property type="entry name" value="Ribosomal_uS19_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023575">
        <property type="entry name" value="Ribosomal_uS19_SF"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003121">
        <property type="entry name" value="PRK04038.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01025">
        <property type="entry name" value="uS19_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11880">
        <property type="entry name" value="RIBOSOMAL PROTEIN S19P FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11880:SF2">
        <property type="entry name" value="SMALL RIBOSOMAL SUBUNIT PROTEIN US19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00203">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002144">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00975">
        <property type="entry name" value="RIBOSOMALS19"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54570">
        <property type="entry name" value="Ribosomal protein S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00323">
        <property type="entry name" value="RIBOSOMAL_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_0000354327" description="Small ribosomal subunit protein uS19">
        <location>
            <begin position="1"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="158" mass="18052" checksum="C421394A00B14211" modified="2008-05-20" version="1">MSSKEQEAQKGKQGWITPAVIPPEEWGTFRYRGKTLEELLNLPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVTIKTHSRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKVVQHGEPGLKATRSSLHIAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD14</accession>
    <name>B1YD14_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Myo-inositol-1-phosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0738</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the myo-inositol 1-phosphate synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350097.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD14"/>
    <dbReference type="STRING" id="444157.Tneu_0738"/>
    <dbReference type="GeneID" id="6165174"/>
    <dbReference type="KEGG" id="tne:Tneu_0738"/>
    <dbReference type="eggNOG" id="arCOG04213">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050011_0_0_2"/>
    <dbReference type="OrthoDB" id="80661at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004512">
        <property type="term" value="F:inositol-3-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006021">
        <property type="term" value="P:inositol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.10">
        <property type="entry name" value="Dihydrodipicolinate Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052199">
        <property type="entry name" value="MIPS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002587">
        <property type="entry name" value="Myo-inos-1-P_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013021">
        <property type="entry name" value="Myo-inos-1-P_Synthase_GAPDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43125">
        <property type="entry name" value="INOSITOL-3-PHOSPHATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43125:SF1">
        <property type="entry name" value="INOSITOL-3-PHOSPHATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01658">
        <property type="entry name" value="Inos-1-P_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015578">
        <property type="entry name" value="Myoinos-ppht_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55347">
        <property type="entry name" value="Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Myo-inositol-1-phosphate synthase GAPDH-like" evidence="2">
        <location>
            <begin position="187"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="351" mass="37935" checksum="99FCEE13044B4936" modified="2008-05-20" version="1">MPVRVGIVGVGNCASALVQGIEMYKQNPDLEPIVAFKEIGKYTPRDIVFTSAFEIDARKVGLDLADAIFQPPNNATVVFKPRKLGVTVRPGPALDGVPEGGLVPKIVEGTVDDVVKELNSTNTEVLVNYLPTGAKKAAEAYAEAALRAGVAFVNAMPAPIATSELWQRKFAERNLPLLGDDTQNQIGATVFHKTLVRLLAIRGVRIKHTYQINVGGTPDFVNLMYRRGDKEKTKTAAVKMMAGGQEFGAYISPVAYIEFLGDRKIAHTLIEAEIFGGLSIRIEATLDVHDAWNSAAVVTDSVRLAKLALDRGVGGPLISASAWGFKNPPVHMSPDEAYRAVVEFIEGKRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD31</accession>
    <name>B1YD31_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribonuclease H</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0755</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350114.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD31"/>
    <dbReference type="STRING" id="444157.Tneu_0755"/>
    <dbReference type="GeneID" id="6164416"/>
    <dbReference type="KEGG" id="tne:Tneu_0755"/>
    <dbReference type="eggNOG" id="arCOG02942">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_095977_0_0_2"/>
    <dbReference type="OrthoDB" id="52651at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09279">
        <property type="entry name" value="RNase_HI_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053576">
        <property type="entry name" value="RNase_HI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041175">
        <property type="entry name" value="RNAseHI_Thmprot"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46387">
        <property type="entry name" value="POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46387:SF2">
        <property type="entry name" value="RIBONUCLEASE HI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13456">
        <property type="entry name" value="RVT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="1">
        <location>
            <begin position="1"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="187" mass="21066" checksum="C7FF67D03A7E3CAA" modified="2008-05-20" version="1">MCIDLFFDGACEPVNPGGVGSYGFAAFKNGEEIHGEGGVVCAGERWCTNNYAEYMGLIRGLEWALAAGESCVNVYGDSQLVVRQMLGVYQVKAEHLKPLYKRAVELSQRFAKFSIGWVPRERNARADYYSKKAYCDFLKTHPELRGRYAAWLATERQRALLGRLGIEADCLSKREASKLIERALKRR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD56</accession>
    <name>AROC_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chorismate synthase</fullName>
            <shortName evidence="1">CS</shortName>
            <ecNumber evidence="1">4.2.3.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">5-enolpyruvylshikimate-3-phosphate phospholyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">aroC</name>
        <name type="ordered locus">Tneu_0780</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>5-O-(1-carboxyvinyl)-3-phosphoshikimate = chorismate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21020"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57701"/>
            <dbReference type="EC" id="4.2.3.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMNH2</name>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
        </cofactor>
        <text evidence="1">Reduced FMN (FMNH(2)).</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 7/7.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the chorismate synthase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.5" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350139.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD56"/>
    <dbReference type="SMR" id="B1YD56"/>
    <dbReference type="STRING" id="444157.Tneu_0780"/>
    <dbReference type="GeneID" id="6164324"/>
    <dbReference type="KEGG" id="tne:Tneu_0780"/>
    <dbReference type="eggNOG" id="arCOG04133">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034547_0_0_2"/>
    <dbReference type="OrthoDB" id="33049at2157"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004107">
        <property type="term" value="F:chorismate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07304">
        <property type="entry name" value="Chorismate_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.150.10">
        <property type="entry name" value="Chorismate synthase AroC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00300">
        <property type="entry name" value="Chorismate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000453">
        <property type="entry name" value="Chorismate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035904">
        <property type="entry name" value="Chorismate_synth_AroC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020541">
        <property type="entry name" value="Chorismate_synthase_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00033">
        <property type="entry name" value="aroC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003793">
        <property type="entry name" value="PRK05382.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21085">
        <property type="entry name" value="CHORISMATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21085:SF0">
        <property type="entry name" value="CHORISMATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01264">
        <property type="entry name" value="Chorismate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001456">
        <property type="entry name" value="Chorismate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103263">
        <property type="entry name" value="Chorismate synthase, AroC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00787">
        <property type="entry name" value="CHORISMATE_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00788">
        <property type="entry name" value="CHORISMATE_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword id="KW-0274">FAD</keyword>
    <keyword id="KW-0285">Flavoprotein</keyword>
    <keyword id="KW-0288">FMN</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-0521">NADP</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000115410" description="Chorismate synthase">
        <location>
            <begin position="1"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="124"/>
            <end position="126"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="284"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="299"/>
            <end position="303"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="326"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00300"/>
        </source>
    </evidence>
    <sequence length="365" mass="39486" checksum="66B6130788F7A56F" modified="2008-05-20" version="1">MNTFGRELRITTFGESHGKAIGVVIDGVPAGLELTEEDIKRELERRMFCHIPVLNPRCEPEEVEILSGVKEGYTQGTPIAVVIWNRRVISSYYEELWMKPRPGHADFAYYLKYGRHYDHRGGGRASGRTTAAVVAAGAVAKKMLALAGAEVAGHIVELGGVEINASYTYEDVKKSWGRPLPVVDQQALDKMLEKIREAAMRGDSIGGGVEVWAVGVPPGLGEPHFGKIKADIAAAAFSIPGAIALDWGMGRALAKMWGSEANDPITVANGRPTLATNKIGGVLGGITVGTPIYFRAWFKPTPSVRKPQQTVDLAKMEPTTIEFKGRYDVSIVPKALVALEAITAVALADHLLRAGLIRRDKPLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD61</accession>
    <name>B1YD61_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Alcohol dehydrogenase GroES domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0785</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350144.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD61"/>
    <dbReference type="STRING" id="444157.Tneu_0785"/>
    <dbReference type="GeneID" id="6164554"/>
    <dbReference type="KEGG" id="tne:Tneu_0785"/>
    <dbReference type="eggNOG" id="arCOG01455">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026673_3_4_2"/>
    <dbReference type="OrthoDB" id="8709at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004022">
        <property type="term" value="F:alcohol dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.180.10">
        <property type="entry name" value="Medium-chain alcohol dehydrogenases, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002364">
        <property type="entry name" value="Quin_OxRdtase/zeta-crystal_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF010344">
        <property type="entry name" value="PRK13771.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42940">
        <property type="entry name" value="ALCOHOL DEHYDROGENASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42940:SF8">
        <property type="entry name" value="VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="GroES-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01162">
        <property type="entry name" value="QOR_ZETA_CRYSTAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Enoyl reductase (ER)" evidence="7">
        <location>
            <begin position="10"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="331" mass="35102" checksum="343B63E12628A00E" modified="2008-05-20" version="1">MRGYLLGKFGEPPALVELEKPRAAPGRVVVKVAAAGVCYRDFLTWRGLQRARLPVVPGHEFAGVVEEVGEGVAEFKPGDAVAGMMYEYCGVCENCRSGREYLCRSRRIYGEDLHGAFAEYISVDRKSLVKIPPGVPLEAASFAACVLSTVVRGVRKIGVAPGMRVLVTGAGGGVGIHAVQIAKAYGAKVIAVTSPSKAEAVGKYADYVISEKAFSEEVKKLGGADGAVEAVGGPTLEQTVRSLNWGARVALIGNVDPQPAPLPLGLLILKEVEILPVIQGGRRDLEEALRLLASGAVKPVYTVHSFSELPKLIAETPNATHIGRRVVKIDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD62</accession>
    <name>B1YD62_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NAD-dependent epimerase/dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0786</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350145.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD62"/>
    <dbReference type="STRING" id="444157.Tneu_0786"/>
    <dbReference type="GeneID" id="6164473"/>
    <dbReference type="KEGG" id="tne:Tneu_0786"/>
    <dbReference type="eggNOG" id="arCOG01369">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007383_1_7_2"/>
    <dbReference type="OrthoDB" id="4907at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.25.10">
        <property type="entry name" value="UDP-galactose 4-epimerase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43725:SF53">
        <property type="entry name" value="UDP-ARABINOSE 4-EPIMERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43725">
        <property type="entry name" value="UDP-GLUCOSE 4-EPIMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD-dependent epimerase/dehydratase" evidence="2">
        <location>
            <begin position="3"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="308" mass="33702" checksum="08868D5D7FF91328" modified="2008-05-20" version="1">MKVLVTGGAGFIGSHLVDRLVEEGYEVIVVDNLSTGRRENVNPQAWLHVADLKDPDWAVGVSADVVFHFAANPEVRAEPRVHFEENVVATFNVLEWARVSGVKTVVFASSSTVYGDARVMPTPEDYPLEPVSVYGAAKAAGEVMCATYARLYGVRCLALRYANVVGPRLRHGALYDFLMKLRKKPEELEVLGDGTQRKSYLHVEEAVEATLRAWRKFEEVGEPYLALNVGNVDSLTVLDVAGLVAEVMGVAPVIKAGGASSDCRSSYLSVEKISKLAGWRPRLSSADSVRRAVRELLEELESRRGSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD71</accession>
    <name>B1YD71_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0795</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350154.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD71"/>
    <dbReference type="STRING" id="444157.Tneu_0795"/>
    <dbReference type="GeneID" id="6164310"/>
    <dbReference type="KEGG" id="tne:Tneu_0795"/>
    <dbReference type="eggNOG" id="arCOG01167">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001681_2_0_2"/>
    <dbReference type="OrthoDB" id="57164at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.50">
        <property type="entry name" value="Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.365.10">
        <property type="entry name" value="Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_MoCoBD1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046867">
        <property type="entry name" value="AldOxase/xan_DH_MoCoBD2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053554">
        <property type="entry name" value="Glyceraldehyde_dh-related"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041018">
        <property type="entry name" value="glyceraldDH_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908:SF132">
        <property type="entry name" value="ALDEHYDE OXIDASE 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="XANTHINE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01315">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="MoCoBD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20256">
        <property type="entry name" value="MoCoBD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="CO dehydrogenase molybdoprotein N-domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="Molybdenum cofactor-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldehyde oxidase/xanthine dehydrogenase a/b hammerhead" evidence="3">
        <location>
            <begin position="18"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="724" mass="78527" checksum="BD671DDBB424F30A" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD91</accession>
    <name>B1YD91_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0816</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD91"/>
    <dbReference type="STRING" id="444157.Tneu_0816"/>
    <dbReference type="KEGG" id="tne:Tneu_0816"/>
    <dbReference type="eggNOG" id="arCOG05550">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2044499_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="117" mass="13690" checksum="77D169675E7EC7AD" modified="2008-05-20" version="1">MRELRRYWAQFENSDIAKAYRGEVDKFERWVREVGTRLIALRVREAAERGNPVARDYPEEYAKGLIRRGQGKVLVNMFAAYLVQRGLATQYWLIKNKFVAGGESIATWLRLLRKLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDD9</accession>
    <name>B1YDD9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0865</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350222.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDD9"/>
    <dbReference type="STRING" id="444157.Tneu_0865"/>
    <dbReference type="GeneID" id="6164344"/>
    <dbReference type="KEGG" id="tne:Tneu_0865"/>
    <dbReference type="eggNOG" id="arCOG03774">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1017875_0_0_2"/>
    <dbReference type="OrthoDB" id="28178at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="278" mass="30399" checksum="433E906EC71E12F3" modified="2008-05-20" version="1">MIPRDDIIAGVASTPLLSLLSELEEVKPSQRIRPLFDFLAEVGLMQRKGDKYRRASLPSRGELSPLAEAVSTLFQNLVFPYVAAGRRAGRLSPELQRALYVYTSAFQALRVTVAQELMSYGGLTLVAGWFPCGFSSELMSIAGRDLVIVEEREDVVALEVDRLSLLPIASGPLGQELAPASFYAFETLPLAGLGEVAEKYGVFDAAVVCHRGADLALLQKIAREVYYIVIRDRQLSYLATAIVEALGLAGNREEPPRRAQREEVGPFDVYILRGAGPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDH8</accession>
    <name>B1YDH8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0904</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350261.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDH8"/>
    <dbReference type="STRING" id="444157.Tneu_0904"/>
    <dbReference type="GeneID" id="6164343"/>
    <dbReference type="KEGG" id="tne:Tneu_0904"/>
    <dbReference type="eggNOG" id="arCOG05706">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1375587_0_0_2"/>
    <dbReference type="OrthoDB" id="111592at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050228">
        <property type="entry name" value="Carboxylesterase_BioH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000801">
        <property type="entry name" value="Esterase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43194">
        <property type="entry name" value="HYDROLASE ALPHA/BETA FOLD FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43194:SF2">
        <property type="entry name" value="PEROXISOMAL MEMBRANE PROTEIN LPX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00756">
        <property type="entry name" value="Esterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="196" mass="21131" checksum="A4BDF102E1D1B4B9" modified="2008-05-20" version="1">MSKALAFHGYRSSPSNIQWLTRPLADAGFDVVTPHVREVEDGYEAGLRELPAAVAAGHSMGGTVALLLAARNPGAVKCVVAVAAPVDRRLQMQYMLQSGDAYLRRLANELASLGSKLDQTSPSRFIGPGMPPVLYIRGTEDRVVPRTHVDILAGLSDKFNFPLEVVEVPGMGHSPQGEELQGRVASAVLKFVERCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDL2</accession>
    <name>B1YDL2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0938</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350295.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDL2"/>
    <dbReference type="STRING" id="444157.Tneu_0938"/>
    <dbReference type="GeneID" id="6164408"/>
    <dbReference type="KEGG" id="tne:Tneu_0938"/>
    <dbReference type="eggNOG" id="arCOG05712">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1493025_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="175" mass="18385" checksum="6A6947DA9292FDCC" modified="2008-05-20" version="1">MLFLADLAAAALALYVGFEVYRAWRSLRDRRLSLYSLGMALLAAALVLEALLDIYLGLSRGPARHVAREAALLRAGVDVLLLAALASIAAAVTPAIFYSAALLLGPLDAALAIYIAAVMFVKAAERRTPPFTPLAFVALAASIVLPPPAAPPLRLLTALFLALGVWLGRGAQGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDN5</accession>
    <name>B1YDN5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator of molybdate metabolism, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0963</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350318.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDN5"/>
    <dbReference type="STRING" id="444157.Tneu_0963"/>
    <dbReference type="GeneID" id="6164541"/>
    <dbReference type="KEGG" id="tne:Tneu_0963"/>
    <dbReference type="eggNOG" id="arCOG00230">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064037_1_0_2"/>
    <dbReference type="OrthoDB" id="31371at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="LysR_HTH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051815">
        <property type="entry name" value="Molybdate_resp_trans_reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30432:SF1">
        <property type="entry name" value="DNA-BINDING TRANSCRIPTIONAL DUAL REGULATOR MODE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30432">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR MODE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12727">
        <property type="entry name" value="PBP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="1">
        <location>
            <begin position="21"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="PBP" evidence="2">
        <location>
            <begin position="120"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="297" mass="31627" checksum="0C0E104ADE7A7EAF" modified="2008-05-20" version="1">MRFVAELKAVVGGAELGAEVFKALLAIDMTASMKRAAQALGMPYTTLWNLVARAERAMGARLVEASRRGGTRLTEAGRRALRLYMAEAARRGIVLGLSPLIYAGSHDPAVEEALRGGEAYFVGSLQGLLMVAGGLAHFGGVHLGDNLQAVAAYAPHLCLVRGFRREVGVAARRPIADLTQLANMRLVNRPPGAGTRAHIDRLLRQLGVSPREAPGYGDVAQTHDEAAARVAAGEADYTVTTRAAAERHGLHFVRLWEEDFDFVCRPEACGEASRFAAGLRLGPGSRPRGDAGQVVCP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDP4</accession>
    <name>KHSE_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Homoserine kinase</fullName>
            <shortName evidence="1">HK</shortName>
            <shortName evidence="1">HSK</shortName>
            <ecNumber evidence="1">2.7.1.39</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">thrB</name>
        <name type="ordered locus">Tneu_0972</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-homoserine + ATP = O-phospho-L-homoserine + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13985"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
            <dbReference type="ChEBI" id="CHEBI:57590"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.39"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 4/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GHMP kinase family. Homoserine kinase subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.39" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350327.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDP4"/>
    <dbReference type="SMR" id="B1YDP4"/>
    <dbReference type="STRING" id="444157.Tneu_0972"/>
    <dbReference type="GeneID" id="6164462"/>
    <dbReference type="KEGG" id="tne:Tneu_0972"/>
    <dbReference type="eggNOG" id="arCOG01027">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041243_1_1_2"/>
    <dbReference type="OrthoDB" id="28273at2157"/>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004413">
        <property type="term" value="F:homoserine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.890">
        <property type="entry name" value="GHMP kinase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00384">
        <property type="entry name" value="Homoser_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013750">
        <property type="entry name" value="GHMP_kinase_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036554">
        <property type="entry name" value="GHMP_kinase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006203">
        <property type="entry name" value="GHMP_knse_ATP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000870">
        <property type="entry name" value="Homoserine_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribsml_uS5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002288">
        <property type="entry name" value="PRK01212.1-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20861:SF1">
        <property type="entry name" value="HOMOSERINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20861">
        <property type="entry name" value="HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08544">
        <property type="entry name" value="GHMP_kinases_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000676">
        <property type="entry name" value="Homoser_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00958">
        <property type="entry name" value="HOMSERKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55060">
        <property type="entry name" value="GHMP Kinase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00627">
        <property type="entry name" value="GHMP_KINASES_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0418">Kinase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0791">Threonine biosynthesis</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000122448" description="Homoserine kinase">
        <location>
            <begin position="1"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="79"/>
            <end position="89"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00384"/>
        </source>
    </evidence>
    <sequence length="297" mass="30844" checksum="C1FCD1553BC9E719" modified="2008-05-20" version="1">MRAPSTSANLGSGFDVVAVAHDAYFAEAYVKLTSGCGVDIKFRGFDPGGDNTVRRAFQHLFERLGRCWGVEAEVDNRIPIARGLGSSGASAVAALAAFIREAGLRVDPAAVVEAAGLGEAAAAGSPHFDNVAAAALGGAVVIASVKPLELVKFSPRLTFVVGVPDVPPMPEKTKVMRSVLPREVPFRTYVAQLARVSALVAGFARSDPRLVALGMSDEVVEPARAPHVPAYARVRRYALEAGALAVAISGAGPSMIALVEDRDSGAVRAAVERAYAEEGLRAEVKVASTAEGALKDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDQ6</accession>
    <name>B1YDQ6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0986</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350339.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDQ6"/>
    <dbReference type="STRING" id="444157.Tneu_0986"/>
    <dbReference type="GeneID" id="6164733"/>
    <dbReference type="KEGG" id="tne:Tneu_0986"/>
    <dbReference type="eggNOG" id="arCOG12856">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1965654_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="127" mass="14049" checksum="4E7D49B5DAF21264" modified="2008-05-20" version="1">MRLLLLLLYILAFSLVVAHYYQQAELRATAKTGSWSFYIAQAELDKKCKGTVEVAGDKVTVTIYGCKKAKVDVYIESRATVPLCLEPHGPVEGKARVRLSPGEGKWQTYVFTDNGTLTFTKGIGSCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDQ9</accession>
    <name>B1YDQ9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HEPN domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0989</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350342.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDQ9"/>
    <dbReference type="STRING" id="444157.Tneu_0989"/>
    <dbReference type="GeneID" id="6164752"/>
    <dbReference type="KEGG" id="tne:Tneu_0989"/>
    <dbReference type="eggNOG" id="arCOG01191">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_123170_2_1_2"/>
    <dbReference type="OrthoDB" id="359241at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.330">
        <property type="entry name" value="Nucleotidyltransferases domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007842">
        <property type="entry name" value="HEPN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05168">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00748">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81593">
        <property type="entry name" value="Nucleotidyltransferase substrate binding subunit/domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50910">
        <property type="entry name" value="HEPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HEPN" evidence="1">
        <location>
            <begin position="9"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="136" mass="15103" checksum="1DF767899F864ACB" modified="2008-05-20" version="1">MVSRARDWFRQALRDLEHARRSLEFGDYEWACFAAHQAAEKAVKALYQCLGVEAWGHSVSRLLAGLPAHVKPPGDLVDEAKGLDKFYIPSRYPNAHPEGAPMDYFTRGDAEGAVNAAERIVRYVGEALQTRCGEGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDT7</accession>
    <name>B1YDT7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1018</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350370.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDT7"/>
    <dbReference type="GeneID" id="6164934"/>
    <dbReference type="KEGG" id="tne:Tneu_1018"/>
    <dbReference type="eggNOG" id="arCOG03768">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1227700_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="154"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="192" mass="19510" checksum="B7305E48D2E83E3C" modified="2008-05-20" version="1">MVGVEALGRGFLLLSLSTASTLAGFAAGVAGAVPAAAAFFTAAVVLALAALALYLRRGFAELKAVDSGFALSHLGVKLMLYSLAAIGASIAISGAYQGDPPTLSRDLNTPRGAAGLAALALLLASLPLGLAGYALVFILGALRLYDRFKDRRMLAAGLLYAADIAALAIKAGGALTLAGHLIMYLALRRRKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDU7</accession>
    <name>B1YDU7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Band 7 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1029</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDU7"/>
    <dbReference type="STRING" id="444157.Tneu_1029"/>
    <dbReference type="KEGG" id="tne:Tneu_1029"/>
    <dbReference type="eggNOG" id="arCOG01915">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_846241_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03401">
        <property type="entry name" value="SPFH_prohibitin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="entry name" value="Band 7 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050710">
        <property type="entry name" value="Band7/mec-2_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000163">
        <property type="entry name" value="Prohibitin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43327">
        <property type="entry name" value="STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43327:SF10">
        <property type="entry name" value="STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="Band 7/SPFH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Band 7" evidence="1">
        <location>
            <begin position="44"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="340" mass="36845" checksum="7218C26F8A0CCE21" modified="2008-05-20" version="1">MWPPGAMAYIPVEVGRPPKIPKRAAAAFAVASVALVAAAVVLALSVYTLPAGVVAVVVDPVSGTISKPVIGPALGFKAPWAYVIKDTYAIEVIEFVQRERASGRWTFTAPEVLTKDGVTVTVEMVIRYRIKPERFDEIVKKFPAVDYDDKVLVPKARQLIRDVISKVSLDYLIENRDVIAKQIEQQYREAIERDPAVAGLVDVLDVNVLNFILPQQVTDAINRKVAAQQDAIRAQFERQRVEELARANYTRTVLAALAEANATVARARAQAMQITLVANATRGAIEMIIRAAGANATEAARLAELYLYLSGLKEVAQAGNVQIVAISGGGAQIVPVVPIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDX5</accession>
    <name>B1YDX5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1057</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350407.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDX5"/>
    <dbReference type="STRING" id="444157.Tneu_1057"/>
    <dbReference type="GeneID" id="6166317"/>
    <dbReference type="KEGG" id="tne:Tneu_1057"/>
    <dbReference type="eggNOG" id="arCOG07510">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_198716_0_0_2"/>
    <dbReference type="OrthoDB" id="24778at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="68" mass="7465" checksum="706FC913643482F6" modified="2008-05-20" version="1">MPESFEAALKAAEVQYARVRRDIEDLLGVMPEAADGLSSLYEAAEDYTCFTAKKLLGRRDKGAARSVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDZ1</accession>
    <name>B1YDZ1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional activator, TenA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1073</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350423.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDZ1"/>
    <dbReference type="STRING" id="444157.Tneu_1073"/>
    <dbReference type="GeneID" id="6164409"/>
    <dbReference type="KEGG" id="tne:Tneu_1073"/>
    <dbReference type="eggNOG" id="arCOG01129">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108435_0_0_2"/>
    <dbReference type="OrthoDB" id="42133at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.910.10">
        <property type="entry name" value="Heme oxygenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016084">
        <property type="entry name" value="Haem_Oase-like_multi-hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004305">
        <property type="entry name" value="Thiaminase-2/PQQC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03070">
        <property type="entry name" value="TENA_THI-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48613">
        <property type="entry name" value="Heme oxygenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiaminase-2/PQQC" evidence="1">
        <location>
            <begin position="25"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="196" mass="22445" checksum="EB3E3C7C980DB8D1" modified="2008-05-20" version="1">MRVIETLRRELEPLNREILAAAKPSREALRRFVANQLYIVPHDLKALSAAMAKAREPDEYRLAKMLIDGDWEALKAFWELAAELGVEFSWDLLDPTAVAYTHFLSWLALNGTMGDLAVAAAVNLPVWGQNCAAFAAWARQNGVRNTRFMDLFAGPYTELEELAEGVAQRHLDWPRYRFVAKAIQRYELDFWRAISY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE09</accession>
    <name>B1YE09_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1091</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350441.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE09"/>
    <dbReference type="STRING" id="444157.Tneu_1091"/>
    <dbReference type="GeneID" id="6165495"/>
    <dbReference type="KEGG" id="tne:Tneu_1091"/>
    <dbReference type="eggNOG" id="arCOG00205">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_11_2"/>
    <dbReference type="OrthoDB" id="24644at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050153">
        <property type="entry name" value="Metal_Ion_Import_ABC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42734:SF20">
        <property type="entry name" value="ABC-TYPE IRON(III)-SIDEROPHORE TRANSPORT SYSTEM, ATPASE COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42734">
        <property type="entry name" value="METAL TRANSPORT SYSTEM ATP-BINDING PROTEIN TM_0124-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="218" mass="23647" checksum="947F98A0C9448F8E" modified="2008-05-20" version="1">MYVEFDVEKRLGGFLLRASGRLEPGVTCVVGPNGSGKTTLLKILAGLLKPDGGWVKYVGVSSRVYVGDLHVPPDAPAGEVVLSGRSRFSPRPVERGDVEAARRYMEALGVLGLAGRRWSTLSGGERQRFVIAAALASEADLLLLDEPLSNLHGDWRGRAMRVLGEYSSGRIVVVTTHHLDVLGCCRWVYALREGSVAWRGEASGYRPEVEEACRGTKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE24</accession>
    <name>B1YE24_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATPase AAA-type core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1106</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350456.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE24"/>
    <dbReference type="STRING" id="444157.Tneu_1106"/>
    <dbReference type="GeneID" id="6165621"/>
    <dbReference type="KEGG" id="tne:Tneu_1106"/>
    <dbReference type="eggNOG" id="arCOG03239">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052977_0_0_2"/>
    <dbReference type="OrthoDB" id="25344at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000731">
        <property type="term" value="P:DNA synthesis involved in DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006302">
        <property type="term" value="P:double-strand break repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32182:SF22">
        <property type="entry name" value="ATP-DEPENDENT ENDONUCLEASE, OLD FAMILY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32182">
        <property type="entry name" value="DNA REPLICATION AND REPAIR PROTEIN RECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13304">
        <property type="entry name" value="AAA_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase AAA-type core" evidence="1">
        <location>
            <begin position="218"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="372" mass="40897" checksum="7F81C24273D7BFE9" modified="2008-05-20" version="1">MRVAIRDFKSVAHAELEIAPLTILIGPPAGGKSNILDALAVLGYPARLLRLDEEYGGAKNALEPLGLVARYTDPRALFRNYDLTKTPTVETPKYSVSIHYRRGLQVKAGDATAEINMEHLTGEGDLAPLQDILVETRLYGYDRYGLPATGCRQGHCGFYDYLTTQVRFTPHNILSDLGWNIRRVIRYTPDVVREINEALSERLGEKIELKVSKDGAIAIYDYDYEVTSPSVSEALFRLIYYLAALRSAASYAKLHGLEGRLVAALEEPEAHIFPFLLDLLADHIAQAASTVHVVLATHNPLLVSALWDRAAGVKTYYIHRDKHGATTAAEIDIEKMAQDLATAEDIMLTPPAEILAKYAKSPATPSATPTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE26</accession>
    <name>B1YE26_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1108</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350458.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE26"/>
    <dbReference type="GeneID" id="58787337"/>
    <dbReference type="KEGG" id="tne:Tneu_1108"/>
    <dbReference type="eggNOG" id="arCOG08176">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_300474_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="996" mass="112874" checksum="B9F5DAFACC618F4A" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE59</accession>
    <name>B1YE59_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 14">CRISPR-associated exonuclease Cas4</fullName>
            <ecNumber evidence="4 14">3.1.12.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ordered locus">Tneu_1142</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="14">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="14">Mg(2+) or Mn(2+) required for ssDNA cleavage activity.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>iron-sulfur cluster</name>
            <dbReference type="ChEBI" id="CHEBI:30408"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the CRISPR-associated exonuclease Cas4 family.</text>
    </comment>
    <dbReference type="EC" id="3.1.12.1" evidence="4 14"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350491.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE59"/>
    <dbReference type="STRING" id="444157.Tneu_1142"/>
    <dbReference type="GeneID" id="6165811"/>
    <dbReference type="KEGG" id="tne:Tneu_1142"/>
    <dbReference type="eggNOG" id="arCOG00786">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102055_2_0_2"/>
    <dbReference type="OrthoDB" id="26676at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051827">
        <property type="entry name" value="Cas4_exonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013343">
        <property type="entry name" value="CRISPR-assoc_prot_Cas4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022765">
        <property type="entry name" value="Dna2/Cas4_DUF83"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00372">
        <property type="entry name" value="cas4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36531">
        <property type="entry name" value="CRISPR-ASSOCIATED EXONUCLEASE CAS4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36531:SF6">
        <property type="entry name" value="DNA REPLICATION ATP-DEPENDENT HELICASE_NUCLEASE DNA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01930">
        <property type="entry name" value="Cas_Cas4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12 14" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="9 14" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="8 14" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10 14" id="KW-0408">Iron</keyword>
    <keyword evidence="11 14" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="13 14" id="KW-0464">Manganese</keyword>
    <keyword evidence="7 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 14" id="KW-0540">Nuclease</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF83" evidence="15">
        <location>
            <begin position="8"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU365022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF01930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ACB40072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="190" mass="21114" checksum="DED29050B0C7361A" modified="2008-05-20" version="1">MQPCINPSLIRQYLYCPMAAYYTATGAPEPPTLRMQKGRELQQEAAQAAAKALGAQKAEYAVHIAAPPLCGTVDAVLWINGRPSPLEVKAAARPRRIPIHHKAQAAAYTAMVQKRYGKAVTTAYIYYAESGHIAHIHITKDLQELLNYAVSRLQQILQGKPPVLNPNPAKCQNCWYRKWCSHLPTTVEKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8J9</accession>
    <name>B1Y8J9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1148</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350497.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8J9"/>
    <dbReference type="STRING" id="444157.Tneu_1148"/>
    <dbReference type="GeneID" id="6165915"/>
    <dbReference type="KEGG" id="tne:Tneu_1148"/>
    <dbReference type="eggNOG" id="arCOG04008">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1821117_0_0_2"/>
    <dbReference type="OrthoDB" id="380092at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="141" mass="16208" checksum="FF7447902F9AC756" modified="2008-05-20" version="1">MPRSYFYEIYRAFKEDRYEDGLNSASRYRTYVTAAAFRKIYNSIVKPLEHIAAGRFTDPIPIAAGLARLDVIIEYQKNRGLLQQDLAEGIKAALAEIRQDVVRRNLQSAKKEAEALKLALDAVLAYQIVGGRRREEEEEWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8M9</accession>
    <name>B1Y8M9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">anthranilate synthase</fullName>
            <ecNumber evidence="2">4.1.3.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1179</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>chorismate + L-glutamine = anthranilate + pyruvate + L-glutamate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21732"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="4.1.3.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 1/5.</text>
    </comment>
    <dbReference type="EC" id="4.1.3.27" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350527.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8M9"/>
    <dbReference type="STRING" id="444157.Tneu_1179"/>
    <dbReference type="MEROPS" id="C26.A25"/>
    <dbReference type="GeneID" id="6165159"/>
    <dbReference type="KEGG" id="tne:Tneu_1179"/>
    <dbReference type="eggNOG" id="arCOG00086">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014340_1_2_2"/>
    <dbReference type="OrthoDB" id="3321at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004049">
        <property type="term" value="F:anthranilate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:L-tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01743">
        <property type="entry name" value="GATase1_Anthranilate_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.880:FF:000003">
        <property type="entry name" value="Anthranilate synthase component II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050472">
        <property type="entry name" value="Anth_synth/Amidotransfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006221">
        <property type="entry name" value="TrpG/PapA_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00566">
        <property type="entry name" value="trpG_papA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43418:SF4">
        <property type="entry name" value="MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43418">
        <property type="entry name" value="MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00097">
        <property type="entry name" value="ANTSNTHASEII"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00099">
        <property type="entry name" value="CPSGATASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00096">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="Class I glutamine amidotransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51273">
        <property type="entry name" value="GATASE_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="4 8" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="Glutamine amidotransferase" evidence="7">
        <location>
            <begin position="5"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00047683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="193" mass="21417" checksum="D331D0D92094109B" modified="2008-05-20" version="1">MDLTLIVDNYDSFVYNIAHYVGELGSRPLVLRNDEVTVKIVERIRPDRIIISPGPGHPANPRDVGNSPDIVREFSGRIPILGVCLGHQIIGHVFGAKIRRAKTIKHGKTSQVRHLGGPLYRGVPEVFQAARYHSLVVDELPQVLVAEAYSLDDGEVMGLRHVEHPVYGVQFHPESVATPLGKRILKNFLDLAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8P0</accession>
    <name>B1Y8P0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Type III restriction protein res subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1191</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350538.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8P0"/>
    <dbReference type="STRING" id="444157.Tneu_1191"/>
    <dbReference type="GeneID" id="6166255"/>
    <dbReference type="KEGG" id="tne:Tneu_1191"/>
    <dbReference type="eggNOG" id="arCOG00874">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008213_6_0_2"/>
    <dbReference type="OrthoDB" id="11644at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140097">
        <property type="term" value="F:catalytic activity, acting on DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd17926">
        <property type="entry name" value="DEXHc_RE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1170.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050615">
        <property type="entry name" value="ATP-dep_DNA_Helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040699">
        <property type="entry name" value="XPB_DRD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11274:SF0">
        <property type="entry name" value="GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11274">
        <property type="entry name" value="RAD25/XP-B DNA REPAIR HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18458">
        <property type="entry name" value="XPB_DRD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="5">
        <location>
            <begin position="86"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="6">
        <location>
            <begin position="320"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="451" mass="51131" checksum="BA1130B3C4A1F933" modified="2008-05-20" version="1">MGLTLLWDRGTILLEGQLPEELRRLSFVKLDPRVGRYRALAIYYQRILAAAKAAGAEVEDRVWAPQCREVRPAAEVKLRSYQREALAAWMRTKRGVVVMPTGAGKTHVAIAAIAELGEPALVVVPTVELVQQWRTRLSHYFPGRVGVWYGEEKRESCVTVITYDSAYAAVETIGNRFRLLVFDEVHHLPSQSYRQIAELSPAPYRMGLTATPERADGLHVDLDWLVGPVVYRLSAAEVRGLWTADYEVEVVKVQLREEERALYKELERRYLAYLRKRGLRFRSPSDFQKLVVLAGRDPEARRALAAWHGMRRLIFETEAKVDAVGDILAKHRDSKVIIFTEYTSLARAVSERYLIPLVAHDTTPYERELVMSAFRRGEFKAIVTGKVLDEGVDVPDVDVVVILGGTSSTRQFIQRMGRALRLKPHKAKIYEVVTASTREVGAARRRKRGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8S6</accession>
    <name>B1Y8S6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1228</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350574.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8S6"/>
    <dbReference type="STRING" id="444157.Tneu_1228"/>
    <dbReference type="GeneID" id="6166181"/>
    <dbReference type="KEGG" id="tne:Tneu_1228"/>
    <dbReference type="eggNOG" id="arCOG05602">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2712989_0_0_2"/>
    <dbReference type="OrthoDB" id="27714at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="72" mass="8170" checksum="3B779DA15D89EC7B" modified="2008-05-20" version="1">MEKAISITLNTPYLVEQVYRRIVGELRARGYVVAPRVEGNKIVIPYTEETRSAVWHVVKSLPPAVFTSIDLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8W3</accession>
    <name>B1Y8W3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1265</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350611.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8W3"/>
    <dbReference type="STRING" id="444157.Tneu_1265"/>
    <dbReference type="GeneID" id="6165842"/>
    <dbReference type="KEGG" id="tne:Tneu_1265"/>
    <dbReference type="eggNOG" id="arCOG00062">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030130_1_2_2"/>
    <dbReference type="OrthoDB" id="39312at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07581">
        <property type="entry name" value="nitrilase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="entry name" value="Carbon-nitrogen hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23088:SF27">
        <property type="entry name" value="DEAMINATED GLUTATHIONE AMIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23088">
        <property type="entry name" value="NITRILASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="Carbon-nitrogen hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="266" mass="29483" checksum="CC00CA8CD6D2D3D3" modified="2008-05-20" version="1">MFRLGIAQISPGRLEAVGQLVGRSEPDLLLLPEYTNFDPTGLPPEEVWRRAATLEDFVGLIGRLAAELGAYVAGGFLERGPRPRVYNTTVLVDPGGRAVGIYRKTHLFDAYGYRESEFVEPGVELSQVYAVRGAKVAFAVCFELRFPEVFRELALAGAEVAAVPAAWYAGPLKEETLHLLARTRAVENGIYVAVSALWGPRFTGRSLVVNPFGVVEAELGAGERYRQVSIDLRLVEEARKTVPTIYLRRPRLYRRLCVEQNGEEGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y915</accession>
    <name>B1Y915_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1317</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350663.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y915"/>
    <dbReference type="STRING" id="444157.Tneu_1317"/>
    <dbReference type="GeneID" id="6165444"/>
    <dbReference type="KEGG" id="tne:Tneu_1317"/>
    <dbReference type="eggNOG" id="arCOG00262">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040769_1_1_2"/>
    <dbReference type="OrthoDB" id="372203at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06580">
        <property type="entry name" value="TM_PBP1_transp_TpRbsC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43370:SF1">
        <property type="entry name" value="GUANOSINE ABC TRANSPORTER PERMEASE PROTEIN NUPQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43370">
        <property type="entry name" value="SUGAR ABC TRANSPORTER INTEGRAL MEMBRANE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="86"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="116"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="168"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="201"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="244"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="288" mass="30327" checksum="ADB4667C3C11BD4E" modified="2008-05-20" version="1">MAVEQAVALTSEALRSATPILLATLGAIVGQRAGVLNLALEGVVYLSAAVAAVVGPPWGIPAAVVVGTLYNLLYYFLSNDLAMNQILTGFAFTMVGYGVGSQIAKDVVGKPVETYVVHGTEAYLAAALVAAAVYFLLKSRLGLAIKASGDDPASLDLIGVDVYRVRKIAGAVEGLLASVAGVYLVYVYYGSWSEQLVVGWGSLAVITAMISLWSPLIAVGASIVPSVFMSLSYVLQRYLAVSPYLLNVTPYAVTIAVLAIVQTVAGRTRLKAGVPRWLARPYIREERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y943</accession>
    <name>B1Y943_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Class II aldolase/adducin family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1346</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350691.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y943"/>
    <dbReference type="STRING" id="444157.Tneu_1346"/>
    <dbReference type="GeneID" id="6165359"/>
    <dbReference type="KEGG" id="tne:Tneu_1346"/>
    <dbReference type="eggNOG" id="arCOG04226">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006033_3_0_2"/>
    <dbReference type="OrthoDB" id="18709at2157"/>
    <dbReference type="UniPathway" id="UPA00071"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016832">
        <property type="term" value="F:aldehyde-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019323">
        <property type="term" value="P:pentose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="entry name" value="Class II aldolase/adducin N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050197">
        <property type="entry name" value="Aldolase_class_II_sugar_metab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001303">
        <property type="entry name" value="Aldolase_II/adducin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22789:SF0">
        <property type="entry name" value="3-OXO-TETRONATE 4-PHOSPHATE DECARBOXYLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22789">
        <property type="entry name" value="FUCULOSE PHOSPHATE ALDOLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00596">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01007">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="AraD/HMP-PK domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Class II aldolase/adducin N-terminal" evidence="3">
        <location>
            <begin position="5"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="189" mass="20846" checksum="BD9670A653BF8FAD" modified="2008-05-20" version="1">MGVEEEFLRYVKLLYERGYLTLLSGNVSLRVGDKVLVTPTTRPKPFLTVDDLVWIDLEGRVVKGGLKPTSEWRMHVAIYRRRPDVNAVVHVHDILPTVLAERLNPSLLSEAELQLGTEIAVVPYIQPGTAELAEAVASALERRNAAVLKRHGVVTVGRDLAEAVNRAEVVSDVAKATLYSLIASKLWSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y947</accession>
    <name>B1Y947_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Crossover junction endodeoxyribonuclease Hjc</fullName>
            <shortName evidence="11">Hjc</shortName>
            <ecNumber evidence="11">3.1.21.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Holliday junction resolvase Hjc</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">hjc</name>
        <name evidence="12" type="ordered locus">Tneu_1350</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are subsequently ligated to produce recombinant products.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 11">
            <text>Endonucleolytic cleavage at a junction such as a reciprocal single-stranded crossover between two homologous DNA duplexes (Holliday junction).</text>
            <dbReference type="EC" id="3.1.21.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the Holliday junction resolvase Hjc family.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.10" evidence="11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350695.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y947"/>
    <dbReference type="STRING" id="444157.Tneu_1350"/>
    <dbReference type="GeneID" id="6165421"/>
    <dbReference type="KEGG" id="tne:Tneu_1350"/>
    <dbReference type="eggNOG" id="arCOG00919">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139546_1_0_2"/>
    <dbReference type="OrthoDB" id="34330at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008821">
        <property type="term" value="F:crossover junction DNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01490">
        <property type="entry name" value="HJ_Resolv_Hjc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002732">
        <property type="entry name" value="Hjc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014428">
        <property type="entry name" value="Hjc_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040854">
        <property type="entry name" value="Hol_resolv_Hjc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39651">
        <property type="entry name" value="HOLLIDAY JUNCTION RESOLVASE HJC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39651:SF1">
        <property type="entry name" value="HOLLIDAY JUNCTION RESOLVASE HJC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01870">
        <property type="entry name" value="Hjc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004985">
        <property type="entry name" value="Hlld_jn_rslvs_ar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 11" id="KW-0227">DNA damage</keyword>
    <keyword evidence="8 11" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="9 11" id="KW-0234">DNA repair</keyword>
    <keyword evidence="7 11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 11" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 11" id="KW-0540">Nuclease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="11">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="11">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB40276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="134" mass="15587" checksum="8CFF8BFD97AC0528" modified="2008-05-20" version="1">MSVKRKGSAKERELANYFWERGCAVLRGCSSGGGVRKRYVPDIVAICRGVVLVFEVKYRSKASPIRLEPEKLEKLVEFARRAGGRPLLLVKYGRDPWRVLEAREKVDREEYEKSVELRAFLESLFSARLEEYFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y969</accession>
    <name>B1Y969_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Metal-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1372</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y969"/>
    <dbReference type="STRING" id="444157.Tneu_1372"/>
    <dbReference type="KEGG" id="tne:Tneu_1372"/>
    <dbReference type="eggNOG" id="arCOG10118">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3057335_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="54" mass="6201" checksum="4B6CFDBE4FBA6FBA" modified="2008-05-20" version="1">MDMRCPMYRSTADGVRCVLMPPEEWRLRRAQLEKYCNGGGNGCPIYAQYLSKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y979</accession>
    <name>B1Y979_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Exosome complex component Rrp4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rrp4</name>
        <name evidence="7" type="ordered locus">Tneu_1382</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Component of the archaeal exosome complex. Forms a trimer of Rrp4 and/or Csl4 subunits. The trimer associates with an hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 heterodimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the RRP4 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350727.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y979"/>
    <dbReference type="STRING" id="444157.Tneu_1382"/>
    <dbReference type="GeneID" id="6164777"/>
    <dbReference type="KEGG" id="tne:Tneu_1382"/>
    <dbReference type="eggNOG" id="arCOG00678">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071769_0_0_2"/>
    <dbReference type="OrthoDB" id="35160at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000178">
        <property type="term" value="C:exosome (RNase complex)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008143">
        <property type="term" value="F:poly(A) binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071034">
        <property type="term" value="P:CUT catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000467">
        <property type="term" value="P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071051">
        <property type="term" value="P:poly(A)-dependent snoRNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034475">
        <property type="term" value="P:U4 snRNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd22524">
        <property type="entry name" value="KH-I_Rrp4_prokar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05789">
        <property type="entry name" value="S1_Rrp4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.50.140:FF:000127">
        <property type="entry name" value="Exosome complex component RRP40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="entry name" value="K Homology domain, type 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00623">
        <property type="entry name" value="Exosome_Rrp4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026699">
        <property type="entry name" value="Exosome_RNA_bind1/RRP40/RRP4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004088">
        <property type="entry name" value="KH_dom_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023474">
        <property type="entry name" value="Rrp4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054371">
        <property type="entry name" value="RRP4_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048565">
        <property type="entry name" value="S1_RRP4"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003181">
        <property type="entry name" value="PRK04163.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21321:SF4">
        <property type="entry name" value="EXOSOME COMPLEX COMPONENT RRP4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21321">
        <property type="entry name" value="PNAS-3 RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22625">
        <property type="entry name" value="ECR1_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15985">
        <property type="entry name" value="KH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21266">
        <property type="entry name" value="S1_RRP4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="Eukaryotic type KH-domain (KH-domain type I)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110324">
        <property type="entry name" value="Ribosomal L27 protein-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0271">Exosome</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="S1 motif" evidence="6">
        <location>
            <begin position="63"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="238" mass="26545" checksum="CB28B0249094C72E" modified="2008-05-20" version="1">MYFVTPRQLIFPGDVVATADSKVEGPVFLDNGRYRSLVVGLVEFRDDVVVIVPLEGTYRPKKGDLVVGYVTDVLATGWEVDIRSFMPAYLPVSEALHRHVDLETTPLTTFLNIGDVVVAKVKDVDLTDEYPVILTLKEERVGKVERGTVVEISPVKVPRVIGKKGSMLNTLMELSCDIVVGQNGRIWARCKDARDEVFLASLIKKIETESHVMGLTDRVKAEIEKWRAASTKAPENYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y981</accession>
    <name>B1Y981_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Thiamine-phosphate synthase ThiN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1384</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350729.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y981"/>
    <dbReference type="STRING" id="444157.Tneu_1384"/>
    <dbReference type="GeneID" id="6164778"/>
    <dbReference type="KEGG" id="tne:Tneu_1384"/>
    <dbReference type="eggNOG" id="arCOG00021">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054903_0_0_2"/>
    <dbReference type="OrthoDB" id="26806at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="entry name" value="Class II aldolase/adducin N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019293">
        <property type="entry name" value="ThiN"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40730:SF4">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40730">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR PROTEIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10120">
        <property type="entry name" value="ThiN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="AraD/HMP-PK domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="lambda repressor-like DNA-binding domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiamine-phosphate synthase ThiN" evidence="1">
        <location>
            <begin position="134"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="289" mass="32079" checksum="D9B1A82A777FB0C7" modified="2008-05-20" version="1">MVPVEFLVEVFIAPLKGLLAHELAQRGYSQSKIGQLLGISQPAVSAYLKNPRDIYEEKLLKVIDKRELERLLRSAASLVESASPEEVLRYVNNYGLTLLSTLKLCPLHRATYPVLQNCEICRDVQIYTETARRVETAFEILRRCDRCHKLIPKVLTNIVELGLEGGVGFPGRIYVEGNQLVARGRPKPNVSKFLTSLIQEVNKIHSEVKAVANIAYVGLDCVRGRLKTAEVGPSNSEEEIITNVASVFKRGIFDVVYDSGGRGIEPNAYVFGIDAIDVATKILEIARCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y990</accession>
    <name>B1Y990_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransferase type 11 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1394</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350738.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y990"/>
    <dbReference type="STRING" id="444157.Tneu_1394"/>
    <dbReference type="GeneID" id="6164948"/>
    <dbReference type="KEGG" id="tne:Tneu_1394"/>
    <dbReference type="eggNOG" id="arCOG00109">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1631717_0_0_2"/>
    <dbReference type="OrthoDB" id="27149at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransferase type 11" evidence="1">
        <location>
            <begin position="26"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="162" mass="17426" checksum="72A13E76233EE9F3" modified="2008-05-20" version="1">MPYQPAEDSYLTLEALEDVEGGDVCIDVGTGTCILAKSLAGRCRHVVAVDLDPEACKTCKGVDVVCGDAASALRAGDVVVSNLPYLPPEEPVDPAIHDTGVVPKLLRWISYARPHKVVLTFSSLGRADLVMEALRPMCTVVRLARLHLFFESIYTVVAVCNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9B6</accession>
    <name>B1Y9B6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1420</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350764.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9B6"/>
    <dbReference type="STRING" id="444157.Tneu_1420"/>
    <dbReference type="GeneID" id="6164336"/>
    <dbReference type="KEGG" id="tne:Tneu_1420"/>
    <dbReference type="eggNOG" id="arCOG00749">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028518_10_0_2"/>
    <dbReference type="OrthoDB" id="312811at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43839">
        <property type="entry name" value="OPPC IN A BINDING PROTEIN-DEPENDENT TRANSPORT SYSTEM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43839:SF1">
        <property type="entry name" value="OPPC IN A BINDING PROTEIN-DEPENDENT TRANSPORT SYSTEM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="262"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="315"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="383"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="435"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="266"/>
            <end position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="471" mass="52093" checksum="75B4BEF80D7A238E" modified="2008-05-20" version="1">MIREFVRSPAGLVGAAILALFTLISLYVLVTYPLDYGTRYWSNPKHWEDYPKLVPPEWVNYFSAQKLPRHYVSELHRPSEVAGNIKRWVFIYEFDADKFPTGIILKYDNLTFYGDLPIVSLKVKRPDGKEVVLLDYDGGIPPPRPGEQPPYVRFVESPRTIVLGAEPQVIRKATVFANELGVNCTIADVRDGNLLPYIVFGEAVGPGCVADSFKPLRGRYVFEVELVGDPRDGVGLVKLVVQGAVYGFMGTDYLGRDLAQGLLFGFPVALFIGGVVALFSTLIGMALGIVSGYIGGKVDEAIQRFADVMNNLPTLPLLILFVFVLGRSLFNIILVLVLFGWAGVTIIVRSMVLSIRNSQFIEAAKLAGAGRLWIMRKHVLPPVLPYSFALIIFNIPGAILSEAGLSFLGLGDPSIPTWGQILQQAFDNGALQNFAWWWILPPGILIVLTAVGFVLIFFALEPLVNPRLRRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9D7</accession>
    <name>B1Y9D7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Actin/actin family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1441</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350785.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9D7"/>
    <dbReference type="STRING" id="444157.Tneu_1441"/>
    <dbReference type="GeneID" id="6165063"/>
    <dbReference type="KEGG" id="tne:Tneu_1441"/>
    <dbReference type="eggNOG" id="arCOG05583">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_627936_0_0_2"/>
    <dbReference type="OrthoDB" id="30606at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.570">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004000">
        <property type="entry name" value="Actin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11937">
        <property type="entry name" value="ACTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00022">
        <property type="entry name" value="Actin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00268">
        <property type="entry name" value="ACTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="429" mass="48130" checksum="2D36A60AAC01D049" modified="2008-05-20" version="1">MISDAYRLKYTFGVDYGTSHVKFGPISLNEPRVAQTRGLFLRDLPESVKMRIPPEVLSRGLVVGDEEVRKYLSSVRDVQRNLKYPLRDGIARRDDEDAWRVLKELARYTLAQFPASDPEFRGWLISVALSALAPDYMYKSFFDIYAELASEFKIHAVTILPQPLAVAIAENAVNCIIVEGGHGNIQIAPISFALIREGLVALNRGGAEANAITREILKDIGYSDIAREEYAVEMVKRAVGLVPRNLREAIRTAKSNPERFVTKVRLSPVVEVEFPKEYAWTRFLIGEIVFDPNHEEIKSYIEQSRLHIENAVIGDVTLYGEMDVATAIVTSLRNVSVEIQDRVASQVILSGGAFSWRVPPGLEDVAVDSVARVKIALEEKNPVLASKVNVRLVSEPQYSVWRGAVIYGYALPLSLEWSDSTKEGWYFIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9F0</accession>
    <name>B1Y9F0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">PP-loop domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1454</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350798.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9F0"/>
    <dbReference type="STRING" id="444157.Tneu_1454"/>
    <dbReference type="GeneID" id="6165623"/>
    <dbReference type="KEGG" id="tne:Tneu_1454"/>
    <dbReference type="eggNOG" id="arCOG00042">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026481_1_1_2"/>
    <dbReference type="OrthoDB" id="33422at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002144">
        <property type="term" value="C:cytosolic tRNA wobble base thiouridylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002143">
        <property type="term" value="P:tRNA wobble position uridine thiolation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01713">
        <property type="entry name" value="CTU1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056369">
        <property type="entry name" value="CTU1-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000541">
        <property type="entry name" value="Ncs6/Tuc1/Ctu1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011063">
        <property type="entry name" value="TilS/TtcA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035107">
        <property type="entry name" value="tRNA_thiolation_TtcA_Ctu1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00269">
        <property type="entry name" value="TIGR00269 family protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11807">
        <property type="entry name" value="ATPASES OF THE PP SUPERFAMILY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11807:SF12">
        <property type="entry name" value="CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01171">
        <property type="entry name" value="ATP_bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004976">
        <property type="entry name" value="ATPase_YdaO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA(Ile)-lysidine/2-thiocytidine synthase N-terminal" evidence="3">
        <location>
            <begin position="52"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="4"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="24"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="292"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="295"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="304"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="307"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR004976-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="329" mass="37758" checksum="34BAC732CB6AFEC6" modified="2008-05-20" version="1">MALCDRCGKRQAQYFRAASGEKLCLRCLFGSIERKVLDTIRRHRLIEPGDYVAVAVSGGKDSLVLLYMLGRFLQRGLLKDVKMEAFTINEGHPYSCFYRMAKRDYVRELAGKLGIEYNVYSFKDIFGVTAMELAENLSKRGHEVHMCTIDGVLRRRVMNIIGSRRGWTKIATAHNLDDEAQTVLMNVLMGNLSRFRWYGRHEDAEEKDLIPRIKPLKYVREEEVAIYAYYHGIPLMELECPYVVANPRYNLKFLLADMEREMPSVKYNLVSFGEKLSNALREPQGAKSLRRCKYCGAVSPRDICRVCELFEKAGLLDPYLAKTGARPPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9F3</accession>
    <name>B1Y9F3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DEAD/DEAH box helicase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1457</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350801.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9F3"/>
    <dbReference type="STRING" id="444157.Tneu_1457"/>
    <dbReference type="GeneID" id="6165570"/>
    <dbReference type="KEGG" id="tne:Tneu_1457"/>
    <dbReference type="eggNOG" id="arCOG00555">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000809_3_2_2"/>
    <dbReference type="OrthoDB" id="36796at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036297">
        <property type="term" value="P:interstrand cross-link repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd17923">
        <property type="entry name" value="DEXHc_Hrq1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18797">
        <property type="entry name" value="SF2_C_Hrq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018973">
        <property type="entry name" value="MZB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47957">
        <property type="entry name" value="ATP-DEPENDENT HELICASE HRQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47957:SF3">
        <property type="entry name" value="ATP-DEPENDENT HELICASE HRQ1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09369">
        <property type="entry name" value="MZB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="3">
        <location>
            <begin position="60"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="4">
        <location>
            <begin position="263"/>
            <end position="410"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="744" mass="82693" checksum="2F700A316A6BCBE5" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9F5</accession>
    <name>B1Y9F5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Adenosine monophosphate-protein transferase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1459</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350803.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9F5"/>
    <dbReference type="STRING" id="444157.Tneu_1459"/>
    <dbReference type="GeneID" id="6165511"/>
    <dbReference type="KEGG" id="tne:Tneu_1459"/>
    <dbReference type="eggNOG" id="arCOG04298">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_138382_0_0_2"/>
    <dbReference type="OrthoDB" id="371841at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1520.10">
        <property type="entry name" value="Ta1353-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007153">
        <property type="entry name" value="Adenosine_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036902">
        <property type="entry name" value="Ta1353-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36155">
        <property type="entry name" value="BLL5354 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36155:SF1">
        <property type="entry name" value="BLL5354 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04008">
        <property type="entry name" value="Adenosine_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103165">
        <property type="entry name" value="Ta1353-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="164" mass="18212" checksum="69DAC8E929F1D8C6" modified="2008-05-20" version="1">MSIRFDVVEVPIPQGTNVIIGQAHFIKTVEDLYEAIATSVPGAKFGIAFCEASGKRLIRHEANDEELRKLAVEVCGKIAAGHVFVIYLRNAWPINVLNAIKNVQEVVRIFAATANPLKVIVAEVEPERRGVIGVVDGHSPLGVETDADREERKRFLREVVRYKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9I0</accession>
    <name>B1Y9I0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1484</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9I0"/>
    <dbReference type="STRING" id="444157.Tneu_1484"/>
    <dbReference type="KEGG" id="tne:Tneu_1484"/>
    <dbReference type="eggNOG" id="arCOG05592">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2056187_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="127" mass="14349" checksum="57D01C2EDF86F1AA" modified="2008-05-20" version="1">MELNAGFVAPRFFVYPGYKSVEDEPKIRQMIYKGLKELETEIRKRMLNSDNVEELGRALKAVNMIAVKVKSPSGKISSKKDIEQIDAVIFDKMNTMLSALSSKDYGLLLSAVSELEKLVTRRNSLFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9S5</accession>
    <name>B1Y9S5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1551</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350894.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9S5"/>
    <dbReference type="STRING" id="444157.Tneu_1551"/>
    <dbReference type="GeneID" id="6166232"/>
    <dbReference type="KEGG" id="tne:Tneu_1551"/>
    <dbReference type="eggNOG" id="arCOG05683">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1801767_0_0_2"/>
    <dbReference type="OrthoDB" id="26612at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="143" mass="16607" checksum="19F900DAC3283D83" modified="2008-05-20" version="1">MRIERTGQPVSALLKLLEDDLKRDDIVHLERVPSPRAGEKYRDVVSRFFTEFGIATVYIRLRTVAFEKRYVVIARYDWAVGGVVEGWLVEGDVVKIYEPIAISLSDIGKTLEYYGEMFWRAEEKLLAKKMADVYSEEERPQTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9T1</accession>
    <name>B1Y9T1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Aminotransferase class V</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1557</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350900.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9T1"/>
    <dbReference type="STRING" id="444157.Tneu_1557"/>
    <dbReference type="GeneID" id="6165192"/>
    <dbReference type="KEGG" id="tne:Tneu_1557"/>
    <dbReference type="eggNOG" id="arCOG00082">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027686_1_1_2"/>
    <dbReference type="OrthoDB" id="35685at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008453">
        <property type="term" value="F:alanine-glyoxylate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004760">
        <property type="term" value="F:L-serine-pyruvate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019265">
        <property type="term" value="P:glycine biosynthetic process, by transamination of glyoxylate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020578">
        <property type="entry name" value="Aminotrans_V_PyrdxlP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024169">
        <property type="entry name" value="SP_NH2Trfase/AEP_transaminase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21152">
        <property type="entry name" value="AMINOTRANSFERASE CLASS V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21152:SF39">
        <property type="entry name" value="SOLUBLE HYDROGENASE, SMALL SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000524">
        <property type="entry name" value="SPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00595">
        <property type="entry name" value="AA_TRANSFER_CLASS_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotransferase class V" evidence="6">
        <location>
            <begin position="26"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU004075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="336" mass="37159" checksum="B8AE753F492A2C7B" modified="2008-05-20" version="1">MKYLTPGPVQLPKFVIEATARQPPFHRGEEFKKLFKSVLDKLNALYPAKPIVMPGTGTLAVDTMIYNYVNPGEKVLALVYGEFGKRAVDSAKSRGANVLELERDSPPPPDEVEDILRKDREIKTLLVIHNETSTAIAYKDMKKLADVAKSYGVLLLVDSVSGFPAEPLPPGVDVLATASHKALLAPPGASVLYIAVEPRYTAGVPPSMDLKKFIKMAEHLETPYTPPIPVLYALDASLSYILELGQRYTEIHRERVDYLYSAVKLNPIPPRDYRSFTVAAFLCEKPKEVLAKLREAGYVAAGGMYKYRERSIRVGVMGDVTIDDLKTVAEVINRVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9T3</accession>
    <name>B1Y9T3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1559</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350902.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9T3"/>
    <dbReference type="STRING" id="444157.Tneu_1559"/>
    <dbReference type="GeneID" id="6165098"/>
    <dbReference type="KEGG" id="tne:Tneu_1559"/>
    <dbReference type="eggNOG" id="arCOG04264">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1840660_0_0_2"/>
    <dbReference type="OrthoDB" id="27869at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="139" mass="15640" checksum="8CB47BAA3BFA2E1D" modified="2008-05-20" version="1">MDVYSVKSYPDAGQFLADLDRQIRELEEAVRAVSAELESLKPSLERYRRLQDLLKKFSGGGSERSAPIEITGLQLYIDPSPISRHEILEESYRHMADLLSVLKKVREVAQSVIREGGLESLRITVQFKNGVPVKLIVTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9U0</accession>
    <name>B1Y9U0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Signal recognition particle 19 kDa protein</fullName>
            <shortName evidence="4">SRP19</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">srp19</name>
        <name evidence="5" type="ordered locus">Tneu_1566</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. Archaeal SRP consists of a 7S RNA molecule of 300 nucleotides and two protein subunits: SRP54 and SRP19.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the SRP19 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350909.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9U0"/>
    <dbReference type="STRING" id="444157.Tneu_1566"/>
    <dbReference type="GeneID" id="6165123"/>
    <dbReference type="KEGG" id="tne:Tneu_1566"/>
    <dbReference type="eggNOG" id="arCOG01217">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_169299_1_0_2"/>
    <dbReference type="OrthoDB" id="56356at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048500">
        <property type="term" value="C:signal recognition particle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008312">
        <property type="term" value="F:7S RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006614">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.56.30">
        <property type="entry name" value="Signal recognition particle, SRP19-like subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00305">
        <property type="entry name" value="SRP19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002778">
        <property type="entry name" value="Signal_recog_particle_SRP19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036521">
        <property type="entry name" value="SRP19-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022938">
        <property type="entry name" value="SRP19_arc-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01922">
        <property type="entry name" value="SRP19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69695">
        <property type="entry name" value="SRP19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 4" id="KW-0733">Signal recognition particle</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="95" mass="11065" checksum="2D26651CDB881269" modified="2008-05-20" version="1">MKKRGGRILWLVNIDASVPRSRGRILPRGQALNKPTIQEVAKALERLGYRYQVYPEKRHPAIWFEERLAGYFVVETEEDVRSLASKVAEEVRKSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Y5</accession>
    <name>B1Y9Y5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1612</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350954.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Y5"/>
    <dbReference type="STRING" id="444157.Tneu_1612"/>
    <dbReference type="GeneID" id="6165859"/>
    <dbReference type="KEGG" id="tne:Tneu_1612"/>
    <dbReference type="eggNOG" id="arCOG05670">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1575036_0_0_2"/>
    <dbReference type="OrthoDB" id="27428at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="173" mass="19141" checksum="6EC96C9B1B14838C" modified="2008-05-20" version="1">MSAHDVVVGIVADAVKEFLNRLCECQRLMETHARDIELANVADAVTKALSEGREGEFGPVVVKIHKKFLGRREVRAALYGREVTVDELLAEISKAKSRAAWLAADCSEQALVEALYRFEDRYLIDVVQRNFSSFRKACKGETPHIDFGEAPAHVIEGTVRGVREYLANHGGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA00</accession>
    <name>B1YA00_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1627</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350969.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA00"/>
    <dbReference type="STRING" id="444157.Tneu_1627"/>
    <dbReference type="GeneID" id="6165974"/>
    <dbReference type="KEGG" id="tne:Tneu_1627"/>
    <dbReference type="eggNOG" id="arCOG05674">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1092460_0_0_2"/>
    <dbReference type="OrthoDB" id="28656at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="181"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="227"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="254" mass="26785" checksum="AE185A5FB076DB8B" modified="2008-05-20" version="1">MEEIYAFILATLLIYNNSLVVLGPTAWGTGLGPRRSYAVAVAGQLLGVATSTMRPIHMGTAEFLYISFLYVAISAAKISLPISVAGYAISSLSPGAAAIWLTSPATSAATYALCRTRSIAKLAAPSLLLVMYMFGYNNVALFNLNPALTAAAVLIGTYLGLGYSRWVVDIAALRPRTAASINLTASLGALLGTLANVPISFTLVAYSSMLVSAYTSNVRIIRARKFVKAYAGILIALLAASIFPYLKSLPLPHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA10</accession>
    <name>B1YA10_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Mechanosensitive ion channel MscS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1637</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350979.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA10"/>
    <dbReference type="STRING" id="444157.Tneu_1637"/>
    <dbReference type="GeneID" id="6165801"/>
    <dbReference type="KEGG" id="tne:Tneu_1637"/>
    <dbReference type="eggNOG" id="arCOG01573">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115707_0_0_2"/>
    <dbReference type="OrthoDB" id="31543at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008381">
        <property type="term" value="F:mechanosensitive monoatomic ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045275">
        <property type="entry name" value="MscS_archaea/bacteria_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023408">
        <property type="entry name" value="MscS_beta-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006685">
        <property type="entry name" value="MscS_channel_2nd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30221">
        <property type="entry name" value="SMALL-CONDUCTANCE MECHANOSENSITIVE CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30221:SF1">
        <property type="entry name" value="SMALL-CONDUCTANCE MECHANOSENSITIVE CHANNEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00924">
        <property type="entry name" value="MS_channel_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="Sm-like ribonucleoproteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="85"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="111"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="Mechanosensitive ion channel MscS" evidence="6">
        <location>
            <begin position="123"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="189" mass="19690" checksum="E10F1C9DBD2BC221" modified="2008-05-20" version="1">MKSVGTLVVLIVVYVVVMAVMQYAFNFVSQNIYKEAMNYKVYVDILLSLFFGWQIVKAFADVVAAPVAKRQGEAAGKAVANLIKLLGIGALVASLAGAVSGGAAAAALGGFIGLVIGFATQQVLSQAIAGTFLLLARPFKIGDKIVGAGQEGVVEDIGAMYTVLRDAEGNKILVPSNKLVGDILKIKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA27</accession>
    <name>B1YA27_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0043</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349422.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA27"/>
    <dbReference type="STRING" id="444157.Tneu_0043"/>
    <dbReference type="GeneID" id="6165020"/>
    <dbReference type="KEGG" id="tne:Tneu_0043"/>
    <dbReference type="eggNOG" id="arCOG05459">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_904953_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="315" mass="35910" checksum="1A4CF8815D1ABBE3" modified="2008-05-20" version="1">MALVPSAEEVRRRIVEHGLSIRDKVVETLPHSYGLVVEQVKSISRVYKGDFETYLSSLSNVKGLDLLVIYAALVAALYSRRPIGEEELRKLAGAFEANVYDVVSASKLRRALEAVGVEREVADETISNLLRMLNVVGVRYKSPYLWVAKQRRLPKFEKEVRDFIFRGRGGGRVGRGVKLFLRLFIHETNIPLALRIAYTPEYRKYILHGDMYTALVTLRSGAFEDVTTLTAERIRARVAKRILCEAREGGPRCRDVVFRLESVRGLVRYVGKISGDPVLYERGAYDIGARYCRDLKCDSCPIRDVCRRYTFIKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA31</accession>
    <name>B1YA31_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">TFIIB-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0047</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349426.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA31"/>
    <dbReference type="STRING" id="444157.Tneu_0047"/>
    <dbReference type="GeneID" id="6164669"/>
    <dbReference type="KEGG" id="tne:Tneu_0047"/>
    <dbReference type="eggNOG" id="arCOG05460">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2327350_0_0_2"/>
    <dbReference type="OrthoDB" id="24873at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="56"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="109" mass="12671" checksum="610C71C0801DE609" modified="2008-05-20" version="1">MSCPKCGSREVALLPSNEFLCRRCGHRWAIPHVDYTWIETDIKKAKLFEKYIDAPAESCEELLAQLMKELDEKNARLLAAKILIQRAERRKLSKAELARLYSDAERCFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA43</accession>
    <name>B1YA43_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MEMO1 family protein Tneu_0059</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0059</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the MEMO1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349438.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA43"/>
    <dbReference type="STRING" id="444157.Tneu_0059"/>
    <dbReference type="GeneID" id="6164909"/>
    <dbReference type="KEGG" id="tne:Tneu_0059"/>
    <dbReference type="eggNOG" id="arCOG01728">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038085_2_0_2"/>
    <dbReference type="OrthoDB" id="372162at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd07361">
        <property type="entry name" value="MEMO_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.830.10">
        <property type="entry name" value="LigB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00055">
        <property type="entry name" value="MEMO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002737">
        <property type="entry name" value="MEMO1_fam"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR04336">
        <property type="entry name" value="AmmeMemoSam_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001987">
        <property type="entry name" value="PRK00782.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11060">
        <property type="entry name" value="PROTEIN MEMO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11060:SF0">
        <property type="entry name" value="PROTEIN MEMO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01875">
        <property type="entry name" value="Memo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53213">
        <property type="entry name" value="LigB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="282" mass="30471" checksum="37C137B93F3C1389" modified="2008-05-20" version="1">MARGVRKPAVAGYFYEADRERLIQQIEWSIKHELGPKAPQLPKLGAEALGGVAPHAGYMYSGPVAAWIYAALSGFGKPDAFVIVGPNHYGIGAPVAIMKSGAWETPLGRVEIDAELAEEIARSGAAEEDPHAFSREHSIEVQIPFIQYFFGDVKIVPIALWRQTPSASRELGKAIAAALKKRGGRIYVIASSDFNHYEPHDVTVKKDEMAIGKILKLDEAGLFEVASKFDISICGLGPIGVLITAAKELGYNNATLLKHATSGDTSGYRDETVGYASILIHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA46</accession>
    <name>B1YA46_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0062</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349441.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA46"/>
    <dbReference type="STRING" id="444157.Tneu_0062"/>
    <dbReference type="GeneID" id="6164981"/>
    <dbReference type="KEGG" id="tne:Tneu_0062"/>
    <dbReference type="eggNOG" id="arCOG05461">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_272814_0_0_2"/>
    <dbReference type="OrthoDB" id="28958at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="1196" mass="126744" checksum="2F4C95BC9F3A769A" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA50</accession>
    <name>B1YA50_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Thioredoxin-like fold domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0066</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349445.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA50"/>
    <dbReference type="STRING" id="444157.Tneu_0066"/>
    <dbReference type="GeneID" id="6165006"/>
    <dbReference type="KEGG" id="tne:Tneu_0066"/>
    <dbReference type="eggNOG" id="arCOG03729">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1056088_0_0_2"/>
    <dbReference type="OrthoDB" id="29008at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01217">
        <property type="entry name" value="PRICHEXTENSN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="121"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="161"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="198"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="274" mass="29809" checksum="4B6C4D1900F83949" modified="2008-05-20" version="1">MYIELFVVAGQSVDLENALKKAVEELRGQVQRADKVRLATVKIRPDAVDQVLKLVGESPDKIPPHYRSLVNMLKKYSISRFPAVVVDGVKVGEGDVSIEEVLRAVQDRARAEFPELSALELVPPRPTPAPVQPVPEVRPLEPPPEPQKPPAEAPRPEPVRPPEPPRFAPPEPPRPPPEVPRAEPPRPPLELPRPEPQRPVAAEPAPSAPAALPRPAEASVPRQLTAVVKLVLGRPDSCLECAYFGQLTSRCFLFGFAVANPASPPCKQYVRGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA84</accession>
    <name>B1YA84_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0100</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349479.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA84"/>
    <dbReference type="STRING" id="444157.Tneu_0100"/>
    <dbReference type="GeneID" id="6164545"/>
    <dbReference type="KEGG" id="tne:Tneu_0100"/>
    <dbReference type="eggNOG" id="arCOG05470">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2103603_0_0_2"/>
    <dbReference type="OrthoDB" id="27062at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="63"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="114" mass="13090" checksum="7A852CE8533A7075" modified="2008-05-20" version="1">MEDSTKKVEGLVRALAVEVLNKFEKKKKLDIQELVILATYLNMRRLDEMRESIDGVMRAFQRLDALIDVVKELRAALERMESGRSDEAARLLREVNAKLDQVLEKLGAFSIEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="98" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA87</accession>
    <name>B1YA87_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">ATP-dependent DNA helicase Hel308</fullName>
            <ecNumber evidence="10">5.6.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">DNA 3'-5' helicase Hel308</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">hel308</name>
        <name evidence="14" type="ordered locus">Tneu_0103</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="16">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>Couples ATP hydrolysis with the unwinding of duplex DNA by translocating in the 3'-5' direction.</text>
            <dbReference type="EC" id="5.6.2.4"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="10">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the helicase family. Hel308 subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.4" evidence="10"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA87"/>
    <dbReference type="STRING" id="444157.Tneu_0103"/>
    <dbReference type="KEGG" id="tne:Tneu_0103"/>
    <dbReference type="eggNOG" id="arCOG00553">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006553_3_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18028">
        <property type="entry name" value="DEXHc_archSki2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18795">
        <property type="entry name" value="SF2_C_Ski2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:003787">
        <property type="entry name" value="ATP-dependent DNA helicase Hel308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3380.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00442">
        <property type="entry name" value="Helicase_Hel308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048772">
        <property type="entry name" value="Hel308-like_dom4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050474">
        <property type="entry name" value="Hel308_SKI2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022965">
        <property type="entry name" value="Helicase_Hel308"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003583">
        <property type="entry name" value="Hlx-hairpin-Hlx_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47961:SF10">
        <property type="entry name" value="ATP-DEPENDENT DNA HELICASE HEL308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47961">
        <property type="entry name" value="DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21280">
        <property type="entry name" value="Helicase_dom4_arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14520">
        <property type="entry name" value="HHH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00278">
        <property type="entry name" value="HhH1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158702">
        <property type="entry name" value="Sec63 N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 10" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 10" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 10 14" id="KW-0347">Helicase</keyword>
    <keyword evidence="3 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="1 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="12">
        <location>
            <begin position="56"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="13">
        <location>
            <begin position="254"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00034617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB39061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="729" mass="79434" checksum="8D5DF9E49F8AD93E" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA93</accession>
    <name>B1YA93_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Activator of aromatic catabolism domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0109</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA93"/>
    <dbReference type="STRING" id="444157.Tneu_0109"/>
    <dbReference type="KEGG" id="tne:Tneu_0109"/>
    <dbReference type="eggNOG" id="arCOG12851">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1727312_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010523">
        <property type="entry name" value="XylR_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06505">
        <property type="entry name" value="XylR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Activator of aromatic catabolism" evidence="1">
        <location>
            <begin position="11"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="152" mass="16286" checksum="89D0766B0784778B" modified="2008-05-20" version="1">MDLLGALGKLLRGDLKLKPEEGVLEYRGQRLVALPASAIDAAVKEMEKYFGEAAVIVMERMGAAVGAAVRNALGWKTGEEALRELPQMAPLAGLGKIRVQGDRLEMENMPEDVDPAVLRYIAGFLEGLCIHVEEIGGGGHRAEAKVAPRPCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAA1</accession>
    <name>B1YAA1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0117</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349496.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAA1"/>
    <dbReference type="STRING" id="444157.Tneu_0117"/>
    <dbReference type="GeneID" id="6164351"/>
    <dbReference type="KEGG" id="tne:Tneu_0117"/>
    <dbReference type="eggNOG" id="arCOG05473">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_120801_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="177" mass="19208" checksum="05B45CE1410FF3E3" modified="2008-05-20" version="1">MRSLEAVVLFGFVMAASVFLAFYVDMLAQAALDREVRTLAASTEGLLVGQFRDVLTAASFYYIRNFTYMLYVPTQFPTLDAYNYTSLVYVGRDGLLYINTTFTGYRGNGVSNAFVSAAVGNVTSAALTGGVRIYLQGSLGTAPPQCSTPYGVNLTMVGCSALLAGGRQYYTLWVIKR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2011-05-03" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAA9</accession>
    <name>TIAS_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS</fullName>
            <shortName evidence="1">tRNA(Ile2)-agm2C synthetase</shortName>
            <ecNumber evidence="1">6.3.4.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA(Ile2) agmatidine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">tiaS</name>
        <name type="ordered locus">Tneu_0126</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>cytidine(34) in tRNA(Ile2) + agmatine + ATP + H2O = 2-agmatinylcytidine(34) in tRNA(Ile2) + AMP + 2 phosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:43608"/>
            <dbReference type="Rhea" id="RHEA-COMP:10625"/>
            <dbReference type="Rhea" id="RHEA-COMP:10626"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58145"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="ChEBI" id="CHEBI:83545"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.22"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TiaS family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.22" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349504.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAA9"/>
    <dbReference type="SMR" id="B1YAA9"/>
    <dbReference type="STRING" id="444157.Tneu_0126"/>
    <dbReference type="GeneID" id="6165824"/>
    <dbReference type="KEGG" id="tne:Tneu_0126"/>
    <dbReference type="eggNOG" id="arCOG01115">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_675459_0_0_2"/>
    <dbReference type="OrthoDB" id="39189at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016879">
        <property type="term" value="F:ligase activity, forming carbon-nitrogen bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002101">
        <property type="term" value="P:tRNA wobble cytosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.1010">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.600.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01892">
        <property type="entry name" value="tRNA_Ile2_agm2C_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046349">
        <property type="entry name" value="C1-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053870">
        <property type="entry name" value="TiaS-like_TCKD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013696">
        <property type="entry name" value="TiaS_FLD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024913">
        <property type="entry name" value="tRNA_Ile2__agm2C_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055394">
        <property type="entry name" value="Zn_ribbon_TiaS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40705">
        <property type="entry name" value="TRNA(ILE2) 2-AGMATINYLCYTIDINE SYNTHETASE TIAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40705:SF1">
        <property type="entry name" value="TRNA(ILE2) 2-AGMATINYLCYTIDINE SYNTHETASE TIAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08489">
        <property type="entry name" value="TiaS_FLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22641">
        <property type="entry name" value="TiaS_TCKD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23783">
        <property type="entry name" value="Zn_ribbon_TiaS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57889">
        <property type="entry name" value="Cysteine-rich domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <feature type="chain" id="PRO_0000407307" description="tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS">
        <location>
            <begin position="1"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01892"/>
        </source>
    </evidence>
    <sequence length="415" mass="46507" checksum="B9312D294EBD264B" modified="2008-05-20" version="1">MRVVVGIDDTDSHRGGCTTYVGYLLAKEVLRRWGAGAFRDFPRLVRLNPNVPFKTRGNAAVALDLEIPEGDVEELWRLAVETVAAHSRREGKTDPGVAMAAGGVPERAKTLYRMALTQVVSISAAERAGVLTWGGRGKIGAVAAVGAYFPKSTFELIAYRRGDREAIPPDLVRLLEALTYPYTFHNVDRRRVLIEPRGPDPVYYGIRGLTPQHLRYALSLLEAWGYRPAGWVIYRTNQATDAHIELGVFYGDPLPYSFYRARGLVVEARRVAGRHLVGRLDSGLRFVAYRHLGRLASELERCLRCDVVLYGGLKPRRGGLYLYVERAYVLGRYIPARSRCTYCGGSLESLGRGRGWRCRRCGAVFHSAPIRWLYDTAPRRALLPRPGEWRHLLKPPDVDPTIPNFFSPSSAEWIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAG0</accession>
    <name>B1YAG0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Translation initiation factor 2, alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1687</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eIF-2-alpha family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351028.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAG0"/>
    <dbReference type="STRING" id="444157.Tneu_1687"/>
    <dbReference type="GeneID" id="6165151"/>
    <dbReference type="KEGG" id="tne:Tneu_1687"/>
    <dbReference type="eggNOG" id="arCOG04107">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033458_0_2_2"/>
    <dbReference type="OrthoDB" id="84794at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04452">
        <property type="entry name" value="S1_IF2_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1130">
        <property type="entry name" value="EIF_2_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.190">
        <property type="entry name" value="Translation initiation factor 2, subunit 1, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044126">
        <property type="entry name" value="S1_IF2_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024055">
        <property type="entry name" value="TIF2_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024054">
        <property type="entry name" value="TIF2_asu_middle_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011488">
        <property type="entry name" value="TIF_2_asu"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003062">
        <property type="entry name" value="PRK03987.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10602">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10602:SF0">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07541">
        <property type="entry name" value="EIF_2_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110993">
        <property type="entry name" value="eIF-2-alpha, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116742">
        <property type="entry name" value="eIF2alpha middle domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S1 motif" evidence="4">
        <location>
            <begin position="12"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="264" mass="30083" checksum="0E2403A571801648" modified="2008-05-20" version="1">MRLSRKELPDVGEVVIGTVKKIAEHGAYIYLDEYELEAFAPTQEIIQSWFHSIRDYVKEGNKTVFKVISVNPRMRVVEVSLKRVRVDEKEKKLLLYRHKVRVLKMLEIAMKKLGRPPEEALKTLWYLEEQFGDPFKVFEEVVKTGPHVLDDLELDPQLKEQIAELARQQVEIPPTKISGIIKAVSVEGDGAERIKAALGELAKALHEKYPGVSAKIYVVGPPRYRVDLVGQAPKQVEAAFTELANILQTLQKKHKVIATVQRLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAJ3</accession>
    <name>B1YAJ3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Probable ribosomal RNA small subunit methyltransferase A</fullName>
            <ecNumber evidence="6">2.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">16S rRNA dimethyladenosine transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">16S rRNA dimethylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rsmA</name>
        <name evidence="6" type="synonym">ksgA</name>
        <name evidence="9" type="ordered locus">Tneu_1724</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351061.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAJ3"/>
    <dbReference type="STRING" id="444157.Tneu_1724"/>
    <dbReference type="GeneID" id="6166148"/>
    <dbReference type="KEGG" id="tne:Tneu_1724"/>
    <dbReference type="eggNOG" id="arCOG04131">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041220_0_2_2"/>
    <dbReference type="OrthoDB" id="9883at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000179">
        <property type="term" value="F:rRNA (adenine-N6,N6-)-dimethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00607">
        <property type="entry name" value="16SrRNA_methyltr_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001737">
        <property type="entry name" value="KsgA/Erm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020596">
        <property type="entry name" value="rRNA_Ade_Mease_Trfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020598">
        <property type="entry name" value="rRNA_Ade_methylase_Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011530">
        <property type="entry name" value="rRNA_adenine_dimethylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00755">
        <property type="entry name" value="ksgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11727">
        <property type="entry name" value="DIMETHYLADENOSINE TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11727:SF7">
        <property type="entry name" value="DIMETHYLADENOSINE TRANSFERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00398">
        <property type="entry name" value="RrnaAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00650">
        <property type="entry name" value="rADc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01131">
        <property type="entry name" value="RRNA_A_DIMETH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51689">
        <property type="entry name" value="SAM_RNA_A_N6_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="4 6 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Ribosomal RNA adenine methylase transferase N-terminal" evidence="8">
        <location>
            <begin position="16"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="227" mass="25964" checksum="4E39E63C426BB2BA" modified="2008-05-20" version="1">MRRRRWSQHFLRDPSAARYIAELVPPGLDVLEVGPGRGALTIPLAERARTVYAIEVDRRLAELLRKTAPPNVVVIEGDALEVEWPRADYFVSNIPYSITSPLLMKLARHRMPAVVTVQREVAERLAAAPGGENYGRLTVAVQCHYEVEVLRTLPPRVFQPPPRVYSAVVRLTPRPPCVEDFDGFQRFTAWLFSARRKTLRRLGLGEGDRRVYQLSLEEIVELYKKHM</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAJ9</accession>
    <name>RL34_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein eL34</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L34e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl34e</name>
        <name type="ordered locus">Tneu_1730</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL34 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351067.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAJ9"/>
    <dbReference type="SMR" id="B1YAJ9"/>
    <dbReference type="STRING" id="444157.Tneu_1730"/>
    <dbReference type="GeneID" id="6164824"/>
    <dbReference type="KEGG" id="tne:Tneu_1730"/>
    <dbReference type="eggNOG" id="arCOG04168">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_118652_2_0_2"/>
    <dbReference type="OrthoDB" id="43096at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.370.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00349">
        <property type="entry name" value="Ribosomal_eL34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008195">
        <property type="entry name" value="Ribosomal_eL34"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018065">
        <property type="entry name" value="Ribosomal_eL34_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047868">
        <property type="entry name" value="Ribosomal_L34e_arc-type"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003143">
        <property type="entry name" value="PRK04059.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01199">
        <property type="entry name" value="Ribosomal_L34e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01250">
        <property type="entry name" value="RIBOSOMALL34"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01145">
        <property type="entry name" value="RIBOSOMAL_L34E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000133415" description="Large ribosomal subunit protein eL34">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="84" mass="9359" checksum="633CB53602C2A56A" modified="2008-05-20" version="1">MPRPAYRSRSVRRIKVRTPGGRTAVHYEKRAKGAPRCPITGLAIGGMNKKIYRFGVSNRAPTRPYGGVFSHKALARAIRLAVRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAK5</accession>
    <name>B1YAK5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1736</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351073.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAK5"/>
    <dbReference type="STRING" id="444157.Tneu_1736"/>
    <dbReference type="GeneID" id="6164676"/>
    <dbReference type="KEGG" id="tne:Tneu_1736"/>
    <dbReference type="eggNOG" id="arCOG05652">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1631721_0_0_2"/>
    <dbReference type="OrthoDB" id="386448at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01217">
        <property type="entry name" value="PRICHEXTENSN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="95"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="125"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="64"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="153" mass="16295" checksum="126910948AA84588" modified="2008-05-20" version="1">MAVDDKEQDKPLRRPPPPRQPPVQPIPPQPPPPPPQYQQPIPPPPPPPGAYPIPPPTVRTQRTAPPPPPPQPSQPASQPETVARRGVKAEKTQPLPLVGIIIAVVAALMGVITTVFSVFNEALSIPLLAAAVAGTNIAMIIIAMAIWRLLGRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAM0</accession>
    <name>B1YAM0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Abortive infection protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0142</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAM0"/>
    <dbReference type="STRING" id="444157.Tneu_0142"/>
    <dbReference type="KEGG" id="tne:Tneu_0142"/>
    <dbReference type="eggNOG" id="arCOG03735">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1307865_0_0_2"/>
    <dbReference type="OrthoDB" id="275779at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004175">
        <property type="term" value="F:endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080120">
        <property type="term" value="P:CAAX-box protein maturation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052710">
        <property type="entry name" value="CAAX_protease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003675">
        <property type="entry name" value="Rce1/LyrA-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36435:SF1">
        <property type="entry name" value="CAAX AMINO TERMINAL PROTEASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36435">
        <property type="entry name" value="SLR1288 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02517">
        <property type="entry name" value="Rce1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="113"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="CAAX prenyl protease 2/Lysostaphin resistance protein A-like" evidence="2">
        <location>
            <begin position="115"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="210" mass="22309" checksum="8636C7A62D256C64" modified="2008-05-20" version="1">MAQQVKKRCIATAVIRRIYLPAAFAALVAALVALKPPACVALYAGAAVYLAFAPAGALVRWRLDRRFPLAFAVYLLSLVAAGAVAAAVPPIRADYVKLGEAQARFFAEATTCPMGWALVFLQALVLAPLVEEMLFRGIVFEEVKGRLGPAAAYVVSSLVFAILHKPGLAAVPIFIVALALAFAYDRYGLPASILLHFLQNAAALWLTKGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAM2</accession>
    <name>B1YAM2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 10">Probable thymidylate kinase</fullName>
            <ecNumber evidence="2 10">2.7.4.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">dTMP kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">tmk</name>
        <name evidence="12" type="ordered locus">Tneu_0144</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9 10">
            <text>dTMP + ATP = dTDP + ADP</text>
            <dbReference type="Rhea" id="RHEA:13517"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58369"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the thymidylate kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.9" evidence="2 10"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349522.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAM2"/>
    <dbReference type="STRING" id="444157.Tneu_0144"/>
    <dbReference type="GeneID" id="6165015"/>
    <dbReference type="KEGG" id="tne:Tneu_0144"/>
    <dbReference type="eggNOG" id="arCOG01891">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049131_0_2_2"/>
    <dbReference type="OrthoDB" id="43083at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004798">
        <property type="term" value="F:dTMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006233">
        <property type="term" value="P:dTDP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006235">
        <property type="term" value="P:dTTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006227">
        <property type="term" value="P:dUDP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01672">
        <property type="entry name" value="TMPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000225">
        <property type="entry name" value="Thymidylate kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00165">
        <property type="entry name" value="Thymidylate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039430">
        <property type="entry name" value="Thymidylate_kin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018095">
        <property type="entry name" value="Thymidylate_kin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018094">
        <property type="entry name" value="Thymidylate_kinase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00041">
        <property type="entry name" value="DTMP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10344">
        <property type="entry name" value="THYMIDYLATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10344:SF4">
        <property type="entry name" value="UMP-CMP KINASE 2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02223">
        <property type="entry name" value="Thymidylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01331">
        <property type="entry name" value="THYMIDYLATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 10 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 10" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thymidylate kinase-like" evidence="11">
        <location>
            <begin position="6"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="8"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="204" mass="22733" checksum="E034D147F7FFFF08" modified="2008-05-20" version="1">MAFVAIEGIDGSGKSTVISRLAEILPKVYTTREPSGGPIGRLIKEWALRGGTVDPHVDALLFAADRIEHYRREVEPKVREGYIVISERYVESSIAYQGAAGVPLEFIKSINSLVPRPDVTVILDVEPEVAISRVRQRGALEKYEQMAFLRRVREIYLARAREEGYPVVDAARPPEVVAREVAEIVKKALDYRKGEGGDRGVYRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAP1</accession>
    <name>B1YAP1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0163</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349541.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAP1"/>
    <dbReference type="STRING" id="444157.Tneu_0163"/>
    <dbReference type="GeneID" id="6164712"/>
    <dbReference type="KEGG" id="tne:Tneu_0163"/>
    <dbReference type="eggNOG" id="arCOG05478">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1472142_0_0_2"/>
    <dbReference type="OrthoDB" id="28652at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="187" mass="20513" checksum="7B18DA2AA5AC76B3" modified="2008-05-20" version="1">MVDKGERRKRRGKIFLIALLALIFAETGYILGTTGLGPLIFGRGGPTPTTDFSAVLSVSQAYVFYHGNVTRAERPPQYGNAYVYIVPYRPGLQIPQAVAQQIALDAAERPVYVLPVLQYNTPIDPVDFAIVLPTDGRNPVVLLTYSATDFGKIESWLLGVQNQLKITISGYARVSLENGRPSGVRLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAP4</accession>
    <name>B1YAP4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">DUF92 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0166</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TMEM19 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349544.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAP4"/>
    <dbReference type="STRING" id="444157.Tneu_0166"/>
    <dbReference type="GeneID" id="6164791"/>
    <dbReference type="KEGG" id="tne:Tneu_0166"/>
    <dbReference type="eggNOG" id="arCOG02245">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036918_2_1_2"/>
    <dbReference type="OrthoDB" id="28948at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002794">
        <property type="entry name" value="DUF92_TMEM19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13353">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13353:SF5">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN 19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01940">
        <property type="entry name" value="DUF92"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="30"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="9">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="245" mass="25137" checksum="82659B8EDCDD5E2F" modified="2008-05-20" version="1">MEPQIVAVPSIVVLALLALRKGFLTVRGTVSAIAVGTAVAVAHLGLFGLTAAFFLTSSLLTKLRAEWKLERGLKDVSGRSLRQVFGVGAPIAAFALAYLASGDVRLLGAAAVAVAAATADTWASEVGVAYGGTPRYILAPWRRVEPGTSGGVTPVGVAASAAGALAMGALAPLLGIQQPFWKIALFGYLGELLDSVLGASLQVKYICGGRISEQPAAGCRRRGFLTNEAVNLVSGFAVGLLYLIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAQ5</accession>
    <name>B1YAQ5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2-oxoacid oxidoreductase (ferredoxin)</fullName>
            <ecNumber evidence="3">1.2.7.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0178</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>a 2-oxocarboxylate + 2 oxidized [2Fe-2S]-[ferredoxin] + CoA = an acyl-CoA + 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:42316"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="1.2.7.11"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Heterodimer composed of an alpha and a beta subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterotetramer of one alpha, one beta, one delta and one gamma chain.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.11" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349555.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAQ5"/>
    <dbReference type="STRING" id="444157.Tneu_0178"/>
    <dbReference type="GeneID" id="6164766"/>
    <dbReference type="KEGG" id="tne:Tneu_0178"/>
    <dbReference type="eggNOG" id="arCOG01608">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002569_5_0_2"/>
    <dbReference type="OrthoDB" id="372068at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018491">
        <property type="term" value="F:2-oxobutyrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.920:FF:000010">
        <property type="entry name" value="Pyruvate ferredoxin oxidoreductase, alpha subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.970:FF:000012">
        <property type="entry name" value="Pyruvate:ferredoxin (Flavodoxin) oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033412">
        <property type="entry name" value="PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050722">
        <property type="entry name" value="Pyruvate:ferred/Flavod_OxRd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32154:SF30">
        <property type="entry name" value="2-OXOACID OXIDOREDUCTASE (FERREDOXIN)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32154">
        <property type="entry name" value="PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17147">
        <property type="entry name" value="PFOR_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01855">
        <property type="entry name" value="POR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="TK C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyruvate flavodoxin/ferredoxin oxidoreductase pyrimidine binding" evidence="6">
        <location>
            <begin position="21"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="Pyruvate:ferredoxin oxidoreductase core" evidence="7">
        <location>
            <begin position="264"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00048893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="392" mass="43095" checksum="E0DC0914F57B336A" modified="2008-05-20" version="1">MMVQKTKQVEALTSNYAAAYAVKAVDVDVIAVYPITPQTTIIEKLSEFIANGELNAEIIHVESEHSALSAVVGASATGARVFTATSSQGLEFAHEVLHIASGFRLPIVMAVPGRALSAPISIHGDYSDVMNARDTGWVIYIAATAQEVYDTVIQAYKLAESVLLPVMVAYDGFLMSHTMEPVELNDEEEVRSFVPRAARPYTLNPRRPVTMGPLASPDWYYELKYQQVLALREAYKAAAEVDAQYGRRFGRRYGLVEGYRMEDADYAIVVYGGAAYGNAREAADRAREAGIAAGVVRVRLYRPFPTEEVLKALEGVKAFAVVDRAIMFGSPAEGPLYKDIATAMYIHGVDKPALNVIHGIGQRPIYVEDMYKIYAALRENPRRGVVFMGVRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="40" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAQ9</accession>
    <name>B1YAQ9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0182</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349559.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAQ9"/>
    <dbReference type="GeneID" id="6164511"/>
    <dbReference type="KEGG" id="tne:Tneu_0182"/>
    <dbReference type="HOGENOM" id="CLU_2875234_0_0_2"/>
    <dbReference type="OrthoDB" id="383937at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="63" mass="6629" checksum="7EBFF111D558C2CD" modified="2008-05-20" version="1">MEPLQALALATAIYAAVLFLTLLALVAKSPPGYRRIKAAEVAAVLLISAVFFALGYLLLVGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAR0</accession>
    <name>B1YAR0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glycoside hydrolase family 57</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0183</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the glycosyl hydrolase 57 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349560.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAR0"/>
    <dbReference type="STRING" id="444157.Tneu_0183"/>
    <dbReference type="CAZy" id="GH57">
        <property type="family name" value="Glycoside Hydrolase Family 57"/>
    </dbReference>
    <dbReference type="GeneID" id="6164720"/>
    <dbReference type="KEGG" id="tne:Tneu_0183"/>
    <dbReference type="eggNOG" id="arCOG03279">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018719_1_0_2"/>
    <dbReference type="OrthoDB" id="18576at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.110.10">
        <property type="entry name" value="Glycoside hydrolase 38, N terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021923">
        <property type="entry name" value="DUF3536"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052046">
        <property type="entry name" value="GH57_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027291">
        <property type="entry name" value="Glyco_hydro_38_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004300">
        <property type="entry name" value="Glyco_hydro_57_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36306">
        <property type="entry name" value="ALPHA-AMYLASE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36306:SF3">
        <property type="entry name" value="GLYCOSIDE HYDROLASE FAMILY 57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12055">
        <property type="entry name" value="DUF3536"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03065">
        <property type="entry name" value="Glyco_hydro_57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="Glycoside hydrolase/deacetylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycoside hydrolase family 57 N-terminal" evidence="4">
        <location>
            <begin position="89"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU361196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="471" mass="53558" checksum="A10C7D35F53581D5" modified="2008-05-20" version="1">MIVLHLHLYQPERADPWLEVIFPEPSASPYRHWNERVSYECYEPNAELGNYRWVSFDVGPTLLSWLRQNKPLVYMALLEADKAGAERWGHGNALAHPYYHVILPLLPRRDRDVLIYWGVEYFKRHFRRSPEGMWLPEMAVDLETLEVLVDNGISYTVLTQSQVKGGRPGGPYKVVLPSGRSIAVFVRDEALSNALAFGGFGRFMEMLGGSREAIIALDGETFGHHIKGAERDLAQFIARRGDEMANLGKLYEGGYRGEVEIVEKTSWSCPHGLGRWSRDCGCDGPAPWREALRKLVDWVGEVVDKAFEERLGGRGWELLRRYIDVILGGDNSGYGVEELRLLEAERAKLAANTSDAWFFARVGIEFGIAVKWALRAVELLGDAALMEQFMRRLGEIPIDGETALAYCPRIRGPLVAAAMYISLSMSGRPPERVGPYVFRHINDEFEIVDTRTREVFRFRHDLLWSRQGFPS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAT9</accession>
    <name>TRUA_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA pseudouridine synthase A</fullName>
            <ecNumber evidence="1">5.4.99.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA pseudouridine(38-40) synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA pseudouridylate synthase I</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA-uridine isomerase I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">truA</name>
        <name type="ordered locus">Tneu_0213</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>uridine(38/39/40) in tRNA = pseudouridine(38/39/40) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:22376"/>
            <dbReference type="Rhea" id="RHEA-COMP:10085"/>
            <dbReference type="Rhea" id="RHEA-COMP:10087"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="EC" id="5.4.99.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the tRNA pseudouridine synthase TruA family.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.12" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349589.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAT9"/>
    <dbReference type="SMR" id="B1YAT9"/>
    <dbReference type="STRING" id="444157.Tneu_0213"/>
    <dbReference type="GeneID" id="6164971"/>
    <dbReference type="KEGG" id="tne:Tneu_0213"/>
    <dbReference type="eggNOG" id="arCOG04449">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014673_4_2_2"/>
    <dbReference type="OrthoDB" id="25720at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0160147">
        <property type="term" value="F:tRNA pseudouridine(38-40) synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031119">
        <property type="term" value="P:tRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.660">
        <property type="entry name" value="Pseudouridine synthase I, catalytic domain, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.580">
        <property type="entry name" value="Pseudouridine synthase I, catalytic domain, N-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00171">
        <property type="entry name" value="TruA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001406">
        <property type="entry name" value="PsdUridine_synth_TruA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020097">
        <property type="entry name" value="PsdUridine_synth_TruA_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020095">
        <property type="entry name" value="PsdUridine_synth_TruA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020094">
        <property type="entry name" value="TruA/RsuA/RluB/E/F_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11142">
        <property type="entry name" value="PSEUDOURIDYLATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11142:SF0">
        <property type="entry name" value="TRNA PSEUDOURIDINE SYNTHASE-LIKE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01416">
        <property type="entry name" value="PseudoU_synth_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001430">
        <property type="entry name" value="tRNA_psdUrid_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="Pseudouridine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0413">Isomerase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <feature type="chain" id="PRO_1000097796" description="tRNA pseudouridine synthase A">
        <location>
            <begin position="1"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00171"/>
        </source>
    </evidence>
    <sequence length="255" mass="28392" checksum="3A2D5F2865303EF8" modified="2008-05-20" version="1">MPYLYRIAYDGTLFYGFTGHPRSLEPHLRRALGDVLGRGSRTDPGVSAVGNVVMTSAKVQPAAANSKLPRGVWVWAAAEVPEGFNPRRARSRHYLYVAPHWGEDLDSMREAAELLAGTHDYASFVQRRGEPASTVTTIFSITVETRGDLVFLHFVGRGFRNKMIRKLAWAILAAGRGVLRKRDIADLLERPKPGAVPSAPAEGLVLLDIDYGVEFQVDYPSLRKAYRYFLWRYRYAAAHAAVFKAAGEALAAWEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAV9</accession>
    <name>B1YAV9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">34-dihydroxy-2-butanone 4-phosphate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1741</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; riboflavin biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351078.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAV9"/>
    <dbReference type="STRING" id="444157.Tneu_1741"/>
    <dbReference type="GeneID" id="6165317"/>
    <dbReference type="KEGG" id="tne:Tneu_1741"/>
    <dbReference type="eggNOG" id="arCOG01320">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020273_3_2_2"/>
    <dbReference type="OrthoDB" id="25735at2157"/>
    <dbReference type="UniPathway" id="UPA00275"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008686">
        <property type="term" value="F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.870.10">
        <property type="entry name" value="DHBP synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017945">
        <property type="entry name" value="DHBP_synth_RibB-like_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000422">
        <property type="entry name" value="DHBP_synthase_RibB"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004437">
        <property type="entry name" value="PRK05773.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21327:SF46">
        <property type="entry name" value="3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21327">
        <property type="entry name" value="GTP CYCLOHYDROLASE II-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00926">
        <property type="entry name" value="DHBP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55821">
        <property type="entry name" value="YrdC/RibB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0464">Manganese</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0686">Riboflavin biosynthesis</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="219" mass="23952" checksum="B306008B587861C9" modified="2008-05-20" version="1">MNPKFTVLLEEAIKALRAGRLVMLYDGDGREAEVDFVVRGDAVTPALVHWLRRNAGGLLCFVTTREVGEALGLEFLSEYYGRRGFSTRAPYGDEPAFMGYVNHVKTKTGIRDRDKALTVRELSRVVELALRNPEAAREEFAKSFYMPGHVPVLGGRLGARWGHTELALILAKAAGLPPALVIIEALGESQEALPLEDAEKLAEALGIPLVRGEEVKSLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAY8</accession>
    <name>B1YAY8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1770</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351107.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAY8"/>
    <dbReference type="STRING" id="444157.Tneu_1770"/>
    <dbReference type="GeneID" id="6165550"/>
    <dbReference type="KEGG" id="tne:Tneu_1770"/>
    <dbReference type="eggNOG" id="arCOG03747">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2243954_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="102" mass="11209" checksum="115515F640D1F969" modified="2008-05-20" version="1">MCEVLARFLVEIVAGAKGNVVSFVVGDVSRWAEAKMRPTKSVVFKVANMCEALLAAGYLEKIGKKYILRRDTPLWAKAKAGDVEGICDVIENAVFNYTKVVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB01</accession>
    <name>B1YB01_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1783</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the AB hydrolase superfamily. ABHD14 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351120.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB01"/>
    <dbReference type="STRING" id="444157.Tneu_1783"/>
    <dbReference type="GeneID" id="6165223"/>
    <dbReference type="KEGG" id="tne:Tneu_1783"/>
    <dbReference type="eggNOG" id="arCOG01648">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020336_28_1_2"/>
    <dbReference type="OrthoDB" id="7531at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="entry name" value="alpha/beta hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46197:SF3">
        <property type="entry name" value="AB HYDROLASE-1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46197">
        <property type="entry name" value="PROTEIN ABHD14B-LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="alpha/beta-Hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="4">
        <location>
            <begin position="23"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00037942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="197" mass="21651" checksum="00B018AB5D65B457" modified="2008-05-20" version="1">MKEAYIEVGGRRVRYLAGGSGRPVVLLHGWSFNADTWAECGVFSRLAERYSVYAVDMPYGVRTKSERFSAPRREYARFLRSVLDALGLADPPLVGPSASGEVVLWYIAQRLPTRAAVVVGPVGLTEELLSGVAEADVPILAIWGERDEVSRPTDALRGRRVRRLILEGAGHAAYLDKPGEFADAVLAFLEEFYQPLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB19</accession>
    <name>B1YB19_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1801</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351138.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB19"/>
    <dbReference type="STRING" id="444157.Tneu_1801"/>
    <dbReference type="GeneID" id="6164708"/>
    <dbReference type="KEGG" id="tne:Tneu_1801"/>
    <dbReference type="eggNOG" id="arCOG08082">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_197254_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="78" mass="7740" checksum="50FF18E6C1A4F6CA" modified="2008-05-20" version="1">MIEALLLVALLAGGMAIVAAARSLVRVIIGAEVATMAGIWGAALSGDLSLVAAATVAGVAETVLMVATLFRAAREGYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB23</accession>
    <name>B1YB23_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1805</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351142.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB23"/>
    <dbReference type="STRING" id="444157.Tneu_1805"/>
    <dbReference type="GeneID" id="6164612"/>
    <dbReference type="KEGG" id="tne:Tneu_1805"/>
    <dbReference type="eggNOG" id="arCOG01021">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_5_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001828">
        <property type="entry name" value="ANF_lig-bd_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051010">
        <property type="entry name" value="BCAA_transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30483:SF40">
        <property type="entry name" value="HISTIDINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30483">
        <property type="entry name" value="LEUCINE-SPECIFIC-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01094">
        <property type="entry name" value="ANF_receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="Periplasmic binding protein-like I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Receptor ligand binding region" evidence="6">
        <location>
            <begin position="131"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="30"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="463" mass="49570" checksum="73653B475635C55A" modified="2008-05-20" version="1">MNSKTVGIIVGIIVLLAIAALLINQQAPAQRTTTPQQTTPPQTTSAPTTGGQTTSTPPQTATQSCSWKLVGMYIASQDKVVFGEPQPVTPPAGAQTPVIVNVTATPADNVVEIGVLQPLSGRLGSLGELARAAAELAADDVNRYLTKIGAPFRVKVLADDTQADPNLALEKLKSLHTRGVKYYLVRTSGEVRQMKQYANDNKLILISVSSTAPGLVTPSDYVFRLPPDDTKQARALAAVLREHGIKAVALIYINNDYGRGIATQLQNILKGEMEVVVAAAYDPQKSEFSAEVSALADKVSGLVGKYGADKVAVVAPGYGELQTIFLTAANYPVLSQVRWYGTDGSTGLKELTDPKVCQFAVRVGGFVSTKFAPAKSAYYDRVRSYILSKYGREPDAYAYNAYDAVWLIALTILQNGGDPDTTKFFTKFPEVAANYFGASGLTKLNQNHDRDSADYALWALVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB25</accession>
    <name>B1YB25_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1807</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351144.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB25"/>
    <dbReference type="STRING" id="444157.Tneu_1807"/>
    <dbReference type="GeneID" id="6164682"/>
    <dbReference type="KEGG" id="tne:Tneu_1807"/>
    <dbReference type="eggNOG" id="arCOG00924">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="97750at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015807">
        <property type="term" value="P:L-amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03224">
        <property type="entry name" value="ABC_TM1139_LivF_branched"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052156">
        <property type="entry name" value="BCAA_Transport_ATP-bd_LivF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43820:SF7">
        <property type="entry name" value="BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43820">
        <property type="entry name" value="HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="2"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="233" mass="25550" checksum="730C548A74EFF25C" modified="2008-05-20" version="1">MIKTEGLDAGYGKLQVLFGVDFVAQPGKITAVLGPNGSGKSTLLKAIFGIAKIYGGRVYVGDRDVTKLPTHERAQLGVAYVSQLRNVFSTLSVLENLRLAGYGLSKDEFEERLREVAEVVPLRDILGRRAGELSGGWRQLVAIAMALMRRANIFMLDEPTAQLAPKMANQVLEVVAKLREAGHTVVLVEQNARLALEVADDAYLLVSGRVHWSGPARKLLEERELGRLYLGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB47</accession>
    <name>B1YB47_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF998 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1830</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351166.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB47"/>
    <dbReference type="STRING" id="444157.Tneu_1830"/>
    <dbReference type="GeneID" id="6164736"/>
    <dbReference type="KEGG" id="tne:Tneu_1830"/>
    <dbReference type="eggNOG" id="arCOG02008">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080422_2_0_2"/>
    <dbReference type="OrthoDB" id="46160at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009339">
        <property type="entry name" value="DUF998"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06197">
        <property type="entry name" value="DUF998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="160"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="180" mass="18216" checksum="890166ED3D3E23ED" modified="2008-05-20" version="1">MRICRAFLAVGVLQFMSAVLVAERLYPGYSPSTHYISDLGAAAAPTAALFNISAAALGIAGVAAAFCLRRAHPRGWPLLASASVGVVGVALFPEDAGLPHFISAFTAFICGAASTAVIGAEAGGVYRTLGVSLAALSTAALSLMAAGLETPLGAGCLERLVAYPILIFYMAYGFGGEETG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB68</accession>
    <name>B1YB68_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">C2H2-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0246</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349620.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB68"/>
    <dbReference type="GeneID" id="6165983"/>
    <dbReference type="KEGG" id="tne:Tneu_0246"/>
    <dbReference type="eggNOG" id="arCOG10102">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2985889_0_0_2"/>
    <dbReference type="OrthoDB" id="23641at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013087">
        <property type="entry name" value="Znf_C2H2_type"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00028">
        <property type="entry name" value="ZINC_FINGER_C2H2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="C2H2-type" evidence="1">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS00028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="62" mass="7030" checksum="8BCD99C3E263CF63" modified="2008-05-20" version="1">MEIPQELKSYLAVEADQWDVKHIVCLKCRKKFFTVRDAALHLHAVHGLKAAQKYISASHGQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBA5</accession>
    <name>B1YBA5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0284</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349657.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBA5"/>
    <dbReference type="STRING" id="444157.Tneu_0284"/>
    <dbReference type="GeneID" id="6165672"/>
    <dbReference type="KEGG" id="tne:Tneu_0284"/>
    <dbReference type="eggNOG" id="arCOG00188">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_749287_0_0_2"/>
    <dbReference type="OrthoDB" id="35850at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042626">
        <property type="term" value="F:ATPase-coupled transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050095">
        <property type="entry name" value="ECF_ABC_transporter_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43553:SF24">
        <property type="entry name" value="ENERGY-COUPLING FACTOR TRANSPORTER ATP-BINDING PROTEIN ECFA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43553">
        <property type="entry name" value="HEAVY METAL TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13304">
        <property type="entry name" value="AAA_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="2"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="369" mass="39827" checksum="187A6F02FFA87B7F" modified="2008-05-20" version="1">MIYARCLTAYAGGRPVVRCADLEVAGGEVALLFGPTGGGKSALVKAMAGLLPRKGEVRLERPYFVFQDVDVNLIATTVREEVRTVSCGGEGLPDTPLERLSPGQRQLLSVELAALSRAGAVVLDEPTAFLDPASARAVRDRIFALAEEGRAVLVVEHRLELFLDADRLYLVEGGRAAEVELEDLIARSAAGGWGPYFVRGRRPPLYPLPRVEGCPAEVRGVPVRPGAKVALTGPVGSGKTYTLLALAGVVKLRGTRGCSPVGYVPQNPYMYFTAPDLRRAPPLVLEALGVERWRSPFSLSAGEARLAALLWEISRWPRLLLVDEPTAGVDRRYAEWVGEVVRAYGGTVVFASHDPVFVSRYADAEIRLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBE3</accession>
    <name>B1YBE3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Carbon monoxide dehydrogenase subunit G</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0323</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBE3"/>
    <dbReference type="STRING" id="444157.Tneu_0323"/>
    <dbReference type="KEGG" id="tne:Tneu_0323"/>
    <dbReference type="eggNOG" id="arCOG01927">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1860800_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010419">
        <property type="entry name" value="CO_DH_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38588">
        <property type="entry name" value="BLL0334 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38588:SF1">
        <property type="entry name" value="BLL0334 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06240">
        <property type="entry name" value="COXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55961">
        <property type="entry name" value="Bet v1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="143" mass="14898" checksum="22FCDF5A48C6562D" modified="2008-05-20" version="1">MVESGEFAVGKPPEEVVKVLSDPAAVARLIPGVGEVREAGGEYVGEAAVRLGHLSGKMKARFRYAEVRRDGVVVVGRAEGMQTTADFKIAVDVQPGGGGGSLVRWRFEGSARGLAASLAPSLVRDALRRIAAETAKNLAAVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBE7</accession>
    <name>B1YBE7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PaREP7</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0327</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349699.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBE7"/>
    <dbReference type="GeneID" id="6165232"/>
    <dbReference type="KEGG" id="tne:Tneu_0327"/>
    <dbReference type="eggNOG" id="arCOG01426">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055579_0_0_2"/>
    <dbReference type="OrthoDB" id="28108at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34314">
        <property type="entry name" value="CRENARCHAEAL PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34314:SF6">
        <property type="entry name" value="DUF3782 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="32"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="253" mass="30188" checksum="B33E8BA36D574C46" modified="2008-05-20" version="1">MSVDRDVLKRVVLDLLRSDEEFRLAVAGLIGLGAVLEELRKLREDFNRFTKEQAERWAENERRWEENNRRWEENNKRWEEAYRRFEAIELELKRLREDFNKFVEMEERRWEEAENKFRWLMSALDDIRRALGGGFEYYTARVVGLLLRERGVECDVRVNVTLPIDGFKEVDLICYDPLVVGEVTVAVRSIEEAEREVGKLLEAERAAERFTGRKTYMRVLAVEFASQDVAEYLRRKAQEMDILLLLGREYEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBI0</accession>
    <name>B1YBI0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Family 453</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1867</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351201.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBI0"/>
    <dbReference type="STRING" id="444157.Tneu_1867"/>
    <dbReference type="GeneID" id="6164892"/>
    <dbReference type="KEGG" id="tne:Tneu_1867"/>
    <dbReference type="eggNOG" id="arCOG03758">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_173016_0_0_2"/>
    <dbReference type="OrthoDB" id="26517at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="96" mass="11370" checksum="EBF6B950DE143DFC" modified="2008-05-20" version="1">MCLTRDLLARFYGSLDVSLRTLTHYRVLAAFGKPLDYFLLEEPWRVYEVLEKALGKHNAELIINILRSWLERNGCRLTHEQLVKYLTTREMWGSAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBJ2</accession>
    <name>B1YBJ2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase S1 and S6 chymotrypsin/Hap</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1879</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351213.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBJ2"/>
    <dbReference type="STRING" id="444157.Tneu_1879"/>
    <dbReference type="GeneID" id="6165971"/>
    <dbReference type="KEGG" id="tne:Tneu_1879"/>
    <dbReference type="eggNOG" id="arCOG02833">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020120_2_2_2"/>
    <dbReference type="OrthoDB" id="350578at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06779">
        <property type="entry name" value="cpPDZ_Deg_HtrA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051201">
        <property type="entry name" value="Chloro_Bact_Ser_Proteases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43343">
        <property type="entry name" value="PEPTIDASE S12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43343:SF3">
        <property type="entry name" value="PROTEASE DO-LIKE 8, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13365">
        <property type="entry name" value="Trypsin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="PDZ domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="Trypsin-like serine proteases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PDZ" evidence="3">
        <location>
            <begin position="207"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="289" mass="30012" checksum="29CBF92D4E78F60D" modified="2008-05-20" version="1">MDLSGLVEKVARSVVGVAARGVGAVGEGFGSAFAIDRGVYATAYHVVAQAGEVALITPEGEVADAVVAAADPAEDLAILYSDLYAVPLSLGSALRLRVGQGVVAVGFPLALLDKPTATFGIVSAVGRSLRAGDRFFEYLVQTDAAINPGNSGGPLVNLSGEAVGVCSAVIAGAQGLGFAVPIDLVRIMYQMVKRYGRYVRPALGVYVVALNKALKALYGLPTDRGLLVVDVVPSSPAEEMGIARGDILTKVDGREVANVFELRLLIGEALIQGRTPRIEVIRGGRRIEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBL2</accession>
    <name>B1YBL2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">uroporphyrinogen-III C-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.107</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1899</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.1.1.107" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBL2"/>
    <dbReference type="STRING" id="444157.Tneu_1899"/>
    <dbReference type="KEGG" id="tne:Tneu_1899"/>
    <dbReference type="eggNOG" id="arCOG00644">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011276_7_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004851">
        <property type="term" value="F:uroporphyrin-III C-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019354">
        <property type="term" value="P:siroheme biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11642">
        <property type="entry name" value="SUMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1010.10:FF:000001">
        <property type="entry name" value="Siroheme synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="entry name" value="Cobalt-precorrin-4 Transmethylase, Domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="entry name" value="Methyltransferase, Cobalt-precorrin-4 Transmethylase, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006366">
        <property type="entry name" value="CobA/CysG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050161">
        <property type="entry name" value="Siro_Cobalamin_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01469">
        <property type="entry name" value="cobA_cysG_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004790">
        <property type="entry name" value="PRK06136.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45790:SF3">
        <property type="entry name" value="S-ADENOSYL-L-METHIONINE-DEPENDENT UROPORPHYRINOGEN III METHYLTRANSFERASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45790">
        <property type="entry name" value="SIROHEME SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="Tetrapyrrole methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00839">
        <property type="entry name" value="SUMT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Tetrapyrrole methylase" evidence="6">
        <location>
            <begin position="6"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="247" mass="26096" checksum="B229367731A1126B" modified="2008-05-20" version="1">MGGVGRVYIVGAGPGDPELITVKGLRLLGNADVVLHDRLVAPELLRRVKPGAVVVDVGKRPGGAGPTQAEINEMLLKYAQLYDTVVRLHGGDPLVFGRGFEECEYLAARGVSCEFVPGVTSGFAAPARFYIPPVVRGTASSVALTTGREDPSKGLRQVDFRKLAAAVDTIVVYMGASSAAEIASELIAGGLPRDTPVAVVKSAYFPDEELRLLTLGELGPVPNPSIIVVGKVVERGVRLWETARRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBL6</accession>
    <name>B1YBL6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">phosphoribosylformylglycinamidine cyclo-ligase</fullName>
            <ecNumber evidence="2">6.3.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1903</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 2/2.</text>
    </comment>
    <dbReference type="EC" id="6.3.3.1" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351237.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBL6"/>
    <dbReference type="STRING" id="444157.Tneu_1903"/>
    <dbReference type="GeneID" id="6164890"/>
    <dbReference type="KEGG" id="tne:Tneu_1903"/>
    <dbReference type="eggNOG" id="arCOG00639">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047116_0_0_2"/>
    <dbReference type="OrthoDB" id="6605at2157"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00129"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004637">
        <property type="term" value="F:phosphoribosylamine-glycine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004641">
        <property type="term" value="F:phosphoribosylformylglycinamidine cyclo-ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046084">
        <property type="term" value="P:adenine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02196">
        <property type="entry name" value="PurM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="entry name" value="PurM-like C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="entry name" value="PurM-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004733">
        <property type="entry name" value="PurM_cligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10520:SF12">
        <property type="entry name" value="TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10520">
        <property type="entry name" value="TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="PurM C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="PurM N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PurM-like N-terminal" evidence="6">
        <location>
            <begin position="38"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="PurM-like C-terminal" evidence="7">
        <location>
            <begin position="153"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="307" mass="32190" checksum="B46CC7CAB1154829" modified="2008-05-20" version="1">MRYRDAGVDLDKHWAVHRAVSQYLGGARGLYTSSVELGGAELTLHVDGVGTKALLALELDRLEVAGRDCVAVNVNDIVCDGFKPVAVVDYVAVEPQHLEKVPRVVAGVASKAGEVGAQLLGGETAVLPGVIHGIDVVCTVLGVKAAYTRPPAPGDILIGLPSTGPHANGYSLLRRLFKPGEEVCGRPAAELLLAEVADYSAVLNAVREGAAAGAVHITGGGYRKLKKALGGLGAEVAFDVPCLFREVVKRGVEPREAYQVFNMGVGMVVYTPRDRLAEALRALEPLNPKPIGEVKQGGGLRVNGVEI</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBM5</accession>
    <name>PURL_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphoribosylformylglycinamidine synthase subunit PurL</fullName>
            <shortName evidence="1">FGAM synthase</shortName>
            <ecNumber evidence="1">6.3.5.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Formylglycinamide ribonucleotide amidotransferase subunit II</fullName>
            <shortName evidence="1">FGAR amidotransferase II</shortName>
            <shortName evidence="1">FGAR-AT II</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Glutamine amidotransferase PurL</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Phosphoribosylformylglycinamidine synthase subunit II</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">purL</name>
        <name type="ordered locus">Tneu_1912</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide + L-glutamine + ATP + H2O = 2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + L-glutamate + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17129"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer. Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the FGAMS family.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.3" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351246.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBM5"/>
    <dbReference type="SMR" id="B1YBM5"/>
    <dbReference type="STRING" id="444157.Tneu_1912"/>
    <dbReference type="GeneID" id="6164920"/>
    <dbReference type="KEGG" id="tne:Tneu_1912"/>
    <dbReference type="eggNOG" id="arCOG00641">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003100_0_1_2"/>
    <dbReference type="OrthoDB" id="8251at2157"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004642">
        <property type="term" value="F:phosphoribosylformylglycinamidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02203">
        <property type="entry name" value="PurL_repeat1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02204">
        <property type="entry name" value="PurL_repeat2"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="PurM-like C-terminal domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="entry name" value="PurM-like, N-terminal domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00420">
        <property type="entry name" value="PurL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010074">
        <property type="entry name" value="PRibForGlyAmidine_synth_PurL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041609">
        <property type="entry name" value="PurL_linker"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01736">
        <property type="entry name" value="FGAM_synth_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002290">
        <property type="entry name" value="PRK01213.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43555">
        <property type="entry name" value="PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43555:SF1">
        <property type="entry name" value="PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18072">
        <property type="entry name" value="FGAR-AT_linker"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001587">
        <property type="entry name" value="FGAM_synthase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="PurM C-terminal domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="PurM N-terminal domain-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0658">Purine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000194839" description="Phosphoribosylformylglycinamidine synthase subunit PurL">
        <location>
            <begin position="1"/>
            <end position="693"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="79"/>
            <end position="82"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="248"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="292"/>
            <end position="294"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="470"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="507"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="510"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00420"/>
        </source>
    </evidence>
    <sequence length="693" mass="74555" checksum="88DA04AD6F86E01E" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBN5</accession>
    <name>B1YBN5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1922</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351256.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBN5"/>
    <dbReference type="STRING" id="444157.Tneu_1922"/>
    <dbReference type="GeneID" id="6164853"/>
    <dbReference type="KEGG" id="tne:Tneu_1922"/>
    <dbReference type="eggNOG" id="arCOG06999">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1369574_0_0_2"/>
    <dbReference type="OrthoDB" id="386077at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="114"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="199" mass="21147" checksum="28FCC660F4C3BA61" modified="2008-05-20" version="1">MKRLVAALAISTAAVALLILQLLPWFVHHGEPAAFELLAFSNGSSTPAASPYSQQETSPVPHIIASASSNQTIIYDNASLYNLTAVALSNTSFLNGFGASYYGAFSVAPVPPPWAVALGGAGVVLYGYGLYLSLCRGPLCRWRRFKALRPLSAAAVATSLALLYASPLYLALSIPGAWGIAHYYRARRRLAAWLSSTLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBQ5</accession>
    <name>B1YBQ5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">4Fe-4S ferredoxin-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0339</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349710.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBQ5"/>
    <dbReference type="STRING" id="444157.Tneu_0339"/>
    <dbReference type="GeneID" id="6165280"/>
    <dbReference type="KEGG" id="tne:Tneu_0339"/>
    <dbReference type="eggNOG" id="arCOG00333">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023081_6_0_2"/>
    <dbReference type="OrthoDB" id="42878at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="entry name" value="Alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004017">
        <property type="entry name" value="Cys_rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43551">
        <property type="entry name" value="FUMARATE REDUCTASE IRON-SULFUR SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43551:SF1">
        <property type="entry name" value="HETERODISULFIDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02754">
        <property type="entry name" value="CCG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46548">
        <property type="entry name" value="alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="101"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="165"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="534" mass="60796" checksum="57C77D75340475F0" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBQ9</accession>
    <name>B1YBQ9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Nitrate reductase gamma subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_0343</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349714.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
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    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0249">Electron transport</keyword>
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    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
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            <end position="28"/>
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    <feature type="transmembrane region" description="Helical" evidence="9">
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            <end position="234"/>
        </location>
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    <evidence type="ECO:0000256" key="1">
        <source>
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    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
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        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
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            <dbReference type="ARBA" id="ARBA00023136"/>
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    </evidence>
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        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="256" mass="28097" checksum="9F8BBCBD7C8D9A8D" modified="2008-05-20" version="1">MLDAVLFIGVPYLALVVLIIGVLAKIGAWISPRGLTSLASVAVVSYNWSAGARAGEVLKRILTFYTLKYTNDKLLYWGALLFHWGIFLTLLLGHTALFFSPEQLAAMGIDPSTRKIIAIGLGTLFGIVVVIGLILLWARRLTKPEVKSFTFADDWFALVLITAIVLVGLVNTAVIHPHYDKTVTPWLQNLLTGNVAAALEAITKAEPLVKLHIFLAEVLMIYVPFGKMIHPFTIFFEPTITSAPYKVSGSEVIFSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBS6</accession>
    <name>B1YBS6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Small GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0360</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
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        <property type="molecule type" value="Genomic_DNA"/>
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    <dbReference type="GeneID" id="6164912"/>
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    </dbReference>
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        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="FeoB_GTPase"/>
    </dbReference>
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        <property type="entry name" value="G_FEOB_dom"/>
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        <property type="entry name" value="GTP-bd"/>
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    </dbReference>
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        <property type="entry name" value="FE(2+) TRANSPORTER FEOB"/>
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    </dbReference>
    <dbReference type="PANTHER" id="PTHR43185">
        <property type="entry name" value="FERROUS IRON TRANSPORT PROTEIN B"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="FeoB_N"/>
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    </dbReference>
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    </dbReference>
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        <property type="entry name" value="G_FEOB"/>
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    </dbReference>
    <proteinExistence type="predicted"/>
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    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
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    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
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            <end position="440"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="512"/>
            <end position="533"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="545"/>
            <end position="567"/>
        </location>
    </feature>
    <feature type="domain" description="FeoB-type G" evidence="2">
        <location>
            <begin position="1"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="568" mass="60160" checksum="77425836F010FDCC" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBT0</accession>
    <name>B1YBT0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0364</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
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            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349734.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBT0"/>
    <dbReference type="STRING" id="444157.Tneu_0364"/>
    <dbReference type="GeneID" id="6164933"/>
    <dbReference type="KEGG" id="tne:Tneu_0364"/>
    <dbReference type="eggNOG" id="arCOG00168">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033621_2_0_2"/>
    <dbReference type="OrthoDB" id="28038at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051408">
        <property type="entry name" value="Phosphate_transprt_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42922">
        <property type="entry name" value="PHOSPHATE TRANSPORT SYSTEM PERMEASE PROTEIN PSTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42922:SF1">
        <property type="entry name" value="PHOSPHATE TRANSPORT SYSTEM PERMEASE PROTEIN PSTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="69"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="112"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="152"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="206"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="267"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="65"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="292" mass="30443" checksum="EDD73698BD37D2B0" modified="2008-05-20" version="1">MRRAVNAAGLALFAALGLLSLAPLALVVGDVLYRGLAAMWKLGPGFLTALPPTPLDESGGVGPALAGTLYMTALGALAGFLLGFPIGVYIGEYRWELAARLARVGVNVLVEFPTITIGLFVYSLSGLLTPALRALPRPPPPLDLFVGPPSVFNAYAGAAALALIMTPYVALFTASAYASVAAGLREAVYSIAGDERRALFVAMRKVLSRVITAAALLGTAKIAGETAPLLFTAGYSNYYGPFTRETASIPVLIYRSALAPYPIYHEVAYAAAALLLLLVLAAYALAQLAAKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBT4</accession>
    <name>B1YBT4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleoside recognition domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0368</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349738.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBT4"/>
    <dbReference type="STRING" id="444157.Tneu_0368"/>
    <dbReference type="GeneID" id="6165190"/>
    <dbReference type="KEGG" id="tne:Tneu_0368"/>
    <dbReference type="eggNOG" id="arCOG00360">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048086_0_0_2"/>
    <dbReference type="OrthoDB" id="51620at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038880">
        <property type="entry name" value="MJ0871-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38139">
        <property type="entry name" value="GATE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38139:SF1">
        <property type="entry name" value="NUCLEOSIDE TRANSPORTER_FEOB GTPASE GATE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="113"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="169"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="240"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="279"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="302" mass="32308" checksum="4597CC75E485BA84" modified="2008-05-20" version="1">MVVQEVAGVLLAMLLGFLAAEVLLEYGVLYKLSFLRRVARLANLPDVCGVTFATAFVSPAASNAMLQSLRDRGVLNDREVLLASLLNAAAVPFYETFTVYLPVVIPLLGPRLGLMYMSAMWLNGALSFAVVVAAGRLALNRRETGLVEEMARKPGRNYKAALRRGLRRFVKTAVVFAATVTTVELLLRYGVLQHLATPLSSYAMGISPQLLPAVGIYVLHPTAGMAAVGQLVKTGVVGEVEALAALLLASVFMLPLLYLRVYIPQWVAIFGPRVGLARGAIGLSIALAARIIVLASVLALVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBT5</accession>
    <name>B1YBT5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 12</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0369</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349739.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBT5"/>
    <dbReference type="STRING" id="444157.Tneu_0369"/>
    <dbReference type="GeneID" id="6165152"/>
    <dbReference type="KEGG" id="tne:Tneu_0369"/>
    <dbReference type="eggNOG" id="arCOG01632">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060275_0_0_2"/>
    <dbReference type="OrthoDB" id="373669at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050723">
        <property type="entry name" value="CFA/CMAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43667">
        <property type="entry name" value="CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43667:SF2">
        <property type="entry name" value="FATTY ACID C-METHYL TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase" evidence="1">
        <location>
            <begin position="60"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="254" mass="29106" checksum="67EC6F637AD3E73D" modified="2008-05-20" version="1">MDIDWAEVWAAWRREVRTPPDFWDRAAPRFYRSAKRRRVEVERFLDWLLGELGLGGGSSVLEVGAGAGAYAVPLAKRVSRVVAVEPSREMARYLRKYAEEEGVKVDVVEKRWEEVSLEEVGRHDLALAAHSLLVEDLRGAVEKLEEAARCVCVVLHVGVPGWAQLYRSLGVERPHRPWFTAFYNFLLQRGVYANVRIFERDVVREYPSVEEAAEDLGVEVERVVEALPRLGRRGDGGVVFKYKVKEAAVWWCRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBU7</accession>
    <name>B1YBU7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0383</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349751.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBU7"/>
    <dbReference type="STRING" id="444157.Tneu_0383"/>
    <dbReference type="GeneID" id="6166286"/>
    <dbReference type="KEGG" id="tne:Tneu_0383"/>
    <dbReference type="eggNOG" id="arCOG03670">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="eggNOG" id="arCOG03768">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_381588_0_0_2"/>
    <dbReference type="OrthoDB" id="28853at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009321">
        <property type="entry name" value="DUF973"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007981">
        <property type="entry name" value="Peptidase_A5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06157">
        <property type="entry name" value="DUF973"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05317">
        <property type="entry name" value="Thermopsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="534"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="592"/>
            <end position="619"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="639"/>
            <end position="661"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="681"/>
            <end position="714"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="468"/>
            <end position="523"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="468"/>
            <end position="521"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="725" mass="78828" checksum="F8A1D85B2F3EB4FA" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBY9</accession>
    <name>B1YBY9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">FAD-dependent pyridine nucleotide-disulphide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0425</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349793.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBY9"/>
    <dbReference type="STRING" id="444157.Tneu_0425"/>
    <dbReference type="GeneID" id="6166245"/>
    <dbReference type="KEGG" id="tne:Tneu_0425"/>
    <dbReference type="eggNOG" id="arCOG01069">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003291_1_3_2"/>
    <dbReference type="OrthoDB" id="27922at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050260">
        <property type="entry name" value="FAD-bd_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43429:SF1">
        <property type="entry name" value="NAD(P)H SULFUR OXIDOREDUCTASE (COA-DEPENDENT)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43429">
        <property type="entry name" value="PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00368">
        <property type="entry name" value="FADPNR"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00411">
        <property type="entry name" value="PNDRDTASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="FAD/NAD-linked reductases, dimerisation (C-terminal) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD/NAD(P)-binding" evidence="8">
        <location>
            <begin position="3"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="Pyridine nucleotide-disulphide oxidoreductase dimerisation" evidence="7">
        <location>
            <begin position="325"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009130"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="442" mass="47179" checksum="D0C972C6900BD4A6" modified="2008-05-20" version="1">MKTVVVVGGGTAGATAASRAKRLCPQCRVVLVEASRYITHAPCAIPYAIGGFAQGEIWLYSEEEFESERGVEVYTETRAVDVAGDKVFLEGKLGGSLRFDVLVVAVGARPAVPKVEGVELEGVLPVRGVEVVDKAKRLLQGARDVAVVGAGYIGVEMADVLAQMGKRVVLIDGSPRPLAKSLDPDMSAVVARYMGERVELRLGERLVRIGGEGGRARYVETDGGRYPADVVFLATGVRPNVDLALKAGARLGQTGAVEVNEYMETAAPAVYAAGDVAEARHAVTGEPVWIPLAIYANKMGCVAGTNAGLGRRAISFPPVAGASVTKFLDMYIGSTGLTEEEARRRGIYGNSISISATDKARYMKGAVDVTLKAVVDREGRLVGMQIVGRTPSVGGLVDLATQFLGRPVEDMFKAEYSYMPFTASPWHPFTIIARLYLRERLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC13</accession>
    <name>B1YC13_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">SAM-dependent methyltransferase TRM5/TYW2-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1952</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351286.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC13"/>
    <dbReference type="STRING" id="444157.Tneu_1952"/>
    <dbReference type="GeneID" id="6164475"/>
    <dbReference type="KEGG" id="tne:Tneu_1952"/>
    <dbReference type="eggNOG" id="arCOG00033">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022610_0_0_2"/>
    <dbReference type="OrthoDB" id="8079at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008175">
        <property type="term" value="F:tRNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002939">
        <property type="term" value="P:tRNA N1-guanine methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.110">
        <property type="entry name" value="Met-10+ protein-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030382">
        <property type="entry name" value="MeTrfase_TRM5/TYW2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056743">
        <property type="entry name" value="TRM5-TYW2-like_MTfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056744">
        <property type="entry name" value="TRM5/TYW2-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23245:SF36">
        <property type="entry name" value="TRNA (GUANINE(37)-N1)-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23245">
        <property type="entry name" value="TRNA METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02475">
        <property type="entry name" value="TRM5-TYW2_MTfase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25133">
        <property type="entry name" value="TYW2_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51684">
        <property type="entry name" value="SAM_MT_TRM5_TYW2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="SAM-dependent methyltransferase TRM5/TYW2-type" evidence="6">
        <location>
            <begin position="23"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="273" mass="30938" checksum="A30EDF849CE97DF6" modified="2008-05-20" version="1">MALKRRLQGVVPPELLDKVPTSFEVVGSRGGAVAIVEIPPELEQYKHKVAEAIVGMNKHVKAVLRKMGGRTGDYRLYNFEVLIEGPTEVLHREHGYYIKVDPTKVYFSSRDQTDRLDVARRVGEGERVLYLFAGVAPYAIAIAKFAKPRLIVAVELNPWGFRYMVENFRINKIRNAVAVHGDVAEVGPLFRKKFDRVILTLPLGAYRYLPLALDCLEKGGVVHFYHTGKAEDPYREAEEIVRGVCPDCQIVGRRVVRDYAPGVYKVRVDVYKR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC34</accession>
    <name>RPO10_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA-directed RNA polymerase subunit Rpo10</fullName>
            <ecNumber evidence="1">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">DNA-directed RNA polymerase subunit N</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpo10</name>
        <name evidence="1" type="synonym">rpoN</name>
        <name type="ordered locus">Tneu_1973</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the RNA polymerase complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the archaeal Rpo10/eukaryotic RPB10 RNA polymerase subunit family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351307.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC34"/>
    <dbReference type="SMR" id="B1YC34"/>
    <dbReference type="STRING" id="444157.Tneu_1973"/>
    <dbReference type="GeneID" id="6165990"/>
    <dbReference type="KEGG" id="tne:Tneu_1973"/>
    <dbReference type="eggNOG" id="arCOG04244">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_143122_1_1_2"/>
    <dbReference type="OrthoDB" id="371754at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.60">
        <property type="entry name" value="Homeodomain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00250">
        <property type="entry name" value="RNApol_arch_Rpo10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023580">
        <property type="entry name" value="RNA_pol_su_RPB10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020789">
        <property type="entry name" value="RNA_pol_suN_Zn-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000268">
        <property type="entry name" value="RPABC5/Rpb10"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003089">
        <property type="entry name" value="PRK04016.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23431:SF3">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23431">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01194">
        <property type="entry name" value="RNA_pol_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005653">
        <property type="entry name" value="RNA_pol_N/8_sub"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46924">
        <property type="entry name" value="RNA polymerase subunit RPB10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01112">
        <property type="entry name" value="RNA_POL_N_8KD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0804">Transcription</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000100990" description="DNA-directed RNA polymerase subunit Rpo10">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00250"/>
        </source>
    </evidence>
    <sequence length="66" mass="7753" checksum="6B8A26219DC48068" modified="2008-05-20" version="1">MIIPVRCFTCGRPLGHLYPIFKRRVLAGERPGEVLDSLGVYRYCCRRTLLSHVEWIDDVLAYERRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC40</accession>
    <name>B1YC40_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cytidyltransferase-related domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1979</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351313.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC40"/>
    <dbReference type="STRING" id="444157.Tneu_1979"/>
    <dbReference type="GeneID" id="6165579"/>
    <dbReference type="KEGG" id="tne:Tneu_1979"/>
    <dbReference type="eggNOG" id="arCOG01222">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="eggNOG" id="arCOG01224">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1212640_0_0_2"/>
    <dbReference type="OrthoDB" id="1912at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.90">
        <property type="entry name" value="AF1782-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036809">
        <property type="entry name" value="AF1782-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050385">
        <property type="entry name" value="Archaeal_FAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023140">
        <property type="entry name" value="DUF357"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43793">
        <property type="entry name" value="FAD SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43793:SF1">
        <property type="entry name" value="FAD SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04010">
        <property type="entry name" value="DUF357"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158372">
        <property type="entry name" value="AF1782-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DUF357" evidence="4">
        <location>
            <begin position="7"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="Cytidyltransferase-like" evidence="3">
        <location>
            <begin position="89"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF04010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="226" mass="25703" checksum="19CE2CD1AB86C385" modified="2008-05-20" version="1">MDRVALYIRNLEETLNSLVLKDGAYKHIVELARAYLRDSKYYYSVGDRETALATVSYAEGLLDALKHMGVAEFVWRQPSEIKNAKTVMVAGTFEILHPGHLAYLREAWRRGYVTAVVSADENAERVKGRRIVIPQRQRAEVLSSLYFVHKVVHGRPGDIFDIFYEVKPDVVLLGPNQSVSEDVVKAQAKRRGVEVEVYRLPRLESCELCSTTKIIERILSTFSGCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC49</accession>
    <name>B1YC49_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcription elongation factor NusA-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1988</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351322.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC49"/>
    <dbReference type="STRING" id="444157.Tneu_1988"/>
    <dbReference type="GeneID" id="6165706"/>
    <dbReference type="KEGG" id="tne:Tneu_1988"/>
    <dbReference type="eggNOG" id="arCOG01761">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_132460_1_0_2"/>
    <dbReference type="OrthoDB" id="4111at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF005013">
        <property type="entry name" value="PRK06418.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="173" mass="19757" checksum="39778954F2580904" modified="2008-05-20" version="1">MVKIPFCEFCVKTRVLCQKCQSLIDSGRYSWLDVEVSDALLKVEKKINLSDVEYVKSYEVDDMVIVLMRNTKRIPRGAFMQLEKELSSLLRKNVKIVEHGHINEVIAQLVSPAKLLTISTSWLPDGTTETVVKIPSRELRRLPLKPERLQAIIGQISGANVKVELVRERELRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC50</accession>
    <name>B1YC50_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1989</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351323.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC50"/>
    <dbReference type="STRING" id="444157.Tneu_1989"/>
    <dbReference type="GeneID" id="6165741"/>
    <dbReference type="KEGG" id="tne:Tneu_1989"/>
    <dbReference type="eggNOG" id="arCOG01359">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_533842_0_0_2"/>
    <dbReference type="OrthoDB" id="358785at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.320">
        <property type="entry name" value="Photosystem II 12 kDa extrinsic protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="entry name" value="tm_1862 like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43324">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43324:SF1">
        <property type="entry name" value="RADICAL SAM CORE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01082">
        <property type="entry name" value="B12-binding_domain_containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81585">
        <property type="entry name" value="PsbU/PolX domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="1">
        <location>
            <begin position="179"/>
            <end position="445"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="565" mass="63091" checksum="4E60D256F20A5887" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC55</accession>
    <name>B1YC55_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Heavy-metal chelation domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1994</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351328.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC55"/>
    <dbReference type="STRING" id="444157.Tneu_1994"/>
    <dbReference type="GeneID" id="6165803"/>
    <dbReference type="KEGG" id="tne:Tneu_1994"/>
    <dbReference type="eggNOG" id="arCOG03445">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1369576_0_0_2"/>
    <dbReference type="OrthoDB" id="26329at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="201" mass="22348" checksum="4C685C2244B3F62A" modified="2008-05-20" version="1">MKLAVSIIRRDGVDICEGQVLARCCLEDMCADVPLDASIEPGLYELEKALENPALRICVEILTRQRERGIKALKVCKPKEADKCVKKLVEHVLSKYGGPVLIFGFNKRVAGNLFSFTYGYVADMGGQLEPYDFVDATDPYQLLDEVKAVVVAPGALHYVNVVELVRRAKELGKPVIMYGALSAIYKDLGIEYFCPYGLKIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCA8</accession>
    <name>B1YCA8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Syntaxin domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0474</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349841.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCA8"/>
    <dbReference type="GeneID" id="6166009"/>
    <dbReference type="KEGG" id="tne:Tneu_0474"/>
    <dbReference type="eggNOG" id="arCOG03724">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_109669_2_1_2"/>
    <dbReference type="OrthoDB" id="26995at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46579">
        <property type="entry name" value="Prefoldin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="60"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="133" mass="14996" checksum="B38DB607F737FE64" modified="2008-05-20" version="1">MWPWGVCYGLHGAVAQEALRTAVDKVVEKLREGKKLSTEDIFLLYLGTIVNELGGIRGEITRLEQRIDATNQRIDALAESLNKRIDTVAESLSRRIDETNRRIDALSARIDDVQKTLLEIQRLLVELLKAGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCE1</accession>
    <name>B1YCE1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase FkbM family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0511</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349874.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCE1"/>
    <dbReference type="STRING" id="444157.Tneu_0511"/>
    <dbReference type="GeneID" id="6165916"/>
    <dbReference type="KEGG" id="tne:Tneu_0511"/>
    <dbReference type="eggNOG" id="arCOG01400">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_999734_0_0_2"/>
    <dbReference type="OrthoDB" id="25645at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006342">
        <property type="entry name" value="FkbM_mtfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052514">
        <property type="entry name" value="SAM-dependent_MTase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01444">
        <property type="entry name" value="fkbM_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34203">
        <property type="entry name" value="METHYLTRANSFERASE, FKBM FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34203:SF15">
        <property type="entry name" value="SLL1173 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05050">
        <property type="entry name" value="Methyltransf_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase FkbM" evidence="1">
        <location>
            <begin position="104"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="262" mass="28842" checksum="935A83D6D5EB672D" modified="2008-05-20" version="1">MFRGLSATARSMGLGAVFREAARRALGVSYTWRGVRVDSTALFRLLRRLASAGHVVWGEGGYVYVRPRWTRYVLRVPRGDAGLLTVLLEDLEGMYRASARRVLDVGAYIGETALLFAERGAERVYAYEPVPKFFSVLRDVVEYNGLGGVVEMYNLGVGGGGRIRVGLEGPGTGLREGDLEIATMPWGEVLRRHGVDLAKVDCEGCEWWLMAQPCEVLRSVPQWLVEIHGPAAPLIEKFSGCGFSGVKVADLAYLISLYRLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCE9</accession>
    <name>B1YCE9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0519</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349882.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCE9"/>
    <dbReference type="STRING" id="444157.Tneu_0519"/>
    <dbReference type="GeneID" id="6165877"/>
    <dbReference type="KEGG" id="tne:Tneu_0519"/>
    <dbReference type="eggNOG" id="arCOG00954">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_095962_0_0_2"/>
    <dbReference type="OrthoDB" id="371936at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034457">
        <property type="entry name" value="Organic_radical-activating"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30352:SF5">
        <property type="entry name" value="PYRUVATE FORMATE-LYASE 1-ACTIVATING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30352">
        <property type="entry name" value="PYRUVATE FORMATE-LYASE-ACTIVATING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01067">
        <property type="entry name" value="SPASM/twitch_domain_containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="8">
        <location>
            <begin position="8"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="227"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="266" mass="28800" checksum="081694BFF80A67BE" modified="2008-05-20" version="1">MTLIYHITYYPRLRSAYLQFDGCNYVCPWCIRRLTPWDHHLPDAGGLKTRRHLTLGELVEVVSGLRERGAVEAVLGGGEPTVDPELPQVVKTLAGLRVRILTNGFSISEELLGVLRSCPACEVVVSVKTLDPARHLAYTGKPLGPVLANVKRLVEAGVAVKFETVLIPGLNDVEDVEEIARYIGEVAGPDAVLIIDPLIPIPGTPWRRPAPEEVEEAHRRASRYVKTARHGGGGPADVPLVVFPPPGGYQGSSRSSSGPPRPHTAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCF3</accession>
    <name>B1YCF3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0523</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349886.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCF3"/>
    <dbReference type="STRING" id="444157.Tneu_0523"/>
    <dbReference type="CAZy" id="GT2">
        <property type="family name" value="Glycosyltransferase Family 2"/>
    </dbReference>
    <dbReference type="GeneID" id="6165816"/>
    <dbReference type="KEGG" id="tne:Tneu_0523"/>
    <dbReference type="eggNOG" id="arCOG01389">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062567_0_0_2"/>
    <dbReference type="OrthoDB" id="43988at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43630">
        <property type="entry name" value="POLY-BETA-1,6-N-ACETYL-D-GLUCOSAMINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43630:SF1">
        <property type="entry name" value="POLY-BETA-1,6-N-ACETYL-D-GLUCOSAMINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="3">
        <location>
            <begin position="42"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="356" mass="38779" checksum="E11BC4FD57C3B643" modified="2008-05-20" version="1">MLVLAAALAAVHFGAPALYLLYLRAAPKKPLQTAAIYPKVAVVVPTYNEARNIEAKLEDVYSQSYPRDRMSIYVVDSASTDGTAEAAERWAAGRRDVRVVVLREPKRRGKAHALNTALAHLADEEVVVITDADSRWLDRDTLRRAVAYLAAADAVSCLKRPAGGGPTEEAYRTWYNRLRLAESLVHSTPVFHGELAAFRREAIAGGFPEDVGADDSYAAIRIAAAGGRAVTPPDVWCIEAVPQRGYPTWRLRRAQHLIQAFARALPNVAKAPPPYRVILAAEAYLHLFNPWLLPAAAALAAASGPPGLALLAAGAAALLYKPYRAWAAGQIYLMAAALRNIWNKELIWQKQEKPPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCG2</accession>
    <name>B1YCG2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">nicotinate-nucleotide diphosphorylase (carboxylating)</fullName>
            <ecNumber evidence="4">2.4.2.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0532</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from quinolinate: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the L-aspartate dehydrogenase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the NadC/ModD family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.19" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349895.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCG2"/>
    <dbReference type="STRING" id="444157.Tneu_0532"/>
    <dbReference type="GeneID" id="6165766"/>
    <dbReference type="KEGG" id="tne:Tneu_0532"/>
    <dbReference type="eggNOG" id="arCOG00254">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="eggNOG" id="arCOG01482">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_531718_0_0_2"/>
    <dbReference type="OrthoDB" id="115072at2157"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00331"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033735">
        <property type="term" value="F:aspartate dehydrogenase [NAD(P)+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004514">
        <property type="term" value="F:nicotinate-nucleotide diphosphorylase (carboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD+ biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034213">
        <property type="term" value="P:quinolinate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01568">
        <property type="entry name" value="QPRTase_NadC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.70:FF:000030">
        <property type="entry name" value="Nicotinate-nucleotide pyrophosphorylase, carboxylating"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.10">
        <property type="entry name" value="Dihydrodipicolinate Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.20">
        <property type="entry name" value="Quinolinate phosphoribosyl transferase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005106">
        <property type="entry name" value="Asp/hSer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002811">
        <property type="entry name" value="Asp_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004393">
        <property type="entry name" value="NadC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027277">
        <property type="entry name" value="NadC/ModD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036068">
        <property type="entry name" value="Nicotinate_pribotase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037128">
        <property type="entry name" value="Quinolinate_PRibosylTase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002638">
        <property type="entry name" value="Quinolinate_PRibosylTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022412">
        <property type="entry name" value="Quinolinate_PRibosylTrfase_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00078">
        <property type="entry name" value="nadC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32179">
        <property type="entry name" value="NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32179:SF3">
        <property type="entry name" value="NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01958">
        <property type="entry name" value="Asp_DH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03447">
        <property type="entry name" value="NAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01729">
        <property type="entry name" value="QRPTase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02749">
        <property type="entry name" value="QRPTase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55347">
        <property type="entry name" value="Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51690">
        <property type="entry name" value="Nicotinate/Quinolinate PRTase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54675">
        <property type="entry name" value="Nicotinate/Quinolinate PRTase N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Quinolinate phosphoribosyl transferase N-terminal" evidence="10">
        <location>
            <begin position="28"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="Quinolinate phosphoribosyl transferase C-terminal" evidence="8">
        <location>
            <begin position="106"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="Aspartate/homoserine dehydrogenase NAD-binding" evidence="11">
        <location>
            <begin position="285"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="domain" description="Aspartate dehydrogenase" evidence="9">
        <location>
            <begin position="413"/>
            <end position="488"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF03447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="512" mass="54593" checksum="F86D101B23C33999" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCH3</accession>
    <name>B1YCH3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">MscS Mechanosensitive ion channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0543</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349906.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCH3"/>
    <dbReference type="STRING" id="444157.Tneu_0543"/>
    <dbReference type="GeneID" id="6166175"/>
    <dbReference type="KEGG" id="tne:Tneu_0543"/>
    <dbReference type="eggNOG" id="arCOG01568">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074283_0_0_2"/>
    <dbReference type="OrthoDB" id="31543at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052702">
        <property type="entry name" value="MscS-like_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006685">
        <property type="entry name" value="MscS_channel_2nd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30347:SF1">
        <property type="entry name" value="MECHANOSENSITIVE CHANNEL MSCK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30347">
        <property type="entry name" value="POTASSIUM CHANNEL RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00924">
        <property type="entry name" value="MS_channel_2nd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="Sm-like ribonucleoproteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="Mechanosensitive ion channel MscS" evidence="2">
        <location>
            <begin position="127"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="325" mass="35725" checksum="0C661713E02BF048" modified="2008-05-20" version="1">MRGKRVAAIALSKLVLIAIVAVNIYYGAKVILPIVGLGLSQEQLDLLKSAILIVAGGLGVNVLGNAVVLYLRDNLREKAFAVGNVIKIVGIIAVVLYAVSISKLGAELALLGGTVTGLVLGLALQPILGNVFAGILILTTRFVEVGDTVRIVTSQLPYKVSDLPPYKYFSPDYVVPGFKGKVAEIGLLYSTLLLDMGHELKVPNMVLLSSAVVDYTPRWTEKQVVYIRVELPISVIDLDRLEEEIRSVLKGFNVVAVDYTEQSDKDHVIVRVKLEVPHGENWRRAKSEALKLLLRYRNERIEANLPRYLCLTRGILCDRYAQGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCM1</accession>
    <name>B1YCM1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DUF1512 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0595</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349954.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCM1"/>
    <dbReference type="STRING" id="444157.Tneu_0595"/>
    <dbReference type="GeneID" id="6165577"/>
    <dbReference type="KEGG" id="tne:Tneu_0595"/>
    <dbReference type="eggNOG" id="arCOG04181">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062565_0_0_2"/>
    <dbReference type="OrthoDB" id="15121at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009995">
        <property type="entry name" value="DUF1512"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056461">
        <property type="entry name" value="DUF1512_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056460">
        <property type="entry name" value="DUF1512_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07431">
        <property type="entry name" value="DUF1512"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23542">
        <property type="entry name" value="DUF1512_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016495">
        <property type="entry name" value="UCP016495"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1512" evidence="2">
        <location>
            <begin position="14"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1512" evidence="3">
        <location>
            <begin position="192"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF23542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="6">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="374" mass="41542" checksum="FCA3DFBCD27B3619" modified="2008-05-20" version="1">MYTQTGGYDSMWYLISMLIWFALIFMLQDLQMWRYLSQVSGFLSYLGQLLNTASANVLAALEKAKRREVQRQELEATLKRMVDFAVIEPTSLDPSGIVPKYKHILNTYVETYEREIGRLVEDGVAVKNMATAVEALRYMNLIYKVVDHYYKTARKYKAFYLVIQLTMLLPLLKELTETVNEAVSSFIRGSPIGDSAGPQVAYNVLSRCGSLVYHKAVKDTVVAECEYEGRKLYVIKAEGPGSTVGRLDEAVEYVFGELKAKPKYIVTVDAALRLEGEKTGEVAEGIGVAMGGVGVEKFNIESYATKYGVPLYAFLIKMRQSEALTAMTAEIYNAVQYTTKRVLEFITSQVQPGEAVLLIGVGNTVGVGQPPAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCM8</accession>
    <name>B1YCM8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Peptidase M42 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0602</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="8">Binds 2 divalent metal cations per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the peptidase M42 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349961.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCM8"/>
    <dbReference type="STRING" id="444157.Tneu_0602"/>
    <dbReference type="GeneID" id="6165530"/>
    <dbReference type="KEGG" id="tne:Tneu_0602"/>
    <dbReference type="eggNOG" id="arCOG01519">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047249_0_1_2"/>
    <dbReference type="OrthoDB" id="30642at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.40">
        <property type="entry name" value="Peptidase M42, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.10">
        <property type="entry name" value="Zn peptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008007">
        <property type="entry name" value="Peptidase_M42"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051464">
        <property type="entry name" value="Peptidase_M42_aminopept"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023367">
        <property type="entry name" value="Peptidase_M42_dom2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32481">
        <property type="entry name" value="AMINOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32481:SF0">
        <property type="entry name" value="AMINOPEPTIDASE YPDE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05343">
        <property type="entry name" value="Peptidase_M42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001123">
        <property type="entry name" value="PepA_GA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101821">
        <property type="entry name" value="Aminopeptidase/glucanase lid domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53187">
        <property type="entry name" value="Zn-dependent exopeptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="186"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="290"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR001123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001123-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001123-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="316" mass="34111" checksum="13BEFB81BC82A3AB" modified="2008-05-20" version="1">MSLEELTNALGVSGFEEEVRRRILSAVPNAEADDFGNLLAVDKSRVAFVAHMDEVGLLVTSIEEDGRMRFRKVGGVDDRILPGSSVVLYGDGFKVEGVIGIAPPHFQQQQSQISWQDLYIDVGAAGRAEVESMGIGPMTPAAFSRRYAEVGRYISATALDDRVGCWALLEAYRRGAQATYVWSVQEELGLLGARALSKRLEGKYAVVVDTTSCCHPNFTGSAKPGQGPVLRIFDNYGAYNNKLAKRILEIAKRRGIPIQISGGGGGTDAAAFFVSGIPAVAIGILSKYSHSPVEMVHKDDLKHAVELLVAISEDLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="33" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCP9</accession>
    <name>B1YCP9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0623</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCP9"/>
    <dbReference type="KEGG" id="tne:Tneu_0623"/>
    <dbReference type="eggNOG" id="arCOG12853">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_218954_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="35" mass="4165" checksum="C974EBFB670B5D8B" modified="2008-05-20" version="1">MEYVEAILRTLKIHAPDSEEVRRQVERILRELGLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCZ6</accession>
    <name>B1YCZ6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Large ribosomal subunit protein P1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpl12</name>
        <name evidence="6" type="ordered locus">Tneu_0720</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit. Homodimer, it forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Forms a heptameric L10(L12)2(L12)2(L12)2 complex, where L10 forms an elongated spine to which the L12 dimers bind in a sequential fashion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the eukaryotic ribosomal protein P1/P2 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350079.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCZ6"/>
    <dbReference type="STRING" id="444157.Tneu_0720"/>
    <dbReference type="GeneID" id="6165516"/>
    <dbReference type="KEGG" id="tne:Tneu_0720"/>
    <dbReference type="eggNOG" id="arCOG04287">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114656_2_0_2"/>
    <dbReference type="OrthoDB" id="3337at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006414">
        <property type="term" value="P:translational elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05832">
        <property type="entry name" value="Ribosomal_L12p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.10.1410:FF:000002">
        <property type="entry name" value="60S acidic ribosomal protein P2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01478">
        <property type="entry name" value="Ribosomal_L12_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038716">
        <property type="entry name" value="P1/P2_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027534">
        <property type="entry name" value="Ribosomal_P1/P2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022295">
        <property type="entry name" value="Ribosomal_P1_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03685">
        <property type="entry name" value="ribo_P1_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45696">
        <property type="entry name" value="60S ACIDIC RIBOSOMAL PROTEIN P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45696:SF10">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN P1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00428">
        <property type="entry name" value="Ribosomal_60s"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 6" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="73"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="81"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="107" mass="11208" checksum="0D5605DBA7653F2B" modified="2008-05-20" version="1">MEYIYGALLLHYAKQEINEENLTKVLQAAGISPDEVRVKTLVAALKEVNIEEAIKSAAFAPVAAAPAAAPTATAAAAPAAKAEEKKEEEEKKGPSEEEIAGSLASLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD53</accession>
    <name>B1YD53_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Homing endonuclease LAGLIDADG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0777</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD53"/>
    <dbReference type="KEGG" id="tne:Tneu_0777"/>
    <dbReference type="eggNOG" id="arCOG03156">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1536722_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.28.10">
        <property type="entry name" value="Homing endonucleases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027434">
        <property type="entry name" value="Homing_endonucl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004860">
        <property type="entry name" value="LAGLIDADG_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14528">
        <property type="entry name" value="LAGLIDADG_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55608">
        <property type="entry name" value="Homing endonucleases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Homing endonuclease LAGLIDADG" evidence="1">
        <location>
            <begin position="14"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="174" mass="20117" checksum="B25C6A235897BF82" modified="2008-05-20" version="1">MDIFQYVKALSAFDGYVDYRVGKNYEIVIADMSKEFLEEICNELRKYGVSCGVYASRRDRAFRLRIYGKESVDRILNSSLAPEVLIAAAIDAEGNVKKYRNQPFRTRIVVKSDMARRIEDALTALSIRYVKITRKGGRYTEIVVSGKEENQKLYRVVKIRHPQKLQVVGHYLNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD89</accession>
    <name>B1YD89_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Large ribosomal subunit protein uL4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpl4</name>
        <name evidence="7" type="ordered locus">Tneu_0814</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Forms part of the polypeptide exit tunnel.</text>
    </comment>
    <comment type="function">
        <text evidence="6">One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the universal ribosomal protein uL4 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD89"/>
    <dbReference type="STRING" id="444157.Tneu_0814"/>
    <dbReference type="KEGG" id="tne:Tneu_0814"/>
    <dbReference type="eggNOG" id="arCOG04071">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026535_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01328_A">
        <property type="entry name" value="Ribosomal_uL4_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002136">
        <property type="entry name" value="Ribosomal_uL4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023574">
        <property type="entry name" value="Ribosomal_uL4_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013000">
        <property type="entry name" value="Ribosomal_uL4_euk/arc_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045240">
        <property type="entry name" value="Ribosomal_uL4_euk/arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019970">
        <property type="entry name" value="Ribosomall_uL4-arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03672">
        <property type="entry name" value="rpl4p_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19431">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00573">
        <property type="entry name" value="Ribosomal_L4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52166">
        <property type="entry name" value="Ribosomal protein L4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00939">
        <property type="entry name" value="RIBOSOMAL_L1E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="284" mass="30996" checksum="3841BA4EA68AA513" modified="2008-05-20" version="1">MGAVMMDLLKFKQLDLSPYIQPGEKPPEKLKVYGPDGAYIADIDPPLHFMEPVRPDLIRRAYLSALSARFQPKGVYEGAGREHSCESFGVGLGIARIPRYKGSLWPRGCFAPNTRGGRRAHPPKVEKKLHEEINRKEKNLAIRSAIAATAYRSWVAARGHVVDKIPALPLVVVGDAEKVGRAKEARKLLEALGLWPDVERAAAGVKIRSGKGKRRGRRYKEPKSVLVVVSSADVPLAAAVRNFPGVDVVPVDGLNMLVLAPGGAPGRLTLWTVPAVEKLRGLYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDB9</accession>
    <name>B1YDB9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0845</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350202.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDB9"/>
    <dbReference type="GeneID" id="6164514"/>
    <dbReference type="KEGG" id="tne:Tneu_0845"/>
    <dbReference type="eggNOG" id="arCOG05690">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_833190_0_0_2"/>
    <dbReference type="OrthoDB" id="28614at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="333" mass="36963" checksum="99D7A6B6AB8BD73F" modified="2008-05-20" version="1">MDPQVLEARYHRAVFRGSEETLARDFMLRYGASWRDMWKASEGASEADVEAAEKNADLLAKLVESRIDDVETATIYAAYGRNLSLEKELELGLELLGRPGSLERLLRWGLVIHFDDEVAAAPPYLAKLLIALASRAPHAGLNLVEEMEVGDGAAMAFLEGLLTGEFDEELHRLFYGDPPAELRVGRLAMYKSGVGLVVNPAASQDELLEALLQIKERRAETLARALSLHGEYEFSREHRCGLQYLSVDGTAEKSGVVAVCPWLSYARRLWRMHNLVVVVEGRRPAEPPRVRTGVVFVKGGEAEVVKPTPPPKFLEYVVDVLYSVGFSVSEVEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDC2</accession>
    <name>B1YDC2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0848</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350205.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDC2"/>
    <dbReference type="STRING" id="444157.Tneu_0848"/>
    <dbReference type="GeneID" id="6164472"/>
    <dbReference type="KEGG" id="tne:Tneu_0848"/>
    <dbReference type="eggNOG" id="arCOG05691">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2393063_0_0_2"/>
    <dbReference type="OrthoDB" id="24024at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="99" mass="11377" checksum="DD95661891B7032B" modified="2008-05-20" version="1">MSRRRKMYYYEETPIGPISRTPVETKVFKYVDCSVVEKNATSLTAMCKPNTLIKVYRGEGEGGEYVVEFTDTDTGLTEKHRVDLSTAVLVRRYLESKSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDD8</accession>
    <name>B1YDD8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Miro domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0864</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350221.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDD8"/>
    <dbReference type="STRING" id="444157.Tneu_0864"/>
    <dbReference type="GeneID" id="6164593"/>
    <dbReference type="KEGG" id="tne:Tneu_0864"/>
    <dbReference type="eggNOG" id="arCOG00364">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144586_0_0_2"/>
    <dbReference type="OrthoDB" id="25234at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00882">
        <property type="entry name" value="Ras_like_GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001806">
        <property type="entry name" value="Small_GTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00071">
        <property type="entry name" value="Ras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00449">
        <property type="entry name" value="RASTRNSFRMNG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="161" mass="18014" checksum="DCAE57BB0A5AF2AE" modified="2008-05-20" version="1">MRRYSVAVLGVGGVGKTTYVFRLLGLSLKPRATLRPGIYRLYLSDKEVDFIDVPGQVAADVARNFSRTWSFYVDLMIYMYDVTDQASLYAIAELHSALLDRGINPYRKVVLVGNKRDLAEEVGVFIEGDEIAAAVGAAKIYYISAVRDPVEVLYRPLEENI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDG1</accession>
    <name>B1YDG1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0887</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDG1"/>
    <dbReference type="STRING" id="444157.Tneu_0887"/>
    <dbReference type="KEGG" id="tne:Tneu_0887"/>
    <dbReference type="eggNOG" id="arCOG05699">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1821093_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="124" mass="13866" checksum="48F87E115F8B4390" modified="2008-05-20" version="1">MHLYAKTAYIAAVARGVECRFEDGDLKRAAWLLAKLMDRVGRALKSRYYTYTGPLEVVEEAVRYRPYVSPTSTVEITLSGGRAAVVGGEFRRRFRTDVDVGGVLKKYIELLASCRGDETRLGDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDH1</accession>
    <name>B1YDH1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DNA-directed RNA polymerase subunit Rpo7</fullName>
            <ecNumber evidence="4">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">DNA-directed RNA polymerase subunit E</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpo7</name>
        <name evidence="4" type="synonym">rpoE</name>
        <name evidence="6" type="ordered locus">Tneu_0897</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the RNA polymerase complex. Forms a stalk with Rpo4 that extends from the main structure.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="4">Forms 2 domains with an elongated structure; Rpo4 packs into the hinge region between the 2 domains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the eukaryotic RPB7/RPC8 RNA polymerase subunit family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350254.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDH1"/>
    <dbReference type="STRING" id="444157.Tneu_0897"/>
    <dbReference type="GeneID" id="6164287"/>
    <dbReference type="KEGG" id="tne:Tneu_0897"/>
    <dbReference type="eggNOG" id="arCOG00675">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117966_0_0_2"/>
    <dbReference type="OrthoDB" id="7927at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04331">
        <property type="entry name" value="RNAP_E_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04460">
        <property type="entry name" value="S1_RpoE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.120">
        <property type="entry name" value="RNA polymerase Rpb7-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00865">
        <property type="entry name" value="RNApol_arch_Rpo7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036898">
        <property type="entry name" value="RNA_pol_Rpb7-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004519">
        <property type="entry name" value="RNAP_E/RPC8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046399">
        <property type="entry name" value="RNApol_Rpo7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045113">
        <property type="entry name" value="Rpb7-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005576">
        <property type="entry name" value="Rpb7-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006333">
        <property type="entry name" value="PRK08563.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00448">
        <property type="entry name" value="rpoE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12709:SF4">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12709">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE II, III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03876">
        <property type="entry name" value="SHS2_Rpb7-N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88798">
        <property type="entry name" value="N-terminal, heterodimerisation domain of RBP7 (RpoE)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="S1 motif" evidence="5">
        <location>
            <begin position="83"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="191" mass="21276" checksum="C15EFA454D16A75A" modified="2008-05-20" version="1">MPFRVVEAEDYVRIPPADFGKPLEDIALQQLKARYEGRVLREVGYVVAVLTAKVSREGKIVFGDGGTYHKALFTMLAYMPLDGEIVEGVVENVREMGMLVRIGPVLGFINKIHVMDEPNILFDASTKSYIGERTKRRVGVGDVVRARITGVSFTTPREGTDLLLRVTLTMRMPGLGKLEWVKEKKPAAKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDL7</accession>
    <name>B1YDL7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Extracellular solute-binding protein family 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0944</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350300.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDL7"/>
    <dbReference type="STRING" id="444157.Tneu_0944"/>
    <dbReference type="GeneID" id="6164399"/>
    <dbReference type="KEGG" id="tne:Tneu_0944"/>
    <dbReference type="eggNOG" id="arCOG00221">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032622_0_0_2"/>
    <dbReference type="OrthoDB" id="28291at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30006:SF24">
        <property type="entry name" value="SLL0237 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30006">
        <property type="entry name" value="THIAMINE-BINDING PERIPLASMIC PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="441"/>
            <end position="461"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="472" mass="52129" checksum="537388E20DBE8DDB" modified="2008-05-20" version="1">MRALLLLIAAVALAHAATVLTRADQASIDAALPILQRHLPDVRVIPADPTQWRGLIDRGGVDFLWAGAPLLYESLLREGYLAPMPDVPELREMPERAGGVPLKRVGPDGRVYYVVYALLGYVIGYSGEALAKAGVEPACSWADLASPNLTLYFIKTGSRPVALARPTKSTSTAAMMQLVTEIYGWDEGWRLLTAMAAHARFVDSSGAVRDAVRRGEALFGPMVDYYVFLAGLDYCIPRDGTDVLFDPIAVPRGANATAAAVLTRVFLSEVEKRLVDRYILPGNLALLDSPDVNRTKAALLKRHLEKLMASRVLAVPPEKSASYYHSFIYYYEATLVDLQDQLASVWGKTVEAYHEGKISRQQFERLWRLIAAPLNYTDPATGEATSFTYQVAAAINDRVARDPAYRDKLIQAWREAARERYRRAEAELESLLNPPRRPTPAPYAVAAAVALALAATIFYISRKRKIKNTVKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDQ3</accession>
    <name>B1YDQ3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0983</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDQ3"/>
    <dbReference type="STRING" id="444157.Tneu_0983"/>
    <dbReference type="KEGG" id="tne:Tneu_0983"/>
    <dbReference type="eggNOG" id="arCOG08858">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1418741_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="188" mass="20200" checksum="5B3D7F6831819C62" modified="2008-05-20" version="1">MKTLFVLAPLMALLVAYSLWGEAAAVRAPVSTGYIDMDFVDVKITHPATVPVGAGPTVVELNYMKITVDVGGSAPGNDGPPVLYIDVKNMYPGAKVTVNGYLRNDGTIPVRVEKCNFRSIGGAFAFKDVDLDFDIQVDVDAFKGGNAPPFTLMPGQSAYVVVYIRARNDARESVSVSAQFTCDYRQAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDR8</accession>
    <name>B1YDR8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CRISPR-associated protein Cas6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0999</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350351.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDR8"/>
    <dbReference type="STRING" id="444157.Tneu_0999"/>
    <dbReference type="GeneID" id="6165091"/>
    <dbReference type="KEGG" id="tne:Tneu_0999"/>
    <dbReference type="eggNOG" id="arCOG01439">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093724_0_0_2"/>
    <dbReference type="OrthoDB" id="373259at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1900">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019267">
        <property type="entry name" value="CRISPR-assoc_Cas6_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10040">
        <property type="entry name" value="CRISPR_Cas6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRISPR-associated protein Cas6 C-terminal" evidence="1">
        <location>
            <begin position="108"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="249" mass="27868" checksum="5F6BF8F26DFD0FA0" modified="2008-05-20" version="1">MIFRVALRGYALDPLALAGWTPRLVHGLLASRGIKPLSIWPPIVQGRPVWGRPAAYPPGVQVEVVYVAREPPAEKPDIVALGRARVAVEDVAVRWFEPKDIGANRLVLETVTPVQFAVKTRERKRAKLAYIPEPLRVFKWLVITAYKLGLAEKLDVKFIRWVYEYVDLADLRCHRPSCVVKVKYDGRRSLYGFYGVAKYVVQDDRYMDKLSYYVSLANFLGLGKSRGVGLGAVQFGVAVGDSRGSHGKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE03</accession>
    <name>B1YE03_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Respiratory chain protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1085</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350435.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE03"/>
    <dbReference type="STRING" id="444157.Tneu_1085"/>
    <dbReference type="GeneID" id="6165806"/>
    <dbReference type="KEGG" id="tne:Tneu_1085"/>
    <dbReference type="HOGENOM" id="CLU_1412419_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036197">
        <property type="entry name" value="NarG-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103501">
        <property type="entry name" value="Respiratory nitrate reductase 1 gamma chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="107"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="192" mass="19917" checksum="D30EA77F6356B262" modified="2008-05-20" version="1">MLAAFLAVFAVAAAVALHRAYRSYSTSPTVAAPQDLTRFLTMGALRDRRRRALALAFHAAVATSLGGHLFLLVEEVPPLLPRVGTAVGLAALALLAVLAAARGVRRAPVFASALATVATGVAMGLAAPREELVKLAWSWPASPSAAGLLLAVHVASASALALSLAYTCHISAPAVYLAARLVKKPKFKFINM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE17</accession>
    <name>B1YE17_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1099</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350449.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE17"/>
    <dbReference type="STRING" id="444157.Tneu_1099"/>
    <dbReference type="GeneID" id="6165567"/>
    <dbReference type="KEGG" id="tne:Tneu_1099"/>
    <dbReference type="eggNOG" id="arCOG00194">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="87732at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050763">
        <property type="entry name" value="ABC_transporter_ATP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42711">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42711:SF5">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN NATA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="7"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="274" mass="30277" checksum="B7A1558AE86158AA" modified="2008-05-20" version="1">MVKQYVLIVKGVWKFFGGVVANEDVSLRAGEGEVVSVLGPNGAGKTTLLRQIYGELKPDRGVVQIAGLSPRKAKERGLVGAVPQEASPFHGLKVVEHVEMAARLRGVPKGRARECAREAIYAVGLGGRERDLVMSLSGGMRRLVLVASAMACRPKLILLDEPTAGVDVQNRRRIWEAVKAAKEAGSAVVLTTHYIHEAEELSDVVYLLNRRVLMRGAPAELKRLLPWVEVRTDDRVVRVEWDKAVEIVAELARRRARFELREPTLEDVLTAVWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8J6</accession>
    <name>B1Y8J6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AAA ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1145</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350494.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8J6"/>
    <dbReference type="STRING" id="444157.Tneu_1145"/>
    <dbReference type="GeneID" id="6165711"/>
    <dbReference type="KEGG" id="tne:Tneu_1145"/>
    <dbReference type="eggNOG" id="arCOG00284">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_453183_0_0_2"/>
    <dbReference type="OrthoDB" id="10575at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd01127">
        <property type="entry name" value="TrwB_TraG_TraD_VirD4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002789">
        <property type="entry name" value="HerA_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051162">
        <property type="entry name" value="T4SS_component"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30121:SF1">
        <property type="entry name" value="AAA+ ATPASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30121">
        <property type="entry name" value="UNCHARACTERIZED PROTEIN YJGR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01935">
        <property type="entry name" value="DUF87"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="1">
        <location>
            <begin position="152"/>
            <end position="479"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="533" mass="58141" checksum="A3B09A850C7175DA" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8P2</accession>
    <name>B1Y8P2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Mg2+ and Co2+ transporter-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1193</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350540.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8P2"/>
    <dbReference type="STRING" id="444157.Tneu_1193"/>
    <dbReference type="GeneID" id="6166188"/>
    <dbReference type="KEGG" id="tne:Tneu_1193"/>
    <dbReference type="eggNOG" id="arCOG02266">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1286383_0_0_2"/>
    <dbReference type="OrthoDB" id="28779at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046873">
        <property type="term" value="F:metal ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.340">
        <property type="entry name" value="Magnesium transport protein CorA, transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045863">
        <property type="entry name" value="CorA_TM1_TM2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002523">
        <property type="entry name" value="MgTranspt_CorA/ZnTranspt_ZntB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01544">
        <property type="entry name" value="CorA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144083">
        <property type="entry name" value="Magnesium transport protein CorA, transmembrane region"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="162"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="193"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="8">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="213" mass="24030" checksum="FC2A61563F936801" modified="2008-05-20" version="1">MVYIFEEGGATVVQLPLVKVEEGEVKEEQIELVVDREGRVAKGPYATVQEAFQRALESLSAALHQTESFLDQLEYRLEMEEAVRPGEIYTASYLAHHLYYVASQLYNFGRELGRRGLVGHRAQNYSRALYRKALVLRRYARDLRLLYATMVQVSLNASMKKLTWLGTVALPALLITSIYGMNLKWLPLADSPPAVFAILAASTLAFAYLLNKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8R6</accession>
    <name>B1Y8R6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1218</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350564.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8R6"/>
    <dbReference type="STRING" id="444157.Tneu_1218"/>
    <dbReference type="GeneID" id="6166168"/>
    <dbReference type="KEGG" id="tne:Tneu_1218"/>
    <dbReference type="eggNOG" id="arCOG05612">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1656947_0_0_2"/>
    <dbReference type="OrthoDB" id="28411at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="152" mass="15427" checksum="2F3574B4AFB9EF47" modified="2008-05-20" version="1">MRARGLTTVESLLIAAAFIIVGVIGVLTFQGIGKSAAESLRANAIVTADRGGFDVTIEVLNGKTSGVYIRYGKSGSPGADLVTGRCIVANSGVFTVDSANIQPPLVAGQSATCRFGGELEPGAQYTYVVYAVDATSGKAVQIAKGVVTVGIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8T6</accession>
    <name>B1Y8T6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1238</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350584.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8T6"/>
    <dbReference type="STRING" id="444157.Tneu_1238"/>
    <dbReference type="GeneID" id="6166029"/>
    <dbReference type="KEGG" id="tne:Tneu_1238"/>
    <dbReference type="eggNOG" id="arCOG00926">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="18209at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015188">
        <property type="term" value="F:L-isoleucine transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015192">
        <property type="term" value="F:L-phenylalanine transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005304">
        <property type="term" value="F:L-valine transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042941">
        <property type="term" value="P:D-alanine transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015808">
        <property type="term" value="P:L-alanine transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903806">
        <property type="term" value="P:L-isoleucine import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903805">
        <property type="term" value="P:L-valine import across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051120">
        <property type="entry name" value="ABC_AA/LPS_Transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45772:SF7">
        <property type="entry name" value="AMINO ACID ABC TRANSPORTER ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45772">
        <property type="entry name" value="CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="230" mass="25219" checksum="5C2084D1EDEA4A43" modified="2008-05-20" version="1">MSAVLEVRGVYKRFGGVVALEDVSLAVAPGEVVAVVGPNGSGKTTLVNVISGYVAPDRGSVLLEGRDITRWSAERRVRAGVVRSFQFPLLFPNLTVEENLRVAASGLKPYTLGEVDRRVVEEALHLFDLEAVRRRRVTELSEGHRKLLDVALAFVFKPKVVLLDEPTSSVSSQEKFAVMEKIVEVVKKSGASAVVVEHDLEVVKKFTDRVVQMMAGRVVKVAKTAEWSHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8U7</accession>
    <name>B1Y8U7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1249</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350595.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8U7"/>
    <dbReference type="STRING" id="444157.Tneu_1249"/>
    <dbReference type="GeneID" id="6166144"/>
    <dbReference type="KEGG" id="tne:Tneu_1249"/>
    <dbReference type="eggNOG" id="arCOG08360">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1709206_0_0_2"/>
    <dbReference type="OrthoDB" id="28840at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="153" mass="17801" checksum="BFD88492975C375E" modified="2008-05-20" version="1">MERYLRKYGDAALIGDLLKLADSHGDSRNRFYEEVVGQLSRVVDMAESYIREESARLSHTLERLIGRVPEFRQLGLGDVEERLAALSRESEVVIEKLRARLEEIRGGKTAYLTLDELFDLIKELDELWDITRRFVQFYSQIYSDLAPLFLITT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8W0</accession>
    <name>B1Y8W0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Peroxiredoxin</fullName>
            <ecNumber evidence="7">1.11.1.24</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Thioredoxin peroxidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Thioredoxin-dependent peroxiredoxin</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1262</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>a hydroperoxide + [thioredoxin]-dithiol = an alcohol + [thioredoxin]-disulfide + H2O</text>
            <dbReference type="Rhea" id="RHEA:62620"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:30879"/>
            <dbReference type="ChEBI" id="CHEBI:35924"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.11.1.24"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodecamer. Pentamer of dimers that assemble into a ring structure.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="7">The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. Although the primary sequence of this enzyme is similar to those of the 1-Cys Prx6 enzymes, its catalytic properties resemble those of the typical 2-Cys Prxs and C(R) is provided by the other dimeric subunit to form an intersubunit disulfide. The disulfide is subsequently reduced by thioredoxin.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the peroxiredoxin family. Prx6 subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.24" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350608.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8W0"/>
    <dbReference type="STRING" id="444157.Tneu_1262"/>
    <dbReference type="GeneID" id="6165838"/>
    <dbReference type="KEGG" id="tne:Tneu_1262"/>
    <dbReference type="eggNOG" id="arCOG00312">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042529_4_4_2"/>
    <dbReference type="OrthoDB" id="6924at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008379">
        <property type="term" value="F:thioredoxin peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033554">
        <property type="term" value="P:cellular response to stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042744">
        <property type="term" value="P:hydrogen peroxide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1020.10">
        <property type="entry name" value="Antioxidant, Horf6, Chain A, domain2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00401">
        <property type="entry name" value="Peroxiredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050217">
        <property type="entry name" value="Peroxiredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024706">
        <property type="entry name" value="Peroxiredoxin_AhpC-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019479">
        <property type="entry name" value="Peroxiredoxin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022915">
        <property type="entry name" value="Peroxiredoxin_TDXH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009668">
        <property type="entry name" value="PRK13189.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10681">
        <property type="entry name" value="THIOREDOXIN PEROXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10681:SF128">
        <property type="entry name" value="THIOREDOXIN-DEPENDENT PEROXIDE REDUCTASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10417">
        <property type="entry name" value="1-cysPrx_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000239">
        <property type="entry name" value="AHPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0049">Antioxidant</keyword>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5 7 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3 7 10" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="6 7" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="9">
        <location>
            <begin position="1"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine sulfenic acid (-SOH) intermediate" evidence="7">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine sulfenic acid (-SOH) intermediate; for peroxidase activity" evidence="8">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Interchain (with Cys-208); in linked form" evidence="7">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Alternate" evidence="7">
        <location>
            <begin position="202"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Interchain (with Cys-49); in linked form" evidence="7">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000239-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="212" mass="24272" checksum="DF5347ED869675D8" modified="2008-05-20" version="1">MPEVKGPYLGMKIPEDLCFNTDAGRKCFRDYKGKWLLLFSHPGDFTPVCTTEFIAFAKKYDEFKKRGVELLGLSVDTDISHIEWKRQIKQLWGVEIPFPIIADVPDFQVSSLFNAIPPGTTVTVRALALIDPELKLAWFALYPIANGRNIDEILRIIDAIQFSYKHGYATPADWRPGDPVIVPPPHSYEEAEKRLKEPGIECKTWWFCTKKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8W6</accession>
    <name>B1Y8W6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1268</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 6">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350614.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8W6"/>
    <dbReference type="STRING" id="444157.Tneu_1268"/>
    <dbReference type="GeneID" id="6165625"/>
    <dbReference type="KEGG" id="tne:Tneu_1268"/>
    <dbReference type="eggNOG" id="arCOG04310">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_0_2_2"/>
    <dbReference type="OrthoDB" id="275197at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.140.10:FF:000001">
        <property type="entry name" value="Acyl-CoA dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="entry name" value="Acyl-CoA dehydrogenase/oxidase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="entry name" value="Butyryl-CoA Dehydrogenase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.140.10">
        <property type="entry name" value="Butyryl-CoA Dehydrogenase, subunit A, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43884">
        <property type="entry name" value="ACYL-COA DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43884:SF37">
        <property type="entry name" value="ACYL-COA DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="Acyl-CoA dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="Acyl-CoA dehydrogenase NM domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0274">FAD</keyword>
    <keyword evidence="3 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA dehydrogenase/oxidase N-terminal" evidence="9">
        <location>
            <begin position="7"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA oxidase/dehydrogenase middle" evidence="8">
        <location>
            <begin position="124"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA dehydrogenase/oxidase C-terminal" evidence="7">
        <location>
            <begin position="241"/>
            <end position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="405" mass="43896" checksum="030929D416FE5B79" modified="2008-05-20" version="1">MDFGLSREDKLFVESVRSFAERVIAPRWVEIDEGRWPMAEVAARLGEAGLLGMTLSSRYGGQEATFLQAALAVEELAYADPSLATPVYVLLETAWPYVVQRHGRDEAKEEVLPEVAAGRAFVGIASTEPQGGSDVASVQTKAVKEGGLWRLYGEKNMVTGVSTALALPYGGGAVAVARTGAPEDKHRGVTLFLALLKRRGRQTPGFTYRDWDEVGRRGLPTGYLTLEGLPVEDVFVVGELNGGFKIAMEGFNLARTVIGAASVGAARWLLDRGLEWIRQRSAFGRPIASYQSVSFKFAELYARLEAARLSVYKAAWIADRFYGGDVAFAVQDVATAGAVAKYLAVGTAVETALEVMKWFGGASYFRETNVARSLLGLLSYYVGAEGAENILKLIIARNTVGREFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y900</accession>
    <name>B1Y900_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ROK family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1302</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350648.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y900"/>
    <dbReference type="STRING" id="444157.Tneu_1302"/>
    <dbReference type="GeneID" id="6165556"/>
    <dbReference type="KEGG" id="tne:Tneu_1302"/>
    <dbReference type="eggNOG" id="arCOG04280">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036604_0_1_2"/>
    <dbReference type="OrthoDB" id="206224at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009384">
        <property type="term" value="F:N-acylmannosamine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008761">
        <property type="term" value="F:UDP-N-acetylglucosamine 2-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054671">
        <property type="entry name" value="GK_pyrobaculum-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF045551">
        <property type="entry name" value="GK_Pyrobac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964:SF149">
        <property type="entry name" value="BIFUNCTIONAL UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE_N-ACETYLMANNOSAMINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="ROK (REPRESSOR, ORF, KINASE) FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="297" mass="32287" checksum="BF71AEF7595C5FB5" modified="2008-05-20" version="1">MAERYLGVDIGATWTRVLLVDREGRVLRRAKFRTGVDPAAQVVEAVSGWEFDAVGVGSIGPLDLRSGWVVNSPNSPARRFPLVEPLKALGKPVAVANDCVAAVWGERVFKYGVENMVYVTLSTGVGVGAIVDGTLLLGKDGNAHELGHAVIQFMEGRRCGCGGRGHFEAYVGGAHIPSLYRELTGDDPLDPAEIFRRYREGEERARRFVDLWLEALAAGLATVAAAYDPELLIMGGSIALNNWDLISREVPRRLRAYLGVRPPELLQASFGDDEVAVGAAALVYKVPESLRRFGYPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9A8</accession>
    <name>B1Y9A8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Oxidized purine nucleoside triphosphate hydrolase</fullName>
            <ecNumber evidence="11">3.6.1.56</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="16">2-hydroxy-dATP diphosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="15">7,8-dihydro-8-oxoguanine triphosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="14">8-oxo-dGTPase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="17">Methylated purine nucleoside triphosphate hydrolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Nucleoside diphosphate-linked moiety X motif 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="23" type="ordered locus">Tneu_1412</name>
    </gene>
    <organism evidence="23 24">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="23" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="23">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="21">Oxidized purine nucleoside triphosphate hydrolase which is a prominent sanitizer of the oxidized nucleotide pool. Catalyzes the hydrolysis of 2-oxo-dATP (2-hydroxy-dATP) into 2-oxo-dAMP. Also has a significant hydrolase activity toward 2-oxo-ATP, 8-oxo-dGTP and 8-oxo-dATP. Through the hydrolysis of oxidized purine nucleoside triphosphates, prevents their incorporation into DNA and the subsequent transversions A:T to C:G and G:C to T:A. Also catalyzes the hydrolysis of methylated purine nucleoside triphosphate preventing their integration into DNA. Through this antimutagenic activity protects cells from oxidative stress.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>2-oxo-ATP + H2O = 2-oxo-AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:67392"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:71395"/>
            <dbReference type="ChEBI" id="CHEBI:172878"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="10">
            <dbReference type="Rhea" id="RHEA:67393"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>2-oxo-dATP + H2O = 2-oxo-dAMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:31583"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:63212"/>
            <dbReference type="ChEBI" id="CHEBI:77897"/>
            <dbReference type="EC" id="3.6.1.56"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="8">
            <dbReference type="Rhea" id="RHEA:31584"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>8-oxo-dATP + H2O = 8-oxo-dAMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:65396"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:71361"/>
            <dbReference type="ChEBI" id="CHEBI:172871"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="7">
            <dbReference type="Rhea" id="RHEA:65397"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>8-oxo-dGTP + H2O = 8-oxo-dGMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:31575"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:63224"/>
            <dbReference type="ChEBI" id="CHEBI:77896"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="9">
            <dbReference type="Rhea" id="RHEA:31576"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>N(6)-methyl-ATP + H2O = N(6)-methyl-AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:67608"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:144842"/>
            <dbReference type="ChEBI" id="CHEBI:172873"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="18">
            <dbReference type="Rhea" id="RHEA:67609"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="20">
            <text>N(6)-methyl-dATP + H2O = N(6)-methyl-dAMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:67604"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:169976"/>
            <dbReference type="ChEBI" id="CHEBI:172872"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="20">
            <dbReference type="Rhea" id="RHEA:67605"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="19">
            <text>O(6)-methyl-dGTP + H2O = O(6)-methyl-dGMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:67600"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:169974"/>
            <dbReference type="ChEBI" id="CHEBI:169975"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="19">
            <dbReference type="Rhea" id="RHEA:67601"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.56" evidence="11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350756.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9A8"/>
    <dbReference type="STRING" id="444157.Tneu_1412"/>
    <dbReference type="GeneID" id="6164621"/>
    <dbReference type="KEGG" id="tne:Tneu_1412"/>
    <dbReference type="eggNOG" id="arCOG01074">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037162_11_1_2"/>
    <dbReference type="OrthoDB" id="40462at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008413">
        <property type="term" value="F:8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008828">
        <property type="term" value="F:dATP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042262">
        <property type="term" value="P:DNA protection"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03427">
        <property type="entry name" value="NUDIX_MTH1_Nudt1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.79.10">
        <property type="entry name" value="Nucleoside Triphosphate Pyrophosphohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003563">
        <property type="entry name" value="8ODP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43758">
        <property type="entry name" value="7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43758:SF2">
        <property type="entry name" value="OXIDIZED PURINE NUCLEOSIDE TRIPHOSPHATE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01403">
        <property type="entry name" value="8OXTPHPHTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="Nudix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 23" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="24" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="22">
        <location>
            <begin position="1"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00024596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00026103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00026218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00030634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00030682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00031927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00032071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00048002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00048894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="ARBA" id="ARBA00049032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="ARBA" id="ARBA00053094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="22">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="EMBL" id="ACB40337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="24">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="158" mass="18207" checksum="DD36D7072B3092B2" modified="2008-05-20" version="1">MIYVETLLYVVKDGRVLLIRKKRGLGAGLFNGVGGKVKPGETPEEAAAREALEEVGVAPVGLEWRGLLEFWNFEDGAVESAHYVHVFVARGYRGELRETDEAAPVWFNVEEIPFGEMWEDDKFWLPVVLRGGRVYGRFEFESWRLKRWRLYKLLEETG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="95" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9M0</accession>
    <name>B1Y9M0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Thermosome subunit beta</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Chaperonin subunit beta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Thermosome subunit 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1525</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the TCP-1 chaperonin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350868.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9M0"/>
    <dbReference type="STRING" id="444157.Tneu_1525"/>
    <dbReference type="GeneID" id="6166140"/>
    <dbReference type="KEGG" id="tne:Tneu_1525"/>
    <dbReference type="eggNOG" id="arCOG01257">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008891_7_3_2"/>
    <dbReference type="OrthoDB" id="9362at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032991">
        <property type="term" value="C:protein-containing complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03343">
        <property type="entry name" value="cpn60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.560.10:FF:000017">
        <property type="entry name" value="T-complex protein 1 subunit eta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.7.10">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="entry name" value="GroEL-like equatorial domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.260.10">
        <property type="entry name" value="TCP-1-like chaperonin intermediate domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017998">
        <property type="entry name" value="Chaperone_TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002194">
        <property type="entry name" value="Chaperonin_TCP-1_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027409">
        <property type="entry name" value="GroEL-like_apical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027410">
        <property type="entry name" value="TCP-1-like_intermed_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053374">
        <property type="entry name" value="TCP-1_chaperonin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054827">
        <property type="entry name" value="thermosome_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012714">
        <property type="entry name" value="Thermosome_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041082">
        <property type="entry name" value="thermosome_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02339">
        <property type="entry name" value="thermosome_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041083">
        <property type="entry name" value="thermosome_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11353">
        <property type="entry name" value="CHAPERONIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00304">
        <property type="entry name" value="TCOMPLEXTCP1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52029">
        <property type="entry name" value="GroEL apical domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="GroEL equatorial domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54849">
        <property type="entry name" value="GroEL-intermediate domain like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00995">
        <property type="entry name" value="TCP1_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 8" id="KW-0143">Chaperone</keyword>
    <keyword evidence="2 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="530"/>
            <end position="553"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00073562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00076811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00076887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="553" mass="60058" checksum="4AD8B4888185502D" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9N5</accession>
    <name>RISB_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">6,7-dimethyl-8-ribityllumazine synthase</fullName>
            <shortName evidence="1">DMRL synthase</shortName>
            <shortName evidence="1">LS</shortName>
            <shortName evidence="1">Lumazine synthase</shortName>
            <ecNumber evidence="1">2.5.1.78</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ribH</name>
        <name type="ordered locus">Tneu_1540</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2S)-2-hydroxy-3-oxobutyl phosphate + 5-amino-6-(D-ribitylamino)uracil = 6,7-dimethyl-8-(1-D-ribityl)lumazine + phosphate + 2 H2O + H(+)</text>
            <dbReference type="Rhea" id="RHEA:26152"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58201"/>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
            <dbReference type="EC" id="2.5.1.78"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; riboflavin biosynthesis; riboflavin from 2-hydroxy-3-oxobutyl phosphate and 5-amino-6-(D-ribitylamino)uracil: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DMRL synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.78" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350883.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9N5"/>
    <dbReference type="SMR" id="B1Y9N5"/>
    <dbReference type="STRING" id="444157.Tneu_1540"/>
    <dbReference type="GeneID" id="6164826"/>
    <dbReference type="KEGG" id="tne:Tneu_1540"/>
    <dbReference type="eggNOG" id="arCOG01323">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089358_3_1_2"/>
    <dbReference type="OrthoDB" id="7610at2157"/>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00404"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009349">
        <property type="term" value="C:riboflavin synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000906">
        <property type="term" value="F:6,7-dimethyl-8-ribityllumazine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09211">
        <property type="entry name" value="Lumazine_synthase_archaeal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.960:FF:000003">
        <property type="entry name" value="6,7-dimethyl-8-ribityllumazine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.960">
        <property type="entry name" value="Lumazine/riboflavin synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00178">
        <property type="entry name" value="Lumazine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034964">
        <property type="entry name" value="LS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002180">
        <property type="entry name" value="LS/RS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036467">
        <property type="entry name" value="LS/RS_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00114">
        <property type="entry name" value="lumazine-synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21058:SF0">
        <property type="entry name" value="6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21058">
        <property type="entry name" value="6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE DMRL SYNTHASE LUMAZINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00885">
        <property type="entry name" value="DMRL_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52121">
        <property type="entry name" value="Lumazine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0686">Riboflavin biosynthesis</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000098241" description="6,7-dimethyl-8-ribityllumazine synthase">
        <location>
            <begin position="1"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>5-amino-6-(D-ribitylamino)uracil</name>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="43"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>5-amino-6-(D-ribitylamino)uracil</name>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="67"/>
            <end position="69"/>
        </location>
        <ligand>
            <name>5-amino-6-(D-ribitylamino)uracil</name>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="72"/>
            <end position="73"/>
        </location>
        <ligand>
            <name>(2S)-2-hydroxy-3-oxobutyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>5-amino-6-(D-ribitylamino)uracil</name>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>(2S)-2-hydroxy-3-oxobutyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00178"/>
        </source>
    </evidence>
    <sequence length="150" mass="16401" checksum="D507A7F28D7C259B" modified="2008-05-20" version="1">MVRLALVVAEFNYDITSLMLQKAIEHARFLGAEVTYVVKVPGVYDIPMVLKDVVAKSDVDAVATLGAVIQGATKHDELVAQQAARKILDIAVEVDKPITLGIIGHGANRMQALERVEEYARRAVEAAVKLARRKKLLKDAKYSGATVYVE</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9R0</accession>
    <name>PYRB_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aspartate carbamoyltransferase catalytic subunit</fullName>
            <ecNumber evidence="1">2.1.3.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Aspartate transcarbamylase</fullName>
            <shortName evidence="1">ATCase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pyrB</name>
        <name type="ordered locus">Tneu_0024</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the condensation of carbamoyl phosphate and aspartate to form carbamoyl aspartate and inorganic phosphate, the committed step in the de novo pyrimidine nucleotide biosynthesis pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>carbamoyl phosphate + L-aspartate = N-carbamoyl-L-aspartate + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:20013"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:32814"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="EC" id="2.1.3.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 2/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterooligomer of catalytic and regulatory chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.2" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349404.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9R0"/>
    <dbReference type="SMR" id="B1Y9R0"/>
    <dbReference type="STRING" id="444157.Tneu_0024"/>
    <dbReference type="GeneID" id="6166284"/>
    <dbReference type="KEGG" id="tne:Tneu_0024"/>
    <dbReference type="eggNOG" id="arCOG00911">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043846_1_2_2"/>
    <dbReference type="OrthoDB" id="7792at2157"/>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016597">
        <property type="term" value="F:amino acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004070">
        <property type="term" value="F:aspartate carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1370:FF:000001">
        <property type="entry name" value="Aspartate carbamoyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1370:FF:000002">
        <property type="entry name" value="Aspartate carbamoyltransferase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1370">
        <property type="entry name" value="Aspartate/ornithine carbamoyltransferase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00001">
        <property type="entry name" value="Asp_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006132">
        <property type="entry name" value="Asp/Orn_carbamoyltranf_P-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006130">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036901">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002082">
        <property type="entry name" value="Asp_carbamoyltransf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006131">
        <property type="entry name" value="Asp_carbamoyltransf_Asp/Orn-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00670">
        <property type="entry name" value="asp_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002032">
        <property type="entry name" value="PRK00856.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45753:SF6">
        <property type="entry name" value="ASPARTATE CARBAMOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45753">
        <property type="entry name" value="ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00185">
        <property type="entry name" value="OTCace"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02729">
        <property type="entry name" value="OTCace_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00100">
        <property type="entry name" value="AOTCASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00101">
        <property type="entry name" value="ATCASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53671">
        <property type="entry name" value="Aspartate/ornithine carbamoyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00097">
        <property type="entry name" value="CARBAMOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000088811" description="Aspartate carbamoyltransferase catalytic subunit">
        <location>
            <begin position="1"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="265"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="266"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00001"/>
        </source>
    </evidence>
    <sequence length="304" mass="35034" checksum="3A1488F1F6009B5B" modified="2008-05-20" version="1">MWRGRDVISARDFGRRDLEELFETARYMEKYSKSRLEFLRGRVMAVAFFEPSTRTRLSFEVAMRRLGGDVIGFWGAEGTSVEKGETLVDTVKMLDAYSDVIVVRHRYEGASKLAAEVAESPVINGGDGAFNHPTQAMLDVYTMWREFGTVDGLNVGLIGDLRHARTVNSLLETLTNFRVRVYLISPEYLRPRVETIDYVQSRGLKLSFHTNVEEVIHELDVLYVVRIQKERFIDPLEYEKVKGSYRITVDMLKNARRHLIILHPLPRVDEIDHRVDATPHARYFRQAALGVPLRMALLYLILQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9U6</accession>
    <name>B1Y9U6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">S-methyl-5'-thioadenosine phosphorylase</fullName>
            <ecNumber evidence="5">2.4.2.28</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">5'-methylthioadenosine phosphorylase</fullName>
            <shortName evidence="5">MTA phosphorylase</shortName>
            <shortName evidence="5">MTAP</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">mtnP</name>
        <name evidence="7" type="ordered locus">Tneu_1572</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the reversible phosphorylation of S-methyl-5'-thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>S-methyl-5'-thioadenosine + phosphate = 5-(methylsulfanyl)-alpha-D-ribose 1-phosphate + adenine</text>
            <dbReference type="Rhea" id="RHEA:11852"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58533"/>
            <dbReference type="EC" id="2.4.2.28"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; S-methyl-5-thio-alpha-D-ribose 1-phosphate from S-methyl-5'-thioadenosine (phosphorylase route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 5">Homohexamer. Dimer of a homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.28" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350915.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9U6"/>
    <dbReference type="STRING" id="444157.Tneu_1572"/>
    <dbReference type="GeneID" id="6166236"/>
    <dbReference type="KEGG" id="tne:Tneu_1572"/>
    <dbReference type="eggNOG" id="arCOG01327">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054456_0_2_2"/>
    <dbReference type="OrthoDB" id="7681at2157"/>
    <dbReference type="UniPathway" id="UPA00904">
        <property type="reaction ID" value="UER00873"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017061">
        <property type="term" value="F:S-methyl-5-thioadenosine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019509">
        <property type="term" value="P:L-methionine salvage from methylthioadenosine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006166">
        <property type="term" value="P:purine ribonucleoside salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd09010">
        <property type="entry name" value="MTAP_SsMTAPII_like_MTIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1580:FF:000012">
        <property type="entry name" value="Probable 6-oxopurine nucleoside phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="entry name" value="Nucleoside phosphorylase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01963">
        <property type="entry name" value="MTAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010044">
        <property type="entry name" value="MTAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018099">
        <property type="entry name" value="Purine_phosphorylase-2_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01694">
        <property type="entry name" value="MTAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006334">
        <property type="entry name" value="PRK08564.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42679">
        <property type="entry name" value="S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42679:SF3">
        <property type="entry name" value="S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="Purine and uridine phosphorylases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01240">
        <property type="entry name" value="PNP_MTAP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3 5" id="KW-0660">Purine salvage</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Nucleoside phosphorylase" evidence="6">
        <location>
            <begin position="22"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="71"/>
            <end position="72"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="104"/>
            <end position="105"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="204"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="227"/>
            <end position="229"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="5">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="5">
        <location>
            <position position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00063054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="280" mass="31156" checksum="F1D6C5616D5F154E" modified="2008-05-20" version="1">MAVKLTQPPRDPREIGFEEFPKIGIIGGSGLYDPGIFENAVEVQMHTPYGLPSDNVIVGRVSGRVVAFLPRHGRGHKYPPHRIPYRANIYALHALGVRSIVAVSAVGSLRPDYAPGDFVVPDQFVDMTKTREYTFYDGPRTCHISIGLEPFTQEIRKVLVEVAGRYNKTHDGGCYVCIEGPRFSTKAESRIWREVYGCDIIGMTLVPEINLARELGMCYGLIALVTDYDVWVPHQPVTAEAVEKMMIEKMGIIKRVIAEAIPRIPAELPKCGDVLKYACV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA19</accession>
    <name>B1YA19_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PUA domain containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0035</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349415.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA19"/>
    <dbReference type="STRING" id="444157.Tneu_0035"/>
    <dbReference type="GeneID" id="6164891"/>
    <dbReference type="KEGG" id="tne:Tneu_0035"/>
    <dbReference type="eggNOG" id="arCOG00991">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_116577_2_0_2"/>
    <dbReference type="OrthoDB" id="7576at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd21149">
        <property type="entry name" value="PUA_archaeosine_TGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.90">
        <property type="entry name" value="ArcTGT, C2 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.10">
        <property type="entry name" value="PUA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002478">
        <property type="entry name" value="PUA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036974">
        <property type="entry name" value="PUA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029402">
        <property type="entry name" value="TGT_C2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038250">
        <property type="entry name" value="TGT_C2_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01472">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14810">
        <property type="entry name" value="TGT_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00359">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88802">
        <property type="entry name" value="Pre-PUA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="PUA domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50890">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PUA" evidence="1">
        <location>
            <begin position="67"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="152" mass="16672" checksum="A32146559CF3ECB2" modified="2008-05-20" version="1">MSAVLNIIAYIYGRGTAEKLKGRRVEVEYNKAGRVRRVFIDGRLAFVLRNNDGYLLPTLYGASFLENRVVVRGEAAEYVAGGRNVPAKYIADVSSGSRANGEVAVVDAEGRLIAVGRLVYSSRELSLGRGYAVRVREALKDVTGKEPREPPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA85</accession>
    <name>B1YA85_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Histone deacetylase superfamily</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0101</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349480.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA85"/>
    <dbReference type="STRING" id="444157.Tneu_0101"/>
    <dbReference type="GeneID" id="6164362"/>
    <dbReference type="KEGG" id="tne:Tneu_0101"/>
    <dbReference type="eggNOG" id="arCOG00325">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090241_0_0_2"/>
    <dbReference type="OrthoDB" id="28966at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.800.20">
        <property type="entry name" value="Histone deacetylase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037138">
        <property type="entry name" value="His_deacetylse_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="Arginase/deacetylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="238"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="251"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="269" mass="29290" checksum="F7050363B4BB52D9" modified="2008-05-20" version="1">MLLVHADDGRWVARVLRELGAEAVEGVATWDEVRLIHSEMFVKAVAKHEAEVLAAAAVANAALAKGRAVFYVGGTAMAGLHAPRSNQLFNAAVYIAKRSGAAVISIDRHFPTGTWELHLEHGFPLYLVYGGAEGPTRRQLAGRREATAFPLPPGVGDGGFWKIARHVLEQWDGPVVIQLGFDIHREDPTGYLFASETFYHKLGRALAGREFYISIECPSTPRVLRAALEALLSGITGGPPPRADAGWESPEAAREVDRMLKSARRPARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="41" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAA6</accession>
    <name>B1YAA6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase, IS605 OrfB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0123</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349501.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAA6"/>
    <dbReference type="GeneID" id="6165973"/>
    <dbReference type="KEGG" id="tne:Tneu_0123"/>
    <dbReference type="eggNOG" id="arCOG00687">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053996_0_0_2"/>
    <dbReference type="OrthoDB" id="386650at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="236"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="287" mass="31444" checksum="EC0012BC54E3F656" modified="2008-05-20" version="1">MPFPPTTGSQHLFSPTLHASTGQVYRTLKLEIPWRLVEERPDVLDLAARMRLAAEEFARKLSKESMGKGRVGLAPELGRLLTLDRREPALKMAEEVLAKCGLGGLAGCGLFLRYAPSFKALPLGVGEKGPVVVDLEGGTVEIRWPGLSPFTIVKEKQGEVDKETAGEGRAQVRVPRRGEGRRGADLRRSLGLVLVREVQRVDPRALVVVNNVGHYVKVGLVAGGRAVETRKLPREVRRLSQKLERISADIKRLEEALSRYAESFRRAVALTTSATPCPLSTRANTSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAB8</accession>
    <name>B1YAB8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1645</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350986.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAB8"/>
    <dbReference type="STRING" id="444157.Tneu_1645"/>
    <dbReference type="GeneID" id="6165634"/>
    <dbReference type="KEGG" id="tne:Tneu_1645"/>
    <dbReference type="eggNOG" id="arCOG00186">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_92_0_2"/>
    <dbReference type="OrthoDB" id="18209at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03216">
        <property type="entry name" value="ABC_Carb_Monos_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03215">
        <property type="entry name" value="ABC_Carb_Monos_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050107">
        <property type="entry name" value="ABC_carbohydrate_import_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43790">
        <property type="entry name" value="CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43790:SF9">
        <property type="entry name" value="GALACTOFURANOSE TRANSPORTER ATP-BINDING PROTEIN YTFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="3"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="253"/>
            <end position="478"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="478" mass="52149" checksum="7D103FBEB1AE0A9D" modified="2008-05-20" version="1">MRLELRDIHKVFSDGTHALRGVTLEVLPGEVLALLGENGAGKTTLMKIAAGIYKPTSGDIYIDGRPVKMRSARDALKLGIAMVHQHLSLIPGLTAMENLAIVEGAGLRPISAELKTRALKVAEELGFEVDWDRDVEELPLGVRQRVEIVKALAWGADLLILDEPTTVLTPPEVKPLFQVIRRLKEMGKSVVYITHKIPEVLEIADRVVVLRRGVKTAEFTPPYDPKRLVESMVGELKTESVAREGKPGERPVLEVEDLWIYEGGRAVLQGVSLRVREREILAVVGVEGNGQEQLVEAVVGVRRGRGLVKVHGGLAYIPDDRQRKALLMELSLVENAIVGREREFARRGLISWKLAAEYTEGLIREFGIVTPGPWASVRQLSGGNQQKLVVGRELGRGAKLIVAHQPTRGLDVATTEHVHSLLIKARNGGAGVLLVTSDLDEAYKLADTIAVIYRGRIAALGPAGEMGVELVGRKMAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAD7</accession>
    <name>B1YAD7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1664</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351005.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAD7"/>
    <dbReference type="STRING" id="444157.Tneu_1664"/>
    <dbReference type="GeneID" id="6166276"/>
    <dbReference type="KEGG" id="tne:Tneu_1664"/>
    <dbReference type="eggNOG" id="arCOG05120">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1080107_0_0_2"/>
    <dbReference type="OrthoDB" id="5620at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016771">
        <property type="entry name" value="Fe-S_OxRdtase_rSAM_TM0948_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050377">
        <property type="entry name" value="Radical_SAM_PqqE_MftC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11228">
        <property type="entry name" value="RADICAL SAM DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11228:SF34">
        <property type="entry name" value="TUNGSTEN-CONTAINING ALDEHYDE FERREDOXIN OXIDOREDUCTASE COFACTOR MODIFYING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF020275">
        <property type="entry name" value="RadSAM_TM0948_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01067">
        <property type="entry name" value="SPASM/twitch_domain_containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="31"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="254" mass="29064" checksum="3636A98DDD90080E" modified="2008-05-20" version="1">MINPERLLELVERYTVKAEGGVVYRRYRRFRADRWYGGIATADVVGCNLRCGMCWAWRNTSFVLTAGQWMPPEEVAERLRKIARERGYEQVRISGGEPLIAPRHALAVIDELRDYVFVVETNGILIDRALARELAARPNAVVRVSIKGATPEEFEKITRSPRAYFHRQLEAIRHLLESGLTPCRDVYPAAMLGFSTEESERDLKRRLEAVDPRLPQCLDVEYVILYPHVVKLMETRGLKPIRAVTPSGIPAFMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAG4</accession>
    <name>B1YAG4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1691</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAG4"/>
    <dbReference type="STRING" id="444157.Tneu_1691"/>
    <dbReference type="KEGG" id="tne:Tneu_1691"/>
    <dbReference type="eggNOG" id="arCOG05656">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1507441_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="164" mass="18014" checksum="39EDFB76D79807F3" modified="2008-05-20" version="1">MVRRVAFNVALFERGDITVVDAMYRERGDVVLSCGDYRCVARELFTALPKLLGGGSLGVDLGAARNGLAYVWRGEPVLHAVVDWQTVEAVLRNAGPLEIYIGSSPYVDVKKAAALAGCREVRLVDELAASWSRRWIRARYPELEEDEVDALAFTYYGGVAASIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAG7</accession>
    <name>B1YAG7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Nucleotidyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1694</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>N-acetyl-alpha-D-glucosamine 1-phosphate + UTP + H(+) = UDP-N-acetyl-alpha-D-glucosamine + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:13509"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:57776"/>
            <dbReference type="EC" id="2.7.7.23"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>alpha-D-glucosamine 1-phosphate + acetyl-CoA = N-acetyl-alpha-D-glucosamine 1-phosphate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13725"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57776"/>
            <dbReference type="ChEBI" id="CHEBI:58516"/>
            <dbReference type="EC" id="2.3.1.157"/>
        </reaction>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351035.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAG7"/>
    <dbReference type="STRING" id="444157.Tneu_1694"/>
    <dbReference type="GeneID" id="6165231"/>
    <dbReference type="KEGG" id="tne:Tneu_1694"/>
    <dbReference type="eggNOG" id="arCOG00666">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029499_0_1_2"/>
    <dbReference type="OrthoDB" id="15372at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019134">
        <property type="term" value="F:glucosamine-1-phosphate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003977">
        <property type="term" value="F:UDP-N-acetylglucosamine diphosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.10.10">
        <property type="entry name" value="Hexapeptide repeat proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050065">
        <property type="entry name" value="GlmU-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056729">
        <property type="entry name" value="GMPPB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43584:SF8">
        <property type="entry name" value="N-ACETYLMURAMATE ALPHA-1-PHOSPHATE URIDYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43584">
        <property type="entry name" value="NUCLEOTIDYL TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25087">
        <property type="entry name" value="GMPPB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="Trimeric LpxA-like enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MobA-like NTP transferase" evidence="7">
        <location>
            <begin position="6"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="Mannose-1-phosphate guanyltransferase C-terminal" evidence="8">
        <location>
            <begin position="229"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00048247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00048493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF25087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="363" mass="38621" checksum="90BC071FE5F9361F" modified="2008-05-20" version="1">MKIAPVVLAGGRPGPFEKLTGPLPKTYVRVGGRRLYQYAADPLAATFGRVYVVTPHPERGPYIYVEEKGQGIEQAIAAAESHLGAETHILLAYGDVYVDPAAFRTLVESAISAGADGAILAVPRKTTKGYGAVETKPGGLLAKIGGESQWIYAGAALLPRDVAKAAAQAGFYEALNEAAKNKKIAVAPWGGVWHDVNYPEDLLPLLEHVAPRHTYIAEGARVSPTAVLQGPVVVEEQAEVDHYAVVKGPAYIGKRAFVGSHSLVRNYAYIEEEAVVGSAAEISHSLIGQRATVGRASFISYSVVGEEAVVEPNAITMSVLREGRERLEPVEVRGARYYKLGALIPRGARIPAAAVLKPGTGWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAH1</accession>
    <name>B1YAH1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">TsaA-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1700</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the tRNA methyltransferase O family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351039.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAH1"/>
    <dbReference type="GeneID" id="6166132"/>
    <dbReference type="KEGG" id="tne:Tneu_1700"/>
    <dbReference type="eggNOG" id="arCOG00761">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013458_2_1_2"/>
    <dbReference type="OrthoDB" id="40408at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd09281">
        <property type="entry name" value="UPF0066"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.70">
        <property type="entry name" value="YaeB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023370">
        <property type="entry name" value="TrmO-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040372">
        <property type="entry name" value="YaeB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036413">
        <property type="entry name" value="YaeB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036414">
        <property type="entry name" value="YaeB_N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00104">
        <property type="entry name" value="tRNA_TsaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12818">
        <property type="entry name" value="TRNA (ADENINE(37)-N6)-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12818:SF0">
        <property type="entry name" value="TRNA (ADENINE(37)-N6)-METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01980">
        <property type="entry name" value="TrmO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118196">
        <property type="entry name" value="YaeB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51668">
        <property type="entry name" value="TSAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="TsaA-like" evidence="3">
        <location>
            <begin position="7"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00033753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="160" mass="18449" checksum="084FE7A03F6E499F" modified="2008-05-20" version="1">MSCPICLRPVGVVEVGLPRLGRVDKYDFVSVIRIFDEYVEGLGGLEEYSHAFIIWLFHETPGVRLRLRPWGREDFPEVGIFATRFTQRPNPIALSIVKIVEVDPPRLRVLGLDAWSGSPVLDIKPYDHLDVVNEFRTPDWFEEFFKETRGGLPRWLGPSR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2016-09-07" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAL1</accession>
    <name>FBPAP_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Fructose-1,6-bisphosphate aldolase/phosphatase</fullName>
            <shortName evidence="2">FBP A/P</shortName>
            <shortName evidence="5 6">FBP aldolase/phosphatase</shortName>
            <ecNumber evidence="3 4">3.1.3.11</ecNumber>
            <ecNumber evidence="3 4">4.1.2.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">fbp</name>
        <name evidence="10" type="ordered locus">Tneu_0133</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <reference key="2">
        <citation type="journal article" date="2010" name="Nature" volume="464" first="1077" last="1081">
            <title>Fructose 1,6-bisphosphate aldolase/phosphatase may be an ancestral gluconeogenic enzyme.</title>
            <authorList>
                <person name="Say R.F."/>
                <person name="Fuchs G."/>
            </authorList>
            <dbReference type="PubMed" id="20348906"/>
            <dbReference type="DOI" id="10.1038/nature08884"/>
        </citation>
        <scope>FUNCTION AS BOTH FBPASE AND FBP ALDOLASE</scope>
        <scope>CATALYTIC ACTIVITY</scope>
        <scope>PATHWAY</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <reference key="3">
        <citation type="journal article" date="2011" name="Nature" volume="478" first="534" last="537">
            <title>Active-site remodelling in the bifunctional fructose-1,6-bisphosphate aldolase/phosphatase.</title>
            <authorList>
                <person name="Du J."/>
                <person name="Say R.F."/>
                <person name="Lu W."/>
                <person name="Fuchs G."/>
                <person name="Einsle O."/>
            </authorList>
            <dbReference type="PubMed" id="21983965"/>
            <dbReference type="DOI" id="10.1038/nature10458"/>
        </citation>
        <scope>X-RAY CRYSTALLOGRAPHY (1.30 ANGSTROMS) OF WILD-TYPE AND MUTANT PHE-229 IN COMPLEXES WITH MAGNESIUM; DHAP; FBP AND F6P</scope>
        <scope>FUNCTION AS BOTH FBPASE AND FBP ALDOLASE</scope>
        <scope>CATALYTIC ACTIVITY</scope>
        <scope>COFACTOR</scope>
        <scope>DOMAIN</scope>
        <scope>MUTAGENESIS OF TYR-229 AND ASP-297</scope>
        <scope>REACTION MECHANISM</scope>
        <scope>ACTIVE SITE</scope>
        <scope>SCHIFF BASE FORMATION WITH DHAP</scope>
        <scope>SUBUNIT</scope>
    </reference>
    <comment type="function">
        <text evidence="3 4">Catalyzes two subsequent steps in gluconeogenesis: the aldol condensation of dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3-phosphate (GA3P) to fructose-1,6-bisphosphate (FBP), and the dephosphorylation of FBP to fructose-6-phosphate (F6P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>beta-D-fructose 1,6-bisphosphate + H2O = beta-D-fructose 6-phosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:11064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="EC" id="3.1.3.11"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>beta-D-fructose 1,6-bisphosphate = D-glyceraldehyde 3-phosphate + dihydroxyacetone phosphate</text>
            <dbReference type="Rhea" id="RHEA:14729"/>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.1.2.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="8">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homooctamer; dimer of tetramers.</text>
    </comment>
    <comment type="domain">
        <text evidence="4">Consists of a single catalytic domain, but remodels its active-site architecture via a large structural change to exhibit dual activities.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the FBP aldolase/phosphatase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.11" evidence="3 4"/>
    <dbReference type="EC" id="4.1.2.13" evidence="3 4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349511.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="PDB" id="3T2B">
        <property type="method" value="X-ray"/>
        <property type="resolution" value="1.52 A"/>
        <property type="chains" value="A=1-399"/>
    </dbReference>
    <dbReference type="PDB" id="3T2C">
        <property type="method" value="X-ray"/>
        <property type="resolution" value="1.30 A"/>
        <property type="chains" value="A=1-399"/>
    </dbReference>
    <dbReference type="PDB" id="3T2D">
        <property type="method" value="X-ray"/>
        <property type="resolution" value="1.36 A"/>
        <property type="chains" value="A=1-399"/>
    </dbReference>
    <dbReference type="PDB" id="3T2E">
        <property type="method" value="X-ray"/>
        <property type="resolution" value="1.66 A"/>
        <property type="chains" value="A=1-399"/>
    </dbReference>
    <dbReference type="PDB" id="3T2F">
        <property type="method" value="X-ray"/>
        <property type="resolution" value="1.90 A"/>
        <property type="chains" value="A=1-399"/>
    </dbReference>
    <dbReference type="PDB" id="3T2G">
        <property type="method" value="X-ray"/>
        <property type="resolution" value="3.00 A"/>
        <property type="chains" value="A=1-399"/>
    </dbReference>
    <dbReference type="PDBsum" id="3T2B"/>
    <dbReference type="PDBsum" id="3T2C"/>
    <dbReference type="PDBsum" id="3T2D"/>
    <dbReference type="PDBsum" id="3T2E"/>
    <dbReference type="PDBsum" id="3T2F"/>
    <dbReference type="PDBsum" id="3T2G"/>
    <dbReference type="AlphaFoldDB" id="B1YAL1"/>
    <dbReference type="SMR" id="B1YAL1"/>
    <dbReference type="DIP" id="DIP-59163N"/>
    <dbReference type="STRING" id="444157.Tneu_0133"/>
    <dbReference type="MoonProt" id="B1YAL1"/>
    <dbReference type="GeneID" id="6164372"/>
    <dbReference type="KEGG" id="tne:Tneu_0133"/>
    <dbReference type="eggNOG" id="arCOG04180">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041630_0_0_2"/>
    <dbReference type="OrthoDB" id="5829at2157"/>
    <dbReference type="BRENDA" id="3.1.3.11">
        <property type="organism ID" value="6328"/>
    </dbReference>
    <dbReference type="BRENDA" id="4.1.2.13">
        <property type="organism ID" value="6328"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="EvolutionaryTrace" id="B1YAL1"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042132">
        <property type="term" value="F:fructose 1,6-bisphosphate 1-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004332">
        <property type="term" value="F:fructose-bisphosphate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02067">
        <property type="entry name" value="FBP_aldolase_phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002803">
        <property type="entry name" value="FBPase_V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036076">
        <property type="entry name" value="FBPase_V_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041126">
        <property type="entry name" value="FBP_aldo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38341">
        <property type="entry name" value="FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE/PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38341:SF1">
        <property type="entry name" value="FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE_PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01950">
        <property type="entry name" value="FBPase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015647">
        <property type="entry name" value="FBPtase_archl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111249">
        <property type="entry name" value="Sulfolobus fructose-1,6-bisphosphatase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="evidence at protein level"/>
    <keyword id="KW-0002">3D-structure</keyword>
    <keyword id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword id="KW-0312">Gluconeogenesis</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0704">Schiff base</keyword>
    <feature type="chain" id="PRO_0000437183" description="Fructose-1,6-bisphosphate aldolase/phosphatase">
        <location>
            <begin position="1"/>
            <end position="399"/>
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    </feature>
    <feature type="active site" description="Proton acceptor; for FBP phosphatase activity" evidence="1">
        <location>
            <position position="11"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor; for FBP aldolase activity" evidence="9">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with DHAP; for FBP aldolase activity" evidence="4">
        <location>
            <position position="232"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13 14 15">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="4 15">
        <location>
            <position position="18"/>
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        <ligand>
            <name>beta-D-fructose 1,6-bisphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 14">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>dihydroxyacetone phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13 14 15">
        <location>
            <position position="18"/>
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        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13 14 15">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13 14 15">
        <location>
            <position position="52"/>
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        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13 14 15">
        <location>
            <position position="53"/>
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        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="4 15">
        <location>
            <position position="91"/>
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        <ligand>
            <name>beta-D-fructose 1,6-bisphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14 15 16">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="4 15">
        <location>
            <begin position="104"/>
            <end position="105"/>
        </location>
        <ligand>
            <name>beta-D-fructose 1,6-bisphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13 14 15">
        <location>
            <position position="132"/>
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        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="4 15">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>beta-D-fructose 1,6-bisphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 14">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>dihydroxyacetone phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="232"/>
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        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="233"/>
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        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="233"/>
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        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>4</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13 14 15">
        <location>
            <position position="234"/>
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        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
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    <feature type="binding site" evidence="4">
        <location>
            <position position="234"/>
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        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>3</label>
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    <feature type="binding site" evidence="4">
        <location>
            <begin position="242"/>
            <end position="243"/>
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        <ligand>
            <name>beta-D-fructose 1,6-bisphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
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    <feature type="binding site" description="in other chain" evidence="4 15">
        <location>
            <position position="266"/>
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        <ligand>
            <name>beta-D-fructose 1,6-bisphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 14">
        <location>
            <position position="266"/>
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        <ligand>
            <name>dihydroxyacetone phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
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    <feature type="binding site" description="in other chain" evidence="4 15">
        <location>
            <position position="297"/>
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        <ligand>
            <name>beta-D-fructose 1,6-bisphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <note>ligand shared between dimeric partners</note>
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    <feature type="binding site" evidence="4 14">
        <location>
            <position position="297"/>
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        <ligand>
            <name>dihydroxyacetone phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
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    <feature type="binding site" description="in other chain" evidence="4 15">
        <location>
            <position position="358"/>
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        <ligand>
            <name>beta-D-fructose 1,6-bisphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <note>ligand shared between dimeric partners</note>
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        <original>Y</original>
        <variation>F</variation>
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            <position position="229"/>
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            <position position="297"/>
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            <begin position="2"/>
            <end position="10"/>
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    <feature type="strand" evidence="17">
        <location>
            <begin position="14"/>
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    <feature type="helix" evidence="17">
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            <begin position="23"/>
            <end position="38"/>
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    <feature type="strand" evidence="17">
        <location>
            <begin position="43"/>
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    <feature type="strand" evidence="17">
        <location>
            <begin position="53"/>
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        <location>
            <begin position="67"/>
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    <feature type="turn" evidence="17">
        <location>
            <begin position="84"/>
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    <feature type="turn" evidence="17">
        <location>
            <begin position="92"/>
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        <location>
            <begin position="99"/>
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        <location>
            <begin position="102"/>
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    <feature type="strand" evidence="17">
        <location>
            <begin position="112"/>
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    <feature type="strand" evidence="17">
        <location>
            <begin position="122"/>
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    <feature type="helix" evidence="17">
        <location>
            <begin position="140"/>
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    <feature type="turn" evidence="17">
        <location>
            <begin position="150"/>
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        <location>
            <begin position="155"/>
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            <begin position="160"/>
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    <feature type="strand" evidence="17">
        <location>
            <begin position="166"/>
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    <feature type="turn" evidence="17">
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            <begin position="173"/>
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            <begin position="197"/>
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            <begin position="200"/>
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            <begin position="208"/>
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    <feature type="strand" evidence="17">
        <location>
            <begin position="213"/>
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    <feature type="helix" evidence="17">
        <location>
            <begin position="222"/>
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    <feature type="strand" evidence="18">
        <location>
            <begin position="228"/>
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    <feature type="strand" evidence="17">
        <location>
            <begin position="236"/>
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    <feature type="strand" evidence="20">
        <location>
            <begin position="242"/>
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            <begin position="248"/>
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    <feature type="strand" evidence="17">
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            <begin position="260"/>
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    <feature type="helix" evidence="17">
        <location>
            <begin position="265"/>
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    <feature type="strand" evidence="17">
        <location>
            <begin position="269"/>
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    <feature type="strand" evidence="17">
        <location>
            <begin position="279"/>
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    <feature type="turn" evidence="17">
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            <begin position="283"/>
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    <feature type="strand" evidence="17">
        <location>
            <begin position="287"/>
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            <begin position="301"/>
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    <feature type="strand" evidence="17">
        <location>
            <begin position="313"/>
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            <begin position="324"/>
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        <source>
            <dbReference type="UniProtKB" id="F9VMT6"/>
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            <dbReference type="HAMAP-Rule" id="MF_02067"/>
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            <dbReference type="EMBL" id="ACB39090.1"/>
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        <source>
            <dbReference type="EMBL" id="ACB39090.1"/>
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    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
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    <evidence type="ECO:0007744" key="13">
        <source>
            <dbReference type="PDB" id="3T2B"/>
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        <source>
            <dbReference type="PDB" id="3T2C"/>
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            <dbReference type="PDB" id="3T2D"/>
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            <dbReference type="PDB" id="3T2E"/>
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            <dbReference type="PDB" id="3T2C"/>
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            <dbReference type="PDB" id="3T2D"/>
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    <evidence type="ECO:0007829" key="20">
        <source>
            <dbReference type="PDB" id="3T2G"/>
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    <sequence length="399" mass="44327" checksum="054A000B12A0453A" modified="2008-05-20" version="1">MRVTVSIIKADVGGFPGHAHVHPKMLEYAAAKLKEAQKRGVIIDYFVYNVGDDISLLMTHTKGEDNKDIHGLAWETFKEVTDQIAKRFKLYGAGQDLLKDAFSGNIRGMGPQVAEMEFEERPSEPIIAFAADKTEPGAFNLPLYKMFADPFTTAGLVIDPSMHEGFIFEVLDVVEHKVYLLKTPEDAYSLLGLIGTTGRYIIRKVFRRADGAPAAANSVERLSLIAGRYVGKDDPVLLVRAQSGLPAVGEVLEAFAHPHLVHGWMRGSHAGPLMPARFISVDPERRIAIGPKMTRFDGPPKVGALGFQLHEGYLEGGVDLFDDPAFDYVRQTAAQIADYIRRMGPFQPHRLPPEEMEYTALPKILAKVKPYPADQYEKDRKKYIEAVVKGAKVEESQHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAL4</accession>
    <name>B1YAL4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Alpha-L-glutamate ligase, RimK family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0136</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349514.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAL4"/>
    <dbReference type="STRING" id="444157.Tneu_0136"/>
    <dbReference type="GeneID" id="6165595"/>
    <dbReference type="KEGG" id="tne:Tneu_0136"/>
    <dbReference type="eggNOG" id="arCOG01589">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054353_2_1_2"/>
    <dbReference type="OrthoDB" id="33241at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043774">
        <property type="term" value="F:coenzyme F420-2 alpha-glutamyl ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.470.20:FF:000058">
        <property type="entry name" value="Alpha-aminoadipate--LysW ligase LysX protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013651">
        <property type="entry name" value="ATP-grasp_RimK-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054562">
        <property type="entry name" value="LysX/ArgX_preATP_grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004666">
        <property type="entry name" value="Rp_bS6_RimK/Lys_biosynth_LsyX"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00768">
        <property type="entry name" value="rimK_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21621:SF2">
        <property type="entry name" value="COENZYME GAMMA-F420-2:ALPHA-L-GLUTAMATE LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21621">
        <property type="entry name" value="RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22626">
        <property type="entry name" value="LysX_preATP_grasp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08443">
        <property type="entry name" value="RimK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="PreATP-grasp domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="8">
        <location>
            <begin position="87"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="265" mass="28351" checksum="A2ABE00B87E538D0" modified="2008-05-20" version="1">MVALAYDVVREEEKMLLKAAERAGVQLRLVKVGEAVDIEGWEPDVYLIRTLSHNRGIVFAAAVEGNGGVSVNSSTAIAVSWNKAVSLARLRGAGLPVPKTTVLFGEADVEIKGRSIVKAVSGSWGRKVALVSTREELSLLLKSAEGDVLMLQEMVGTGEDIRVFVVGGRAVAAMRRIPPEGDWRSNAARGGKTLPQRVDGELEELAVKAAEAVGALYAGVDILIGERLYVNEVNGIPEFKALTRTTGVDVASHIIQMLLEVKKRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAL6</accession>
    <name>B1YAL6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0215 protein Tneu_0138</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0138</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0215 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349516.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAL6"/>
    <dbReference type="STRING" id="444157.Tneu_0138"/>
    <dbReference type="GeneID" id="6164618"/>
    <dbReference type="KEGG" id="tne:Tneu_0138"/>
    <dbReference type="eggNOG" id="arCOG00928">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_095956_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2170.10">
        <property type="entry name" value="archaeoglobus fulgidus dsm 4304 superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00582">
        <property type="entry name" value="UPF0215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002802">
        <property type="entry name" value="Endo_dU"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39518">
        <property type="entry name" value="UPF0215 PROTEIN MJ1150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39518:SF2">
        <property type="entry name" value="UPF0215 PROTEIN MJ1150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01949">
        <property type="entry name" value="Endo_dU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006380">
        <property type="entry name" value="UCP006380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="219" mass="24357" checksum="F7EC6E924D38025E" modified="2008-05-20" version="1">MEDAPSWAPLVRPRRGPPAEPQRLLQKNFKVVAVAESFVLQDGYSVYAGVLARRDGVVEEVALDLATLGGTDGTEAASRILEALLRPDVAMVMLDGCVVSFYNWIDGEALWRRFGRPVACYIFEEPEGRAEEAARKLFMDWERRVEAFRRLGQPVPYYTRGGYRIYVRSWGMDPADAGKAAELCTKFGKMPEPIRVAKIIAGGARKFLKNARAKSGDGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAL9</accession>
    <name>B1YAL9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Rossmann fold nucleotide-binding protein-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0141</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349519.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAL9"/>
    <dbReference type="STRING" id="444157.Tneu_0141"/>
    <dbReference type="GeneID" id="6164666"/>
    <dbReference type="KEGG" id="tne:Tneu_0141"/>
    <dbReference type="eggNOG" id="arCOG02431">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_107614_0_1_2"/>
    <dbReference type="OrthoDB" id="9570at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041164">
        <property type="entry name" value="LDcluster4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18306">
        <property type="entry name" value="LDcluster4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102405">
        <property type="entry name" value="MCP/YpsA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="176" mass="19032" checksum="8E6082AB63B44F16" modified="2008-05-20" version="1">MRQIAVAVHSNHVPGLGEKARLFVHALAERYPDAVLLVGGYWGHMKDVVDAALERGLKVVVFLPTEREDVPLPPQVVAVRTGCEFRCRSVMMVRSADAVAVLGGGVGTVIEAFMAYAMGKPLYVLTETGAASDRLPQAYPEYFDERRAVKVEYLRDPKALAEEVCGAEPGASTAFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAR8</accession>
    <name>B1YAR8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0191</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349568.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAR8"/>
    <dbReference type="STRING" id="444157.Tneu_0191"/>
    <dbReference type="GeneID" id="6164765"/>
    <dbReference type="KEGG" id="tne:Tneu_0191"/>
    <dbReference type="eggNOG" id="arCOG05379">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_132454_0_0_2"/>
    <dbReference type="OrthoDB" id="26983at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018632">
        <property type="entry name" value="AAA-associated_dom_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09821">
        <property type="entry name" value="AAA_assoc_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="148" mass="16504" checksum="59AAC41E132A73F5" modified="2008-05-20" version="1">MKFPAVAVDQVLGLLKVVHNLGGRVDAMHVNDAVDADLGDLSHVIDAAEMLGLLRSSGGDLLLTESGKAAVEKPLRELQRYLRDVLQRVEPFTALVRRVAEAKRVSMEEVEELLRKYGYDERGVRRILNWAVFAQLVEIDDGQWVVPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAU9</accession>
    <name>B1YAU9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Cyclic dehypoxanthine futalosine synthase</fullName>
            <shortName evidence="6">Cyclic DHFL synthase</shortName>
            <ecNumber evidence="6">1.21.98.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Dehypoxanthine futalosine cyclase</fullName>
            <shortName evidence="6">DHFL cyclase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Menaquinone biosynthetic enzyme MqnC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">mqnC</name>
        <name evidence="10" type="ordered locus">Tneu_0223</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>dehypoxanthine futalosine + S-adenosyl-L-methionine = cyclic dehypoxanthinylfutalosinate + 5'-deoxyadenosine + L-methionine + H(+)</text>
            <dbReference type="Rhea" id="RHEA:33083"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58864"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64270"/>
            <dbReference type="EC" id="1.21.98.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6 7">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6 7">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Quinol/quinone metabolism; menaquinone biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the radical SAM superfamily. MqnC family.</text>
    </comment>
    <dbReference type="EC" id="1.21.98.1" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAU9"/>
    <dbReference type="STRING" id="444157.Tneu_0223"/>
    <dbReference type="KEGG" id="tne:Tneu_0223"/>
    <dbReference type="eggNOG" id="arCOG00656">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040406_1_0_2"/>
    <dbReference type="UniPathway" id="UPA00079"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044689">
        <property type="term" value="F:7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046992">
        <property type="term" value="F:oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00992">
        <property type="entry name" value="MqnC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045567">
        <property type="entry name" value="CofH/MnqC-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022431">
        <property type="entry name" value="Cyclic_DHFL_synthase_mqnC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034405">
        <property type="entry name" value="F420"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020050">
        <property type="entry name" value="FO_synthase_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00423">
        <property type="entry name" value="CofH family radical SAM protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03699">
        <property type="entry name" value="menaquin_MqnC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43076">
        <property type="entry name" value="FO SYNTHASE (COFH)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43076:SF1">
        <property type="entry name" value="LIPOYL SYNTHASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19288">
        <property type="entry name" value="CofH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004762">
        <property type="entry name" value="CHP00423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00343">
        <property type="entry name" value="aminofutalosine_synthase_(mqnE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00342">
        <property type="entry name" value="cyclic_dehypoxanthine_futalosi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01064">
        <property type="entry name" value="F420__menaquinone_cofactor_bio"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01389">
        <property type="entry name" value="menaquinone_synthsis_involved"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6 7" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4 6 7" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="9">
        <location>
            <begin position="42"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="61"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>(3R)-3-methyl-D-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:64642"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR004762-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR004762-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="364" mass="41768" checksum="85076118F2C4C20B" modified="2008-05-20" version="1">MLILIRRIRQVAVEYKRGDIERLLKEDLWVLGRRAYEIRRRLYGDRTTFISNMVLNYTNVCVIGCSFCAFYRPPGHPEAYGYTPEEAAKRVLAVDARYGIRQVLIQGGINPEIGIEYFEELFRAIKRRVPHVAIHALSPLEVDYLSRRERATYREVLERLREAGMESMPGGGGEILVDRVRRELAPRKIDSATWLRIMEEAHKLGIPTSATMMYGHVETLSDIAEHLYKIAELQEKTRGFMAFIAWNFDPGTSELGKRVRYPKTSASLLRMVAVARIVFRELIPHIQSGWLTTGPETAQLAMYFGADDFGGTLYEEKVLEWKRAEAQIDRREDVVDIIRSAGFTPAERDNMYNVVKVYGQGGQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAW5</accession>
    <name>B1YAW5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ribose-phosphate diphosphokinase</fullName>
            <ecNumber evidence="1">2.7.6.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1747</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15609"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.6.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the ribose-phosphate pyrophosphokinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.6.1" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351084.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAW5"/>
    <dbReference type="STRING" id="444157.Tneu_1747"/>
    <dbReference type="GeneID" id="6165351"/>
    <dbReference type="KEGG" id="tne:Tneu_1747"/>
    <dbReference type="eggNOG" id="arCOG00067">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033546_2_2_2"/>
    <dbReference type="OrthoDB" id="371997at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002189">
        <property type="term" value="C:ribose phosphate diphosphokinase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004749">
        <property type="term" value="F:ribose phosphate diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006015">
        <property type="term" value="P:5-phosphoribose 1-diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029099">
        <property type="entry name" value="Pribosyltran_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRTase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005946">
        <property type="entry name" value="Rib-P_diPkinase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01251">
        <property type="entry name" value="ribP_PPkin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10210">
        <property type="entry name" value="RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10210:SF32">
        <property type="entry name" value="RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13793">
        <property type="entry name" value="Pribosyltran_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01400">
        <property type="entry name" value="Pribosyltran_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="PRTase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="3 8" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Ribose-phosphate pyrophosphokinase N-terminal" evidence="10">
        <location>
            <begin position="22"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="domain" description="Phosphoribosyltransferase" evidence="9">
        <location>
            <begin position="152"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00049535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="285" mass="31481" checksum="77A285DF66E7D30D" modified="2008-05-20" version="1">MDILAFQNAFDIAAEFEGLGEVKQVEERVFPDGEVLVRIPPVGREVALVLRLYPNVNDNFVKLVLALDALSDAGVQRVVLVAPYLPYTRQDRRFRPGEPISSKALLKILGGYPISAVVTLDLHKPYVADYVPRVAVRNLYPATEYAERLSGVDVVVSPDFGSVHRAEAVAKALGVSHTYFEKYRDRETGAIALYPRHDVELRGKKVAIVDDILSTGGTLVDACRSAKTLGAAAVFAAVTHCQLLKDARERVRSCLDKLICTDSILNEFAEVRVGPILRRELERLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAX6</accession>
    <name>B1YAX6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1758</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351095.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAX6"/>
    <dbReference type="STRING" id="444157.Tneu_1758"/>
    <dbReference type="GeneID" id="6165470"/>
    <dbReference type="KEGG" id="tne:Tneu_1758"/>
    <dbReference type="eggNOG" id="arCOG05649">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2766264_0_0_2"/>
    <dbReference type="OrthoDB" id="23717at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="70" mass="8108" checksum="23DE1C794F6D2EAE" modified="2008-05-20" version="1">MIIHTSQIHLIEDVETLLEKYKVKPVAVKGSRVNFYWPPQPTGVPINLLRYFPPDMYVVFRGKNTLIVVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAX9</accession>
    <name>B1YAX9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1761</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351098.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAX9"/>
    <dbReference type="STRING" id="444157.Tneu_1761"/>
    <dbReference type="GeneID" id="6165496"/>
    <dbReference type="KEGG" id="tne:Tneu_1761"/>
    <dbReference type="eggNOG" id="arCOG05646">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2177976_0_0_2"/>
    <dbReference type="OrthoDB" id="26058at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="109" mass="12589" checksum="AD01A343D19238F0" modified="2008-05-20" version="1">MILVTLSELEALLTSLRDYAEKYRTNRLTLEAVEERWLKFQELAFAFGIELKPAEGVEFYAGGPLPDNADLIRRLDRMISIVKKMKEVYGDVKVMVDLDLVIKRTIIKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAY3</accession>
    <name>B1YAY3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAY3"/>
    <dbReference type="STRING" id="444157.Tneu_1765"/>
    <dbReference type="KEGG" id="tne:Tneu_1765"/>
    <dbReference type="eggNOG" id="arCOG05645">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1418737_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="124"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="173"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="218" mass="23421" checksum="83DAD1FCB48A56E1" modified="2008-05-20" version="1">MFIYVPASSYMLQYVYASLAAYVASFALGIAGLHAASAAAGVASVVFSGLALARAYAWLQALRDAFWERISGVWLGGEYVAAIWLYVISGVGVHAVGAVLTDLLRSMAFQPVGFQPVGQDLTRLVGVVALVLGLLALVGVGLVAWAYLIEVFTRDLYLIRAVAGVGAFKPSSATFYIVLSLVTTGFLYYYWLYQVWRWISQMRSSTALPTSSPGPVAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAZ3</accession>
    <name>B1YAZ3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1775</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351112.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAZ3"/>
    <dbReference type="STRING" id="444157.Tneu_1775"/>
    <dbReference type="GeneID" id="6165428"/>
    <dbReference type="KEGG" id="tne:Tneu_1775"/>
    <dbReference type="eggNOG" id="arCOG05643">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1922914_0_0_2"/>
    <dbReference type="OrthoDB" id="27772at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="131" mass="14582" checksum="97CDF9B394DF1577" modified="2008-05-20" version="1">MYAVPPAVILIPLASKEQVLQTVNYVVGRLRQIGAPVRHAHSDSPLYLGCRVAREEVERVDVYLATAGGDFANVLPQAEEIKEGFVERKGYVHLVQGVAICFRYQLGQEPRLAEVVVYTVGAPYRDFKLNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAZ8</accession>
    <name>B1YAZ8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">tRNA-t(6)A37 methylthiotransferase</fullName>
            <ecNumber evidence="11">2.8.4.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Tneu_1780</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 11">Catalyzes the methylthiolation of N6-threonylcarbamoyladenosine (t(6)A), leading to the formation of 2-methylthio-N6-threonylcarbamoyladenosine (ms(2)t(6)A) at position 37 in tRNAs that read codons beginning with adenine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 11">
            <text>N(6)-L-threonylcarbamoyladenosine(37) in tRNA + (sulfur carrier)-SH + AH2 + 2 S-adenosyl-L-methionine = 2-methylsulfanyl-N(6)-L-threonylcarbamoyladenosine(37) in tRNA + (sulfur carrier)-H + 5'-deoxyadenosine + L-methionine + A + S-adenosyl-L-homocysteine + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:37075"/>
            <dbReference type="Rhea" id="RHEA-COMP:10163"/>
            <dbReference type="Rhea" id="RHEA-COMP:11092"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="ChEBI" id="CHEBI:74418"/>
            <dbReference type="ChEBI" id="CHEBI:74420"/>
            <dbReference type="EC" id="2.8.4.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="11">Binds 1 or 2 [4Fe-4S] cluster. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the methylthiotransferase family. CDKAL1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.8.4.5" evidence="11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351117.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAZ8"/>
    <dbReference type="STRING" id="444157.Tneu_1780"/>
    <dbReference type="GeneID" id="6164723"/>
    <dbReference type="KEGG" id="tne:Tneu_1780"/>
    <dbReference type="eggNOG" id="arCOG01358">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018697_4_2_2"/>
    <dbReference type="OrthoDB" id="372134at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035598">
        <property type="term" value="F:tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.80.30.20:FF:000001">
        <property type="entry name" value="tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12160">
        <property type="entry name" value="Methylthiotransferase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="entry name" value="tm_1862 like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005839">
        <property type="entry name" value="Methylthiotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013848">
        <property type="entry name" value="Methylthiotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038135">
        <property type="entry name" value="Methylthiotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006466">
        <property type="entry name" value="MiaB-like_arc_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01578">
        <property type="entry name" value="MiaB-like-B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00089">
        <property type="entry name" value="MiaB/RimO family radical SAM methylthiotransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11918">
        <property type="entry name" value="RADICAL SAM PROTEINS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11918:SF45">
        <property type="entry name" value="THREONYLCARBAMOYLADENOSINE TRNA METHYLTHIOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01938">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00919">
        <property type="entry name" value="UPF0004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01082">
        <property type="entry name" value="B12-binding_domain_containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51449">
        <property type="entry name" value="MTTASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 11" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="8 11" id="KW-0408">Iron</keyword>
    <keyword evidence="9 11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 11" id="KW-0808">Transferase</keyword>
    <keyword evidence="6 11" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="MTTase N-terminal" evidence="13">
        <location>
            <begin position="2"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="14">
        <location>
            <begin position="111"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="domain" description="TRAM" evidence="12">
        <location>
            <begin position="353"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00051661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU368081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB40698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="415" mass="46530" checksum="64727A433CF7CABC" modified="2008-05-20" version="1">MGKIYVETYGCWLAKADAEVVRQRLGLERADSPEEADLVLVYTCAVREDGEVRQLARIRELAGLGRRMVVAGCLARLRPYTVKSAAPGAELLYPSQVEGGREREMRRLPRYEGGVVYVAPLQVGCLGNCTFCATKYTRGGAGYVRSASPDDVVAHVREAVARGAREVYLTGQDVITYGFDAGWRGGWNLPDLLERILREVEGDYRVRIGMSEPWVFAKFADQLLDVVKRDGRVYRYFHLPVQSGSDRVLRAMGRRYTVGEYRELVRKIRRELGDAFIATDIIVGFPGEAEEEFVESVKLVEELKFDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILSEVAARVALLRNGERVGRREVVLVDEVDHGLVVGRASDYRQVVVKRGAGDELMGRFVDVRIAGAGPVYLYGEILE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB09</accession>
    <name>B1YB09_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NADH-quinone oxidoreductase, B subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1791</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the complex I 20 kDa subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351128.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB09"/>
    <dbReference type="STRING" id="444157.Tneu_1791"/>
    <dbReference type="GeneID" id="6165178"/>
    <dbReference type="KEGG" id="tne:Tneu_1791"/>
    <dbReference type="eggNOG" id="arCOG01554">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055737_7_3_2"/>
    <dbReference type="OrthoDB" id="5740at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045271">
        <property type="term" value="C:respiratory chain complex I"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009060">
        <property type="term" value="P:aerobic respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015990">
        <property type="term" value="P:electron transport coupled proton transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006137">
        <property type="entry name" value="NADH_UbQ_OxRdtase-like_20kDa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006138">
        <property type="entry name" value="NADH_UQ_OxRdtase_20Kd_su"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01957">
        <property type="entry name" value="nuoB_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF005012">
        <property type="entry name" value="PRK06411.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11995">
        <property type="entry name" value="NADH DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11995:SF14">
        <property type="entry name" value="NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01058">
        <property type="entry name" value="Oxidored_q6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56770">
        <property type="entry name" value="HydA/Nqo6-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADH:ubiquinone oxidoreductase-like 20kDa subunit" evidence="3">
        <location>
            <begin position="30"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="147" mass="16063" checksum="AA6AAB65955243A5" modified="2008-05-20" version="1">MKGAISQAVSRVARWGTKWSLWPPHLVTACCGVEFAHAFGSAYDAERFGMLPMGSLRQSNILILEGTITLKMAKFVKYIYDQMPEPKYVIAMGACAIKGGVFYGSYHMVPASKVVPVHAYISGCPPTPEAVLKAVEKVQERISHAES</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB49</accession>
    <name>ARLY_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Argininosuccinate lyase</fullName>
            <shortName evidence="1">ASAL</shortName>
            <ecNumber evidence="1">4.3.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Arginosuccinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">argH</name>
        <name type="ordered locus">Tneu_1832</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-(N(omega)-L-arginino)succinate = fumarate + L-arginine</text>
            <dbReference type="Rhea" id="RHEA:24020"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:57472"/>
            <dbReference type="EC" id="4.3.2.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 3/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.1" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351168.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB49"/>
    <dbReference type="SMR" id="B1YB49"/>
    <dbReference type="STRING" id="444157.Tneu_1832"/>
    <dbReference type="GeneID" id="6165243"/>
    <dbReference type="KEGG" id="tne:Tneu_1832"/>
    <dbReference type="eggNOG" id="arCOG01748">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027272_2_0_2"/>
    <dbReference type="OrthoDB" id="27337at2157"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004056">
        <property type="term" value="F:argininosuccinate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:L-arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.40.30">
        <property type="entry name" value="Fumarase/aspartase (C-terminal domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.200.10">
        <property type="entry name" value="Fumarase/aspartase (Central domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="entry name" value="Fumarase/aspartase (N-terminal domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00006">
        <property type="entry name" value="Arg_succ_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009049">
        <property type="entry name" value="Argininosuccinate_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43814">
        <property type="entry name" value="ARGININOSUCCINATE LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43814:SF1">
        <property type="entry name" value="ARGININOSUCCINATE LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00145">
        <property type="entry name" value="ARGSUCLYASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="L-aspartase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0055">Arginine biosynthesis</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000089124" description="Argininosuccinate lyase">
        <location>
            <begin position="1"/>
            <end position="429"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00006"/>
        </source>
    </evidence>
    <sequence length="429" mass="47388" checksum="B4B5E396608AE748" modified="2008-05-20" version="1">MSFYRSWIGGEGELVRRYTSSIRDDAEIVEEVVKIMEAHVRHLAEVGAAPKEAAEAVAKALREVEPERLLTSEFEDVHEALEKWLVDRLGEEVAGWIGLGRSRNDHVAAAIRLAALRKTGVLKKAVERMRCVLAKRALEYADCAMPSFTHFQPAQAITFGHYLLAVDELAGEFLHVLKPVEELLKRSPLGAGPAGGARAPIDRERVAKLAGFEGVVENALYASGSRFFALALASAVVSFLVELSRAVDDFIRWNSPLVGYVAAPDSHVSTSSIMPHKRNLVTLEVFRARAAEALGHLAALHAVVMKIGMGYSLDLQEATRHLWAVLNIASEGVEVFTDFLEKMSFDCGRARRDAERYYSTSSDTAEEAALRGVPFRRAYFQLAREIREGAARLLPVDEALRRPTRGSANPEEVKRAASARLVFCREKPL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="91" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB53</accession>
    <name>LYSZ_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative [LysW]-aminoadipate/[LysW]-glutamate kinase</fullName>
            <ecNumber evidence="1">2.7.2.17</ecNumber>
            <ecNumber evidence="1">2.7.2.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">lysZ</name>
        <name type="ordered locus">Tneu_1836</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in both the arginine and lysine biosynthetic pathways. Phosphorylates the LysW-bound precursors glutamate (for arginine biosynthesis), respectively alpha-aminoadipate (for lysine biosynthesis).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[amino-group carrier protein]-C-terminal-N-(1,4-dicarboxybutan-1-yl)-L-glutamine + ATP = [amino-group carrier protein]-C-terminal-N-(1-carboxy-5-phosphooxy-5-oxopentan-1-yl)-L-glutamine + ADP</text>
            <dbReference type="Rhea" id="RHEA:41944"/>
            <dbReference type="Rhea" id="RHEA-COMP:9694"/>
            <dbReference type="Rhea" id="RHEA-COMP:9712"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:78499"/>
            <dbReference type="ChEBI" id="CHEBI:78503"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.17"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[amino-group carrier protein]-C-terminal-gamma-(L-glutamyl)-L-glutamate + ATP = [amino-group carrier protein]-C-terminal-gamma-(5-phospho-L-glutamyl)-L-glutamate + ADP</text>
            <dbReference type="Rhea" id="RHEA:52632"/>
            <dbReference type="Rhea" id="RHEA-COMP:13311"/>
            <dbReference type="Rhea" id="RHEA-COMP:13313"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:136714"/>
            <dbReference type="ChEBI" id="CHEBI:136717"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.19"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-lysine biosynthesis via AAA pathway; L-lysine from L-alpha-aminoadipate (Thermus route): step 2/5.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-arginine biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the acetylglutamate kinase family. LysZ subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.17" evidence="1"/>
    <dbReference type="EC" id="2.7.2.19" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351172.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB53"/>
    <dbReference type="SMR" id="B1YB53"/>
    <dbReference type="STRING" id="444157.Tneu_1836"/>
    <dbReference type="GeneID" id="6164308"/>
    <dbReference type="KEGG" id="tne:Tneu_1836"/>
    <dbReference type="eggNOG" id="arCOG00862">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053680_2_0_2"/>
    <dbReference type="OrthoDB" id="6816at2157"/>
    <dbReference type="UniPathway" id="UPA00033">
        <property type="reaction ID" value="UER00036"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003991">
        <property type="term" value="F:acetylglutamate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043744">
        <property type="term" value="F:N2-acetyl-L-aminoadipate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:L-arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019878">
        <property type="term" value="P:lysine biosynthetic process via aminoadipic acid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04251">
        <property type="entry name" value="AAK_NAGK-UC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="entry name" value="Acetylglutamate kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02082">
        <property type="entry name" value="LysZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004662">
        <property type="entry name" value="AcgluKinase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037529">
        <property type="entry name" value="LysZ"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00761">
        <property type="entry name" value="argB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF010662">
        <property type="entry name" value="PRK14058.1-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23342">
        <property type="entry name" value="N-ACETYLGLUTAMATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23342:SF0">
        <property type="entry name" value="N-ACETYLGLUTAMATE SYNTHASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000728">
        <property type="entry name" value="NAGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="Carbamate kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0055">Arginine biosynthesis</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0418">Kinase</keyword>
    <keyword id="KW-0457">Lysine biosynthesis</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000092889" description="Putative [LysW]-aminoadipate/[LysW]-glutamate kinase">
        <location>
            <begin position="1"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="35"/>
            <end position="36"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="1">
        <location>
            <position position="5"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="1">
        <location>
            <position position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02082"/>
        </source>
    </evidence>
    <sequence length="260" mass="27585" checksum="F6B26BA3A151D6A0" modified="2008-05-20" version="1">MIVVKIGGSVVCKDPTKVVENLPNYADKAVVVHGGGCLVNDLLKRMGVEPKFLTHPGGLVSRYTDLETLKVFVMAMSWINKSIVASLHALGVEALGLTGADLGVVKARRKEKVLVVDERGRQRVVDGGYVGRVVDIAVDKLRPPPLKVLSPVAVSERGELLNIDGDQLAFDVAKRLGAERLVLLSDVDGLIIGGSVVPRLTAAQAEELVKNEEVRGGMKRKLLMAAEAAKLGLEVVISNGLVDKPIDAALSGRGTHVVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="91" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB56</accession>
    <name>B1YB56_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Threonine synthase</fullName>
            <ecNumber evidence="4 11">4.2.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Tneu_1839</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>O-phospho-L-homoserine + H2O = L-threonine + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10840"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57590"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="EC" id="4.2.3.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 12">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 5/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the threonine synthase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.1" evidence="4 11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351175.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB56"/>
    <dbReference type="STRING" id="444157.Tneu_1839"/>
    <dbReference type="GeneID" id="6164755"/>
    <dbReference type="KEGG" id="tne:Tneu_1839"/>
    <dbReference type="eggNOG" id="arCOG01434">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028142_4_1_2"/>
    <dbReference type="OrthoDB" id="6371at2157"/>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003941">
        <property type="term" value="F:L-serine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004794">
        <property type="term" value="F:threonine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004795">
        <property type="term" value="F:threonine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006565">
        <property type="term" value="P:L-serine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006567">
        <property type="term" value="P:L-threonine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01563">
        <property type="entry name" value="Thr-synth_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1100:FF:000014">
        <property type="entry name" value="Threonine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050147">
        <property type="entry name" value="Ser/Thr_Dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000634">
        <property type="entry name" value="Ser/Thr_deHydtase_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004450">
        <property type="entry name" value="Thr_synthase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="TrpB-like_PALP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="TrpB-like_PALP_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00260">
        <property type="entry name" value="thrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48078:SF6">
        <property type="entry name" value="L-THREONINE DEHYDRATASE CATABOLIC TDCB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48078">
        <property type="entry name" value="THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="Tryptophan synthase beta subunit-like PLP-dependent enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00165">
        <property type="entry name" value="DEHYDRATASE_SER_THR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0456">Lyase</keyword>
    <keyword evidence="8 12" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0791">Threonine biosynthesis</keyword>
    <feature type="domain" description="Tryptophan synthase beta chain-like PALP" evidence="13">
        <location>
            <begin position="89"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="12">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00018679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00049144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="NCBIfam" id="TIGR00260"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR604450-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB40756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="406" mass="43459" checksum="86920B0C46723036" modified="2008-05-20" version="1">MPPHIGPLFKSFHIQKGYKERFFSGHGRFGDNPYLKCISCGATYAQDYRLYRCPKCGGLLDVVVPGKYWAPKGRGLWRYATMLPLRDGVSLGEGQTPLVKSNLDGHLYVKFEGANPTGSFKDRGMALGVTVAKESGASKVVVASTGNTAASAAAYAARAGLKCYVVLPRGNVARGKLMQAALHGAELLMVSGLFDKALEYVVTHGTRYAYPLNSFNPWRLEGQKTLAFEVYEELGCPDYVVVPVGNAGNIAAIWKGFKELGELGLCKKLPKMVGVQAEGAAPLANAWQRGLKEPLFIDEPETVATAIKIGKPINWPKAMAAVRESGGFFIAVSDGEILKAQRLLASRDGIGAEPAGAASVAAALKLKLNGTVVAVVTGHALKDPDAVEINAREVRNAEELVELLEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB63</accession>
    <name>B1YB63_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0241</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB63"/>
    <dbReference type="STRING" id="444157.Tneu_0241"/>
    <dbReference type="KEGG" id="tne:Tneu_0241"/>
    <dbReference type="eggNOG" id="arCOG05492">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_186538_0_0_2"/>
    <dbReference type="OrthoDB" id="27485at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="87" mass="10277" checksum="360D12413EBCCDFA" modified="2008-05-20" version="1">MRDIYVKRGLYLSALIYYLAGKRREKGAVVVVRTREICGTDRRCGWELRRLMLFLVTRGLARRHRRGIYIMERAAVERALHALSEQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="38" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB97</accession>
    <name>B1YB97_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0276</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349649.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB97"/>
    <dbReference type="STRING" id="444157.Tneu_0276"/>
    <dbReference type="GeneID" id="6165636"/>
    <dbReference type="KEGG" id="tne:Tneu_0276"/>
    <dbReference type="eggNOG" id="arCOG04200">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2695981_0_0_2"/>
    <dbReference type="OrthoDB" id="25190at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="72" mass="8280" checksum="297D52247A4358EF" modified="2008-05-20" version="1">MRKPLKFFDIAAGRAFTTAEYRVVEVEIRFPHGVERRPMAVAVSPYTGHLCYSFAPRRSEIKAAPLTTYFKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBA9</accession>
    <name>B1YBA9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0288</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349661.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBA9"/>
    <dbReference type="STRING" id="444157.Tneu_0288"/>
    <dbReference type="GeneID" id="6165829"/>
    <dbReference type="KEGG" id="tne:Tneu_0288"/>
    <dbReference type="eggNOG" id="arCOG06986">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_971879_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="286" mass="30068" checksum="15138FCAD6054580" modified="2008-05-20" version="1">MEVGVVGTRERQLAAMLVGLLILIVVAVVRAGGATPAAAFIIAVGLALFLAYAAYSAVKEGELAQMAERVMSGGFQGEPALIEYFDEWDRKHPRRWLNVIRGGGREGGYLYVFGGGWCYGVFSGYAGRGNQAVAVVDPAAACAPSGSISIQTPDGDYAAASVKPAGPGLAEVSITAHLVKARSAKLELVIETPRGRRPVPLGEAATTYRGRVDFRGVDRPIALVFGGVGGLEKYFKTPAAGLAPYAKYALRLTLDVPLAPDVQTETPVEVQCPKPHTSLRLGTTPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBF4</accession>
    <name>B1YBF4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Iron dependent repressor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0335</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349706.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBF4"/>
    <dbReference type="STRING" id="444157.Tneu_0335"/>
    <dbReference type="GeneID" id="71811211"/>
    <dbReference type="KEGG" id="tne:Tneu_0335"/>
    <dbReference type="eggNOG" id="arCOG02100">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2875235_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022687">
        <property type="entry name" value="HTH_DTXR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01325">
        <property type="entry name" value="Fe_dep_repress"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH dtxR-type" evidence="1">
        <location>
            <begin position="10"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="63" mass="6793" checksum="D040F09BF4F34FD6" modified="2008-05-20" version="1">MRGHGPLRVRREHYLEAIYILGEGASLSRVAGMLGVKPSSALKVVRELEAEGLVVYRGRGACG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBI4</accession>
    <name>B1YBI4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Type II secretion system protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1871</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351205.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBI4"/>
    <dbReference type="STRING" id="444157.Tneu_1871"/>
    <dbReference type="GeneID" id="6166300"/>
    <dbReference type="KEGG" id="tne:Tneu_1871"/>
    <dbReference type="eggNOG" id="arCOG01811">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1100999_0_0_2"/>
    <dbReference type="OrthoDB" id="28828at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056569">
        <property type="entry name" value="ArlJ-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35402">
        <property type="entry name" value="INTEGRAL MEMBRANE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35402:SF1">
        <property type="entry name" value="TYPE II SECRETION SYSTEM PROTEIN GSPF DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="146"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="198"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="226"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="Type II secretion system protein GspF" evidence="7">
        <location>
            <begin position="39"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="248" mass="26216" checksum="A26D3CD875A05C9F" modified="2008-05-20" version="1">MSDFLVFVLVGLVLAGVGFGGWRRAVYVYRLEGQIPQVLRVLSDAVSAGLSLRGAVESAAALALRPMADVLRHVLTLSEMGGLTVEEALWRVAGEIPSPNFRRFALIVTEATRSGAKLPEVLDVSARSFATVVEFRQSVASQLRPYVALYYAIVVVLAVLTDVLIYMLLPQLAQLTAAAPAQGGIKAVVLDRSAVLRALYLSGFAGVLVGGLVVGRVVYNSARAGLLHAGVGAVVLAVGLWAPAWMGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBI8</accession>
    <name>B1YBI8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1875</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351209.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBI8"/>
    <dbReference type="STRING" id="444157.Tneu_1875"/>
    <dbReference type="GeneID" id="6164928"/>
    <dbReference type="KEGG" id="tne:Tneu_1875"/>
    <dbReference type="eggNOG" id="arCOG03870">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_154339_0_0_2"/>
    <dbReference type="OrthoDB" id="28805at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="132" mass="14145" checksum="4AD182253B296786" modified="2008-05-20" version="1">MYGLSEVIASVLLLVISVTFAVLIASVFYNMYFQTQSSLVAEQAREYCEARVVAVTNASGRATIWVYNMGKVRCVFAGAYALDALGNVAAAASTSTSLEPGTLAAINTALPYGYPGYRISTAQGQTFDYWGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBL0</accession>
    <name>B1YBL0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1897</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351231.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBL0"/>
    <dbReference type="GeneID" id="6164877"/>
    <dbReference type="KEGG" id="tne:Tneu_1897"/>
    <dbReference type="eggNOG" id="arCOG05433">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2857250_0_0_2"/>
    <dbReference type="OrthoDB" id="29102at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="67" mass="7088" checksum="71DF86F7B59F08F4" modified="2008-05-20" version="1">MIYVVRGAVLVEEVLLLLVAVALVSAFALTVTGVVQNAVNQILGFKNATSHITDQLVDAVKQLIGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBT3</accession>
    <name>B1YBT3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AAA+ ATPase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0367</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349737.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBT3"/>
    <dbReference type="STRING" id="444157.Tneu_0367"/>
    <dbReference type="GeneID" id="6164858"/>
    <dbReference type="KEGG" id="tne:Tneu_0367"/>
    <dbReference type="eggNOG" id="arCOG03167">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041527_2_0_2"/>
    <dbReference type="OrthoDB" id="27235at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041682">
        <property type="entry name" value="AAA_14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025420">
        <property type="entry name" value="DUF4143"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33295:SF18">
        <property type="entry name" value="AAA+ ATPASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33295">
        <property type="entry name" value="ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13173">
        <property type="entry name" value="AAA_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13635">
        <property type="entry name" value="DUF4143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="1">
        <location>
            <begin position="41"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="441" mass="50195" checksum="614DA1A10FAB5C99" modified="2008-05-20" version="1">MIEEQNPWWISPELIKENAYYRRYLSSPVRWDVELPVSLKPYSLNIVFGPRQVGKSTALILLIKRLLDGGTDPRGVFYFACDKLADYRELDRVLSRYLEFRRRAGVSSSVIVLDEVTYPREWYRAVKYRIDRGDFENDVLILTGSLTISAKGEAETFPGRRGLGKVLVMHPLPFSMFVRLFGVEVPTGDLRFVVDNFHRYLGLLPRLSELFRYFLAVGGFPNAVRDFFTRGAVSQETEFDFVGSISSDIYKLRRSETFFKLTARAIIERASSEFSFHTISRDYGVGTVKTAVSYVGLLEKLHLLKTVEAVDPNTGLPMPRKLRKFYLLDPFIYHSFSKWVGAAPPDEAKMAEAAVAAHLARLYKLYYLKLNGEVDLVAEVDGELWGVEVKYGRVRKGGRRAVGRIKRFIYVSRDEAGDDVIPAPLFLAMLKTPHAVEIGTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="93" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBT7</accession>
    <name>B1YBT7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0371</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349741.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBT7"/>
    <dbReference type="STRING" id="444157.Tneu_0371"/>
    <dbReference type="GeneID" id="6165251"/>
    <dbReference type="KEGG" id="tne:Tneu_0371"/>
    <dbReference type="eggNOG" id="arCOG00198">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_11_2"/>
    <dbReference type="OrthoDB" id="24644at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03214">
        <property type="entry name" value="ABC_Iron-Siderophores_B12_Hemin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000134">
        <property type="entry name" value="Iron-enterobactin ABC transporter ATP-binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050153">
        <property type="entry name" value="Metal_Ion_Import_ABC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42734:SF19">
        <property type="entry name" value="IRON COMPOUNDS ABC TRANSPORTER, ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42734">
        <property type="entry name" value="METAL TRANSPORT SYSTEM ATP-BINDING PROTEIN TM_0124-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="253" mass="27671" checksum="E184B561962FC4AF" modified="2008-05-20" version="1">MLEVKGLEFSYGEFTISGVTFSVGKGEVAVLLGPNGSGKTTILKAIYGLLKPRARCVYVDGADFHSLPFRRRSQLAGYVPQSHHPPFPYRVIDVVVTGFAPRLGLLQSPGREHYEKALEKLRLLGIERLAERPYTHLSGGQLQLVLIARALVQEPQVLLLDEPTAHLDFRNQLRVLSTVRRLAKASGVAVLMTLHDPNLAAAYSDKIIVVKEGRVVAAGAPRDVIKDDVIGEVYGVSVKVLEVDGRVVVLPHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBU0</accession>
    <name>B1YBU0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Magnesium chelatase</fullName>
            <ecNumber evidence="6">6.6.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0375</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Mg-chelatase subunits D/I family.</text>
    </comment>
    <dbReference type="EC" id="6.6.1.1" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349744.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBU0"/>
    <dbReference type="STRING" id="444157.Tneu_0375"/>
    <dbReference type="GeneID" id="6165354"/>
    <dbReference type="KEGG" id="tne:Tneu_0375"/>
    <dbReference type="eggNOG" id="arCOG00438">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016684_5_0_2"/>
    <dbReference type="OrthoDB" id="25914at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016851">
        <property type="term" value="F:magnesium chelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.80">
        <property type="entry name" value="Magnesium chelatase subunit I, C-Terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052989">
        <property type="entry name" value="Mg-chelatase_DI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000523">
        <property type="entry name" value="Mg_chelatse_chII-like_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35023">
        <property type="entry name" value="CHELATASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35023:SF1">
        <property type="entry name" value="MG-PROTOPORPHYRIN IX CHELATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01078">
        <property type="entry name" value="Mg_chelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13519">
        <property type="entry name" value="VWA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="5">
        <location>
            <begin position="471"/>
            <end position="637"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="321"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="4">
        <location>
            <begin position="328"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Gly residues" evidence="4">
        <location>
            <begin position="346"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="371"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="637" mass="69727" checksum="B14611D2F6275E24" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBV9</accession>
    <name>B1YBV9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0395</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349763.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBV9"/>
    <dbReference type="STRING" id="444157.Tneu_0395"/>
    <dbReference type="GeneID" id="6164716"/>
    <dbReference type="KEGG" id="tne:Tneu_0395"/>
    <dbReference type="eggNOG" id="arCOG09836">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2327356_0_0_2"/>
    <dbReference type="OrthoDB" id="372740at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="98" mass="11278" checksum="89C2CA2BC23A9FFE" modified="2008-05-20" version="1">MALRLLAQKGGKIYTYGEKIYIYVEETWLSLNLRLLIWRVGERPPPRAELIAEGEEAKAIATEFAQLLERYTEAKTMKGTAKEALMRSIKEKTLYVLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBX0</accession>
    <name>B1YBX0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">4Fe-4S ferredoxin, iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0406</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349774.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBX0"/>
    <dbReference type="STRING" id="444157.Tneu_0406"/>
    <dbReference type="GeneID" id="6166240"/>
    <dbReference type="KEGG" id="tne:Tneu_0406"/>
    <dbReference type="eggNOG" id="arCOG00333">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023081_6_0_2"/>
    <dbReference type="OrthoDB" id="42878at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="entry name" value="Alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004017">
        <property type="entry name" value="Cys_rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43551">
        <property type="entry name" value="FUMARATE REDUCTASE IRON-SULFUR SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43551:SF1">
        <property type="entry name" value="HETERODISULFIDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02754">
        <property type="entry name" value="CCG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46548">
        <property type="entry name" value="alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="8"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="77"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="431" mass="47961" checksum="718A2C90D91C8364" modified="2008-05-20" version="1">MLAVPKLNSVTLHYFENCVGCAACAPSCPYFYVDERYSPVEKAEFLREMLRARYTLSGRLFGRLVGARMPKSEDEMWKILEFAYRCTNCGHCYVTCPFGIDSGAMVRLLKQTLYSAGVAPTLMKQFAGFEGSGQYLQHPSVKGVWDAFMAEAAKLGAPVDKKGARVLLMVSFMDVVLMRDTVLNTIKILKRVGEDFTIPSRPLGVRPPIGAVVGDPAAQRAAVEDVVKYAESISPQILVTIDGGFVYPNLRFEATNLLRRKFSFKVYHVTELLAEYLREGKLKLKKTGAKVTWHDPCQLGRRAGVFEEPREVLEAFTDYRDLPHNRANSLCCGGGDGINCLTKEMHMAMGKLLGMDIWGMLSAREKEFVEKSEDAYKKAIRRKMDDVRKSGAEVVVTACPVGIETIRLGTQLYGVNAKVVHIVDLVAEALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBZ5</accession>
    <name>B1YBZ5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Adenine DNA glycosylase</fullName>
            <ecNumber evidence="4">3.2.2.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Tneu_0431</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolyzes free adenine bases from 7,8-dihydro-8-oxoguanine:adenine mismatched double-stranded DNA, leaving an apurinic site.</text>
            <dbReference type="EC" id="3.2.2.31"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Nth/MutY family.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.31" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349799.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBZ5"/>
    <dbReference type="STRING" id="444157.Tneu_0431"/>
    <dbReference type="GeneID" id="6166131"/>
    <dbReference type="KEGG" id="tne:Tneu_0431"/>
    <dbReference type="eggNOG" id="arCOG00462">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012862_2_1_2"/>
    <dbReference type="OrthoDB" id="19248at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034039">
        <property type="term" value="F:8-oxo-7,8-dihydroguanine DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035485">
        <property type="term" value="F:adenine/guanine mispair binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032357">
        <property type="term" value="F:oxidized purine DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000701">
        <property type="term" value="F:purine-specific mismatch base pair DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="entry name" value="Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.30">
        <property type="entry name" value="Hypothetical protein, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003651">
        <property type="entry name" value="Endonuclease3_FeS-loop_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004035">
        <property type="entry name" value="Endouclease-III_FeS-bd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000445">
        <property type="entry name" value="HhH_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044298">
        <property type="entry name" value="MIG/MutY"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42944">
        <property type="entry name" value="ADENINE DNA GLYCOSYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42944:SF1">
        <property type="entry name" value="ADENINE DNA GLYCOSYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10576">
        <property type="entry name" value="EndIII_4Fe-2S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00633">
        <property type="entry name" value="HHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001435">
        <property type="entry name" value="Nth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00525">
        <property type="entry name" value="FES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="DNA-glycosylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00764">
        <property type="entry name" value="ENDONUCLEASE_III_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="12" id="KW-0234">DNA repair</keyword>
    <keyword evidence="13" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HhH-GPD" evidence="14">
        <location>
            <begin position="44"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB39379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="225" mass="25205" checksum="C39E4647DD060105" modified="2008-05-20" version="1">MEAGREAWAVAVKAVAEWCVESCDRSLPWRVSGSPWHVLLAAVLLRKTTVAQVLKVWPRLVQRYSSPSALAGADRERLEEDLKPLGLERVRARLLLELAELLCSRYRCEVPCRREDLEGLPGVGPYIASEVLLLGCGVPAPLLDRNAIRVLERALGLKSDRRRPHTDPALWRAAQMLTPVELRLARCFWLGVVDLGRKVCRPKNPRCGACPLKDVCRYRGGNRNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC23</accession>
    <name>B1YC23_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed RNA polymerase subunit Rpo5</fullName>
            <ecNumber evidence="2">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">DNA-directed RNA polymerase subunit H</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rpo5</name>
        <name evidence="2" type="synonym">rpoH</name>
        <name evidence="4" type="ordered locus">Tneu_1962</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Part of the RNA polymerase complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the archaeal Rpo5/eukaryotic RPB5 RNA polymerase subunit family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351296.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC23"/>
    <dbReference type="STRING" id="444157.Tneu_1962"/>
    <dbReference type="GeneID" id="6164381"/>
    <dbReference type="KEGG" id="tne:Tneu_1962"/>
    <dbReference type="eggNOG" id="arCOG04258">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058320_4_0_2"/>
    <dbReference type="OrthoDB" id="30537at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.940.20">
        <property type="entry name" value="RPB5-like RNA polymerase subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00025">
        <property type="entry name" value="RNApol_Rpo5_RPB5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014381">
        <property type="entry name" value="Arch_Rpo5/euc_Rpb5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000783">
        <property type="entry name" value="RNA_pol_subH/Rpb5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035913">
        <property type="entry name" value="RPB5-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF007129">
        <property type="entry name" value="PRK09570.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01191">
        <property type="entry name" value="RNA_pol_Rpb5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55287">
        <property type="entry name" value="RPB5-like RNA polymerase subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="1 2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNA polymerase subunit H/Rpb5 C-terminal" evidence="3">
        <location>
            <begin position="9"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="75" mass="8246" checksum="EEA2CEC95BDF79F9" modified="2008-05-20" version="1">MGGVSLGVKNAVVLSKEEARELLRRLRLRPWQLPWIRSSDPLVQSIGAKPGDVIKIVRESPTAGESVIYRLVVPG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC30</accession>
    <name>RPO3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA-directed RNA polymerase subunit Rpo3</fullName>
            <ecNumber evidence="1">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">DNA-directed RNA polymerase subunit D</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpo3</name>
        <name evidence="1" type="synonym">rpoD</name>
        <name type="ordered locus">Tneu_1969</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the RNA polymerase complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the archaeal Rpo3/eukaryotic RPB3 RNA polymerase subunit family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351303.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC30"/>
    <dbReference type="SMR" id="B1YC30"/>
    <dbReference type="STRING" id="444157.Tneu_1969"/>
    <dbReference type="GeneID" id="6164675"/>
    <dbReference type="KEGG" id="tne:Tneu_1969"/>
    <dbReference type="eggNOG" id="arCOG04241">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038421_3_1_2"/>
    <dbReference type="OrthoDB" id="84933at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07030">
        <property type="entry name" value="RNAP_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.120.12">
        <property type="entry name" value="DNA-directed RNA polymerase, insert domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.10">
        <property type="entry name" value="RNA polymerase, RBP11-like subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00320">
        <property type="entry name" value="RNApol_arch_Rpo3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001514">
        <property type="entry name" value="DNA-dir_RNA_pol_30-40kDasu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011262">
        <property type="entry name" value="DNA-dir_RNA_pol_insert"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011263">
        <property type="entry name" value="DNA-dir_RNA_pol_RpoA/D/Rpb3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036603">
        <property type="entry name" value="RBP11-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022842">
        <property type="entry name" value="RNAP_Rpo3/Rpb3/RPAC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036643">
        <property type="entry name" value="RNApol_insert_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050518">
        <property type="entry name" value="Rpo3/RPB3_RNA_Pol_subunit"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001988">
        <property type="entry name" value="PRK00783.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11800">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11800:SF2">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01000">
        <property type="entry name" value="RNA_pol_A_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01193">
        <property type="entry name" value="RNA_pol_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00662">
        <property type="entry name" value="RPOLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56553">
        <property type="entry name" value="Insert subdomain of RNA polymerase alpha subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55257">
        <property type="entry name" value="RBP11-like subunits of RNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00446">
        <property type="entry name" value="RNA_POL_D_30KD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0804">Transcription</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000115948" description="DNA-directed RNA polymerase subunit Rpo3">
        <location>
            <begin position="1"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00320"/>
        </source>
    </evidence>
    <sequence length="262" mass="29531" checksum="B3F76D0C54E05F1F" modified="2008-05-20" version="1">MPAVKVVERTPLFLKAVVEGAYPSLVNSLRRVIISELPVMAIDTVIVVNNTSVMYDEMLAHRLGLIPLTTPLQSLPPIEDCESGLADPSECTVRFTLQVNADGEVTVYSGDLVSERPDVVPVHKDIPIVKLVKGQSIVLEAYAKLGRARGHAKWQAALASYYYYPRVEVRDESCRERCREVCRDLTNPLECTFNKAMTCRDLCGDKLHVDWERNKYVFWVESFGNYDVDTALREAFRILKRKYSLFLDALARKSSSAAEAKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC35</accession>
    <name>B1YC35_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Like-Sm ribonucleoprotein core</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1974</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the snRNP Sm proteins family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351308.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC35"/>
    <dbReference type="STRING" id="444157.Tneu_1974"/>
    <dbReference type="GeneID" id="6165846"/>
    <dbReference type="KEGG" id="tne:Tneu_1974"/>
    <dbReference type="eggNOG" id="arCOG00998">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076902_11_0_2"/>
    <dbReference type="OrthoDB" id="371816at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01726">
        <property type="entry name" value="LSm6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044641">
        <property type="entry name" value="Lsm7/SmG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047575">
        <property type="entry name" value="Sm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001163">
        <property type="entry name" value="Sm_dom_euk/arc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10553">
        <property type="entry name" value="SMALL NUCLEAR RIBONUCLEOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10553:SF5">
        <property type="entry name" value="U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01423">
        <property type="entry name" value="LSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00651">
        <property type="entry name" value="Sm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="Sm-like ribonucleoproteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52002">
        <property type="entry name" value="SM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0687">Ribonucleoprotein</keyword>
    <feature type="domain" description="Sm" evidence="3">
        <location>
            <begin position="12"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS52002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="86" mass="9193" checksum="4146B24285BEA0F1" modified="2008-05-20" version="1">MSKAPQQLKLPSPIKVLTKMLNKEVVARLKGGVAVRGTLTAYDGCMNLVLDNAAELDKAGEPVARYGRIVIRGSQVIYVSAIEVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC42</accession>
    <name>B1YC42_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1981</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351315.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC42"/>
    <dbReference type="STRING" id="444157.Tneu_1981"/>
    <dbReference type="GeneID" id="6165502"/>
    <dbReference type="KEGG" id="tne:Tneu_1981"/>
    <dbReference type="eggNOG" id="arCOG01989">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_196471_1_0_2"/>
    <dbReference type="OrthoDB" id="35104at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044720">
        <property type="entry name" value="HVO_2753-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011668">
        <property type="entry name" value="HVO_2753-like_ZBP"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF011481">
        <property type="entry name" value="PRK14890.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40733:SF1">
        <property type="entry name" value="SMALL ZINC FINGER PROTEIN HVO-2753-LIKE ZINC-BINDING POCKET DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40733">
        <property type="entry name" value="ZINC-RIBBON RNA-BINDING PROTEIN INVOLVED IN TRANSLATION-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07754">
        <property type="entry name" value="HVO_2753_ZBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Small zinc finger protein HVO-2753-like zinc-binding pocket" evidence="2">
        <location>
            <begin position="16"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="65" mass="6866" checksum="AD64A2576F0098C0" modified="2008-05-20" version="1">MSIRGAKFHGPSPPSDTTTNWVLAPLERGAVFACPNCGKTTIVRSARSRKLGVTYACPECGFVGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC53</accession>
    <name>B1YC53_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Peptidase S8 and S53 subtilisin kexin sedolisin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1992</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the peptidase S8 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351326.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC53"/>
    <dbReference type="STRING" id="444157.Tneu_1992"/>
    <dbReference type="GeneID" id="6165771"/>
    <dbReference type="KEGG" id="tne:Tneu_1992"/>
    <dbReference type="eggNOG" id="arCOG00704">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_265166_0_0_2"/>
    <dbReference type="OrthoDB" id="27270at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016485">
        <property type="term" value="P:protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07497">
        <property type="entry name" value="Peptidases_S8_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="entry name" value="Peptidase S8/S53 domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000209">
        <property type="entry name" value="Peptidase_S8/S53_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023827">
        <property type="entry name" value="Peptidase_S8_Asp-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022398">
        <property type="entry name" value="Peptidase_S8_His-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015500">
        <property type="entry name" value="Peptidase_S8_subtilisin-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034041">
        <property type="entry name" value="STABLE_peptidase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42884:SF14">
        <property type="entry name" value="NEUROENDOCRINE CONVERTASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42884">
        <property type="entry name" value="PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00082">
        <property type="entry name" value="Peptidase_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00723">
        <property type="entry name" value="SUBTILISIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="Subtilisin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51892">
        <property type="entry name" value="SUBTILASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00136">
        <property type="entry name" value="SUBTILASE_ASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00137">
        <property type="entry name" value="SUBTILASE_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 4" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0720">Serine protease</keyword>
    <feature type="domain" description="Peptidase S8/S53" evidence="5">
        <location>
            <begin position="163"/>
            <end position="669"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="1254" mass="134750" checksum="6A0C74175E1DAF80" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC86</accession>
    <name>B1YC86_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0452</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349819.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC86"/>
    <dbReference type="STRING" id="444157.Tneu_0452"/>
    <dbReference type="GeneID" id="6165951"/>
    <dbReference type="KEGG" id="tne:Tneu_0452"/>
    <dbReference type="eggNOG" id="arCOG03655">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_133857_1_0_2"/>
    <dbReference type="OrthoDB" id="28891at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058303">
        <property type="entry name" value="DUF7990"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25952">
        <property type="entry name" value="DUF7990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="84" mass="9923" checksum="BF147C585E7BD2BB" modified="2008-05-20" version="1">MKALRDFLFGLLFLDLYHETAKLNRQLNLLMSILLFGDFLGVPLLTSYYSLRLLPYAYPALSEFRKEAVKEHEIFDLLSEYHVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC97</accession>
    <name>B1YC97_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0463</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349830.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC97"/>
    <dbReference type="STRING" id="444157.Tneu_0463"/>
    <dbReference type="GeneID" id="6166079"/>
    <dbReference type="KEGG" id="tne:Tneu_0463"/>
    <dbReference type="eggNOG" id="arCOG07688">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_753590_0_0_2"/>
    <dbReference type="OrthoDB" id="378638at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="153"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="250"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="314"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="367" mass="39456" checksum="97F19D81F492A2A1" modified="2008-05-20" version="1">MIVLALLGGLAVGGRWGAAYGVLAAYLLYVLYGFSPPLGAAAALAAVAAARGLKLDRLALYALAAAFGKFLLLPYLAGRPIPYYEALWYAAQISPVWRTYAPLTYLPHMPPLELAVEGTLFAVGVAALASRALAEAWGRGAVLWPLLAPEPLVFGHFAMAMPLAWTAAYFAQQRRWGLALLSAALAAGFHIYGGAVALLFVALYGAPWSLLLAPLALLAPQSWVLTSLLWRIPGTDLLSVVEKLAFRAEWFWYIKLALELAVVLSAAVSAGRAGVVPLAGVLGALLTARAPEEYAGFVYRHFAAVLPFARLRPLWAFALLAAVPYLIQVYFFGLDWGWALRYARSFACGCPLEGPVESAYRLIYLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCC6</accession>
    <name>B1YCC6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nucleotidyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0492</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349859.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCC6"/>
    <dbReference type="STRING" id="444157.Tneu_0492"/>
    <dbReference type="GeneID" id="6165696"/>
    <dbReference type="KEGG" id="tne:Tneu_0492"/>
    <dbReference type="eggNOG" id="arCOG00663">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029499_2_2_2"/>
    <dbReference type="OrthoDB" id="15372at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04181">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050486">
        <property type="entry name" value="Mannose-1P_guanyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22572">
        <property type="entry name" value="SUGAR-1-PHOSPHATE GUANYL TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Nucleotidyl transferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="230" mass="25296" checksum="B00B09B4B668A487" modified="2008-05-20" version="1">MRAVILAGGFGRRLAPLTNEVPKPLVPVAGKPILVWQIEWLKRQGVTDIVLAVGYLRHKIFEALGDGRKYGVRLFYSVEEEPLGTGGAIKNAAPYISDDVFIALNGDIITDIDTRPLAAALEKADAAIALVPLRSPYGVVEVDGEGRVMAFREKPVLEHYINAGVYAIRKEALRDLPDRGNIEETLFPKLAQQGRLRAVVYKDAFWRSIDTHKDLEEVEKMLKTGPGGGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCE3</accession>
    <name>B1YCE3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0513</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyltransferase 2 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349876.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCE3"/>
    <dbReference type="STRING" id="444157.Tneu_0513"/>
    <dbReference type="CAZy" id="GT2">
        <property type="family name" value="Glycosyltransferase Family 2"/>
    </dbReference>
    <dbReference type="GeneID" id="6165864"/>
    <dbReference type="KEGG" id="tne:Tneu_0513"/>
    <dbReference type="eggNOG" id="arCOG01383">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023845_4_1_2"/>
    <dbReference type="OrthoDB" id="31358at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43179:SF12">
        <property type="entry name" value="GALACTOFURANOSYLTRANSFERASE GLFT2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43179">
        <property type="entry name" value="RHAMNOSYLTRANSFERASE WBBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="4">
        <location>
            <begin position="11"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="355" mass="40241" checksum="BF863599A10DD8F8" modified="2008-05-20" version="1">MGWPRVSILWLNYNSGRFLDVVLDSLRGVAELDYPDYELVVVDNGSTDGSNRAVREFVERWRGRGGRAKFIQLDRNLGFTGGNNVAFRARDRESKYVVLLNNDAVPEPGSLRTLVEYLERDGRLGACQGVVVKYGDPSVVDTAGDFLDELLRPMALFEGRRGQPLSRPIYITYPDGSYSIYRVEAVRRAVGGERLFDDWAFAYFDDNVLGLRLWNAGYRVISVPVVAGRHRRSATFGWASPFQLYHAFKGKIALLRITNLRRRRLVWAFYAKVLARHTLVPQYARLAWKAYIDGWRLGGRLAKAGAVLDIYKAPVVKLDAGDIYMALFRRASLLRVLGEERLLRLIRGGVLTYVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCE8</accession>
    <name>B1YCE8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Family 577 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0518</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349881.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCE8"/>
    <dbReference type="STRING" id="444157.Tneu_0518"/>
    <dbReference type="GeneID" id="6165834"/>
    <dbReference type="KEGG" id="tne:Tneu_0518"/>
    <dbReference type="eggNOG" id="arCOG03761">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078142_0_0_2"/>
    <dbReference type="OrthoDB" id="373675at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="324" mass="35670" checksum="F799525E7B357C00" modified="2008-05-20" version="1">MAFEEFSRALGGQARLALRWSAWYAAKWWREAREAAGGTWLGRILYLSLRLRGAVDERGDPAPVYKIRGIMGEELLVFEERPEYPTNLYAAEFVDFHSSFDRLNVVNVAQNNVDENTVAMLHSALQISGWYRLVRRAFVKLVGRGGVVLEAFVKEGHTALSLLEEAAPRLYIGFDSRRDHLELASSLLGAEVGGCRGGVCLYPAYSTCDVLDVVKSLAPQGVDAVLLFDAVSWMVDPVRDLSCVGKMLAAGGKIYVAQHVADTAPGLAVISATAGAKHVFNWRGVEQMLKTAGLSLLRRYAKDAPLYTAVWGRGGPLLERLEPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCF8</accession>
    <name>B1YCF8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Asparagine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0528</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349891.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCF8"/>
    <dbReference type="STRING" id="444157.Tneu_0528"/>
    <dbReference type="GeneID" id="6165847"/>
    <dbReference type="KEGG" id="tne:Tneu_0528"/>
    <dbReference type="eggNOG" id="arCOG00071">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050152_0_0_2"/>
    <dbReference type="OrthoDB" id="8692at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004066">
        <property type="term" value="F:asparagine synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006529">
        <property type="term" value="P:asparagine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01991">
        <property type="entry name" value="Asn_synthase_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001962">
        <property type="entry name" value="Asn_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050795">
        <property type="entry name" value="Asn_Synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11772">
        <property type="entry name" value="ASPARAGINE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11772:SF46">
        <property type="entry name" value="ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00733">
        <property type="entry name" value="Asn_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Asparagine synthetase" evidence="3">
        <location>
            <begin position="17"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="285" mass="31369" checksum="4C541FE41DEF8830" modified="2008-05-20" version="1">MIVERLAESVARRPCDAIAFSGGLDSTAVALAHVKLGHRPLLVNVQLAESPGTDAPHAVEAARRLGLPLVVRYVPMWEALAAVEEVVKAIKLFNPMEVVNCSVQYIALKLARDLGAGTVCTGDAGDEICVGYSFMLAKPREELARYMDPSRWYFCSFDLAKALGVEVKAPFLEAAQHLLSIPIEEKTKCGLGKCLLRQELGDLGQRRKDPAEVGSGFRALYKALEELGRRAEVDLHLDGPARYLYHIYRRAGLTYPKARRNPCPRCGAELDDKRYCKMCGYYGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="41" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCI4</accession>
    <name>B1YCI4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0555</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCI4"/>
    <dbReference type="KEGG" id="tne:Tneu_0555"/>
    <dbReference type="eggNOG" id="arCOG07483">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1136093_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="244" mass="27626" checksum="D0CA6C15BE3AC5DA" modified="2008-05-20" version="1">MVTFFILNNDFYMRKVVALSALAVGAVVAVVFILFFNTGGVRGGSLSYEANYTVSGYAVYGKDKIPLSGWMIVGVKGDEGYAVYRFEVEYLFLKFRLTGAEVVKDGIYYKISCMNDECQVEKTRVDELPVHPITRQILKKEVPGFKATVKELGDCEYAGRKGKLYEREVEIEGRYAELLYGEKGPIYENSLMCLADFELYEKTVVKSASGELSEMRVEAYINSSGPYSQERLNTILWEIKSREK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCI8</accession>
    <name>B1YCI8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0559</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCI8"/>
    <dbReference type="KEGG" id="tne:Tneu_0559"/>
    <dbReference type="eggNOG" id="arCOG09844">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1870817_0_0_2"/>
    <dbReference type="OrthoDB" id="384021at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="112"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="136" mass="14993" checksum="DBA809FCA365259C" modified="2008-05-20" version="1">MSPLSLFVLFLSLGYSSPFIASGNLMFAWRICGGRGDLVRGHLLFGVLTLVVNYEFALILMSIGIFLGYSIGYSIPYIMVYLVPLSLALLESAISIASWIYASKCMEKARRYAYIALTIANIPAVLIYYIALSNSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCJ5</accession>
    <name>B1YCJ5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">CRISPR-associated RAMP protein, Cmr1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0566</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349928.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCJ5"/>
    <dbReference type="STRING" id="444157.Tneu_0566"/>
    <dbReference type="GeneID" id="6165798"/>
    <dbReference type="KEGG" id="tne:Tneu_0566"/>
    <dbReference type="eggNOG" id="arCOG03891">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_658254_0_0_2"/>
    <dbReference type="OrthoDB" id="102565at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005537">
        <property type="entry name" value="RAMP_III_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03787">
        <property type="entry name" value="RAMPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRISPR type III-associated protein" evidence="2">
        <location>
            <begin position="8"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="389" mass="42838" checksum="F72B1B678C36F17C" modified="2008-05-20" version="1">MEAAFRVRVSTPLSVGWYDPTLVDPENPLRPASLKGVWRWWARAFVGGVLYERGCLRGEPGRVEVLRPSRREAEAVSRAVGITLGLGYAGSREAASSKFRITTRVVRGPRVERARGGPIYLGGRPVELQRFKLLTLGKPPKTVEYVSDGEFEIKISAEGIPREVFTAAVGILAVALTLGGVGKGSRKGLGSLDVVYASEPRHVKLAELVRDVKRAVERLVRDDCGGKPRGLPPMPVVADAAVEGVKVAQIYAVQKAQFPDLHNFFLRPQRTRVLHGDYRAEDDLRKTLSAWALGLPRSQRGTGYESDVERRASTIMLSYHGSGHIYGDGAFLTALISGDWPRRITWSSEYAEEEVEVDEKKIIEAHAAALAEFQEYVKKIGGEVAKVWP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCP4</accession>
    <name>RS6E_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein eS6</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">30S ribosomal protein S6e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps6e</name>
        <name type="ordered locus">Tneu_0618</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eS6 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349977.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCP4"/>
    <dbReference type="SMR" id="B1YCP4"/>
    <dbReference type="STRING" id="444157.Tneu_0618"/>
    <dbReference type="GeneID" id="6166299"/>
    <dbReference type="KEGG" id="tne:Tneu_0618"/>
    <dbReference type="eggNOG" id="arCOG01946">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_109671_1_1_2"/>
    <dbReference type="OrthoDB" id="7793at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00512">
        <property type="entry name" value="Ribosomal_eS6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001377">
        <property type="entry name" value="Ribosomal_eS6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020924">
        <property type="entry name" value="Ribosomal_eS6_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018282">
        <property type="entry name" value="Ribosomal_eS6_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003293">
        <property type="entry name" value="PRK04290.1-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11502">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01092">
        <property type="entry name" value="Ribosomal_S6e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01405">
        <property type="entry name" value="Ribosomal_S6e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00578">
        <property type="entry name" value="RIBOSOMAL_S6E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000127264" description="Small ribosomal subunit protein eS6">
        <location>
            <begin position="1"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="148" mass="15993" checksum="B3E5B2785664BE90" modified="2008-05-20" version="1">MPTFKLVLSDPMSGKARQFEVKDPLAQRFIGLKIGDELDGQVLKELIELPKGAKVKITGGSGIEGAPMHPGIPGPVKRYVLADSRPGYHPPKRGMKKKKLMRGNTISDTIVQINAVVVYPEGYAGPPAIPLGAKELQKEKKTEEAPAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCR3</accession>
    <name>B1YCR3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">FAD dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0637</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DadA oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349996.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCR3"/>
    <dbReference type="STRING" id="444157.Tneu_0637"/>
    <dbReference type="GeneID" id="6165397"/>
    <dbReference type="KEGG" id="tne:Tneu_0637"/>
    <dbReference type="eggNOG" id="arCOG00755">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_851558_0_0_2"/>
    <dbReference type="OrthoDB" id="168391at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.9.10">
        <property type="entry name" value="D-Amino Acid Oxidase, subunit A, domain 2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13847:SF286">
        <property type="entry name" value="D-AMINO ACID DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13847">
        <property type="entry name" value="SARCOSINE DEHYDROGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD dependent oxidoreductase" evidence="5">
        <location>
            <begin position="138"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="342" mass="37755" checksum="53483DD8ECFB55CC" modified="2008-05-20" version="1">MKAVVVGGGIAGVFTAYFLRQAGFEVVGVGGEVAYPLVSLVLTLSMPNREDVELAGRSLEIYRRFVQPREITSVDILPRWVDLSRLATPHRVADSVEGIRLEEGEMAVITRDYLIPVRKVVKMLREELGFRDSYALLKVEDGRAYVVADGRRLEGDVVVLAAGYRNSILAREAGISLPLAPYECYAVVYIASRKIWRYSVGDYVLGWYGRPLAPPLYAAGDGCGRYGQGPPPNYVQRITNLIRQRVGRVVPLYLKTGYCEVAPHGGPLYGRHPEVQNLYVIGGFNGYGAMVGPALAERLADLIAGQGRDDPYRLERYMGTTSFDPCAVSERHDWGAVLLRNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCU7</accession>
    <name>B1YCU7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional repressor, CopY family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0671</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350030.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCU7"/>
    <dbReference type="STRING" id="444157.Tneu_0671"/>
    <dbReference type="GeneID" id="6165329"/>
    <dbReference type="KEGG" id="tne:Tneu_0671"/>
    <dbReference type="eggNOG" id="arCOG05521">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1292076_0_0_2"/>
    <dbReference type="OrthoDB" id="25770at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002831">
        <property type="entry name" value="Tscrpt_reg_TrmB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01978">
        <property type="entry name" value="TrmB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transcription regulator TrmB N-terminal" evidence="1">
        <location>
            <begin position="10"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="190" mass="22584" checksum="2AAAF6A62E8B4194" modified="2008-05-20" version="1">MDLKEEVLRLLRERGEVTTTEIVNALKQPRHRVLKVLNKLYFEGAVEPVKKNRKYYWRLATGYVAVAPLHLSIEPVLYIEGVIEPIYRRVQDRVDAFIFTHVKNREYWLCDCGVGYSIVTDQPIEGCECKMRHAFGERKLAMLYLPKDLKFRYWRSYRYAEGDVEFIILLPEERDSPELVKKYETYEQTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCX6</accession>
    <name>B1YCX6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA (cytosine-5-)-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0700</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="5">Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.37" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCX6"/>
    <dbReference type="STRING" id="444157.Tneu_0700"/>
    <dbReference type="REBASE" id="17648">
        <property type="entry name" value="M.TneORF700P"/>
    </dbReference>
    <dbReference type="KEGG" id="tne:Tneu_0700"/>
    <dbReference type="eggNOG" id="arCOG04157">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006958_2_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003886">
        <property type="term" value="F:DNA (cytosine-5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044027">
        <property type="term" value="P:negative regulation of gene expression via chromosomal CpG island methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.120.10">
        <property type="entry name" value="DNA Methylase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050390">
        <property type="entry name" value="C5-Methyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001525">
        <property type="entry name" value="C5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00675">
        <property type="entry name" value="dcm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10629">
        <property type="entry name" value="CYTOSINE-SPECIFIC METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10629:SF52">
        <property type="entry name" value="DNA (CYTOSINE-5)-METHYLTRANSFERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00145">
        <property type="entry name" value="DNA_methylase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00105">
        <property type="entry name" value="C5METTRFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51679">
        <property type="entry name" value="SAM_MT_C5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="320" mass="35961" checksum="23050F1465294F83" modified="2008-05-20" version="1">MSVYNAEVVDLFAGGGGFGLGFSQAGFRIKVAIEIDRDAARTYSANHRSTIVLEEDIRNIGYTDVTKFVKNPRVVIGSPPCEPFTAANPNRMEDPADRLYVDPAGQLTLEFIRLVGELGPEVFVMENVAALAEEPLRSYIEREFKRVGYDVYFNVLHAEDYGVPSRRRRVFVSNIEIKPPKLRLRTVREAIGEMPPPDGGLLPNHETPTLSPKKQMRIAKLKPGEALMKYRGAGGFYENYIRLVWDDVAPTVMGSRRFVHPEEHRLLTVREQARLMGYPDWYIFYGSKDAQYNQVGESVPPPLAYAIALEVKKQLTGAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCY1</accession>
    <name>B1YCY1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0705</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350064.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCY1"/>
    <dbReference type="STRING" id="444157.Tneu_0705"/>
    <dbReference type="GeneID" id="6165594"/>
    <dbReference type="KEGG" id="tne:Tneu_0705"/>
    <dbReference type="eggNOG" id="arCOG07480">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_185778_0_0_2"/>
    <dbReference type="OrthoDB" id="26989at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="74" mass="8599" checksum="77CD227B0CCD4378" modified="2008-05-20" version="1">MGLISVETASVCPSCGGPLELVEDGVFLWFGCRRCMRYVKRGKRDFVKRFVDYRSRSFNWSGMMAELYRLYLGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD07</accession>
    <name>B1YD07_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 9 12">Phosphoglycerate kinase</fullName>
            <ecNumber evidence="3 9 12">2.7.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">pgk</name>
        <name evidence="13" type="ordered locus">Tneu_0731</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9 12">
            <text>(2R)-3-phosphoglycerate + ATP = (2R)-3-phospho-glyceroyl phosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:14801"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57604"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 12">Belongs to the phosphoglycerate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.3" evidence="3 9 12"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350090.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD07"/>
    <dbReference type="STRING" id="444157.Tneu_0731"/>
    <dbReference type="GeneID" id="6165463"/>
    <dbReference type="KEGG" id="tne:Tneu_0731"/>
    <dbReference type="eggNOG" id="arCOG00496">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025427_0_2_2"/>
    <dbReference type="OrthoDB" id="6575at2157"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043531">
        <property type="term" value="F:ADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004618">
        <property type="term" value="F:phosphoglycerate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1260:FF:000006">
        <property type="entry name" value="Phosphoglycerate kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1260">
        <property type="entry name" value="Phosphoglycerate kinase, N-terminal domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00145">
        <property type="entry name" value="Phosphoglyc_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001576">
        <property type="entry name" value="Phosphoglycerate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015824">
        <property type="entry name" value="Phosphoglycerate_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036043">
        <property type="entry name" value="Phosphoglycerate_kinase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11406">
        <property type="entry name" value="PHOSPHOGLYCERATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11406:SF23">
        <property type="entry name" value="PHOSPHOGLYCERATE KINASE 1, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00162">
        <property type="entry name" value="PGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000724">
        <property type="entry name" value="Pgk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00477">
        <property type="entry name" value="PHGLYCKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53748">
        <property type="entry name" value="Phosphoglycerate kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="7 9 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="6 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9 12" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="9 10">
        <location>
            <begin position="28"/>
            <end position="30"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>(2R)-3-phosphoglycerate</name>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <begin position="66"/>
            <end position="69"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>(2R)-3-phosphoglycerate</name>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>(2R)-3-phosphoglycerate</name>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 11">
        <location>
            <position position="334"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="358"/>
            <end position="361"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000724-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000724-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB39670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="408" mass="44823" checksum="9483AEDEFD10BBB8" modified="2008-05-20" version="1">MLLNDVIDQLPNINKCLRKGKTLFIRVDINSPIVNGKIVDDFRIRAHATTLKLASEAGAKAVVLAHQGRPGQDDFTSLEIHKPYIEKYLERPIKFVDDVAGPEARRQIKELREGEILLLENVRLLSEEVIEKVPEAQAETYLVRKLAPLGDYFVFDGFAVAHRSQPSVVGFPMVLPSCMGPVFERELRALSVVFERRGKGVLLIAGGAKISDTLKAVEQLLKSNTAEHVAVGGLVGFVFSVAKYGFVNSALRQEVEKGGYMPYVDKARALLDKYGKQIYTPIDFAVNQNGRMDVDIYSLPQVPLDIGRSTVIQFKELIENSEIVIFSGPMGYIEDERFAAGTIELMRAASKKRLILGGGHTILGAEKAGVLDKAFHVSTGGRAFIQTIGGEEMPAVKALLTSAKKFGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD40</accession>
    <name>B1YD40_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0764</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350123.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD40"/>
    <dbReference type="STRING" id="444157.Tneu_0764"/>
    <dbReference type="GeneID" id="6164332"/>
    <dbReference type="KEGG" id="tne:Tneu_0764"/>
    <dbReference type="eggNOG" id="arCOG01365">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2366329_0_0_2"/>
    <dbReference type="OrthoDB" id="27991at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="95" mass="10575" checksum="9BFDD624C69D2C78" modified="2008-05-20" version="1">MVKYRYLLVRSGDPVSCYLQLLERYQLVGFTALIHKPRLVAIYDDVLVVGVPREALRAVRAIVALLYGCRTVKTAGTERRAKAVAASIRRRGSGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD42</accession>
    <name>B1YD42_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Exosome subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0766</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350125.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD42"/>
    <dbReference type="STRING" id="444157.Tneu_0766"/>
    <dbReference type="GeneID" id="6164496"/>
    <dbReference type="KEGG" id="tne:Tneu_0766"/>
    <dbReference type="eggNOG" id="arCOG01042">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_131306_1_1_2"/>
    <dbReference type="OrthoDB" id="10874at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002739">
        <property type="entry name" value="PAB1135-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022803">
        <property type="entry name" value="Ribosomal_uL5_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38816:SF1">
        <property type="entry name" value="EXOSOME SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38816">
        <property type="entry name" value="EXOSOME SUBUNIT, DUF54 FAMILY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01877">
        <property type="entry name" value="RNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55282">
        <property type="entry name" value="RL5-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="118" mass="13100" checksum="3C199C851648B121" modified="2008-05-20" version="1">MRCRYVEISVIVHATESLEKVFNALRRFFGELPLVVEIYEGHHGNPIYLVTSYLEDCDALLEKLCSAFGGAVPASRGEAEGLYYLRLDKQALAAGAVKAVEHDDVVRLKIRTKDGLCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD80</accession>
    <name>B1YD80_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0804</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350163.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD80"/>
    <dbReference type="STRING" id="444157.Tneu_0804"/>
    <dbReference type="GeneID" id="6164640"/>
    <dbReference type="KEGG" id="tne:Tneu_0804"/>
    <dbReference type="eggNOG" id="arCOG07038">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2044498_0_0_2"/>
    <dbReference type="OrthoDB" id="29223at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="120" mass="13345" checksum="6BDE2A68F4E9BA1A" modified="2008-05-20" version="1">MNFAETMLISAAGGAIAALAPLVYIMYYGRPTTFTVWTGAVVSFIGGFIFTLLAAQWPLFYARFTYLLALALLLTSIAYTYWGMYRRRWFAYLFAAAAWIYIILLALVAKALGLGDPFIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDA4</accession>
    <name>B1YDA4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutamate synthase alpha subunit domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0830</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350187.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDA4"/>
    <dbReference type="STRING" id="444157.Tneu_0830"/>
    <dbReference type="GeneID" id="6164522"/>
    <dbReference type="KEGG" id="tne:Tneu_0830"/>
    <dbReference type="eggNOG" id="arCOG00095">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_424917_0_0_2"/>
    <dbReference type="OrthoDB" id="2513at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.60">
        <property type="entry name" value="Glutamate synthase, alpha subunit, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="entry name" value="Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002489">
        <property type="entry name" value="Glu_synth_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036485">
        <property type="entry name" value="Glu_synth_asu_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012075">
        <property type="entry name" value="Glu_synth_lsu_1/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39673">
        <property type="entry name" value="TUNGSTEN FORMYLMETHANOFURAN DEHYDROGENASE, SUBUNIT C (FWDC)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39673:SF5">
        <property type="entry name" value="TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE 2 SUBUNIT C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01493">
        <property type="entry name" value="GXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036632">
        <property type="entry name" value="GOGAT_lg_1_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69336">
        <property type="entry name" value="Alpha subunit of glutamate synthase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="1">
        <location>
            <begin position="2"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="568" mass="61582" checksum="6C2F79F35A43A4A6" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDA5</accession>
    <name>LEUD_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">3-isopropylmalate dehydratase small subunit</fullName>
            <ecNumber evidence="1">4.2.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Alpha-IPM isomerase</fullName>
            <shortName evidence="1">IPMI</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Isopropylmalate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">leuD</name>
        <name type="ordered locus">Tneu_0831</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2R,3S)-3-isopropylmalate = (2S)-2-isopropylmalate</text>
            <dbReference type="Rhea" id="RHEA:32287"/>
            <dbReference type="ChEBI" id="CHEBI:1178"/>
            <dbReference type="ChEBI" id="CHEBI:35121"/>
            <dbReference type="EC" id="4.2.1.33"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 2/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterodimer of LeuC and LeuD.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the LeuD family. LeuD type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.33" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350188.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDA5"/>
    <dbReference type="SMR" id="B1YDA5"/>
    <dbReference type="STRING" id="444157.Tneu_0831"/>
    <dbReference type="GeneID" id="6164656"/>
    <dbReference type="KEGG" id="tne:Tneu_0831"/>
    <dbReference type="eggNOG" id="arCOG02230">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081378_1_1_2"/>
    <dbReference type="OrthoDB" id="6505at2157"/>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003861">
        <property type="term" value="F:3-isopropylmalate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:L-leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01577">
        <property type="entry name" value="IPMI_Swivel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.19.10">
        <property type="entry name" value="Aconitase, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01032">
        <property type="entry name" value="LeuD_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015928">
        <property type="entry name" value="Aconitase/3IPM_dehydase_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000573">
        <property type="entry name" value="AconitaseA/IPMdHydase_ssu_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033940">
        <property type="entry name" value="IPMI_Swivel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050075">
        <property type="entry name" value="LeuD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011827">
        <property type="entry name" value="LeuD_type2/HacB/DmdB"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02087">
        <property type="entry name" value="LEUD_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43345:SF2">
        <property type="entry name" value="3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43345">
        <property type="entry name" value="3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00694">
        <property type="entry name" value="Aconitase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52016">
        <property type="entry name" value="LeuD/IlvD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword id="KW-0432">Leucine biosynthesis</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000135851" description="3-isopropylmalate dehydratase small subunit">
        <location>
            <begin position="1"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01032"/>
        </source>
    </evidence>
    <sequence length="162" mass="17267" checksum="7EFCE302B9DDE0E6" modified="2008-05-20" version="1">MKVRGKAIVYGDKIDTDVIIPAKYLVYTDPAVLGQHAMEPLDPEFPKKAKGAVLVAGRAFGMGSSREQAAIALKGAGVLAVVAESFARIFFRNAINVGLPVLQVPDVTKRVREGDELEVDIEGGYLLNLTTGERLEGKPLRGLPLAILKAGGLVNFLKTAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDB7</accession>
    <name>B1YDB7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">molybdopterin molybdotransferase</fullName>
            <ecNumber evidence="4">2.10.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0843</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>adenylyl-molybdopterin + molybdate = Mo-molybdopterin + AMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:35047"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
            <dbReference type="ChEBI" id="CHEBI:62727"/>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.10.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the MoeA family.</text>
    </comment>
    <dbReference type="EC" id="2.10.1.1" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350200.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDB7"/>
    <dbReference type="STRING" id="444157.Tneu_0843"/>
    <dbReference type="GeneID" id="6164375"/>
    <dbReference type="KEGG" id="tne:Tneu_0843"/>
    <dbReference type="eggNOG" id="arCOG00217">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010186_3_0_2"/>
    <dbReference type="OrthoDB" id="31371at2157"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061599">
        <property type="term" value="F:molybdopterin molybdotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00887">
        <property type="entry name" value="MoeA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.190.10:FF:000566">
        <property type="entry name" value="Molybdenum cofactor biosynthesis protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.170.190.11:FF:000001">
        <property type="entry name" value="Molybdopterin molybdenumtransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.980.10:FF:000004">
        <property type="entry name" value="Molybdopterin molybdenumtransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.340.10:FF:000005">
        <property type="entry name" value="Molybdopterin molybdenumtransferase MoeA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="entry name" value="MoaB/Mog-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.340.10">
        <property type="entry name" value="MoeA, C-terminal, domain IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.105.10">
        <property type="entry name" value="Molybdopterin biosynthesis moea protein, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.190.11">
        <property type="entry name" value="Molybdopterin biosynthesis moea protein, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038987">
        <property type="entry name" value="MoeA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005111">
        <property type="entry name" value="MoeA_C_domain_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036688">
        <property type="entry name" value="MoeA_C_domain_IV_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005110">
        <property type="entry name" value="MoeA_linker/N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036135">
        <property type="entry name" value="MoeA_linker/N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF045515">
        <property type="entry name" value="Glp_gephyrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00177">
        <property type="entry name" value="molyb_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF011068">
        <property type="entry name" value="PRK14498.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10192:SF5">
        <property type="entry name" value="GEPHYRIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10192">
        <property type="entry name" value="MOLYBDOPTERIN BIOSYNTHESIS PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03454">
        <property type="entry name" value="MoeA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03453">
        <property type="entry name" value="MoeA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12727">
        <property type="entry name" value="PBP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63867">
        <property type="entry name" value="MoeA C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63882">
        <property type="entry name" value="MoeA N-terminal region -like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="Molybdenum cofactor biosynthesis proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="9" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MoaB/Mog" evidence="11">
        <location>
            <begin position="186"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013269"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="637" mass="67918" checksum="DB8775C67DB1558B" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDD7</accession>
    <name>B1YDD7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0863</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350220.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDD7"/>
    <dbReference type="STRING" id="444157.Tneu_0863"/>
    <dbReference type="GeneID" id="6164427"/>
    <dbReference type="KEGG" id="tne:Tneu_0863"/>
    <dbReference type="eggNOG" id="arCOG07066">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_175267_0_0_2"/>
    <dbReference type="OrthoDB" id="29182at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="74" mass="7930" checksum="F67D6C37F05FF1A8" modified="2008-05-20" version="1">MRKALSLVAASYAVLLLLFATGAASLPILRIRLAGGFTVGDVVIILAVLLYGMFIYIYGQVLIRGSCRGGRRND</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDE0</accession>
    <name>PGP_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphoglycolate phosphatase</fullName>
            <shortName evidence="1">PGP</shortName>
            <shortName evidence="1">PGPase</shortName>
            <ecNumber evidence="1">3.1.3.18</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_0866</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the dephosphorylation of 2-phosphoglycolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-phosphoglycolate + H2O = glycolate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14369"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29805"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58033"/>
            <dbReference type="EC" id="3.1.3.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the archaeal SPP-like hydrolase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.18" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350223.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDE0"/>
    <dbReference type="SMR" id="B1YDE0"/>
    <dbReference type="STRING" id="444157.Tneu_0866"/>
    <dbReference type="GeneID" id="6164311"/>
    <dbReference type="KEGG" id="tne:Tneu_0866"/>
    <dbReference type="eggNOG" id="arCOG01213">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044146_2_0_2"/>
    <dbReference type="OrthoDB" id="120822at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008967">
        <property type="term" value="F:phosphoglycolate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1070.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01419">
        <property type="entry name" value="GPH_hydrolase_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006382">
        <property type="entry name" value="PGPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01487">
        <property type="entry name" value="Pglycolate_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10000:SF8">
        <property type="entry name" value="HAD SUPERFAMILY HYDROLASE-LIKE, TYPE 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10000">
        <property type="entry name" value="PHOSPHOSERINE PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08282">
        <property type="entry name" value="Hydrolase_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000145630" description="Phosphoglycolate phosphatase">
        <location>
            <begin position="1"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="9"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01419"/>
        </source>
    </evidence>
    <sequence length="228" mass="23743" checksum="80DE9ADD1859A964" modified="2008-05-20" version="1">MGCKVLVVDLDGTLTLSRNTYELSVEALLALRRARDAGIRVVLATANGLDFALTVARYLGVRDVIAENGCLVHIDGETHELCSGDMSEVDRAVLATGAVAPSHQNKCRRFDLAYVPLVENAVERVKAAVRPGYVVDSSGYAIHVRPAGADKGAAVRWLCERLGVSCGWVAAVGDSDVDAGMLATAWGIAVGNATEAAKRAARAVVRGPSGLGFKEAVDLILSGGACAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDE4</accession>
    <name>B1YDE4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Beta-lactamase domain protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0870</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDE4"/>
    <dbReference type="STRING" id="444157.Tneu_0870"/>
    <dbReference type="KEGG" id="tne:Tneu_0870"/>
    <dbReference type="eggNOG" id="arCOG00498">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1145256_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd06262">
        <property type="entry name" value="metallo-hydrolase-like_MBL-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="245" mass="26849" checksum="38FBE2CB1B36AC58" modified="2008-05-20" version="1">MKMVFSRSGVGWIYEGFFGVDVAEDAGVDVVLVTHHHPRHVAGARRAKMVVMNPIEYSMASDPARAARYARVVMRRAGAPSVENPEVQAGPFRGAVYRFTAGWVDLGDISVRVIPCGSHTWGHTCFGVEKAVFVGDLDSWIVSVDTFIRVVASLRGLRGYTAYTGGGERKPLEEFLEELERSFKRLLGRYLECVGEKTPYGIALCARGGGDPLRLSEEGLAFVKYLAENGHVKIVNTAPYVVKPA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-09-02" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDH4</accession>
    <name>SYA_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Alanine--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Alanyl-tRNA synthetase</fullName>
            <shortName evidence="1">AlaRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">alaS</name>
        <name type="ordered locus">Tneu_0900</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>tRNA(Ala) + L-alanine + ATP = L-alanyl-tRNA(Ala) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:12540"/>
            <dbReference type="Rhea" id="RHEA-COMP:9657"/>
            <dbReference type="Rhea" id="RHEA-COMP:9923"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78497"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">Consists of three domains; the N-terminal catalytic domain, the editing domain and the C-terminal C-Ala domain. The editing domain removes incorrectly charged amino acids, while the C-Ala domain, along with tRNA(Ala), serves as a bridge to cooperatively bring together the editing and aminoacylation centers thus stimulating deacylation of misacylated tRNAs.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.7" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350257.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDH4"/>
    <dbReference type="SMR" id="B1YDH4"/>
    <dbReference type="STRING" id="444157.Tneu_0900"/>
    <dbReference type="GeneID" id="6164315"/>
    <dbReference type="KEGG" id="tne:Tneu_0900"/>
    <dbReference type="eggNOG" id="arCOG01255">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004485_4_0_2"/>
    <dbReference type="OrthoDB" id="7506at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004813">
        <property type="term" value="F:alanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006419">
        <property type="term" value="P:alanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00673">
        <property type="entry name" value="AlaRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.130:FF:000010">
        <property type="entry name" value="Alanine--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.54.20:FF:000005">
        <property type="entry name" value="Alanine--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.930.10:FF:000056">
        <property type="entry name" value="Alanine--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.980.10:FF:000004">
        <property type="entry name" value="Alanine--tRNA ligase, cytoplasmic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.980.10">
        <property type="entry name" value="Threonyl-trna Synthetase, Chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00036_A">
        <property type="entry name" value="Ala_tRNA_synth_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002318">
        <property type="entry name" value="Ala-tRNA-lgiase_IIc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018162">
        <property type="entry name" value="Ala-tRNA-ligase_IIc_anticod-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018165">
        <property type="entry name" value="Ala-tRNA-synth_IIc_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018164">
        <property type="entry name" value="Ala-tRNA-synth_IIc_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022429">
        <property type="entry name" value="Ala-tRNA_lgiase_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050058">
        <property type="entry name" value="Ala-tRNA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018163">
        <property type="entry name" value="Thr/Ala-tRNA-synth_IIc_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012947">
        <property type="entry name" value="tRNA_SAD"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03683">
        <property type="entry name" value="A-tRNA_syn_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00344">
        <property type="entry name" value="alaS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11777:SF9">
        <property type="entry name" value="ALANINE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11777">
        <property type="entry name" value="ALANYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01411">
        <property type="entry name" value="tRNA-synt_2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07973">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00980">
        <property type="entry name" value="TRNASYNTHALA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00863">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101353">
        <property type="entry name" value="Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55186">
        <property type="entry name" value="ThrRS/AlaRS common domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50860">
        <property type="entry name" value="AA_TRNA_LIGASE_II_ALA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0820">tRNA-binding</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_0000347893" description="Alanine--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="892"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="594"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="598"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="702"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="706"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00036"/>
        </source>
    </evidence>
    <sequence length="892" mass="99923" checksum="18FE54A67E3CC487" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDI5</accession>
    <name>B1YDI5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0911</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350268.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDI5"/>
    <dbReference type="STRING" id="444157.Tneu_0911"/>
    <dbReference type="GeneID" id="6164288"/>
    <dbReference type="KEGG" id="tne:Tneu_0911"/>
    <dbReference type="eggNOG" id="arCOG04321">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048704_0_0_2"/>
    <dbReference type="OrthoDB" id="21376at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007841">
        <property type="entry name" value="UPF0210"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003700">
        <property type="entry name" value="PRK05313.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37560:SF1">
        <property type="entry name" value="UPF0210 PROTEIN MJ1665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37560">
        <property type="entry name" value="UPF0210 PROTEIN SPR0218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05167">
        <property type="entry name" value="DUF711"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51998">
        <property type="entry name" value="PFL-like glycyl radical enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="448" mass="46190" checksum="7CD4877A6D8A80B6" modified="2008-05-20" version="1">MRFDPSEIGEVLEMLLFRELDIRAVTLSVNTLPAIRPTVGDTLAALEEALEPLLKRLRPAVERVASRLGVRIVTVRLAVSPVSIMLEPIGKAEAAVEIAKHLDGLAEKHGVDMVGGFSAFVHAGVSRGDAALMEALSEALNSTRRLAGFLNVASTATGVNMDAVRAAAEAVLKMEPHAAARFAATANMPEDVPFMPGAYHGLGLPDAVVNIAVSGPGVIEAVVRNMPNADVRTLHDAIKRAAFKITRLGELVGREVAKELGVPFGSVDLSVAPSPKVGDSVAAILEAVGLPRVGAPGTLFALALFVDAVKKGGAMATSTIGGLSGAFIPVSEDAVMAEAAREGALTFDTLKSTLAVCNTGIDMAGIPGDAPPDAVAALIADVMAAAVALDKALGVRLVPIPGAKPGDVYDLGGLYGRVVVMDLGKYGDIPLARRRGTAPPAVERLKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDI9</accession>
    <name>B1YDI9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Electron transfer flavoprotein alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0915</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ETF alpha-subunit/FixB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350272.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDI9"/>
    <dbReference type="STRING" id="444157.Tneu_0915"/>
    <dbReference type="GeneID" id="6164639"/>
    <dbReference type="KEGG" id="tne:Tneu_0915"/>
    <dbReference type="eggNOG" id="arCOG00447">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034178_0_1_2"/>
    <dbReference type="OrthoDB" id="307696at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033539">
        <property type="term" value="P:fatty acid beta-oxidation using acyl-CoA dehydrogenase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1220:FF:000004">
        <property type="entry name" value="Electron transfer flavoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1220">
        <property type="entry name" value="TPP-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014730">
        <property type="entry name" value="ETF_a/b_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001308">
        <property type="entry name" value="ETF_a/FixB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014731">
        <property type="entry name" value="ETF_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43153">
        <property type="entry name" value="ELECTRON TRANSFER FLAVOPROTEIN ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43153:SF11">
        <property type="entry name" value="ELECTRON TRANSFER FLAVOPROTEIN, SUBUNIT ALPHA (ETFA)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01012">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00766">
        <property type="entry name" value="ETF_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000089">
        <property type="entry name" value="Electra_flavoP_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00893">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="DHS-like NAD/FAD-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Electron transfer flavoprotein alpha/beta-subunit N-terminal" evidence="4">
        <location>
            <begin position="3"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="296" mass="31294" checksum="AE071137AAEA75C7" modified="2008-05-20" version="1">MRSLVVFPSRELLYAASLLSGEVAALAFSQAEAEAAVGRAHRVYIAEVDPAAPEAVAEAVLKAVEGRDVVLLPATKNARAVGGIVAQRIGAEFITDVTSLSVEGGVVKAERPAFGNKAVATIEAGTPVVLSISPGRFAGEAPQVQSAVEKLAVQAAPAVKVVSVQEKPRGSLRLEEAEVIVAVGRGFKRREDLQLAFQLAEALGGKVGCSRPIAADLKWLPEEHWVGLSGKKVKPKLYIAVGISGQPQHIAGMINSRVVVAINTDPSAPIFQYADYGVVEDLYKILPLLVERLKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDJ2</accession>
    <name>B1YDJ2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Small GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0918</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDJ2"/>
    <dbReference type="STRING" id="444157.Tneu_0918"/>
    <dbReference type="KEGG" id="tne:Tneu_0918"/>
    <dbReference type="eggNOG" id="arCOG00352">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011784_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01897">
        <property type="entry name" value="NOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031167">
        <property type="entry name" value="G_OBG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041623">
        <property type="entry name" value="NOG1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010674">
        <property type="entry name" value="NOG1_Rossman_fold_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45759">
        <property type="entry name" value="NUCLEOLAR GTP-BINDING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06858">
        <property type="entry name" value="NOG1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17835">
        <property type="entry name" value="NOG1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51710">
        <property type="entry name" value="G_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OBG-type G" evidence="3">
        <location>
            <begin position="175"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="351" mass="38749" checksum="C686F011B537C27C" modified="2008-05-20" version="1">MWAAPSVEVVDKSKLPYVYTADELISMFLAAYEREEARGSVAEPAFVKQKRLEIKRIVSSGRAVASVLRRTALAMPFLDRLHPFYRDLMDVVFGAQSYKHAVAKVGNAHLAVRAIAKEAIAAVRTAPDKGAIHAARRMYRGRVVDLLNDLRPELDKLREVVAFLRRLPAVDPNLFTIVVAGAPNVGKSSFVRCVSSARPEVADYPFTTKQIHVGHIRIRGDVVQVVDTPGLLDRPLSERNAIERQAVLALRHLAGAIVFLVDPTPHSGFPLEMQLNLYREISASFQAPLVAVVNKVDIASPAELERARDLFSPIGEVSTLDCRGTGEVVNYVLAKFYVPAALERLRAARRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDK1</accession>
    <name>B1YDK1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0927</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350284.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDK1"/>
    <dbReference type="STRING" id="444157.Tneu_0927"/>
    <dbReference type="GeneID" id="6164369"/>
    <dbReference type="KEGG" id="tne:Tneu_0927"/>
    <dbReference type="eggNOG" id="arCOG07483">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091234_0_0_2"/>
    <dbReference type="OrthoDB" id="29167at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="266" mass="26924" checksum="5D51D53A5ABA56C1" modified="2008-05-20" version="1">MGKVAYLVLAVLIVGAALYFLYTAQSAARSLAPGGGGPAAEAGVSTTAAAGASATTPRLPFGGGNYEVNYTVSVTVSIGGVSVSMRGWSVEGAGPLGNYSFGVFYVSVPPRGPLRVEYKAATEGRTAYVVTCAGGQCQGEMKPANSSSLYLLRGEVASARSLGPCSALGYTGVEVEESGRLTQGQVAQLLGDLGGNGTGTYTVRRCEVNGVALKSVGTAYLNVTVYGQRLTVAVSVESAAVSAGPFDGERYRRVLAEAKAAAPAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDM6</accession>
    <name>B1YDM6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase</fullName>
            <ecNumber evidence="4">4.1.1.68</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0954</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FAH family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.68" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350309.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDM6"/>
    <dbReference type="STRING" id="444157.Tneu_0954"/>
    <dbReference type="GeneID" id="6164433"/>
    <dbReference type="KEGG" id="tne:Tneu_0954"/>
    <dbReference type="eggNOG" id="arCOG00235">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028458_3_1_2"/>
    <dbReference type="OrthoDB" id="6242at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018800">
        <property type="term" value="F:5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019752">
        <property type="term" value="P:carboxylic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.850.10:FF:000002">
        <property type="entry name" value="2-hydroxyhepta-2,4-diene-1,7-dioate isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="entry name" value="Fumarylacetoacetase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051121">
        <property type="entry name" value="FAH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42796:SF4">
        <property type="entry name" value="FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42796">
        <property type="entry name" value="FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="FAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fumarylacetoacetase-like C-terminal" evidence="3">
        <location>
            <begin position="87"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="300" mass="33883" checksum="E73A361BBC6E4A64" modified="2008-05-20" version="1">MRLLTFRRGEVRKVGLLRGGRVLDLPEAYKATFGTEEAPDFLYDMRRLIALGDPALDVVRRLEREAKGPLYQPAEVRWEPPVPNPEKILCVAVNYRAHGAETGLEPPDKPYFFPKFPNALVGHEGYVLKHRVVQKLDWEVELVVVMGRPGKYVDPERALDHVFGYTVGLDMSMRDWQNPDEKTARQYGKNWIWGKTMDTAAPVGPHIVTKDEVPDPNKLALRLWVNGQLEQEGNTSHLIFNVQQLIHWASQGITLRPGDLIFTGTPPGVGWAKGRYLKGGDVVEAEVESIGLLRVYIAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDQ0</accession>
    <name>B1YDQ0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Periplasmic binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0978</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350333.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDQ0"/>
    <dbReference type="STRING" id="444157.Tneu_0978"/>
    <dbReference type="GeneID" id="6164587"/>
    <dbReference type="KEGG" id="tne:Tneu_0978"/>
    <dbReference type="eggNOG" id="arCOG03303">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="eggNOG" id="arCOG05704">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_399372_0_0_2"/>
    <dbReference type="OrthoDB" id="28686at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd01147">
        <property type="entry name" value="HemV-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1980">
        <property type="entry name" value="Nitrogenase molybdenum iron protein domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050902">
        <property type="entry name" value="ABC_Transporter_SBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30535:SF34">
        <property type="entry name" value="MOLYBDATE-BINDING PROTEIN MOLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30535">
        <property type="entry name" value="VITAMIN B12-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53807">
        <property type="entry name" value="Helical backbone' metal receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="2">
        <location>
            <begin position="368"/>
            <end position="645"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="1">
        <location>
            <begin position="30"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="689" mass="74865" checksum="835E9D47478869B5" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDR0</accession>
    <name>B1YDR0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0990</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350343.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDR0"/>
    <dbReference type="GeneID" id="6164465"/>
    <dbReference type="KEGG" id="tne:Tneu_0990"/>
    <dbReference type="eggNOG" id="arCOG03725">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2257475_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="47"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="103" mass="11581" checksum="AE7DD9D1F4F17D1F" modified="2008-05-20" version="1">MAENLIAAVLGKAAEEALETAVQAYLQKKISRKDFQTALLLVIVKMMGDMNKKLDIANKRLDDVNRKLDDIKMDVAAIKENMARAREELLRVRENIASVGIRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDR3</accession>
    <name>B1YDR3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">CRISPR-associated autoregulator, DevR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0994</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350346.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDR3"/>
    <dbReference type="STRING" id="444157.Tneu_0994"/>
    <dbReference type="GeneID" id="6165678"/>
    <dbReference type="KEGG" id="tne:Tneu_0994"/>
    <dbReference type="eggNOG" id="arCOG03617">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054331_0_0_2"/>
    <dbReference type="OrthoDB" id="97643at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010154">
        <property type="entry name" value="CRISPR-assoc_Cas7/Cst2/DevR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052681">
        <property type="entry name" value="CRISPR-Cas7/Cst2/DevR"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01875">
        <property type="entry name" value="cas_MJ0381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37459">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37459:SF1">
        <property type="entry name" value="CRISPR-ASSOCIATED PROTEIN CAS7_CST2_DEVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01905">
        <property type="entry name" value="DevR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00025626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="310" mass="34380" checksum="8F33B978A77AFAF1" modified="2008-05-20" version="1">MFVSFAFRFRAEVEALNMVETMGNYARHRTVPVLIREDGGYRITAAPGVSGQSVSYGYMAALVKLAAGRSLPVCEECASYEKIGGFFKRADRVDIGHDERVKTCVVEDITGFMATKEAGGGEKGSVVKRTSAVMFSYMLPDTSSARGVVMPQFHVRYNLQKPDTQRPFTVESGTAVYIQAVAIDVMKIGRLEDGDDVDDWLERAELAFDALKLLYSGMLFGAKKARYLPAFEALGGVAAVADPHPFMVSPPRYGDYWALNKARVEKMKPLYSTLELSCFDREGITSCDSGLSTLEELIDWAKERVLEYFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDS3</accession>
    <name>B1YDS3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1004</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350356.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDS3"/>
    <dbReference type="STRING" id="444157.Tneu_1004"/>
    <dbReference type="GeneID" id="6164921"/>
    <dbReference type="KEGG" id="tne:Tneu_1004"/>
    <dbReference type="eggNOG" id="arCOG05420">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2802428_0_0_2"/>
    <dbReference type="OrthoDB" id="25745at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="67" mass="7159" checksum="72F30D621CEC15C7" modified="2008-05-20" version="1">MLRVERQGPVARLVYSAGGREAVAVGPMSDLPTLLGLFVAQMAREGFTAEDICSALRKALEELGRPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDT5</accession>
    <name>B1YDT5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase</fullName>
            <ecNumber evidence="9">4.1.3.44</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">tRNA wyosine derivatives biosynthesis protein Taw1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">taw1</name>
        <name evidence="11" type="ordered locus">Tneu_1016</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Component of the wyosine derivatives biosynthesis pathway that catalyzes the condensation of N-methylguanine with 2 carbon atoms from pyruvate to form the tricyclic 4-demethylwyosine (imG-14) on guanosine-37 of tRNA(Phe).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 9">
            <text>N(1)-methylguanosine(37) in tRNA(Phe) + pyruvate + S-adenosyl-L-methionine = 4-demethylwyosine(37) in tRNA(Phe) + 5'-deoxyadenosine + L-methionine + CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:36347"/>
            <dbReference type="Rhea" id="RHEA-COMP:10164"/>
            <dbReference type="Rhea" id="RHEA-COMP:10165"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64315"/>
            <dbReference type="ChEBI" id="CHEBI:73542"/>
            <dbReference type="EC" id="4.1.3.44"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="9">Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the TYW1 family.</text>
    </comment>
    <dbReference type="EC" id="4.1.3.44" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350368.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDT5"/>
    <dbReference type="STRING" id="444157.Tneu_1016"/>
    <dbReference type="GeneID" id="6165032"/>
    <dbReference type="KEGG" id="tne:Tneu_1016"/>
    <dbReference type="eggNOG" id="arCOG04174">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007952_3_0_2"/>
    <dbReference type="OrthoDB" id="68499at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102521">
        <property type="term" value="F:tRNA-4-demethylwyosine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01921">
        <property type="entry name" value="TYW1_archaea"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013917">
        <property type="entry name" value="tRNA_wybutosine-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034556">
        <property type="entry name" value="tRNA_wybutosine-synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023993">
        <property type="entry name" value="TYW1_archaea"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03972">
        <property type="entry name" value="rSAM_TYW1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13930">
        <property type="entry name" value="S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13930:SF0">
        <property type="entry name" value="S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE TYW1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08608">
        <property type="entry name" value="Wyosine_form"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00284">
        <property type="entry name" value="tRNA_wybutosine-synthesizing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01071">
        <property type="entry name" value="tRNA_wybutosine-synthesizing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0408">Iron</keyword>
    <keyword evidence="6 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 9" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 9" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="Radical SAM core" evidence="10">
        <location>
            <begin position="67"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="351" mass="41046" checksum="F26F83E6866DAC78" modified="2008-05-20" version="1">MSCEAEALGRYHLLEGPRIKIRASAARALIERHYGVAGHATVELCKWTKEALETGRSCYKVKFYNAPAGGSHRCVEMSPVGLVCSNRCVYCWRPTEEFDAFQLEEAFYMEPEEIVRGVLEERRRLLSGYWGHPQGRRRVREALEPTHWAISLSGEPTMYPKLPQLIKLVKSLPSTKSVFLVTNGQHPEMLRRLVEEDALPTQLYLSTNAPNRELYYLINVPVYRREDAWERWLESLDILAKVPTRTVLRITLIRSLNYDGRYIPEFAQIVKRGNPHFVEVKSYMHLGHSTQRLRREDMLSHQEVREWAFKLLAELEKIGARFRYMDEDEASRIVVIQNMDRYVDRWIVPPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDU5</accession>
    <name>B1YDU5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase small</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1027</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350378.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDU5"/>
    <dbReference type="STRING" id="444157.Tneu_1027"/>
    <dbReference type="GeneID" id="6164995"/>
    <dbReference type="KEGG" id="tne:Tneu_1027"/>
    <dbReference type="eggNOG" id="arCOG00910">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074702_1_0_2"/>
    <dbReference type="OrthoDB" id="31271at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051720">
        <property type="entry name" value="rRNA_MeTrfase/Polyamine_Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23290">
        <property type="entry name" value="RRNA N6-ADENOSINE-METHYLTRANSFERASE METTL5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23290:SF0">
        <property type="entry name" value="RRNA N6-ADENOSINE-METHYLTRANSFERASE METTL5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase" evidence="1">
        <location>
            <begin position="52"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="202" mass="22287" checksum="65403E715C8FA529" modified="2008-05-20" version="1">MPPRSKKELEIFVESIPAFEKPKLRLEQYPTDAAVVAAAVWDAHMRGLLDDVLDLGCGTGRFALAAAAMGARRVLCLDVDPEALAAAKKAAESRGLESVDFLAAAAPALPLARRFKTAFQNPPFGIWSGRGTDIAFLHAAAEHAEVVYTIHKLPTLDYVREAAARLGRRLEVLERAVLNIKPTYRHHRKRIHKVEVFLALVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDV6</accession>
    <name>B1YDV6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Superoxide dismutase</fullName>
            <ecNumber evidence="2 7">1.15.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1038</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Destroys radicals which are normally produced within the cells and which are toxic to biological systems.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>2 superoxide + 2 H(+) = H2O2 + O2</text>
            <dbReference type="Rhea" id="RHEA:20696"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:18421"/>
            <dbReference type="EC" id="1.15.1.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the iron/manganese superoxide dismutase family.</text>
    </comment>
    <dbReference type="EC" id="1.15.1.1" evidence="2 7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350389.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDV6"/>
    <dbReference type="SMR" id="B1YDV6"/>
    <dbReference type="STRING" id="444157.Tneu_1038"/>
    <dbReference type="GeneID" id="6164866"/>
    <dbReference type="KEGG" id="tne:Tneu_1038"/>
    <dbReference type="eggNOG" id="arCOG04147">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031625_2_2_2"/>
    <dbReference type="OrthoDB" id="32917at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004784">
        <property type="term" value="F:superoxide dismutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.990:FF:000001">
        <property type="entry name" value="Superoxide dismutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.55.40.20:FF:000004">
        <property type="entry name" value="Superoxide dismutase [Fe]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.990">
        <property type="entry name" value="Fe,Mn superoxide dismutase (SOD) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.55.40.20">
        <property type="entry name" value="Iron/manganese superoxide dismutase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050265">
        <property type="entry name" value="Fe/Mn_Superoxide_Dismutase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001189">
        <property type="entry name" value="Mn/Fe_SOD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019833">
        <property type="entry name" value="Mn/Fe_SOD_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019832">
        <property type="entry name" value="Mn/Fe_SOD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019831">
        <property type="entry name" value="Mn/Fe_SOD_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036324">
        <property type="entry name" value="Mn/Fe_SOD_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036314">
        <property type="entry name" value="SOD_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11404">
        <property type="entry name" value="SUPEROXIDE DISMUTASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11404:SF6">
        <property type="entry name" value="SUPEROXIDE DISMUTASE [MN], MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02777">
        <property type="entry name" value="Sod_Fe_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00081">
        <property type="entry name" value="Sod_Fe_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000349">
        <property type="entry name" value="SODismutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01703">
        <property type="entry name" value="MNSODISMTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54719">
        <property type="entry name" value="Fe,Mn superoxide dismutase (SOD), C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46609">
        <property type="entry name" value="Fe,Mn superoxide dismutase (SOD), N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00088">
        <property type="entry name" value="SOD_MN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="3 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Manganese/iron superoxide dismutase N-terminal" evidence="8">
        <location>
            <begin position="6"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="Manganese/iron superoxide dismutase C-terminal" evidence="9">
        <location>
            <begin position="97"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000349-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="211" mass="24165" checksum="702C9B786BA8525B" modified="2008-05-20" version="1">MASVKKYTLPNLPYAYNALEPYIAEEIMRLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIRAVLRDLSFHLNGHILHSIFWPNMAPPGKGGGKPGGKTADLINKFFGSFEKFKEEFSLAAKNVEGVGWAILVYEPDQEQLLVLQVEKHNLMHAADAQVLLALDVWEHAYYLQYKNDRGSYVDNWWNVVNWDDVERRLQKALNGQIALKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="40" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDW1</accession>
    <name>B1YDW1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1043</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350394.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDW1"/>
    <dbReference type="STRING" id="444157.Tneu_1043"/>
    <dbReference type="GeneID" id="6164964"/>
    <dbReference type="KEGG" id="tne:Tneu_1043"/>
    <dbReference type="eggNOG" id="arCOG12498">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_587458_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="465" mass="50790" checksum="908EFAE1E8EA9306" modified="2008-05-20" version="1">MPVRYDYQFGTFGPQCTFNTVYKVANPTGPQLFVLKPGDTATVRDLPCSNCRSEYTYQWNTYPFWASCTYSGWTGDVQLLGSVVYHWVYLVAVLNGTQLDVRINNVRIYSGQLADTTVKAPQGFDVAIASKPAAVKFGDKAIALKQGVTTWSGWVRFDGLPAPTAPADIDLTLYVMPAGPKAKDSAFGVVTPFVIYSVAAYRNGTGAAVYWYNDAGLQKTYMQSPGQIYIQGVGTVTVTWNNASISIRIGNGPTYTGGSYASAPYLYKVDTTGAYVYKLRAKVNTWARFRLVSYTVDGWYNTIPTAVEIIIYSRGDLYLHLGDKLVSYDAIYGEAHYFAQWSKSNTPGLIYGAPGEKIDICVPSYIPINSTGSVTRVEPGDLPGTQKASVEVVKAVRVVGCGQDTTTYTTYYVTSTLVKEGKLAVYDPFRKINCDYQTSYVSPKGCVLCEKCSPNNLACSTVCGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDY5</accession>
    <name>B1YDY5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1067</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350417.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDY5"/>
    <dbReference type="STRING" id="444157.Tneu_1067"/>
    <dbReference type="GeneID" id="6164363"/>
    <dbReference type="KEGG" id="tne:Tneu_1067"/>
    <dbReference type="eggNOG" id="arCOG02187">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1113913_0_0_2"/>
    <dbReference type="OrthoDB" id="15347at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050572">
        <property type="entry name" value="Fe-S_Ferredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43687">
        <property type="entry name" value="ADENYLYLSULFATE REDUCTASE, BETA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43687:SF1">
        <property type="entry name" value="FERREDOXIN III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13187">
        <property type="entry name" value="Fer4_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="37"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="180"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="211"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="284" mass="30724" checksum="05B30FA634DBDA6B" modified="2008-05-20" version="1">MKIYADFGRCVRGFWTGASCRKCVDVCPAGALYVEGRFVKAEPSLCVGCGVCMSACPTGVFTAQLGPYISCREGGVCINGLRAEDYLRLVEKYGEVTVDARCDDCSLRGRGLEELEKAVKAGLKIRVIRGRGGDVGRRMLLRRGLAKLAGGDLLEVKRGPPRRISYDREKAVELGLVSPRRPAIDVEKCTACFLCAGVCPIQAIEVDEDEVMLKVDGYKCAECGLCAEACPEGAIKLVEGGEPVETYLFEVEQCPNCGTVYPKKRGVCPVCGVGRELIREVYGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDZ4</accession>
    <name>B1YDZ4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1076</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350426.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDZ4"/>
    <dbReference type="STRING" id="444157.Tneu_1076"/>
    <dbReference type="GeneID" id="6166133"/>
    <dbReference type="KEGG" id="tne:Tneu_1076"/>
    <dbReference type="eggNOG" id="arCOG02682">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_46_6_2"/>
    <dbReference type="OrthoDB" id="117970at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd17316">
        <property type="entry name" value="MFS_SV2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23511">
        <property type="entry name" value="SYNAPTIC VESICLE GLYCOPROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23511:SF34">
        <property type="entry name" value="SYNAPTIC VESICLE GLYCOPROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00217">
        <property type="entry name" value="SUGAR_TRANSPORT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="17"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="55"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="107"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="169"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="211"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="245"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="273"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="298"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="331"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="357"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily (MFS) profile" evidence="7">
        <location>
            <begin position="17"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="382" mass="40930" checksum="C53D5A90629BB770" modified="2008-05-20" version="1">MLKWGGVARPVVPELRLIAVAGVGWLFDAMDVLLLSYILVASAAELGLGVWEKSAVVLANNLGMLIGATAFGRLSDRLGRRAVFTATLLLYSLATSATALVKNGWELAAVRLIAGLGLGGELPVVASYVSELSPPERRGRNVVVLESFWSLGALAAAAVAYFLFPRLGWRTSLLLLGLTALYAAVIRAALPEHKPAPRGAAPVEARRLYPVWYIWLALAFGYYGVFLWLPTILVRERGLAEVQTYQFMLITTVAQIPGYLTAAYLVERIGRRPTAAVFFLGSAASAAALIYSADLPQLYASAIALNFFNLGAWGVVYAYTPELFPEHVRGLAVGTAGSAARVGMILGPWLYPAAGLYALAAVPLLWLAVPAAVYALPETKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE23</accession>
    <name>B1YE23_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF2250 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350455.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE23"/>
    <dbReference type="STRING" id="444157.Tneu_1105"/>
    <dbReference type="GeneID" id="6165568"/>
    <dbReference type="KEGG" id="tne:Tneu_1105"/>
    <dbReference type="eggNOG" id="arCOG03698">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2379539_0_0_2"/>
    <dbReference type="OrthoDB" id="45652at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019254">
        <property type="entry name" value="DUF2250"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10007">
        <property type="entry name" value="DUF2250"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="94" mass="10993" checksum="5FEFC56DCA3D6866" modified="2008-05-20" version="1">MDQEELAVLRHLKRANVDYGKSIAVNTGIPLQKVLDILEKLEALGLVERVRGGKTLKRTEARYKLSHEVRKHHVYYRLTRKGRHLLRQERGQNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE32</accession>
    <name>B1YE32_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PD-(D/E)XK endonuclease-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1114</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350464.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE32"/>
    <dbReference type="STRING" id="444157.Tneu_1114"/>
    <dbReference type="GeneID" id="6165760"/>
    <dbReference type="KEGG" id="tne:Tneu_1114"/>
    <dbReference type="eggNOG" id="arCOG00786">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_525447_0_0_2"/>
    <dbReference type="OrthoDB" id="382755at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038726">
        <property type="entry name" value="PDDEXK_AddAB-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12705">
        <property type="entry name" value="PDDEXK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PD-(D/E)XK endonuclease-like" evidence="2">
        <location>
            <begin position="38"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="518" mass="59672" checksum="E8B5592ED9BDAEEB" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="40" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE33</accession>
    <name>B1YE33_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ATPase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1115</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350465.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE33"/>
    <dbReference type="STRING" id="444157.Tneu_1115"/>
    <dbReference type="GeneID" id="6165677"/>
    <dbReference type="KEGG" id="tne:Tneu_1115"/>
    <dbReference type="HOGENOM" id="CLU_634043_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="432" mass="48746" checksum="CC5B76A23A116F20" modified="2008-05-20" version="1">MEICRSVLRLGEGEHILETREGMAAYVSPGVNLVFVTGYYGYGKTYGVGYYVICQALARGEPFLYVNVRDLGHVISKLAVDVEAGGAQGLEDLLLILAQVARGDLLKRLADDRVVITNVDLENIASAVIANAGDPVRHFVREFAKVSARKSAYLILDEVESGIRDVKSFIERVCTTVRNEIYDAGYRNIKLILLLQEAVLVAHGAEPRCSTIRGAEGITRAIKLRGYGSDVYLKYIKDRIGEGGADERELKKIAELVSEFPPRVAFDVLRQYITYGELTYTAFKDFLSAIFKDTKESFLLELPKSGTEYFMVVGEVVNDLRNNKIEASFEEVKSKVYRLWVSCEREKKKEVYMDLRAYTKEERESDADVSIFTNGEDLMIATKSSSPRPVMKFRHFLMAYYPGESHIQGLGEMYNQFRLVFREALRRAACKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE52</accession>
    <name>B1YE52_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CRISPR-associated protein Cas5 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1135</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the CRISPR-associated protein Cas5 family. Subtype I-A/Apern subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350484.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE52"/>
    <dbReference type="STRING" id="444157.Tneu_1135"/>
    <dbReference type="GeneID" id="6165772"/>
    <dbReference type="KEGG" id="tne:Tneu_1135"/>
    <dbReference type="eggNOG" id="arCOG02672">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1212637_0_0_2"/>
    <dbReference type="OrthoDB" id="27308at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021124">
        <property type="entry name" value="CRISPR-assoc_prot_Cas5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013422">
        <property type="entry name" value="CRISPR-assoc_prot_Cas5_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010153">
        <property type="entry name" value="CRISPR-assoc_prot_Cas5a-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053725">
        <property type="entry name" value="CRISPR_Cas5_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01874">
        <property type="entry name" value="cas_cas5a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02593">
        <property type="entry name" value="CRISPR_cas5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09704">
        <property type="entry name" value="Cas_Cas5d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00025626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="226" mass="24573" checksum="FC75C9FB525A8F27" modified="2008-05-20" version="1">MHYYLIEARAPLYSVKVVDVYQVASAYPLPTPHAVVGALGAAMAHAGMCRGSRCMKEAEGLVVAARPAAVGELAKFPAVLWRTRGVLEDKSLPAGLEDYAGARDAMVREYVYAHAVKILLVTRERVPQHVIRLVARLGDSESYVSVVDVLEGKPRECGGLVNVAVRAAKARRGSYTLYRALDERGNRELFAYPLVEEGGVYRRGGVEVGSKVLCLGEAVFPEGDDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE58</accession>
    <name>B1YE58_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">CRISPR-associated endoribonuclease Cas2</fullName>
            <ecNumber evidence="8">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">cas2</name>
        <name evidence="9" type="ordered locus">Tneu_1141</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer, forms a heterotetramer with a Cas1 homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the CRISPR-associated endoribonuclease Cas2 protein family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350490.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE58"/>
    <dbReference type="STRING" id="444157.Tneu_1141"/>
    <dbReference type="GeneID" id="6165831"/>
    <dbReference type="KEGG" id="tne:Tneu_1141"/>
    <dbReference type="eggNOG" id="arCOG04194">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_161124_2_3_2"/>
    <dbReference type="OrthoDB" id="75992at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:RNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01471">
        <property type="entry name" value="Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021127">
        <property type="entry name" value="CRISPR_associated_Cas2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019199">
        <property type="entry name" value="Virulence_VapD/CRISPR_Cas2"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01573">
        <property type="entry name" value="cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34405">
        <property type="entry name" value="CRISPR-ASSOCIATED ENDORIBONUCLEASE CAS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34405:SF3">
        <property type="entry name" value="CRISPR-ASSOCIATED ENDORIBONUCLEASE CAS2 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09827">
        <property type="entry name" value="CRISPR_Cas2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143430">
        <property type="entry name" value="TTP0101/SSO1404-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="4 8" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 8" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="8">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="90" mass="9900" checksum="143D89D7581F001C" modified="2008-05-20" version="1">MYIIVVYDITENDVRAKVADILRAYGLARIQRSAYVGRLPPALVKELAERLARAVKGANADIAIFKVDKRAIETALRIPPRPPAGHAALH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8K6</accession>
    <name>B1Y8K6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Antitoxin SocA-like Panacea domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1156</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350504.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8K6"/>
    <dbReference type="STRING" id="444157.Tneu_1156"/>
    <dbReference type="GeneID" id="6166092"/>
    <dbReference type="KEGG" id="tne:Tneu_1156"/>
    <dbReference type="eggNOG" id="arCOG07011">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1122611_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025272">
        <property type="entry name" value="SocA_Panacea"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13274">
        <property type="entry name" value="SocA_Panacea"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Antitoxin SocA-like Panacea" evidence="1">
        <location>
            <begin position="26"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="250" mass="28100" checksum="86AECB9FCBB9E171" modified="2008-05-20" version="1">MSDVSLRDLVLYVVSRFPKGVGRTRLMKMLFLVDMYAGEGLGRSLTGVDWFRWKFGPFSREVLDVLDELEKEGLVAVDLGPERRYIALAEPEALPDDVRRVVDRVVAEYGFKPLRELLAEVYERFKINERELGERIAAGDGKLERLVRLAEAAGGDEGAYVELMGRLYEEYEDVLDAVPPDMLSLYGLAVLALQRSGKGGEVEKVTRELVEVLDEVGKVLRSEPNKPLPRPIRERVSRLYSELLDAATGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8L9</accession>
    <name>B1Y8L9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Type-5 uracil-DNA glycosylase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1169</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="8">Belongs to the uracil-DNA glycosylase (UDG) superfamily. Type 5 (UDGb) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350517.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8L9"/>
    <dbReference type="STRING" id="444157.Tneu_1169"/>
    <dbReference type="GeneID" id="6165109"/>
    <dbReference type="KEGG" id="tne:Tneu_1169"/>
    <dbReference type="eggNOG" id="arCOG00905">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083279_0_0_2"/>
    <dbReference type="OrthoDB" id="8612at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033958">
        <property type="term" value="F:DNA-deoxyinosine glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004844">
        <property type="term" value="F:uracil DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10031">
        <property type="entry name" value="UDG-F5_TTUDGB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.470.10">
        <property type="entry name" value="Uracil-DNA glycosylase-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051536">
        <property type="entry name" value="UDG_Type-4/5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044147">
        <property type="entry name" value="UdgB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005122">
        <property type="entry name" value="Uracil-DNA_glycosylase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036895">
        <property type="entry name" value="Uracil-DNA_glycosylase-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33693">
        <property type="entry name" value="TYPE-5 URACIL-DNA GLYCOSYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33693:SF3">
        <property type="entry name" value="TYPE-5 URACIL-DNA GLYCOSYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03167">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00986">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00987">
        <property type="entry name" value="UreE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52141">
        <property type="entry name" value="Uracil-DNA glycosylase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Uracil-DNA glycosylase-like" evidence="10">
        <location>
            <begin position="33"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="206" mass="22644" checksum="8E347DE792E67E17" modified="2008-05-20" version="1">MDFGDFLRRLTACRACSRLVEYRSSFPPGYWAKPVPPWGSGPIMVVGLAPAARGGNRTGRMFTGDRSSQNLFRALYEAGLASRPYSISRDDGVELHGVYITSAVKCAPPGNKPTAEEVKNCSRWLREEVEIVKPRVVVALGRVAWRALSEILGVREEFRHGAVVEKNGVYLVGAYHPSPRNINTGRTTVEELAEVFKLAKRLAGVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8N1</accession>
    <name>B1Y8N1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Citrate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1181</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CitM (TC 2.A.11) transporter family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350529.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8N1"/>
    <dbReference type="STRING" id="444157.Tneu_1181"/>
    <dbReference type="GeneID" id="6164847"/>
    <dbReference type="KEGG" id="tne:Tneu_1181"/>
    <dbReference type="eggNOG" id="arCOG00238">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011920_3_0_2"/>
    <dbReference type="OrthoDB" id="86089at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015105">
        <property type="term" value="F:arsenite transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000802">
        <property type="entry name" value="Arsenical_pump_ArsB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004680">
        <property type="entry name" value="Cit_transptr-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43302">
        <property type="entry name" value="TRANSPORTER ARSB-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43302:SF5">
        <property type="entry name" value="TRANSPORTER ARSB-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03600">
        <property type="entry name" value="CitMHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00758">
        <property type="entry name" value="ARSENICPUMP"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="31"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="61"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="94"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="138"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="176"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="223"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="251"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="281"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="357"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="402"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="domain" description="Citrate transporter-like" evidence="9">
        <location>
            <begin position="30"/>
            <end position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="420" mass="44287" checksum="174185DA96E23D2F" modified="2008-05-20" version="1">MYLGEVYSIAIIAVVVIGMLLRPLYPKLPVWSLMSLAAFIAIVPGPLSIDQIPSVVNFEVLFFLVGMFSIVALAESSGLLDAAAYWFLSLFKSRYGLAVGSSLLFGLLAAVAVNDTVALMGPPIAAVLARAAGLPPKFAFLLLAYSLTIGSVMTPVGNPQNMLIAVTSGIQAPFIAFFKTLALPTLINLVVTPLLLAKMMGVENGRVAIAASPWEAVKNKRDAAVAAAGLAAAVAAMVANDVAAVSGAPHIHNIGLIPFVVATFVYFLASDPRDLLSRVDWGTILFFTTMFIAMKAVWDGGVLQPIISAALPTYQGTVHDVLAITALSLGLSQILSNVPFVNLFSAYLTQAGADERAWLTLAMASTIAGNLTLLGAASNIIILEVLEKRYHTSVSFAEFLKYGAAITAVNIAIYLPFLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Q1</accession>
    <name>B1Y8Q1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1202</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350549.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Q1"/>
    <dbReference type="GeneID" id="6166318"/>
    <dbReference type="KEGG" id="tne:Tneu_1202"/>
    <dbReference type="eggNOG" id="arCOG01356">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042889_0_0_2"/>
    <dbReference type="OrthoDB" id="358785at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.280">
        <property type="entry name" value="Cobalamin-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="entry name" value="tm_1862 like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051198">
        <property type="entry name" value="BchE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023980">
        <property type="entry name" value="CHP04013_B12-bd/rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR04013">
        <property type="entry name" value="B12_SAM_MJ_1487"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43409">
        <property type="entry name" value="ANAEROBIC MAGNESIUM-PROTOPORPHYRIN IX MONOMETHYL ESTER CYCLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43409:SF17">
        <property type="entry name" value="METHYLTHIOTRANSFERASE MJ0865-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01082">
        <property type="entry name" value="B12-binding_domain_containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="B12-binding" evidence="6">
        <location>
            <begin position="1"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="149"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="412" mass="45797" checksum="FC3D83239C6B7B9C" modified="2008-05-20" version="1">MILLARLYEGPNNGMAYAVAPVEDRYRVLPTRDPLADAAALSQKGERVLVLYSLSTPVFIEQWREIAEVASRYPVVAGGPHAVGDPLTLLKLGVKYVVVGDGEAALPAIVEREAEGGEEPPPNTITAVDGRPRAGRRVYVELVHRTYSRSLEVYPPIEIMRSCVYRCAFCQTWAQGRVRFRPLENVVELAKAYVAAGHRAIRFIAPVGFLYGSPDGRTPSPDALAALLKAVREVGGVPHLGTFPSETRPETVTRDVLKAVKPYVANRRISFGLQTASDKLLKLTKRDHDVAAVEEAVKTAVSMGFKPVVDVIGGLPGEEEDDVVKTVREMEKLVAMGANIRMHYYIPLPGTPLWGRRPAPPHPLYEQFIKRHRRKVEGYWREQIELSRRIVETYRELDVYLRARTTPSSTAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8W4</accession>
    <name>B1Y8W4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 11">7-cyano-7-deazaguanine synthase</fullName>
            <ecNumber evidence="9 11">6.3.4.20</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">7-cyano-7-carbaguanine synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Archaeosine biosynthesis protein QueC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">PreQ(0) synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">queC</name>
        <name evidence="12" type="ordered locus">Tneu_1266</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 11">Catalyzes the ATP-dependent conversion of 7-carboxy-7-deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 11">
            <text>7-carboxy-7-carbaguanine + NH4(+) + 2 ATP = 7-cyano-7-carbaguanine + 2 AMP + 2 diphosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:27982"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:45075"/>
            <dbReference type="ChEBI" id="CHEBI:61036"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="11">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 11">Purine metabolism; 7-cyano-7-deazaguanine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8 11">Belongs to the QueC family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.20" evidence="9 11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350612.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8W4"/>
    <dbReference type="STRING" id="444157.Tneu_1266"/>
    <dbReference type="GeneID" id="6165869"/>
    <dbReference type="KEGG" id="tne:Tneu_1266"/>
    <dbReference type="eggNOG" id="arCOG00039">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081854_1_0_2"/>
    <dbReference type="OrthoDB" id="6532at2157"/>
    <dbReference type="UniPathway" id="UPA00391"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016879">
        <property type="term" value="F:ligase activity, forming carbon-nitrogen bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01995">
        <property type="entry name" value="QueC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01633">
        <property type="entry name" value="QueC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018317">
        <property type="entry name" value="QueC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42914">
        <property type="entry name" value="7-CYANO-7-DEAZAGUANINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42914:SF1">
        <property type="entry name" value="7-CYANO-7-DEAZAGUANINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06508">
        <property type="entry name" value="QueC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006293">
        <property type="entry name" value="ExsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="17"/>
            <end position="27"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="218"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="232"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00037768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00037993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00039149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB40193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="275" mass="30607" checksum="772039F207FEA405" modified="2008-05-20" version="1">MAVRPAVEKPCRAVAVVSGGPDSTCYASLWLRRGCDVHALSFLYGQKAAVEVEKAQVLLRKIDELAAARGWGRVVEHRVVDLSALGSLWRGTQLTDAALAVEKEYTPTVVVPIRNVVMAAVATAYAYTIRSATGAKTYVVYGAHYDDVKPRKDTWEPLYPDCSPECVEALQTAFRICHFRAERDVEIWTPSREGLKKSQLLKMCHEEIGDLIYETWSCYKSGEAHCGECESCRNRHAAFMEAGLPDCTTYLAPPGPGFERRGRFYVHVSCAKLRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Z0</accession>
    <name>B1Y8Z0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transmembrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1292</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350638.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Z0"/>
    <dbReference type="GeneID" id="6164760"/>
    <dbReference type="KEGG" id="tne:Tneu_1292"/>
    <dbReference type="eggNOG" id="arCOG05553">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1582950_0_0_2"/>
    <dbReference type="OrthoDB" id="26040at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="160" mass="18177" checksum="60C3F5DEBE332DD4" modified="2008-05-20" version="1">MDLGQLLGAVSQYMKHPVVGGWVWFMIIAFALAFIASIPPRRPLGSWLGDFFIRWGLAGILVWFVVNGLWAIREVMGQRLILPFTPLEAYLEYATVWSAVLTGMATFLFFGSTLLLRAIFAREELPRGVVYYRQEVVIADQNAQSTKKIPAVVVDRRRRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y906</accession>
    <name>B1Y906_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Starch synthase</fullName>
            <ecNumber evidence="5">2.4.1.21</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1308</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.4.1.21" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350654.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y906"/>
    <dbReference type="STRING" id="444157.Tneu_1308"/>
    <dbReference type="CAZy" id="GT5">
        <property type="family name" value="Glycosyltransferase Family 5"/>
    </dbReference>
    <dbReference type="GeneID" id="6165503"/>
    <dbReference type="KEGG" id="tne:Tneu_1308"/>
    <dbReference type="eggNOG" id="arCOG01420">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009583_18_5_2"/>
    <dbReference type="OrthoDB" id="132546at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009011">
        <property type="term" value="F:alpha-1,4-glucan glucosyltransferase (ADP-glucose donor) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013534">
        <property type="entry name" value="Starch_synth_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45825:SF11">
        <property type="entry name" value="ALPHA AMYLASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45825">
        <property type="entry name" value="GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08323">
        <property type="entry name" value="Glyco_transf_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Starch synthase catalytic" evidence="4">
        <location>
            <begin position="9"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyl transferase family 1" evidence="3">
        <location>
            <begin position="294"/>
            <end position="439"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="482" mass="53917" checksum="F043775639C89CC7" modified="2008-05-20" version="1">MRAPEKIRRVYIIAMEFGGLVKVGGLGEAVRQYAVGLARRGYDVTVLMPSHGRHLDPNRGFDLYPLDFRACGERRGQDGGAYPYCLGAEATYVEGVKVVMFKGLDYTTGHIFDRWGVYEYAEEKASLLARAAAAFAERFGLPDLIHVNDWPTVLAGVALRDAAERRGLAIPLLFTVHLSWDYRFPWHYAEWSGLQNRRHPVWRVCCHRWEHYSAVWDEGWGSVERFGVVEADAVSTVSYGYLEELLRKYGEWIRPKTCVVYNATDWSLKEVEGVSEGDVWRLVEEVERLGVVGGLDKNGGLLLAVGRLTSQKGIDLAVRALDHAPSARLLVLGIPSGDFGYEEYVKRLVWERRGRAALSTAKIPPRLYKALHYVAKALVMPSRWEPFGISAIEAMALGTPVIAAKVGGLPEVVDGLGLLVEPEDVEGLGRAMEAVASGRYKPPPRQYIASYVDAKFRIGNVVDMLERCYEKARQFAYFRAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="94" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y918</accession>
    <name>B1Y918_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">DNA polymerase</fullName>
            <ecNumber evidence="7">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1320</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350666.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y918"/>
    <dbReference type="STRING" id="444157.Tneu_1320"/>
    <dbReference type="GeneID" id="6165352"/>
    <dbReference type="KEGG" id="tne:Tneu_1320"/>
    <dbReference type="eggNOG" id="arCOG00328">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000203_6_0_2"/>
    <dbReference type="OrthoDB" id="323192at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd05781">
        <property type="entry name" value="DNA_polB_B3_exo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.132.60">
        <property type="entry name" value="DNA polymerase family B, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.342.10">
        <property type="entry name" value="DNA Polymerase, chain B, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.690">
        <property type="entry name" value="Helix hairpin bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1600.10">
        <property type="entry name" value="Palm domain of DNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006172">
        <property type="entry name" value="DNA-dir_DNA_pol_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017964">
        <property type="entry name" value="DNA-dir_DNA_pol_B_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006133">
        <property type="entry name" value="DNA-dir_DNA_pol_B_exonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006134">
        <property type="entry name" value="DNA-dir_DNA_pol_B_multi_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042087">
        <property type="entry name" value="DNA_pol_B_thumb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023211">
        <property type="entry name" value="DNA_pol_palm_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050240">
        <property type="entry name" value="DNA_pol_type-B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00592">
        <property type="entry name" value="pol2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10322">
        <property type="entry name" value="DNA POLYMERASE CATALYTIC SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10322:SF23">
        <property type="entry name" value="DNA POLYMERASE DELTA CATALYTIC SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00136">
        <property type="entry name" value="DNA_pol_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03104">
        <property type="entry name" value="DNA_pol_B_exo1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00106">
        <property type="entry name" value="DNAPOLB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00486">
        <property type="entry name" value="POLBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00116">
        <property type="entry name" value="DNA_POLYMERASE_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0235">DNA replication</keyword>
    <keyword evidence="5 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 7" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="3 7" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA-directed DNA polymerase family B exonuclease" evidence="9">
        <location>
            <begin position="110"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="DNA-directed DNA polymerase family B multifunctional" evidence="8">
        <location>
            <begin position="367"/>
            <end position="763"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="784" mass="89074" checksum="33673AD712E893B0" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y936</accession>
    <name>B1Y936_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">6-pyruvoyl tetrahydropterin synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1339</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350684.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y936"/>
    <dbReference type="STRING" id="444157.Tneu_1339"/>
    <dbReference type="GeneID" id="6165263"/>
    <dbReference type="KEGG" id="tne:Tneu_1339"/>
    <dbReference type="eggNOG" id="arCOG02172">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1998860_0_0_2"/>
    <dbReference type="OrthoDB" id="25787at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.10">
        <property type="entry name" value="6-pyruvoyl tetrahydropterin synthase/QueD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007115">
        <property type="entry name" value="6-PTP_synth/QueD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038418">
        <property type="entry name" value="6-PTP_synth/QueD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01242">
        <property type="entry name" value="PTPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55620">
        <property type="entry name" value="Tetrahydrobiopterin biosynthesis enzymes-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="126" mass="13555" checksum="530B076476920854" modified="2008-05-20" version="1">MRTCVELKGSVSVAHNPSFSPKWARIHGHDYVITVGICREGYTDVVVDAAEAGDKFRALLASIDGKYLASPLENPPLEPSGVYTVPCGQPGVSGECLAKYIAELMGASWVRVCESGLGSPCFYFER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9B1</accession>
    <name>B1Y9B1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1415</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350759.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9B1"/>
    <dbReference type="STRING" id="444157.Tneu_1415"/>
    <dbReference type="GeneID" id="6164622"/>
    <dbReference type="KEGG" id="tne:Tneu_1415"/>
    <dbReference type="eggNOG" id="arCOG05579">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2285157_0_0_2"/>
    <dbReference type="OrthoDB" id="28175at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="101" mass="10690" checksum="6E90AD91B8040064" modified="2008-05-20" version="1">MKSATALLLLVPLALAATNSTDPFGKIAKTIDSVLTSVDNFLQNLKEVLKTHVASMSKTLSVILGLVGAFLYFSGINKYGGRSMLIGAVVLYILAEFVNGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9G1</accession>
    <name>B1Y9G1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HIT-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1465</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350809.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9G1"/>
    <dbReference type="STRING" id="444157.Tneu_1465"/>
    <dbReference type="GeneID" id="6165611"/>
    <dbReference type="KEGG" id="tne:Tneu_1465"/>
    <dbReference type="eggNOG" id="arCOG07221">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_171532_0_0_2"/>
    <dbReference type="OrthoDB" id="70008at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007529">
        <property type="entry name" value="Znf_HIT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04438">
        <property type="entry name" value="zf-HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HIT-type" evidence="1">
        <location>
            <begin position="2"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="86" mass="9448" checksum="F13342F3436ECDF3" modified="2008-05-20" version="1">MELCQICGFEKAELRCPRCGRRVCRHDWAGDRCAVCDSTLCRLCGRFFAVSTCAICGRPVCDGCSIRVGLGRVCRECAGLLEKLGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9G7</accession>
    <name>B1Y9G7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1471</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350815.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9G7"/>
    <dbReference type="GeneID" id="6165601"/>
    <dbReference type="KEGG" id="tne:Tneu_1471"/>
    <dbReference type="eggNOG" id="arCOG05588">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_867728_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="324" mass="36443" checksum="8A542894428F2EF5" modified="2008-05-20" version="1">MSNVVLVRVGDRDIRVDTVEDLEKLCSSLKELLQGECQYHSWYIRIPPERLLALLRKAYVKYTQGVVSVGDVISEYLEENKLSKSLARTITPTLSSLGLASSGRFTSSAVEVGRLLYEGRSSDARERLRALALKNCVLKEILERINDCAELEKATETVLASYGKSVRFDELKYTVELLKMVSPRCRECDLRCATAETIYACGERIIQLAAPHIRELFEKLDISLLPEHLNYVNAEPSTYLLSVKGTAKQIGLILLGPPVEGADLQQMKNALARLDERVVEGVYEVYIKILPILEGDERCKSVKFLVEVVRGDLERVSKFVKPSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9I6</accession>
    <name>B1Y9I6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Exosome complex exonuclease Rrp41</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1491</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9I6"/>
    <dbReference type="STRING" id="444157.Tneu_1491"/>
    <dbReference type="KEGG" id="tne:Tneu_1491"/>
    <dbReference type="eggNOG" id="arCOG01575">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3113214_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.70">
        <property type="entry name" value="GHMP Kinase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027408">
        <property type="entry name" value="PNPase/RNase_PH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="50" mass="5380" checksum="5158495EB81CA56F" modified="2008-05-20" version="1">MKKPPVPLLQGGVRADGRAPDQMREVQISVGVISNADGSAMVPHYAHERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9I7</accession>
    <name>B1Y9I7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1492</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350835.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9I7"/>
    <dbReference type="GeneID" id="6165488"/>
    <dbReference type="KEGG" id="tne:Tneu_1492"/>
    <dbReference type="eggNOG" id="arCOG05593">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1253631_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="216" mass="23971" checksum="44896D6FE4AC02EA" modified="2008-05-20" version="1">MNASESKIVGWVDHFDYYGPLEDPSILEEPKYLTASVILSQSEAGFQHAVRGWSRFGTPEVVEAVYAYVIQMRRGVLDRWGLLQKLLNLLPRATVGDILALQRVLKLGLGITTCDLGLVVLSYVQVAGGPPPRRPPTALFELRESDAVLYVTRNNSGAGVYDGETMCVLPMSEVEPRHPLYEAYTAGFRIYTEGFPSQGDLCVVHRKLGLRCRELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9J7</accession>
    <name>B1Y9J7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sugar phospate transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1502</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350845.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9J7"/>
    <dbReference type="STRING" id="444157.Tneu_1502"/>
    <dbReference type="GeneID" id="6165821"/>
    <dbReference type="KEGG" id="tne:Tneu_1502"/>
    <dbReference type="eggNOG" id="arCOG05599">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_732824_0_0_2"/>
    <dbReference type="OrthoDB" id="15372at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.10.10">
        <property type="entry name" value="Hexapeptide repeat proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050065">
        <property type="entry name" value="GlmU-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43584:SF8">
        <property type="entry name" value="N-ACETYLMURAMATE ALPHA-1-PHOSPHATE URIDYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43584">
        <property type="entry name" value="NUCLEOTIDYL TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="Trimeric LpxA-like enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="334" mass="36397" checksum="1B233047C69ED54A" modified="2008-05-20" version="1">MEIGLVGRINPPLLTPAPYLVAGGFRIVELAALALCDEGKVVVYVEEAADLPLTLEGCRFEVRAGVPPDVPKIHVGCAPHLLRSRSLVCGGSSVSLGGEPAVAEPLESVADLVEANVDVMKLALRRLAELGVELVKGDYRGEVKGPVYLRGRIYEYTYVEGPAVVGPKSAVLPFTYVRPGTTLYFDSRLRDEGKNAILDSYVRKQHGGYLGDSYVSSFVNFGAGTTVSNLKNTLGPIRPSYTPKSYRKLGPVVGEFVKTAIGTLIYGGKYVGPLSHLYGLVDRDVPPLTIYRGGVAQPMDAEKAREYIRRDLAQFGREDLYRFYISKLFEKPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9L3</accession>
    <name>B1Y9L3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1518</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350861.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9L3"/>
    <dbReference type="STRING" id="444157.Tneu_1518"/>
    <dbReference type="GeneID" id="6166124"/>
    <dbReference type="KEGG" id="tne:Tneu_1518"/>
    <dbReference type="eggNOG" id="arCOG01240">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1656948_0_0_2"/>
    <dbReference type="OrthoDB" id="28139at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="alpha/beta knot"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="158" mass="17656" checksum="3CDEC5D32BE3D5AD" modified="2008-05-20" version="1">MRRFLVITTQQKINEEPHIYAKILVAALLISNGVRQDAEAVYHLVDQRKTVKIIGARVKRLFPDEESSVGFLRKAVAGEKLPGVVVKRDQGDLVVGMALGPSGRGRCAPRTPFTYILKFVEYDVEPECGLGLEKIPPHHQVVIVNIEVDRALRRGLHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9M1</accession>
    <name>B1Y9M1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">2-oxoacid oxidoreductase (ferredoxin)</fullName>
            <ecNumber evidence="2">1.2.7.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1526</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a 2-oxocarboxylate + 2 oxidized [2Fe-2S]-[ferredoxin] + CoA = an acyl-CoA + 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:42316"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="1.2.7.11"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterodimer composed of an alpha and a beta subunit.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.11" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350869.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9M1"/>
    <dbReference type="STRING" id="444157.Tneu_1526"/>
    <dbReference type="GeneID" id="6166174"/>
    <dbReference type="KEGG" id="tne:Tneu_1526"/>
    <dbReference type="eggNOG" id="arCOG01601">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058423_0_0_2"/>
    <dbReference type="OrthoDB" id="296931at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018491">
        <property type="term" value="F:2-oxobutyrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03376">
        <property type="entry name" value="TPP_PFOR_porB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.970">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051479">
        <property type="entry name" value="PorB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme_TPP-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF008818">
        <property type="entry name" value="PRK11864.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF008819">
        <property type="entry name" value="PRK11865.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42897:SF1">
        <property type="entry name" value="2-OXOACID OXIDOREDUCTASE (FERREDOXIN)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42897">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiamine pyrophosphate enzyme TPP-binding" evidence="5">
        <location>
            <begin position="70"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00048893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="301" mass="32886" checksum="4D4F68522EDB730F" modified="2008-05-20" version="1">MTFRLDQLPKKRYVIPGNAACAGCGMMIGLKILGMALGDESVLVIPASCASVVQGLAPKTGLAFPILNVPFASSAAVATGIAEAYKALGVRGHVVVWAGDGGTADIGFATLSGAAERNSNVIYVMYDNEAYMNTGIQRSSSTPRSAWTTTTPSGKRERRKDVALLMAMHGVPYVATASIAYPHDFYRKLKRAAEVEGFRFIHLQTPCPPGWRFDPAKTVEVARLAVETGAWILWEYDKGVLKVNPPSDRFADKSKRRPLVEYVKLQGRFAHLSESDIKALEEEIEERWRLILALSSALNQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9M2</accession>
    <name>B1Y9M2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2-oxoacid oxidoreductase (ferredoxin)</fullName>
            <ecNumber evidence="3">1.2.7.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1527</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>a 2-oxocarboxylate + 2 oxidized [2Fe-2S]-[ferredoxin] + CoA = an acyl-CoA + 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:42316"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="1.2.7.11"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Heterodimer composed of an alpha and a beta subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterotetramer of one alpha, one beta, one delta and one gamma chain.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.11" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350870.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9M2"/>
    <dbReference type="STRING" id="444157.Tneu_1527"/>
    <dbReference type="GeneID" id="6166147"/>
    <dbReference type="KEGG" id="tne:Tneu_1527"/>
    <dbReference type="eggNOG" id="arCOG01608">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002569_5_0_2"/>
    <dbReference type="OrthoDB" id="372068at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018491">
        <property type="term" value="F:2-oxobutyrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.970:FF:000012">
        <property type="entry name" value="Pyruvate:ferredoxin (Flavodoxin) oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033412">
        <property type="entry name" value="PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050722">
        <property type="entry name" value="Pyruvate:ferred/Flavod_OxRd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32154">
        <property type="entry name" value="PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32154:SF0">
        <property type="entry name" value="PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17147">
        <property type="entry name" value="PFOR_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01855">
        <property type="entry name" value="POR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="TK C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyruvate flavodoxin/ferredoxin oxidoreductase pyrimidine binding" evidence="6">
        <location>
            <begin position="18"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="domain" description="Pyruvate:ferredoxin oxidoreductase core" evidence="7">
        <location>
            <begin position="266"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00048893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="382" mass="42002" checksum="82F938443A7BA3E7" modified="2008-05-20" version="1">MTALLKTALTGNHAVAYAVKMAKPHVIAAYPITPQTTIVEKLAEFVERGELKARFINVESEYGAMSVVYGAAMAGARVFTATSSHGLLYMYEMTWWAALSRAPIVMAVATRTIGPIWNIHVEHNDILTLRDSGWLIAMAETAQEAFDLTIQAFKIAESAVLPVSVGIDGFVLSHSTEPVEVPPQEVVDSFLPPRRADVPLLLRPGEPITFGNLPSDNRIHARYKIEAVYRAQQEAKDVVVQADREYGKLTGRSYGGLVEWYRAEDAEDVVVCAGAWCSDAKRAVDALRSRDIPVGLLRLRFIRPFPTEEVKRLSQYRRAVVFDRDITPLGGVLGVELKAAVPDAEVVNIVAGIAGVDFDAEAFYRVISNAVEGRYRGVEFVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9P0</accession>
    <name>B1Y9P0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0004</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9P0"/>
    <dbReference type="STRING" id="444157.Tneu_0004"/>
    <dbReference type="KEGG" id="tne:Tneu_0004"/>
    <dbReference type="eggNOG" id="arCOG00194">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2534816_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="83" mass="9095" checksum="3428B4BCF9714C2A" modified="2008-05-20" version="1">MRRRLVVAALLTVGALALLLDEPTAGVDVVHALEVGYAKSRGPRVARCDPRAAAGPGEPQRGLARKRRQQIITWRKSAIWRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9P3</accession>
    <name>B1Y9P3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">tRNA (cytosine(72)-C(5))-methyltransferase</fullName>
            <shortName evidence="5">tRNA:m(5)C72 MTase</shortName>
            <ecNumber evidence="5">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0007</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the C5 position of cytosine 72 in several tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>cytidine(72) in tRNA + S-adenosyl-L-methionine = 5-methylcytidine(72) in tRNA + S-adenosyl-L-homocysteine + H(+)</text>
            <dbReference type="Rhea" id="RHEA:61988"/>
            <dbReference type="Rhea" id="RHEA-COMP:15996"/>
            <dbReference type="Rhea" id="RHEA-COMP:15997"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74483"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349387.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9P3"/>
    <dbReference type="STRING" id="444157.Tneu_0007"/>
    <dbReference type="GeneID" id="6164654"/>
    <dbReference type="KEGG" id="tne:Tneu_0007"/>
    <dbReference type="eggNOG" id="arCOG00973">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="eggNOG" id="arCOG00986">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005316_1_0_2"/>
    <dbReference type="OrthoDB" id="14725at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016428">
        <property type="term" value="F:tRNA (cytidine-5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001510">
        <property type="term" value="P:RNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07953">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.10">
        <property type="entry name" value="PUA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02237">
        <property type="entry name" value="NSUN6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049560">
        <property type="entry name" value="MeTrfase_RsmB-F_NOP2_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001678">
        <property type="entry name" value="MeTrfase_RsmB-F_NOP2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043699">
        <property type="entry name" value="NSUN6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002478">
        <property type="entry name" value="PUA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036974">
        <property type="entry name" value="PUA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023267">
        <property type="entry name" value="RCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004521">
        <property type="entry name" value="Uncharacterised_CHP00451"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00451">
        <property type="entry name" value="unchar_dom_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22807">
        <property type="entry name" value="NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22807:SF34">
        <property type="entry name" value="TRNA (CYTOSINE(72)-C(5))-METHYLTRANSFERASE NSUN6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01189">
        <property type="entry name" value="Methyltr_RsmB-F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01472">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02008">
        <property type="entry name" value="RCMTFAMILY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00359">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="PUA domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50890">
        <property type="entry name" value="PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51686">
        <property type="entry name" value="SAM_MT_RSMB_NOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SAM-dependent MTase RsmB/NOP-type" evidence="6">
        <location>
            <begin position="29"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="319"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="230"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="253"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="272"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="299"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB38965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="375" mass="42070" checksum="6C8EA9AD0ECA3BCF" modified="2008-05-20" version="1">MNIHGIEIDDELYKHFLQFLSDSEIDALFLSITRPPRRYYIRVNTAKTTREELIGRLRARGVTAYPDERFDDALWMPVEGPFKIPTARKRVVVDKKAAESVMMGADLYAPGVVKTDHVRRGEEVNVVSDNGVVVAFGVAVSDSDEVMKTRRGLYIRVETSLYKTPKIRDLPEYRDGLFYSQSLPAIAVGHVAKRAGAATAVDLNAAPGGKATHLAQMDMRVVAFDRSWPKIERLKREVERLGLAGNIDVILHDSRYVDRDFPRLRADLALVDPPCTDIGVRPKIYHRVTMEMAKTLSRYQLQFLKTALKIASNVIYSTCTLTYIENEDVVKKSGAVPADVGLDVGGPGWGCPECRRFLPHVHDTPGFFIALLSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9P8</accession>
    <name>B1Y9P8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ATPase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0012</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9P8"/>
    <dbReference type="STRING" id="444157.Tneu_0012"/>
    <dbReference type="KEGG" id="tne:Tneu_0012"/>
    <dbReference type="eggNOG" id="arCOG05455">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_175269_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="66"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="111" mass="12788" checksum="8C6CF9C49E90EECB" modified="2008-05-20" version="1">MDIGLYMLKIEEILKKLEEVDKAVKSADEVKMKALALSDQISRKYSDEIVKKIEEIVNNAVVNYKKNAAEEAKKQAEKILQNAEERGRKILQRYQERRGELVSRALAILNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9S0</accession>
    <name>B1Y9S0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1546</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9S0"/>
    <dbReference type="KEGG" id="tne:Tneu_1546"/>
    <dbReference type="eggNOG" id="arCOG05682">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2257468_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="85" mass="9407" checksum="9BAEC2BD75B3858A" modified="2008-05-20" version="1">MGIPVVLGPALLAKALGCPTRCECDVVIHRDDLERVGSRDCVWTIEDPSFIHRHIWVGGYPHISLEDMAKIKGPSDVVECLLSRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="38" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9S1</accession>
    <name>B1Y9S1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1547</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350890.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9S1"/>
    <dbReference type="GeneID" id="58787347"/>
    <dbReference type="KEGG" id="tne:Tneu_1547"/>
    <dbReference type="eggNOG" id="arCOG12859">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3003293_0_0_2"/>
    <dbReference type="OrthoDB" id="380468at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="56" mass="6615" checksum="7310F06EC7B69F76" modified="2008-05-20" version="1">MKIYVRKIDDTLVPEFVEVKPNKLSKVRLSDLYIILEEDFNLLEKAEDVRHLLGDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="106" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9X2</accession>
    <name>B1Y9X2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Adenosylhomocysteinase</fullName>
            <ecNumber evidence="5">3.13.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">S-adenosyl-L-homocysteine hydrolase</fullName>
            <shortName evidence="5">AdoHcyase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ahcY</name>
        <name evidence="10" type="ordered locus">Tneu_1599</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>S-adenosyl-L-homocysteine + H2O = L-homocysteine + adenosine</text>
            <dbReference type="Rhea" id="RHEA:21708"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
            <dbReference type="EC" id="3.13.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 7">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
        <text evidence="5 7">Binds 1 NAD(+) per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Amino-acid biosynthesis; L-homocysteine biosynthesis; L-homocysteine from S-adenosyl-L-homocysteine: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 8">Belongs to the adenosylhomocysteinase family.</text>
    </comment>
    <dbReference type="EC" id="3.13.2.1" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350941.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9X2"/>
    <dbReference type="STRING" id="444157.Tneu_1599"/>
    <dbReference type="GeneID" id="6165060"/>
    <dbReference type="KEGG" id="tne:Tneu_1599"/>
    <dbReference type="eggNOG" id="arCOG04137">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025194_0_2_2"/>
    <dbReference type="OrthoDB" id="8479at2157"/>
    <dbReference type="UniPathway" id="UPA00314">
        <property type="reaction ID" value="UER00076"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004013">
        <property type="term" value="F:adenosylhomocysteinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071269">
        <property type="term" value="P:L-homocysteine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033353">
        <property type="term" value="P:S-adenosylmethionine cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00401">
        <property type="entry name" value="SAHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000004">
        <property type="entry name" value="Adenosylhomocysteinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1480">
        <property type="entry name" value="Adenosylhomocysteinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00563">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042172">
        <property type="entry name" value="Adenosylhomocyst_ase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000043">
        <property type="entry name" value="Adenosylhomocysteinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015878">
        <property type="entry name" value="Ado_hCys_hydrolase_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020082">
        <property type="entry name" value="S-Ado-L-homoCys_hydrolase_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00936">
        <property type="entry name" value="ahcY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004005">
        <property type="entry name" value="PRK05476.2-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23420">
        <property type="entry name" value="ADENOSYLHOMOCYSTEINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23420:SF0">
        <property type="entry name" value="ADENOSYLHOMOCYSTEINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05221">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00670">
        <property type="entry name" value="AdoHcyase_NAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001109">
        <property type="entry name" value="Ad_hcy_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00996">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00997">
        <property type="entry name" value="AdoHcyase_NAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52283">
        <property type="entry name" value="Formate/glycerate dehydrogenase catalytic domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00738">
        <property type="entry name" value="ADOHCYASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00739">
        <property type="entry name" value="ADOHCYASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 5 7" id="KW-0520">NAD</keyword>
    <keyword evidence="2 5" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S-adenosyl-L-homocysteine hydrolase NAD binding" evidence="9">
        <location>
            <begin position="204"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <begin position="170"/>
            <end position="172"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="204"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="233"/>
            <end position="238"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="235"/>
            <end position="240"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="257"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="292"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <begin position="313"/>
            <end position="315"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="360"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="367"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001109-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001109-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="436" mass="48090" checksum="ECBEE00FACC56F02" modified="2008-05-20" version="1">MESRVKDLSLAEKGREQLYWAERNMPVLLEIRRRFEREKPLAGQTVAACLHVTKETGVLVRTLAAGGARVVVIPSNPLSTQDEVAAALAQEGIHVYAWRGMSERDYYNAIGFALSFQPTVTLDDGADLTSTIHKLRHGIRDKTLDYVMETAGSVDAEKLVAGLRGGTEETTTGVLRLRALKSAGKLLYPIIAVNESYTKYLFDNRYGTGQSTWDGVLRATNLLIAGKNVVVAGYGWVGRGIAMRARGLGARRVIVVEVDPVRALEAVFDGFEVMPMDEAAKVGDIFITATGNIRAINLGHIFKMKDGAVLANAGHFNVEIDVAGLERVAVAKRQIRQYLEEYTLPNGRRVYLIGEGRLVNLVAAEGHPSEVMDLSFANQALAAEYVVKNKLAIDVYKLPDELDREVARLKLKTMGIEIEELTEEQRQYLTSWELGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA01</accession>
    <name>B1YA01_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">MBL fold metallo-hydrolase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1628</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350970.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA01"/>
    <dbReference type="GeneID" id="6165537"/>
    <dbReference type="KEGG" id="tne:Tneu_1628"/>
    <dbReference type="eggNOG" id="arCOG00497">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070010_0_1_2"/>
    <dbReference type="OrthoDB" id="28313at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050114">
        <property type="entry name" value="UPF0173_UPF0282_UlaG_hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43546:SF8">
        <property type="entry name" value="METALLO-BETA-LACTAMASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43546">
        <property type="entry name" value="UPF0173 METAL-DEPENDENT HYDROLASE MJ1163-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13483">
        <property type="entry name" value="Lactamase_B_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="221" mass="24670" checksum="DEC0B27F146A5617" modified="2008-05-20" version="1">MPFRFGDFEISWLGHDTFRVVRGSVVLYFDPFQVQVGEPKADYILVTHEHFDHCDPPSIKRLAKPSTVVVAPRIARRCLEGVGVVEVGPGDVKDLGVFKVVAYPAYNVNKFRDKSRGVVFHPREDGRVAYLVEWGGVRVFHAGDSDFVPEFREVKADIVLVPVSGVYVMTAEEAAEFVNAVSPRVAIPMHYGSIVGSRRDAERFKSLVRGGVEVVILDREI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA66</accession>
    <name>B1YA66_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">VIT family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0082</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349461.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA66"/>
    <dbReference type="STRING" id="444157.Tneu_0082"/>
    <dbReference type="GeneID" id="6164479"/>
    <dbReference type="KEGG" id="tne:Tneu_0082"/>
    <dbReference type="eggNOG" id="arCOG01091">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1615369_0_0_2"/>
    <dbReference type="OrthoDB" id="28820at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="165" mass="16958" checksum="127D1266A22BF5CD" modified="2008-05-20" version="1">MRYLVLGAIDGIISAGTLSASLILRGGAVSLDFALSLAVVVASINSLTVFVAEFSHQLREVREVSYKVSLREEAPRWTLLHRRALFSTFRSALSNFAASLLGAVSVLVPASFAPHATFVAIAAAVLAASAAVAGGSPREFLEFAAMAGAAIGVGLAVGLAFPVIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA69</accession>
    <name>B1YA69_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">AAA ATPase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0085</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349464.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA69"/>
    <dbReference type="STRING" id="444157.Tneu_0085"/>
    <dbReference type="GeneID" id="6164450"/>
    <dbReference type="KEGG" id="tne:Tneu_0085"/>
    <dbReference type="eggNOG" id="arCOG05468">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1500336_0_0_2"/>
    <dbReference type="OrthoDB" id="28488at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="179" mass="19752" checksum="059FDC7CFB6DEA10" modified="2008-05-20" version="1">MKPGEELTLGELEKLDMGHDFKLALSRAAEGGNVYLVGPPGSGKTAMLRKLGLYLSRLGRGALYLKLEWVKYGWSLSDYVKHYGDKSRQLLGGEIGDVVLLDDGELLWGYGSAYRNIVRDVRGRQIVGAFREFDVDAATLLFGDGLTIYIQRHHAPREAASKVPLGLAFLNKTVEITVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA77</accession>
    <name>B1YA77_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="12">DNA-(Apurinic or apyrimidinic site) lyase</fullName>
            <ecNumber evidence="12">4.2.99.18</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0093</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Nth/MutY family.</text>
    </comment>
    <dbReference type="EC" id="4.2.99.18" evidence="12"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349472.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA77"/>
    <dbReference type="STRING" id="444157.Tneu_0093"/>
    <dbReference type="GeneID" id="6164318"/>
    <dbReference type="KEGG" id="tne:Tneu_0093"/>
    <dbReference type="eggNOG" id="arCOG00459">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012862_3_4_2"/>
    <dbReference type="OrthoDB" id="19248at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140078">
        <property type="term" value="F:class I DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019104">
        <property type="term" value="F:DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006285">
        <property type="term" value="P:base-excision repair, AP site formation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="entry name" value="Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.30">
        <property type="entry name" value="Hypothetical protein, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003651">
        <property type="entry name" value="Endonuclease3_FeS-loop_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004035">
        <property type="entry name" value="Endouclease-III_FeS-bd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10359">
        <property type="entry name" value="A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10359:SF18">
        <property type="entry name" value="ENDONUCLEASE III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10576">
        <property type="entry name" value="EndIII_4Fe-2S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001435">
        <property type="entry name" value="Nth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00525">
        <property type="entry name" value="FES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="DNA-glycosylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00764">
        <property type="entry name" value="ENDONUCLEASE_III_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="9" id="KW-0234">DNA repair</keyword>
    <keyword evidence="10" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="12" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HhH-GPD" evidence="11">
        <location>
            <begin position="39"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="222" mass="24809" checksum="0B80B54A23AA2237" modified="2008-05-20" version="1">MDYIEVVDRYVQLRVEEFIAPVVWRSGGNLFELVVAVVLSQNTSDKNAFKAFNSLKRALGSITPEAVAKLAEEELAALIKPAGMYRIRARALKALAEAFLKHGITPQRLLEMGAERARAFLMSLPGVGKKTADVVLVNIGLPAFPVDTHITRIARRWGIGRSYDEISRWFMDRLPPARYLEFHLKLIQFGRDVCRARSPRCGVCPIGERCPSFKSAGRSPVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA86</accession>
    <name>B1YA86_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">prephenate dehydratase</fullName>
            <ecNumber evidence="2">4.2.1.51</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0102</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-phenylalanine biosynthesis; phenylpyruvate from prephenate: step 1/1.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.51" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349481.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA86"/>
    <dbReference type="STRING" id="444157.Tneu_0102"/>
    <dbReference type="GeneID" id="6164398"/>
    <dbReference type="KEGG" id="tne:Tneu_0102"/>
    <dbReference type="eggNOG" id="arCOG00255">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035008_0_2_2"/>
    <dbReference type="UniPathway" id="UPA00121">
        <property type="reaction ID" value="UER00345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004664">
        <property type="term" value="F:prephenate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009094">
        <property type="term" value="P:L-phenylalanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04905">
        <property type="entry name" value="ACT_CM-PDT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008242">
        <property type="entry name" value="Chor_mutase/pphenate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001086">
        <property type="entry name" value="Preph_deHydtase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21022">
        <property type="entry name" value="PREPHENATE DEHYDRATASE P PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21022:SF19">
        <property type="entry name" value="PREPHENATE DEHYDRATASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00800">
        <property type="entry name" value="PDT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001500">
        <property type="entry name" value="Chor_mut_pdt_Ppr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="ACT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51171">
        <property type="entry name" value="PREPHENATE_DEHYDR_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="6 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-0584">Phenylalanine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Prephenate dehydratase" evidence="7">
        <location>
            <begin position="49"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="8">
        <location>
            <begin position="223"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="310" mass="33399" checksum="C457F12BDA2EB415" modified="2008-05-20" version="1">MFINAGVYRLEEELYALLRERAKYNVPPLIDGPLAPLIASAVSRAHSPAVAYLGPERSFTWEAAASLYPHGTHVAYKTITEVFKAVEKGAVDYGVVPFINSLEGPVGETVDALATHDVKILAMGEMRITLCLAKRGTPRVVYTHPHAAAQARKIISALGAEVVYTASTSEAVRELERCQDCAVIASPKALEGYEKTCGVEDGESYTRFAVLSREGGPGGSRAALIFAVPNVAGALYKALGPIARRGINMTLIYSRPTKLSPWDYFFLVEVEAGAGVEEALEEMRLYTTVLKLAGRYNIITIAQPAAGPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAB3</accession>
    <name>B1YAB3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">2-oxoacid oxidoreductase (ferredoxin)</fullName>
            <ecNumber evidence="5">1.2.7.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Tneu_0130</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>a 2-oxocarboxylate + 2 oxidized [2Fe-2S]-[ferredoxin] + CoA = an acyl-CoA + 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:42316"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="1.2.7.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Heterodimer composed of an alpha and a beta subunit.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.11" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349508.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAB3"/>
    <dbReference type="STRING" id="444157.Tneu_0130"/>
    <dbReference type="GeneID" id="6165306"/>
    <dbReference type="KEGG" id="tne:Tneu_0130"/>
    <dbReference type="eggNOG" id="arCOG01599">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048564_0_0_2"/>
    <dbReference type="OrthoDB" id="30755at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018491">
        <property type="term" value="F:2-oxobutyrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03375">
        <property type="entry name" value="TPP_OGFOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053399">
        <property type="entry name" value="2-oxoacid:Fd_oxidored_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051457">
        <property type="entry name" value="2-oxoacid:Fd_oxidoreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011896">
        <property type="entry name" value="OFOB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032686">
        <property type="entry name" value="PFO_beta_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme_TPP-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041171">
        <property type="entry name" value="Oxoac_fdxbeta_Archa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02177">
        <property type="entry name" value="PorB_KorB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48084">
        <property type="entry name" value="2-OXOGLUTARATE OXIDOREDUCTASE SUBUNIT KORB-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48084:SF2">
        <property type="entry name" value="PYRUVATE FERREDOXIN_FLAVODOXIN OXIDOREDUCTASE, BETA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12367">
        <property type="entry name" value="PFO_beta_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="Thiamine pyrophosphate enzyme TPP-binding" evidence="13">
        <location>
            <begin position="49"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="domain" description="Pyruvate ferredoxin oxidoreductase beta subunit C-terminal" evidence="14">
        <location>
            <begin position="200"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00048893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF12367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB39087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="307" mass="33932" checksum="1B2B7B932B2A92BF" modified="2008-05-20" version="1">MTRTPADYRWPRAPEWCPGCGHFGVLQAVYNAFAELDLDPARVVLVSGIGCSSRLPHYVRATSVHTIHGRAIPYALGIKLANPALEVIVVGGDGDLVAIGGNHLLHLGRRNVDMAVILMDNSVYGLTRGQAGPTLAAGVKLKAVPKANPQSGVNPLLLAIASGFTFVARGYAFDVRHTSRLIAEAIKHRGSAFLQILSPCVTYNNVMTRDWYEERIYKLDEDPSWDPVVRREEEAGEKIRRALDKIVEVDKIPLGVFYKNELVPTFEERYEATYDPTYRANPPALQRVESGGRTVVDFEKLVADRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAE2</accession>
    <name>B1YAE2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AAA ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1669</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351010.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAE2"/>
    <dbReference type="STRING" id="444157.Tneu_1669"/>
    <dbReference type="GeneID" id="6165144"/>
    <dbReference type="KEGG" id="tne:Tneu_1669"/>
    <dbReference type="eggNOG" id="arCOG01176">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071989_0_0_2"/>
    <dbReference type="OrthoDB" id="17644at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000725">
        <property type="term" value="P:recombinational repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:003503">
        <property type="entry name" value="P. aerophilum family 417, putative ATP binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32472">
        <property type="entry name" value="DNA REPAIR PROTEIN RADA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32472:SF10">
        <property type="entry name" value="DNA REPAIR PROTEIN RADA-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13479">
        <property type="entry name" value="AAA_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="341" mass="37619" checksum="FF9912454718039D" modified="2008-05-20" version="1">MLTIQEVASKGFTAIYGPPGSGKTSVAAKLADRIANRVLWISTNEPPSTLKNAFLRVGANAEKFYVYDFPRAFRTNIAKFIADHIHEYEALVVDTVNGLAPQGEKLEELVHGFLYQLSKEMPIIGVVEGVPRQVFYIADSLVRVGSRENALGHTVRHIKLVKSRFAPPSERILFDIVEGVGLVYIYPNKRPTVAKTPLVDDAALLGLGELYKSQIVGVYSADKKRLARRLEELAAARGVYYLSLYPPTTIPAELDEDKMRVATTFRDIVEVIYGIYSGRIKTRVFAVSGLRDVERIAGNDVVDYITAVASVAKYVDYVVDFELSGDGGGLSEAFLDARVKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAG3</accession>
    <name>B1YAG3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1690</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351031.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAG3"/>
    <dbReference type="STRING" id="444157.Tneu_1690"/>
    <dbReference type="GeneID" id="58787351"/>
    <dbReference type="KEGG" id="tne:Tneu_1690"/>
    <dbReference type="eggNOG" id="arCOG07461">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3057345_0_0_2"/>
    <dbReference type="OrthoDB" id="3973at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="56" mass="6151" checksum="5F4259C5EB7D8FD9" modified="2008-05-20" version="1">MFVVKCDSCGFVLYRGPDPKTVEAVLKMWGGVCPKCLSPLERRPIKIGIGLVKKVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAJ0</accession>
    <name>B1YAJ0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PilT protein domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1721</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351058.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAJ0"/>
    <dbReference type="STRING" id="444157.Tneu_1721"/>
    <dbReference type="GeneID" id="6165628"/>
    <dbReference type="KEGG" id="tne:Tneu_1721"/>
    <dbReference type="eggNOG" id="arCOG04116">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023387_0_0_2"/>
    <dbReference type="OrthoDB" id="7146at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1010">
        <property type="entry name" value="5'-nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052041">
        <property type="entry name" value="Nucleic_acid_metab_PIN/TRAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF010335">
        <property type="entry name" value="PRK13764.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11603">
        <property type="entry name" value="AAA FAMILY ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11603:SF147">
        <property type="entry name" value="MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="PIN domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="1">
        <location>
            <begin position="256"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="518" mass="58142" checksum="C6D2D4B930171612" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAJ1</accession>
    <name>B1YAJ1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1722</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351059.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAJ1"/>
    <dbReference type="STRING" id="444157.Tneu_1722"/>
    <dbReference type="GeneID" id="6165722"/>
    <dbReference type="KEGG" id="tne:Tneu_1722"/>
    <dbReference type="eggNOG" id="arCOG01774">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1072071_0_0_2"/>
    <dbReference type="OrthoDB" id="1018at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010420">
        <property type="term" value="F:polyprenyldihydroxybenzoate methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43464">
        <property type="entry name" value="METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43464:SF89">
        <property type="entry name" value="METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase type 11" evidence="1">
        <location>
            <begin position="58"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="259" mass="28808" checksum="63E4DB63490C38AB" modified="2008-05-20" version="1">MKPAQPSRPPAAKAVAEYYDSVARAYGDKYLGTWYYRTLYRKLGEVLDLYIRRGMRVLDVGAGTGFWTLYMQARGARVTALDISGESLKACRCGDKAQGDAASLPVRAGAYDAVTALGSVYNHLGDLEKAFAAAAHALRRGGLFIADIDNAVCLDMLYEYLLFQGLGRLRDALIRGVVRGVWESADGELPFNYYSYFYVKSALRRAGLEVVDARPIYLVPPLPSRLLQRRFRLKAFEKFDLLRRLAPLATTVVYVAAKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAN3</accession>
    <name>B1YAN3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Imidazoleglycerol-phosphate dehydratase</fullName>
            <ecNumber evidence="5">4.2.1.19</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0155</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 6/9.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.19" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349533.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAN3"/>
    <dbReference type="STRING" id="444157.Tneu_0155"/>
    <dbReference type="GeneID" id="6164989"/>
    <dbReference type="KEGG" id="tne:Tneu_0155"/>
    <dbReference type="eggNOG" id="arCOG04398">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044308_2_0_2"/>
    <dbReference type="OrthoDB" id="103579at2157"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004424">
        <property type="term" value="F:imidazoleglycerol-phosphate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:L-histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.230.40:FF:000003">
        <property type="entry name" value="Imidazoleglycerol-phosphate dehydratase HisB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.40">
        <property type="entry name" value="Imidazole glycerol phosphate dehydratase, domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038494">
        <property type="entry name" value="IGPD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000807">
        <property type="entry name" value="ImidazoleglycerolP_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020565">
        <property type="entry name" value="ImidazoleglycerP_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23133:SF2">
        <property type="entry name" value="IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23133">
        <property type="entry name" value="IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00475">
        <property type="entry name" value="IGPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00955">
        <property type="entry name" value="IGP_DEHYDRATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="4 5" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="187" mass="20496" checksum="9CE0F6948E155B7B" modified="2008-05-20" version="1">MSYVRETAETYVAVSLKAGERPRVETPIPFLTHMLETFLLYAGLGGTVEAREKRRLDDGHHLIEDVAIALGRALDQMLGDRGRIARFGWAAVPMDDAFALAAVDLGGRAYWVVKAKLPPADVGGYPLRMFPHWVRTLASEARATIHVYTRGVDPHHKVEAAHKALGLAFRQAMSPRGDVLSTKGVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAQ0</accession>
    <name>B1YAQ0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Signal-transduction protein with CBS domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0173</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAQ0"/>
    <dbReference type="STRING" id="444157.Tneu_0173"/>
    <dbReference type="KEGG" id="tne:Tneu_0173"/>
    <dbReference type="eggNOG" id="arCOG00606">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040681_12_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd09836">
        <property type="entry name" value="CBS_pair_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="entry name" value="CBS-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051257">
        <property type="entry name" value="Diverse_CBS-Domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080:SF2">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="CBS-domain pair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="9"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="74"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="130" mass="14232" checksum="B5B92209754825AD" modified="2008-05-20" version="1">MRTVRLRELVRDSVVSCYVDEPVECAVAKMYAANVGSVVVLERDGRPAGIITERDVVRLVAQEVDLRTPLGQVARRELVTASPDESVLSAAVKMVEHNIRHMPVVEGGRVVGVISIRDVLRALLTSEAFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAU0</accession>
    <name>B1YAU0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0214</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349590.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAU0"/>
    <dbReference type="STRING" id="444157.Tneu_0214"/>
    <dbReference type="GeneID" id="6164633"/>
    <dbReference type="KEGG" id="tne:Tneu_0214"/>
    <dbReference type="eggNOG" id="arCOG05487">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_111004_0_0_2"/>
    <dbReference type="OrthoDB" id="31276at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="215" mass="25306" checksum="DB94EA793C87BDAA" modified="2008-05-20" version="1">MEPYCDFDAAAAAIDNMLGELIREHFGDMPRRELDTIREFVFRDFMHYLATRAGIYSWRRFSEAKARQRLCIYVEKMWARLWDVASEWFALWKIKWNQRVRLVFSEEEFKRATQSVKWSSQLDKALKNIDVTELKLFVISNLVRNGEVAGVEQISEYLIRDELNAVVERHGPERAVEMYKTGALTARLLERINSLRANTDPLLLLKVDFGRTQLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAV4</accession>
    <name>B1YAV4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP1 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0229</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349604.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAV4"/>
    <dbReference type="STRING" id="444157.Tneu_0229"/>
    <dbReference type="GeneID" id="6164374"/>
    <dbReference type="KEGG" id="tne:Tneu_0229"/>
    <dbReference type="eggNOG" id="arCOG03712">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_118419_0_0_2"/>
    <dbReference type="OrthoDB" id="37218at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010268">
        <property type="entry name" value="PaREP1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05942">
        <property type="entry name" value="PaREP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="182" mass="20731" checksum="05DD2B29CA6533B2" modified="2008-05-20" version="1">MDMEVLERPLPKPSAEDYVNVRLLEALVEAGLALEYLRRGLVRNAAGKAFQAWKALMAALLRLELDKLKNIAKTGEERRWLESTAVPRVPTSRMTSLSQTLEDVGHVGVSAWTAMALKLHDYQYHGPDPDMALSKYRTREEAAKDVILLLRELVERVEAIRNRVRWSPELEKTLQTLKKEVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAW0</accession>
    <name>B1YAW0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase</fullName>
            <ecNumber evidence="9">1.1.1.302</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1742</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>2,5-diamino-6-(1-D-ribitylamino)pyrimidin-4(3H)-one 5'-phosphate + NAD(+) = 2,5-diamino-6-(1-D-ribosylamino)pyrimidin-4(3H)-one 5'-phosphate + NADH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:27274"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58890"/>
            <dbReference type="ChEBI" id="CHEBI:59545"/>
            <dbReference type="EC" id="1.1.1.302"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>2,5-diamino-6-(1-D-ribitylamino)pyrimidin-4(3H)-one 5'-phosphate + NADP(+) = 2,5-diamino-6-(1-D-ribosylamino)pyrimidin-4(3H)-one 5'-phosphate + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:27278"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58890"/>
            <dbReference type="ChEBI" id="CHEBI:59545"/>
            <dbReference type="EC" id="1.1.1.302"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; riboflavin biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HTP reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.302" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351079.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAW0"/>
    <dbReference type="STRING" id="444157.Tneu_1742"/>
    <dbReference type="GeneID" id="6165331"/>
    <dbReference type="KEGG" id="tne:Tneu_1742"/>
    <dbReference type="eggNOG" id="arCOG01484">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036590_4_1_2"/>
    <dbReference type="OrthoDB" id="10178at2157"/>
    <dbReference type="UniPathway" id="UPA00275"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008703">
        <property type="term" value="F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="entry name" value="Dihydrofolate Reductase, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006401">
        <property type="entry name" value="Rib_reduct_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011549">
        <property type="entry name" value="RibD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002734">
        <property type="entry name" value="RibDG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050765">
        <property type="entry name" value="Riboflavin_Biosynth_HTPR"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01508">
        <property type="entry name" value="rib_reduct_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00227">
        <property type="entry name" value="ribD_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38011:SF7">
        <property type="entry name" value="2,5-DIAMINO-6-RIBOSYLAMINO-4(3H)-PYRIMIDINONE 5'-PHOSPHATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38011">
        <property type="entry name" value="DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01872">
        <property type="entry name" value="RibD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="Dihydrofolate reductase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0521">NADP</keyword>
    <keyword evidence="6 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0686">Riboflavin biosynthesis</keyword>
    <feature type="domain" description="Bacterial bifunctional deaminase-reductase C-terminal" evidence="10">
        <location>
            <begin position="3"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00047550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="NCBIfam" id="TIGR01508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="217" mass="23698" checksum="12D4D32EF1FF1565" modified="2008-05-20" version="1">MRPYVYLAAAATIDGRIASKTGYSRLSCPHDLRRLHALRAAVDAVIVGANTAIVDNPRLTVRYVEGRNPLRVLIDGSLKAPTDLRMFDSSSPTIVFTTRKAPPEKAAELKARGVEVYVAEGDQVDPAEVLNVLYQRGVRKALLEGGGRTNWEFLSKCLVDEIVLTVTPYVFGSGVSLVEGAGFPTKEDAPFTLTLTSIKLCECGQEVVLTYRVRCKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAW9</accession>
    <name>B1YAW9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1751</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351088.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAW9"/>
    <dbReference type="STRING" id="444157.Tneu_1751"/>
    <dbReference type="GeneID" id="6166176"/>
    <dbReference type="KEGG" id="tne:Tneu_1751"/>
    <dbReference type="eggNOG" id="arCOG03770">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2550424_0_0_2"/>
    <dbReference type="OrthoDB" id="25785at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="84" mass="9785" checksum="210B9FE109F8A9CB" modified="2008-05-20" version="1">MSWDYLAVLLISFIMLMFFMYMFWRESAVRSRERPAEMYTVVKCGDGVERKRKYQEGDYVGKPVEDCAGGVVVGVFKEVAQQQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB14</accession>
    <name>B1YB14_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2-oxoacid oxidoreductase (ferredoxin)</fullName>
            <ecNumber evidence="3">1.2.7.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1796</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>a 2-oxocarboxylate + 2 oxidized [2Fe-2S]-[ferredoxin] + CoA = an acyl-CoA + 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:42316"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="1.2.7.11"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Heterodimer composed of an alpha and a beta subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterotetramer of one alpha, one beta, one delta and one gamma chain.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.11" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351133.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB14"/>
    <dbReference type="STRING" id="444157.Tneu_1796"/>
    <dbReference type="GeneID" id="6165118"/>
    <dbReference type="KEGG" id="tne:Tneu_1796"/>
    <dbReference type="eggNOG" id="arCOG01608">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002569_5_0_2"/>
    <dbReference type="OrthoDB" id="372068at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018491">
        <property type="term" value="F:2-oxobutyrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.970:FF:000012">
        <property type="entry name" value="Pyruvate:ferredoxin (Flavodoxin) oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033412">
        <property type="entry name" value="PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050722">
        <property type="entry name" value="Pyruvate:ferred/Flavod_OxRd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32154">
        <property type="entry name" value="PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32154:SF0">
        <property type="entry name" value="PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17147">
        <property type="entry name" value="PFOR_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01855">
        <property type="entry name" value="POR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="TK C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyruvate flavodoxin/ferredoxin oxidoreductase pyrimidine binding" evidence="6">
        <location>
            <begin position="30"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="Pyruvate:ferredoxin oxidoreductase core" evidence="7">
        <location>
            <begin position="275"/>
            <end position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00048893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="402" mass="44820" checksum="F5CF22A089D657FA" modified="2008-05-20" version="1">MTAQALVPREKKIAQKRIALTGNHAVALAVKMCRPEVIAAYPITPQTPVVEKLAEYVNNGELDAEYIPVESEHSAMSASIGASAMGARTFTETSSQGLMHMYENLPIAVGLRLPIVMGVAARTISAPINVWGDYSDVMTMRELGWIIYIVQNAQEAFDTIIQAYRVAEDQRVHLPAVVAYDGFWTSHVLQPLDVPEDEEDVMRFAPITRSWVKLDVDNPLQLGAVGTPEWYWEVRWQAAEALRESLKVVEEVDREFGKWFGRSYGLFHTYRLEDAELAIVTYGSIYGLVKKVVDRLREEGVKAGALRLRVIRPWPGHQLRKALDRVDKVFVIDRAINHGGPLIGPMATEVAATLQRPVYNALATIGMRAIDSDMIYEAALKVAKGLWAPNQTYTIGLRGGYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB41</accession>
    <name>B1YB41_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">VWA containing CoxE family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1824</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351160.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB41"/>
    <dbReference type="STRING" id="444157.Tneu_1824"/>
    <dbReference type="GeneID" id="6166251"/>
    <dbReference type="KEGG" id="tne:Tneu_1824"/>
    <dbReference type="eggNOG" id="arCOG00442">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_620588_0_0_2"/>
    <dbReference type="OrthoDB" id="64524at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040322">
        <property type="entry name" value="TROVE2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14202">
        <property type="entry name" value="60 KDA RIBONUCLEOPROTEIN SSA/RO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14202:SF0">
        <property type="entry name" value="RNA-BINDING PROTEIN RO60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="426" mass="48462" checksum="0C7FB02C85B184E7" modified="2008-05-20" version="1">MTGALLNVDYNDELTRLRVHEIVRYLQRVGIPIKLAKIPNEVIADSFYVHYRKPILRESPGPGEALWYQFLRTYLSSEIYQEVFQISRYNYQVSRSASVKLLRAYNSLMTRIERGAVGGVDQQDPSAQQQLRQEIQSLLRFYMGNIKNLEKLRRSITKTLGNEVGKEAAELLFDIDIDPYRARLAKILETFVETLSAIQEELEEGAQEERKGVISGIARLRAFEDLQRATPLSKAIYLHSRALFGYKIATKSLSIYDTSLDTREKIYLLIDKSGSMFYTLYDGVAMDMTQKITWATALAVALMKRSRRTVLRFFDQMVYPPIYSTKEIIKSLLRVLPLGGTDITAAVHTAIRDAKQQGLHSYKLVIVTDGEDDMVHPEVLKAAKAAFREVKAVLIGGNNEVIEENLPTIKISTINIESLRKTLKSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB42</accession>
    <name>B1YB42_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Signal-transduction protein with CBS domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1825</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351161.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB42"/>
    <dbReference type="STRING" id="444157.Tneu_1825"/>
    <dbReference type="GeneID" id="6164532"/>
    <dbReference type="KEGG" id="tne:Tneu_1825"/>
    <dbReference type="eggNOG" id="arCOG00631">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040681_12_1_2"/>
    <dbReference type="OrthoDB" id="8919at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd09836">
        <property type="entry name" value="CBS_pair_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="entry name" value="CBS-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051257">
        <property type="entry name" value="Diverse_CBS-Domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080:SF2">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="CBS-domain pair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="7"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="72"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="139" mass="15225" checksum="9A6A7E742BAB4855" modified="2008-05-20" version="1">MNCGDIAAKPPVVVTPDATVEEAAEKMITHRVGLLVVVDKETRRKPIGVVSERDLLKAVAGKMPPTTTVDKVGTMGNYVYVYADDPITVAARKMKQNNVRHVVVLDRGGELYGVISIRDLIGERKVLEILAKEWAPSME</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB64</accession>
    <name>B1YB64_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Peptidase M50</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Tneu_0242</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M50B family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349616.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB64"/>
    <dbReference type="STRING" id="444157.Tneu_0242"/>
    <dbReference type="GeneID" id="6166003"/>
    <dbReference type="KEGG" id="tne:Tneu_0242"/>
    <dbReference type="eggNOG" id="arCOG00614">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_099718_0_0_2"/>
    <dbReference type="OrthoDB" id="86131at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06158">
        <property type="entry name" value="S2P-M50_like_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052348">
        <property type="entry name" value="Metallopeptidase_M50B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008915">
        <property type="entry name" value="Peptidase_M50"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044537">
        <property type="entry name" value="Rip2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35864">
        <property type="entry name" value="ZINC METALLOPROTEASE MJ0611-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35864:SF1">
        <property type="entry name" value="ZINC METALLOPROTEASE YWHC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02163">
        <property type="entry name" value="Peptidase_M50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="12 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="5" id="KW-0645">Protease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="45"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="83"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="121"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="150"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="182"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase M50" evidence="14">
        <location>
            <begin position="148"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB39195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="201" mass="21909" checksum="2DE1E97CAF46461A" modified="2008-05-20" version="1">MYHELRKRELVDLAVAFATLTVGFSIAIAGGGIVGGINWRRVLEAVPIVAFVLLFAFVGHEMAHRQVARRLGYIAMFQADYNLLPLAVILPLLFGVVFAAPGAVVVLPFRPPGGGNERRDLFYIAAAGPITNIAFGAAGLAIATYTNSPIWWFFAYTNAWLAFFNLLPIPPLDGNKMLRTNLPMWLAITAVAGLLVAKLWQ</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB67</accession>
    <name>RNH2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribonuclease HII</fullName>
            <shortName evidence="1">RNase HII</shortName>
            <ecNumber evidence="1">3.1.26.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rnhB</name>
        <name type="ordered locus">Tneu_0245</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Endonucleolytic cleavage to 5'-phosphomonoester.</text>
            <dbReference type="EC" id="3.1.26.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Manganese or magnesium. Binds 1 divalent metal ion per monomer in the absence of substrate. May bind a second metal ion after substrate binding.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RNase HII family.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.4" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349619.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB67"/>
    <dbReference type="SMR" id="B1YB67"/>
    <dbReference type="STRING" id="444157.Tneu_0245"/>
    <dbReference type="GeneID" id="6166086"/>
    <dbReference type="KEGG" id="tne:Tneu_0245"/>
    <dbReference type="eggNOG" id="arCOG04121">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036532_0_4_2"/>
    <dbReference type="OrthoDB" id="33866at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032299">
        <property type="term" value="C:ribonuclease H2 complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043137">
        <property type="term" value="P:DNA replication, removal of RNA primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07180">
        <property type="entry name" value="RNase_HII_archaea_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.460">
        <property type="entry name" value="Ribonuclease hii. Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00052_A">
        <property type="entry name" value="RNase_HII_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004649">
        <property type="entry name" value="RNase_H2_suA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001352">
        <property type="entry name" value="RNase_HII/HIII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024567">
        <property type="entry name" value="RNase_HII/HIII_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020787">
        <property type="entry name" value="RNase_HII_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023160">
        <property type="entry name" value="RNase_HII_hlx-loop-hlx_cap_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00729">
        <property type="entry name" value="ribonuclease HII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10954:SF23">
        <property type="entry name" value="RIBONUCLEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10954">
        <property type="entry name" value="RIBONUCLEASE H2 SUBUNIT A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01351">
        <property type="entry name" value="RNase_HII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51975">
        <property type="entry name" value="RNASE_H_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0255">Endonuclease</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0464">Manganese</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0540">Nuclease</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000117692" description="Ribonuclease HII">
        <location>
            <begin position="1"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="domain" description="RNase H type-2" evidence="2">
        <location>
            <begin position="3"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01319"/>
        </source>
    </evidence>
    <sequence length="198" mass="21939" checksum="43E7DCECBFEFA969" modified="2008-05-20" version="1">MSFLEGGVDEAGRGPVVGPMVIAVVVGDGGVLARLGVRDSKRLSPERRERLYQLILEAADCVNYVVVEPAVVDTYVWRGLLNALELDYTAKLIELCPADVYYVDSPDVDPRRYGSALEFITGRRVVAMHKGESVPQVAAASIVAKVVRDRLVALLKKEVGDFGSGYPSDPRTREWLKWGRLPPECVRWSWRTLRGESP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB85</accession>
    <name>B1YB85_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC-3 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0263</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC-3 integral membrane protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349637.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB85"/>
    <dbReference type="STRING" id="444157.Tneu_0263"/>
    <dbReference type="GeneID" id="6165600"/>
    <dbReference type="KEGG" id="tne:Tneu_0263"/>
    <dbReference type="eggNOG" id="arCOG01006">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_904946_0_0_2"/>
    <dbReference type="OrthoDB" id="29099at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="entry name" value="ABC transporter involved in vitamin B12 uptake, BtuC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001626">
        <property type="entry name" value="ABC_TroCD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30477:SF21">
        <property type="entry name" value="ABC-3 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30477">
        <property type="entry name" value="ABC-TRANSPORTER METAL-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00950">
        <property type="entry name" value="ABC-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="ABC transporter involved in vitamin B12 uptake, BtuC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="61"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="85"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="114"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="211"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="247"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="270"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="291" mass="30915" checksum="A0E0592DC9F755C0" modified="2008-05-20" version="1">MPILIEAAAAALAAGALLHAYFYAPLLFWPLASLLLSSVVLAAYSPLAVSRRMTFLAHAQGHSILTAALAAAVPTALLGQTPASPAFYLFTVLFVMLLNFAVLATERLGYRKDVATGVVMSFQLTAAIALLYLIRKLYATTLDPLALITGEYVLIGPGDLQTQLPMLAAALVFPALYGTRYLYAAVDELFAESIGMKTRRLDHLFLTSMSLAVSATVYTLGSLMPAVLLVLPGAIAARYSNKLTEQIPLAVSLAVAAAAAAHFIYTAVPWLWPSAALGAVMLALLLAKRYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBE5</accession>
    <name>B1YBE5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0325</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349697.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBE5"/>
    <dbReference type="STRING" id="444157.Tneu_0325"/>
    <dbReference type="GeneID" id="6165305"/>
    <dbReference type="KEGG" id="tne:Tneu_0325"/>
    <dbReference type="eggNOG" id="arCOG00961">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_187361_0_0_2"/>
    <dbReference type="OrthoDB" id="23833at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="entry name" value="Alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32479">
        <property type="entry name" value="GLYCOLATE OXIDASE IRON-SULFUR SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32479:SF17">
        <property type="entry name" value="GLYCOLATE OXIDASE IRON-SULFUR SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46548">
        <property type="entry name" value="alpha-helical ferredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="49"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="91" mass="10151" checksum="ABF55C5EF2390447" modified="2008-05-20" version="1">MEPRAEATRCVHCGFCEMVCPTYRLYRMRHYGPRGRLHIIANSDGLLSGEAYRSVMTCLACGACDTQCPAGIKIAEVIRGFKAELVKRALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBE9</accession>
    <name>B1YBE9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0329</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349701.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBE9"/>
    <dbReference type="STRING" id="444157.Tneu_0329"/>
    <dbReference type="GeneID" id="6165253"/>
    <dbReference type="KEGG" id="tne:Tneu_0329"/>
    <dbReference type="eggNOG" id="arCOG05963">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1406013_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="189" mass="20926" checksum="2AB2CD8828A4B9B4" modified="2008-05-20" version="1">MDATRAILEESLAVSRKILRRELRKALGLYYAAWGTYPMAVVVLYYVVEKLVAGAPESAVALSAAVPYIVLTGRIFATFFKAMRLPSRRRKGGIAWSIMMLAYFAVLLFAMAFIKTLAFATAAAYAASVALLTYLLFRSNATEPRWYDHLALISFSALLPLGVYVVALYYVIGIIWVYAGVKSLLDAME</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBF8</accession>
    <name>B1YBF8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Acetate--CoA ligase</fullName>
            <ecNumber evidence="7">6.2.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1843</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Plays a role in the autotrophic CO(2) fixation pathway. Activates 3-hydroxypropionate to its CoA ester. Can also activate propionate, and to a lesser extent acrylate, acetate and butyrate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>3-hydroxypropanoate + ATP + CoA = 3-hydroxypropanoyl-CoA + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:26534"/>
            <dbReference type="ChEBI" id="CHEBI:16510"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58528"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.2.1.36"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATP-dependent AMP-binding enzyme family.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.1" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351179.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBF8"/>
    <dbReference type="STRING" id="444157.Tneu_1843"/>
    <dbReference type="GeneID" id="6164770"/>
    <dbReference type="KEGG" id="tne:Tneu_1843"/>
    <dbReference type="eggNOG" id="arCOG04201">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_3_6_2"/>
    <dbReference type="OrthoDB" id="371752at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043955">
        <property type="term" value="F:3-hydroxypropionyl-CoA synthetase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003987">
        <property type="term" value="F:acetate-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016208">
        <property type="term" value="F:AMP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019427">
        <property type="term" value="P:acetyl-CoA biosynthetic process from acetate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043427">
        <property type="term" value="P:carbon fixation by 3-hydroxypropionate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd05966">
        <property type="entry name" value="ACS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.12780:FF:000001">
        <property type="entry name" value="Acetyl-coenzyme A synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="entry name" value="N-terminal domain of ligase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011904">
        <property type="entry name" value="Ac_CoA_lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032387">
        <property type="entry name" value="ACAS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_synth/lig_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02188">
        <property type="entry name" value="Ac_CoA_lig_AcsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001208">
        <property type="entry name" value="PRK00174.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24095">
        <property type="entry name" value="ACETYL-COENZYME A SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24095:SF232">
        <property type="entry name" value="ACETYL-COENZYME A SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16177">
        <property type="entry name" value="ACAS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56801">
        <property type="entry name" value="Acetyl-CoA synthetase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acetyl-coenzyme A synthetase N-terminal" evidence="10">
        <location>
            <begin position="29"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-dependent synthetase/ligase" evidence="8">
        <location>
            <begin position="94"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding enzyme C-terminal" evidence="9">
        <location>
            <begin position="544"/>
            <end position="622"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00051214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00059013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="NCBIfam" id="TIGR02188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF16177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="666" mass="76050" checksum="36B4705EF23394DF" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBG2</accession>
    <name>B1YBG2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Molybdopterin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1847</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351183.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBG2"/>
    <dbReference type="STRING" id="444157.Tneu_1847"/>
    <dbReference type="GeneID" id="6164779"/>
    <dbReference type="KEGG" id="tne:Tneu_1847"/>
    <dbReference type="eggNOG" id="arCOG01495">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000422_13_3_2"/>
    <dbReference type="OrthoDB" id="23466at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.740">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.228.10">
        <property type="entry name" value="Dimethylsulfoxide Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050612">
        <property type="entry name" value="Prok_Mopterin_Oxidored"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43742:SF9">
        <property type="entry name" value="TETRATHIONATE REDUCTASE SUBUNIT A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43742">
        <property type="entry name" value="TRIMETHYLAMINE-N-OXIDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="ADC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53706">
        <property type="entry name" value="Formate dehydrogenase/DMSO reductase, domains 1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="9">
        <location>
            <begin position="41"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="1058" mass="117299" checksum="BEB29C75244445CF" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBG3</accession>
    <name>B1YBG3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1848</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351184.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBG3"/>
    <dbReference type="STRING" id="444157.Tneu_1848"/>
    <dbReference type="GeneID" id="6164790"/>
    <dbReference type="KEGG" id="tne:Tneu_1848"/>
    <dbReference type="eggNOG" id="arCOG01500">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043374_1_1_2"/>
    <dbReference type="OrthoDB" id="2837at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd10551">
        <property type="entry name" value="PsrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050954">
        <property type="entry name" value="ET_IronSulfur_Cluster-Binding"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43177">
        <property type="entry name" value="PROTEIN NRFC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43177:SF3">
        <property type="entry name" value="PROTEIN NRFC HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13247">
        <property type="entry name" value="Fer4_11"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12800">
        <property type="entry name" value="Fer4_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="3"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="60"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="92"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="232" mass="25904" checksum="3869F5D34B489D88" modified="2008-05-20" version="1">MRPVFVIDINKCVGCMACVAACSVENGVLFIAAKDPSKYLPIHSKTRTVVVWKEEEKEKPARRFVPYLCNHCEKTPCLEVCPTQATYKTKEGIVLIDKDKCIGCRYCIMACPYGMRYTPPAMETEELMHLDFMKDAEAGVNYGGVMFQPPVSNKWAVKIRTVDKCTFCYHRKTSDDKLWTPACVEVCPTKARSFGDLDNPNDPVADLVRRGIAKPIAPSKGTGGLVYYVGEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBI5</accession>
    <name>B1YBI5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellar biosynthesis protein FlaG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1872</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351206.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBI5"/>
    <dbReference type="STRING" id="444157.Tneu_1872"/>
    <dbReference type="GeneID" id="6165057"/>
    <dbReference type="KEGG" id="tne:Tneu_1872"/>
    <dbReference type="eggNOG" id="arCOG03871">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_147148_0_0_2"/>
    <dbReference type="OrthoDB" id="27471at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="156" mass="16167" checksum="CFB05FC825BBC0C6" modified="2008-05-20" version="1">MNKVKGLEPIVAAVLLIVVAVIGAVLVYLWFAGYVTKATSQAEQMAASEKLKVEAASLSSSAASGVLYIRNLGGDNVTLSTIYVLKPGTLSPLCLASGITVYKPGSTTATATTLYPGQLQQVQFSIPTGCVTAGYDYVIKIVTLKGTEFAVTVTAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBK3</accession>
    <name>B1YBK3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transcriptional regulator</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351224.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBK3"/>
    <dbReference type="GeneID" id="6165136"/>
    <dbReference type="KEGG" id="tne:Tneu_1890"/>
    <dbReference type="eggNOG" id="arCOG04189">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_182708_0_0_2"/>
    <dbReference type="OrthoDB" id="6815at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="90" mass="9829" checksum="733B8E223561760D" modified="2008-05-20" version="1">MHRDKAVGLGLVAAGIVGIVLYGWLVFFSPWQLFILQLTAFAAVAAVLGILAWVGYALATTPPPKPIEEIEKEVQKALEEIEKQLKESPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBM8</accession>
    <name>B1YBM8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1915</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351249.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBM8"/>
    <dbReference type="STRING" id="444157.Tneu_1915"/>
    <dbReference type="GeneID" id="6166281"/>
    <dbReference type="KEGG" id="tne:Tneu_1915"/>
    <dbReference type="eggNOG" id="arCOG05537">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_619143_0_0_2"/>
    <dbReference type="OrthoDB" id="24927at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="442" mass="48892" checksum="30FB8A015C054B87" modified="2008-05-20" version="1">MGWGITRRRLLMLGVAGAVAAVGGWQLLGVSENAARPQTRSYWFERTSEFASNDDVVELKFVDEFDRPVDFNALLVWEPDGVVEEVAVKDGVLRLDKRRVKRQAESWVEEQLRRDNPTSTEHALFTILPTAPAEPLFYTDVIERPALRSRVYRVRGAARRSTGHRFATCPEAKVFYISDVNLTDPDYVPAVALKDSSSKAFGEDIWFGYKVDGSALKLNAYGALSLKWGTELRITGEYSWSTGNLISQGSGGYAPADGQSAAVMFYSSIWRVIGYDVYDIYTCNVVDTRASLYMLNLAFENGNIALRSVGYIPKMPTSISPAETRTYTGIDGKWGDYNTLWYLEIMKNEPLLDVGGTLGVGLPVGDLIANKVPSTVASLIKKLHAGFNFQAYGAVANYIAKVSTDAAPGAKYALRVYRAAFVHYLKDYVFKPLVTIAEVVDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="91" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBP5</accession>
    <name>B1YBP5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Tyrosine--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Tyrosyl-tRNA synthetase</fullName>
            <shortName evidence="8">TyrRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">tyrS</name>
        <name evidence="10" type="ordered locus">Tneu_1932</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 8">
            <text>tRNA(Tyr) + L-tyrosine + ATP = L-tyrosyl-tRNA(Tyr) + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10220"/>
            <dbReference type="Rhea" id="RHEA-COMP:9706"/>
            <dbReference type="Rhea" id="RHEA-COMP:9707"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78536"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 4 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.1" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351266.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBP5"/>
    <dbReference type="STRING" id="444157.Tneu_1932"/>
    <dbReference type="GeneID" id="6164990"/>
    <dbReference type="KEGG" id="tne:Tneu_1932"/>
    <dbReference type="eggNOG" id="arCOG01886">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035267_1_1_2"/>
    <dbReference type="OrthoDB" id="8389at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004831">
        <property type="term" value="F:tyrosine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006437">
        <property type="term" value="P:tyrosyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02009">
        <property type="entry name" value="Tyr_tRNA_synth_type4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002305">
        <property type="entry name" value="aa-tRNA-synth_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023678">
        <property type="entry name" value="Tyr-tRNA-ligase_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023617">
        <property type="entry name" value="Tyr-tRNA-ligase_arc/euk-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050489">
        <property type="entry name" value="Tyr-tRNA_synthase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006330">
        <property type="entry name" value="PRK08560.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46264:SF4">
        <property type="entry name" value="TYROSINE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46264">
        <property type="entry name" value="TYROSINE-TRNA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00579">
        <property type="entry name" value="tRNA-synt_1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006588">
        <property type="entry name" value="TyrRS_arch_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="246"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00048248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="372" mass="42453" checksum="73DCB9F98E237E73" modified="2008-05-20" version="1">MDVEERLSLVLRYPTEEVITVEELRELFQAGYRLNHYIGFEISGFIHIGTGIVSMSKVVDLQRAGVRTQIFLADIHSWLNNKLGGDLEVIRRVAVTYYVETFKRIIESLGGDPDATRFILGSDLYHHNDEYWLLLMDITRHLTLSQVRHSLTILGRKMGESIPLAYLVYPPLQVADVFALEAHIPHGGIDQRRAHVLARDVADKVRFYPLKVDGKRVKPVALHHKLLPALNITSKPTSREELSELKMSKSVPQSAIFVHDSPEEIRQKIARAYCPPRDTEYNPVLELLRISAFREERRAPLVIKRPEKYGGDLEVWRYEELESLYREGKIHPADLKAAAAEALVAALEPVYKYFQGPGAKLLDEMKSIAITR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBQ3</accession>
    <name>B1YBQ3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Cobyrinate a,c-diamide synthase</fullName>
            <ecNumber evidence="7">6.3.5.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Cobyrinic acid a,c-diamide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">cbiA</name>
        <name evidence="10" type="ordered locus">Tneu_0337</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>cob(II)yrinate + 2 L-glutamine + 2 ATP + 2 H2O = cob(II)yrinate a,c diamide + 2 L-glutamate + 2 ADP + 2 phosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:26289"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58537"/>
            <dbReference type="ChEBI" id="CHEBI:58894"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cofactor biosynthesis; adenosylcobalamin biosynthesis; cob(II)yrinate a,c-diamide from sirohydrochlorin (anaerobic route): step 10/10.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">Comprises of two domains. The C-terminal domain contains the binding site for glutamine and catalyzes the hydrolysis of this substrate to glutamate and ammonia. The N-terminal domain is anticipated to bind ATP and cobyrinate and catalyzes the ultimate synthesis of the diamide product. The ammonia produced via the glutaminase domain is probably translocated to the adjacent domain via a molecular tunnel, where it reacts with an activated intermediate.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="7">The a and c carboxylates of cobyrinate are activated for nucleophilic attack via formation of a phosphorylated intermediate by ATP. CbiA catalyzes first the amidation of the c-carboxylate, and then that of the a-carboxylate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the CobB/CbiA family.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.11" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349708.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBQ3"/>
    <dbReference type="STRING" id="444157.Tneu_0337"/>
    <dbReference type="GeneID" id="6165155"/>
    <dbReference type="KEGG" id="tne:Tneu_0337"/>
    <dbReference type="eggNOG" id="arCOG00106">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022752_2_0_2"/>
    <dbReference type="OrthoDB" id="8896at2157"/>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00231"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042242">
        <property type="term" value="F:cobyrinic acid a,c-diamide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00027">
        <property type="entry name" value="CobB_CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004484">
        <property type="entry name" value="CbiA/CobB_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011698">
        <property type="entry name" value="GATase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00379">
        <property type="entry name" value="cobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002204">
        <property type="entry name" value="PRK01077.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43873">
        <property type="entry name" value="COBYRINATE A,C-DIAMIDE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43873:SF1">
        <property type="entry name" value="COBYRINATE A,C-DIAMIDE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07685">
        <property type="entry name" value="GATase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="Class I glutamine amidotransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51274">
        <property type="entry name" value="GATASE_COBBQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="2 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobQ/CobB/MinD/ParA nucleotide binding" evidence="8">
        <location>
            <begin position="5"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="domain" description="CobB/CobQ-like glutamine amidotransferase" evidence="9">
        <location>
            <begin position="248"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="329"/>
        </location>
    </feature>
    <feature type="site" description="Increases nucleophilicity of active site Cys" evidence="7">
        <location>
            <position position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="447" mass="48512" checksum="A6249D290D16D7AC" modified="2008-05-20" version="1">MIPRVVISSFRGMSGKTIISLALIYGLFRQGLRVAPFKVGPDYIDPSYHAAVAGRPSRNLDVVLMGERGVVERFVKFSRGADVAVVEGVLGLYDSFDGVSELGSTAQVAKLLKAPVVLVLNGERVNRTLRAVVRGLRQFDPEVKIPGVILTNVTRSQAEKLKKSLPEEGVEVLGAVPKSEKLAEVFSYRHLGLTPVGERGDVPNIVEALVKYVLPNIDLDAVVALAKSAGDLPYDADEGGETPRGTCRVGIVFDRAFTFYYPEVFEEAKSLGEVVFLDSLNMQELPPVDVVFVGGGFPETSAEELERNRAFRSALLRYVERGGKLYAECGGLMYLTSSIVVGGSEYEMVGAVDAVTVMLKRPVGKGYAWGVVEGRTPVAPVGTKLVGHEFHYSKIVLRERVETAIRLERGVGIGGGIDGVVKGNMHAQYLHIHPYTYSVLRALCRST</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBS0</accession>
    <name>B1YBS0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0354</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349724.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBS0"/>
    <dbReference type="STRING" id="444157.Tneu_0354"/>
    <dbReference type="GeneID" id="6166314"/>
    <dbReference type="KEGG" id="tne:Tneu_0354"/>
    <dbReference type="eggNOG" id="arCOG01500">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043374_1_1_2"/>
    <dbReference type="OrthoDB" id="2837at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050954">
        <property type="entry name" value="ET_IronSulfur_Cluster-Binding"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43177">
        <property type="entry name" value="PROTEIN NRFC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43177:SF3">
        <property type="entry name" value="PROTEIN NRFC HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13247">
        <property type="entry name" value="Fer4_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="191"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="4"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="54"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="86"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="221" mass="24158" checksum="D18109CC1A6DEC3E" modified="2008-05-20" version="1">MTRLVLLWDRSRCVACGACVVACNAANYNSSGEMNKMWGWLKSNIKMVEVKSGPKPTLYLVYCQHCDKPYCVATCPTNALYKDRDGLVKLRESSCIGCKYCLAACPYGAVWWDEKNNKPAKCVGSECLRRVSEGLRPVCAEVCPSGALVFGDIESPSSEVSQRFTKGEYIKPPEDEGTKAVIETRSTLKSLTTAGGAALAGALAVLGLAAWRRERVQEKKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBW8</accession>
    <name>B1YBW8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Nickel-iron dehydrogenase small subunit domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Tneu_0404</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell envelope</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349772.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBW8"/>
    <dbReference type="STRING" id="444157.Tneu_0404"/>
    <dbReference type="GeneID" id="6166171"/>
    <dbReference type="KEGG" id="tne:Tneu_0404"/>
    <dbReference type="eggNOG" id="arCOG02474">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046107_1_2_2"/>
    <dbReference type="OrthoDB" id="37913at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044569">
        <property type="term" value="C:[Ni-Fe] hydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009375">
        <property type="term" value="C:ferredoxin hydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051538">
        <property type="term" value="F:3 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008901">
        <property type="term" value="F:ferredoxin hydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009061">
        <property type="term" value="P:anaerobic respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.480.10">
        <property type="entry name" value="Cytochrome-c3 hydrogenase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.700">
        <property type="entry name" value="NADH:ubiquinone oxidoreductase-like, 20kDa subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027394">
        <property type="entry name" value="Cytochrome-c3_hydrogenase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006137">
        <property type="entry name" value="NADH_UbQ_OxRdtase-like_20kDa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037148">
        <property type="entry name" value="NiFe-Hase_small_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037024">
        <property type="entry name" value="NiFe_Hase_small_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001821">
        <property type="entry name" value="NiFe_hydrogenase_ssu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30013:SF7">
        <property type="entry name" value="HYDROGENASE-2 SMALL CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30013">
        <property type="entry name" value="NIFE / NIFESE HYDROGENASE SMALL SUBUNIT FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14720">
        <property type="entry name" value="NiFe_hyd_SSU_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01058">
        <property type="entry name" value="Oxidored_q6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000310">
        <property type="entry name" value="NiFe_hyd_ssu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56770">
        <property type="entry name" value="HydA/Nqo6-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 12" id="KW-0003">3Fe-4S</keyword>
    <keyword evidence="5 12" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9 12" id="KW-0408">Iron</keyword>
    <keyword evidence="10 12" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <feature type="domain" description="NADH:ubiquinone oxidoreductase-like 20kDa subunit" evidence="13">
        <location>
            <begin position="49"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome-c3 hydrogenase C-terminal" evidence="14">
        <location>
            <begin position="315"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="272"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="320"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="323"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="345"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="351"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="379"/>
        </location>
        <ligand>
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="382"/>
        </location>
        <ligand>
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000310-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF14720"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB39352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="438" mass="46654" checksum="3976B69D3F033BBF" modified="2008-05-20" version="1">MKITRRDVLRAGSLAAALSALNWPALVKAAGEAVKDGLVNIVWFEAQDCAGNTTAVIQATDPSLLDVLLGTTPLVGPGTVRLIFHETVMPQWGTYHVKEATDVADHKILENYLQTQPPPGDAMKILEEIAEGKYGPYVLVLEGSFPQEYGISGTNIEQKGGYYCLVGHRTCTDWAKLLFKNALAVVAVGNCAAYGGLVANKVLEPPPGFKFPTWSPSPTGAVGMFDDPVRGIKGMIHIDYFQPEVEPFRKYIDEGGVPDFKTMKPAVAVPGCPANGNGILRTLALLTLVAAGLLKPDVLERKAFLDQYARPRFIFENTVHEQCPRAASYAAGDLRPYPGAGDYKCLFGVGCKGPISNCPWNKVGWVSGIGGPTRTGGVCIGCTMPGFTDAFEPFYAPLNAPRLPTTETLGVALGGAALLGVAGAYLASKAAKPKEEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBX3</accession>
    <name>B1YBX3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349777.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBX3"/>
    <dbReference type="STRING" id="444157.Tneu_0409"/>
    <dbReference type="GeneID" id="6166167"/>
    <dbReference type="KEGG" id="tne:Tneu_0409"/>
    <dbReference type="eggNOG" id="arCOG07420">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2519902_0_0_2"/>
    <dbReference type="OrthoDB" id="376242at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="85" mass="9444" checksum="40CB8E0FFEF6BD0F" modified="2008-05-20" version="1">MSEFRELGRALGLLKRELLGPVEEALKPVEDLASFLTRPVEEAFREAVGDVLYRQLTNLGEARRLEAGVDPAKLLEAVKRQLGVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBY8</accession>
    <name>B1YBY8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0424</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate metabolism; tricarboxylic acid cycle.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349792.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBY8"/>
    <dbReference type="STRING" id="444157.Tneu_0424"/>
    <dbReference type="GeneID" id="6166237"/>
    <dbReference type="KEGG" id="tne:Tneu_0424"/>
    <dbReference type="eggNOG" id="arCOG00962">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044838_5_2_2"/>
    <dbReference type="OrthoDB" id="144910at2157"/>
    <dbReference type="BRENDA" id="1.3.5.1">
        <property type="organism ID" value="6328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050573">
        <property type="entry name" value="SDH/FRD_Iron-Sulfur"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004489">
        <property type="entry name" value="Succ_DH/fum_Rdtase_Fe-S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025192">
        <property type="entry name" value="Succ_DH/fum_Rdtase_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00384">
        <property type="entry name" value="dhsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11921:SF29">
        <property type="entry name" value="SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11921">
        <property type="entry name" value="SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13085">
        <property type="entry name" value="Fer2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="2Fe-2S ferredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="100" mass="11165" checksum="B206FA52C5DC4EDA" modified="2008-05-20" version="1">MRVKVHVKRGREGAQYYQTYEVEAPESTTVLDLLLSIRETLDGSLSMRYACRMGVCGACTMVINGVPRLACAVKISDLKTDEIFVEPLRGKKVIKDLVTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBZ1</accession>
    <name>B1YBZ1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0427</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349795.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBZ1"/>
    <dbReference type="GeneID" id="6166062"/>
    <dbReference type="KEGG" id="tne:Tneu_0427"/>
    <dbReference type="eggNOG" id="arCOG05714">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1521930_0_0_2"/>
    <dbReference type="OrthoDB" id="29131at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="154" mass="16622" checksum="6B76D33A2733F15F" modified="2008-05-20" version="1">MDILRAITGALLPRREPPLLRKLGEGAFPIYGAALRLLPRIPPEAAADLRLLGVIDGAGRATPLGAHAARCAWIEDDGALGAVPLVLCRVRGWQIEEAHYCRRLRARPDRWLARAVELAGPHLLSCLPYGADAGALADLTARRIPRSWASSASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC00</accession>
    <name>B1YC00_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1939</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351273.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC00"/>
    <dbReference type="STRING" id="444157.Tneu_1939"/>
    <dbReference type="GeneID" id="6164680"/>
    <dbReference type="KEGG" id="tne:Tneu_1939"/>
    <dbReference type="eggNOG" id="arCOG05436">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1623518_0_0_2"/>
    <dbReference type="OrthoDB" id="27566at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="163" mass="17570" checksum="1B100C8DF93A6F29" modified="2008-05-20" version="1">MCEVTAEGDALVFSAPELELAMAYLAVRTLAERVEFSGGSLRVSPALPEVESSLKSLCNADVSTVLLDLKESLLHLGWLVEGTRDISRIRRSWRVGTAGFLTVEYDKGARTLSVATTQICMAEVLQRMGFKVAASRYLVEAARQVSSLAEALDLGEALSQASC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC05</accession>
    <name>B1YC05_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Alpha-L-glutamate ligase, RimK family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1944</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351278.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC05"/>
    <dbReference type="STRING" id="444157.Tneu_1944"/>
    <dbReference type="GeneID" id="6166313"/>
    <dbReference type="KEGG" id="tne:Tneu_1944"/>
    <dbReference type="eggNOG" id="arCOG01589">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054353_2_0_2"/>
    <dbReference type="OrthoDB" id="33241at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016879">
        <property type="term" value="F:ligase activity, forming carbon-nitrogen bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.470.20:FF:000058">
        <property type="entry name" value="Alpha-aminoadipate--LysW ligase LysX protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="entry name" value="ATP-grasp fold, A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013651">
        <property type="entry name" value="ATP-grasp_RimK-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004666">
        <property type="entry name" value="Rp_bS6_RimK/Lys_biosynth_LsyX"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00768">
        <property type="entry name" value="rimK_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21621:SF0">
        <property type="entry name" value="BETA-CITRYLGLUTAMATE SYNTHASE B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21621">
        <property type="entry name" value="RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08443">
        <property type="entry name" value="RimK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="8">
        <location>
            <begin position="109"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="292" mass="31985" checksum="82CD79A99C444C45" modified="2008-05-20" version="1">MDVAIVAESQTPDEPTRDIYFEVKRRGLSVRYIPIQRLSVKIAGGAATVESRRGRVDASVVVVRGLGYVIDSNTLMRRVAALKILEREGAVAINPVDALLSSRNKLETIYVLSKAGIPVPPTVATEDLYYGYVSVKDLGKVVVKPIQGSRGYGAMMFEDPEQAFQVMRTLLIAKNPLYIQKYVEKPNRDIRVIVVDGRPIGCMYRISNSWKTNIAQGAVGAPCKTTPELEEIAVKATEALGLVYSGVDIGEGAEGYVVFEVNASPDWRGFKQATGINPAVHLADYIQRAVRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC06</accession>
    <name>B1YC06_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1945</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351279.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC06"/>
    <dbReference type="STRING" id="444157.Tneu_1945"/>
    <dbReference type="GeneID" id="6164404"/>
    <dbReference type="KEGG" id="tne:Tneu_1945"/>
    <dbReference type="eggNOG" id="arCOG08093">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_202941_0_0_2"/>
    <dbReference type="OrthoDB" id="17225at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="64" mass="7187" checksum="5F0A64B4DAD182A8" modified="2008-05-20" version="1">MTRWILKCTVCGEERELEAGFNLTLLGGKVYLYCRRCRANREHLVLGCAEPDDLCPTVGADVID</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC36</accession>
    <name>METK_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">S-adenosylmethionine synthase</fullName>
            <shortName evidence="1">AdoMet synthase</shortName>
            <ecNumber evidence="1">2.5.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Methionine adenosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">mat</name>
        <name type="ordered locus">Tneu_1975</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the formation of S-adenosylmethionine from methionine and ATP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-methionine + ATP + H2O = S-adenosyl-L-methionine + phosphate + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21080"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.5.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; S-adenosyl-L-methionine biosynthesis; S-adenosyl-L-methionine from L-methionine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the AdoMet synthase 2 family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.6" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351309.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC36"/>
    <dbReference type="SMR" id="B1YC36"/>
    <dbReference type="STRING" id="444157.Tneu_1975"/>
    <dbReference type="GeneID" id="6164773"/>
    <dbReference type="KEGG" id="tne:Tneu_1975"/>
    <dbReference type="eggNOG" id="arCOG01678">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057642_0_0_2"/>
    <dbReference type="OrthoDB" id="204488at2157"/>
    <dbReference type="UniPathway" id="UPA00315">
        <property type="reaction ID" value="UER00080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004478">
        <property type="term" value="F:methionine adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006556">
        <property type="term" value="P:S-adenosylmethionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.280">
        <property type="entry name" value="S-adenosylmethionine synthetase, C-terminal domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00136">
        <property type="entry name" value="S_AdoMet_synth2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027790">
        <property type="entry name" value="AdoMet_synthase_2_family"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042544">
        <property type="entry name" value="AdoMet_synthase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002795">
        <property type="entry name" value="S-AdoMet_synthetase_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003365">
        <property type="entry name" value="PRK04439.1-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003366">
        <property type="entry name" value="PRK04439.1-5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36697">
        <property type="entry name" value="S-ADENOSYLMETHIONINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36697:SF1">
        <property type="entry name" value="S-ADENOSYLMETHIONINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01941">
        <property type="entry name" value="AdoMet_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0554">One-carbon metabolism</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000095956" description="S-adenosylmethionine synthase">
        <location>
            <begin position="1"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="137"/>
            <end position="142"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00136"/>
        </source>
    </evidence>
    <sequence length="402" mass="44257" checksum="9B6C1CF76D9595DD" modified="2008-05-20" version="1">MIVVEKVDKTPVAKRLVEIVERKGQGHPDYIADGISEWVSRYLSRYYLERFGVILHHNVDKTLVVGGQASPRFGGGEVLQPIYILVSGRATSEVRLKDGVVKIPLGPIIIQAARDWIKQHFRYLDPDAHTVIDYKIGQGSADLVGIYDLGVKSVPLANDTSVGVGYAPLTPLEQLVYKTERLLNSRDFKAKYPEVGEDVKVMGVRVGNEVKLTVAAAMISRLVKDKSHYLSVKDDVKKAVEDLASKVAPDYKIDVTINAADKPEHGIFYLTVTGTSAEHGDDGMTGRGNRANGLITPMRSMSLEAAAGKNPVSHVGKIYNVVAQRIADRIYAEAKDIVEVYVEIVSQIGKPINEPKILNIEIIKEGALTGEVKNEAEAIAREELEKITRVTEYILRGEVSLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="37" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC72</accession>
    <name>B1YC72_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0437</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349805.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC72"/>
    <dbReference type="STRING" id="444157.Tneu_0437"/>
    <dbReference type="GeneID" id="6165698"/>
    <dbReference type="KEGG" id="tne:Tneu_0437"/>
    <dbReference type="HOGENOM" id="CLU_768635_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="360" mass="40737" checksum="D3E00EA75671B13B" modified="2008-05-20" version="1">MERFLRDLREFTQMWNERIFERPMVYLPAWAGVDDVLAMSILSPPDYLRVPLEEALTKLRRPSAFLGYGGRLVERGEPLPDDVFVLDPPRGAAEAGLPSSAAGVALRVREAGRAAKPNRDLKRWVQALELYKAGRSNDPGFTYGRLRVSLVRSVLLDFAYVNPNLDASVFNFSFKAAKEAVREAHNALVNAAWDAASDIPWGDLPIVITEAALHMLTHPPDVAKRLKPKRRPWVGLLDVVFYISKGEKLFYEAARNVFDLIAREILKLRWNWRRAAAEVWVRGAPSAVEAVLIHTKLRPHVALELYLEMVGQPAQLYLFYSPDLRDEYIAITPLPLDAPRLRDGTYVLRYGRELASLAEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC83</accession>
    <name>B1YC83_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0449</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349816.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC83"/>
    <dbReference type="STRING" id="444157.Tneu_0449"/>
    <dbReference type="GeneID" id="6166063"/>
    <dbReference type="KEGG" id="tne:Tneu_0449"/>
    <dbReference type="eggNOG" id="arCOG03655">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_133857_1_0_2"/>
    <dbReference type="OrthoDB" id="23875at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058303">
        <property type="entry name" value="DUF7990"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25952">
        <property type="entry name" value="DUF7990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="82" mass="9571" checksum="CA2A5A4D7C79CAE2" modified="2008-05-20" version="1">MGFLDRIREVVEGLTVHGQSTSILKIKAQIDNLFMIITLGDMLGIPILPPYYSLRLVPYVFPNIQNWKRYMLRERDFTDLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCA3</accession>
    <name>B1YCA3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP1 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0469</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCA3"/>
    <dbReference type="STRING" id="444157.Tneu_0469"/>
    <dbReference type="KEGG" id="tne:Tneu_0469"/>
    <dbReference type="eggNOG" id="arCOG03712">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_118419_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010268">
        <property type="entry name" value="PaREP1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05942">
        <property type="entry name" value="PaREP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="190" mass="21086" checksum="F0C45DF41D4D9B23" modified="2008-05-20" version="1">MYLFVVSAEFLERPLPRPTEEGYVAARLLEALVEAKLALDFLQRGLVRNAAGKAFQAWRAYMAALMRLELERLKAAAKSEEERRWLESTAVPRLPTTKMKRLSQMLEEVGHAGVSPYTAVALDLHDYQYHGPDPDGALSKYTSREEAARDVVLLISELAKGVEGLRTRVGWTSELGEALAGLRRALGFGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCD4</accession>
    <name>B1YCD4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase beta domain protein region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0503</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCD4"/>
    <dbReference type="KEGG" id="tne:Tneu_0503"/>
    <dbReference type="eggNOG" id="arCOG01205">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1821091_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05403">
        <property type="entry name" value="NT_KNTase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="entry name" value="Beta Polymerase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37030">
        <property type="entry name" value="NUCLEOTIDYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37030:SF3">
        <property type="entry name" value="POLYMERASE NUCLEOTIDYL TRANSFERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="Nucleotidyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Polymerase nucleotidyl transferase" evidence="1">
        <location>
            <begin position="57"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="141" mass="16204" checksum="667426D575B741AF" modified="2008-05-20" version="1">MFGLRKNGEATLSTPPSRLDSRRWRSALRATFLSQTSGTAVGDPLSYLRNYRAVAELVKEVARWYDPEARVYVFGSAVRGDYTAASDIDILVVTNAVERKYDIMTEVYRRTEAPVEVHVTTPQQFQRWYRRFIPPNELAEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCG7</accession>
    <name>B1YCG7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">EamA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0537</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349900.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCG7"/>
    <dbReference type="STRING" id="444157.Tneu_0537"/>
    <dbReference type="GeneID" id="6165743"/>
    <dbReference type="KEGG" id="tne:Tneu_0537"/>
    <dbReference type="eggNOG" id="arCOG00272">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088145_0_0_2"/>
    <dbReference type="OrthoDB" id="29149at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037185">
        <property type="entry name" value="EmrE-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22911">
        <property type="entry name" value="ACYL-MALONYL CONDENSING ENZYME-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22911:SF137">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 35 MEMBER G2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103481">
        <property type="entry name" value="Multidrug resistance efflux transporter EmrE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="170"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="202"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="253"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="4"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="141"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="274" mass="27884" checksum="A62EDEEC89E22E92" modified="2008-05-20" version="1">MDLSGAAAALTAALIWALVIFLYKREMETAGAAAVNFSRLLYVAVLMWPVLLLGAPTPGLWAAAASGLITLVVGDSLYFYAIQRIGGSTAAPLAYTYVVIAQYLATLLGEVVSHWLAASAVLTVVGAALLAKGGSARLEPLGVAAALAAALMWSLGMAAVKLAAMGQAHPLVIAYIRAAAACAALGIYLAARRRVALVKSPLFAAASLLDLGLGSALFAYAVGAAGLAVATILVSTSPLITQLYARATGAERIGLRQTAGALSIFLAIYLALRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCH6</accession>
    <name>B1YCH6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0546</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349909.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCH6"/>
    <dbReference type="STRING" id="444157.Tneu_0546"/>
    <dbReference type="GeneID" id="6165671"/>
    <dbReference type="KEGG" id="tne:Tneu_0546"/>
    <dbReference type="eggNOG" id="arCOG00926">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="44250at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03219">
        <property type="entry name" value="ABC_Mj1267_LivG_branched"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051120">
        <property type="entry name" value="ABC_AA/LPS_Transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45772">
        <property type="entry name" value="CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45772:SF8">
        <property type="entry name" value="HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="4"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="242" mass="26438" checksum="E6F41406BC6FA874" modified="2008-05-20" version="1">MTLLKIENVVKRFGGLRAVDGVTLALERGEFLAVVGPNGSGKTTLLNLINGVYKPDGGKIYFEGRDITNMPPYMRARLGIARAFQVPRPFPELTVLENVVVGAIFAGGHDRSKAVEVAEEVLRYVGLYEKRESLAGRLTFNELRLLELARALAANPKLLLLDEVMAGLNPGEIDAIAHLVKKLAEERGVAAISLVEHRLRAVAKLAHRVVVMHQGRVIADGPPEKALSDPVVVEVYLGKPWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCH8</accession>
    <name>B1YCH8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_0548</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349911.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCH8"/>
    <dbReference type="STRING" id="444157.Tneu_0548"/>
    <dbReference type="GeneID" id="6165744"/>
    <dbReference type="KEGG" id="tne:Tneu_0548"/>
    <dbReference type="eggNOG" id="arCOG01270">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_2_0_2"/>
    <dbReference type="OrthoDB" id="43815at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06582">
        <property type="entry name" value="TM_PBP1_LivH_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052157">
        <property type="entry name" value="BCAA_transport_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11795:SF445">
        <property type="entry name" value="AMINO ACID ABC TRANSPORTER PERMEASE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11795">
        <property type="entry name" value="BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE PROTEIN LIVH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="40"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="64"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="95"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="136"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="185"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="266"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00037998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="291" mass="30599" checksum="03EF49D27BB74051" modified="2008-05-20" version="1">MDIAPFFITGLIIGSIYGLTTLGLSLIFGVLRVANVAHGSFIMIGAYMAFFAFTLWGWPPLATAAVAAAVGMGLGYLVYLVAIKPLKKAGELHTLVALFALGAALAEVARLLWGPDFVGYTWRLGSISLWGLEVEIGKLMGAFVALATAVALDLWLQRTFFGRAVRAVVQDPLGAQLVGVRVESVYAITAALGIGITTMGGVLLTLFIPVGINPYMGGPYTLIGFVVAVMGGLGSVMGAYVAGLVFGVIESVGYYLFSLAGFAEPSQMALFSAFVALLLLLLFRPTGLFRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCL2</accession>
    <name>B1YCL2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">AAA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0585</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349945.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCL2"/>
    <dbReference type="STRING" id="444157.Tneu_0585"/>
    <dbReference type="GeneID" id="6165615"/>
    <dbReference type="KEGG" id="tne:Tneu_0585"/>
    <dbReference type="eggNOG" id="arCOG00599">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079547_0_0_2"/>
    <dbReference type="OrthoDB" id="36110at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="202" mass="23606" checksum="6E910B65C0687EB8" modified="2008-05-20" version="1">MLPGGNLDDLAMEIFRTPRWEWLLEELVAPVKEDFDYIIVDSPNWLYSHFPMVVMFAPFYIALTRPGQPEREKTVLLLDRIFAMLKRHFSIPEPEKYAAVLLNQIRTTDVADIEREWKTLHKTLTERYPGITVIRNDKADHYYGKTPTPFYGFKLRNDLGAEEYQKSGHPLRSNDKAIKAQFTAYIESLMDFIKANAAYQVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCM0</accession>
    <name>B1YCM0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0594</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349953.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCM0"/>
    <dbReference type="STRING" id="444157.Tneu_0594"/>
    <dbReference type="GeneID" id="6165586"/>
    <dbReference type="KEGG" id="tne:Tneu_0594"/>
    <dbReference type="eggNOG" id="arCOG05502">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2230481_0_0_2"/>
    <dbReference type="OrthoDB" id="26423at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="105" mass="12118" checksum="7EB9EC259ED9D649" modified="2008-05-20" version="1">MRLRAPFLRLVLRNSYMELELKNVVVFAEAKRRGLYAEVYMDDVGYIYEKGGWQAYDGEGRPKEITPEEAEKLRKLAKRLSTLPRYHVLDLLIKALSSAKATAEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCM2</accession>
    <name>B1YCM2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0596</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349955.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCM2"/>
    <dbReference type="STRING" id="444157.Tneu_0596"/>
    <dbReference type="GeneID" id="6165576"/>
    <dbReference type="KEGG" id="tne:Tneu_0596"/>
    <dbReference type="eggNOG" id="arCOG05503">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_544710_0_0_2"/>
    <dbReference type="OrthoDB" id="27462at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="498" mass="53330" checksum="D22724B0D75E8D3C" modified="2008-05-20" version="1">MLGFLYLLINATAAAVPITAMPFIYTAPLGGCANFTAYVDPLAPWGIASVYGVSSSGSLVPPALDPYPTPKYLRGRLCGDYITVRVDRWRSLGPLIPVSVKGEDSAYLLQGVPYVVNGTAIVRIKSFTPPQVEGRYVYRVYSASAFGVYAEEYVVYGGAQIYAYGIANVTYISLSDDKPDYYVEVPTEGVKVDGVRGWTPDFQLYFAPGQRAVVGKPRIVVEQIAVPVVGECRGTATVVNPTERPLRVYVKLETGEEYALSFYYLPKNITTWRLRGAQAKTADGQDLPVYMVATDDGTPVSMCVVSGASYAVYVKAGESVYRYPAEASGGVVEAYTDLVKPKAVLDAPGFTAVVQPEVAKMGQNVTVKLFYNGTQVAEFVRRAAPVIAVNASSLFRTIRVVDALGTPIPAFTVAVGGLKFAGRDGVARVIPLDSRAAVEVNGVAYLVQLQTEVKIPTLTPHSFLKIAAAAATVGAAAAFIARKRGEEGPRPRGDLVEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCM5</accession>
    <name>B1YCM5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0599</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349958.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCM5"/>
    <dbReference type="STRING" id="444157.Tneu_0599"/>
    <dbReference type="GeneID" id="6165363"/>
    <dbReference type="KEGG" id="tne:Tneu_0599"/>
    <dbReference type="eggNOG" id="arCOG05505">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_172288_0_0_2"/>
    <dbReference type="OrthoDB" id="28823at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="11"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="111" mass="12154" checksum="044F2F553F33F9E1" modified="2008-05-20" version="1">MAEDFGIPEYAVEILAELRQLRQDVANLRREVAELSKKLAEPQARSTDADVALNALREAAEKLNAAAAAVVENASLIRAAVAEDRLRRDEACTAVLEKMLALQEALNKILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCR5</accession>
    <name>B1YCR5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">EamA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0639</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349998.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCR5"/>
    <dbReference type="STRING" id="444157.Tneu_0639"/>
    <dbReference type="GeneID" id="6165375"/>
    <dbReference type="KEGG" id="tne:Tneu_0639"/>
    <dbReference type="eggNOG" id="arCOG00272">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1029031_0_0_2"/>
    <dbReference type="OrthoDB" id="29208at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037185">
        <property type="entry name" value="EmrE-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22911">
        <property type="entry name" value="ACYL-MALONYL CONDENSING ENZYME-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22911:SF137">
        <property type="entry name" value="SOLUTE CARRIER FAMILY 35 MEMBER G2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103481">
        <property type="entry name" value="Multidrug resistance efflux transporter EmrE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="167"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="192"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="218"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="249"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="1"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="138"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="268" mass="26884" checksum="4A5390C37216CDF9" modified="2008-05-20" version="1">MFGLAFAVAAAVAFSINAPLAYAATRRGASPTALVAVRNVVAAAVLAPFADFKISQGALLAVVLSSIFGPGLGDYFYFKAMKNSGVATAVTIGYTYIFTAQLFSAAIEGERIKAGALLGSALAFAGVATALGGRPTGRGVLYGVATSLSWGMASALLGAAAREATPYTIAAVRAAVLIPPFLALARGIGRPGLVYAALSGVVGLAAGTLAFVNAIAQIGVAPTVITTSLTPLLSQVFDRAINKSPISPKYIMGALLVSLGIASAVMIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCS8</accession>
    <name>B1YCS8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NADH/Ubiquinone/plastoquinone (Complex I)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0652</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350011.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCS8"/>
    <dbReference type="STRING" id="444157.Tneu_0652"/>
    <dbReference type="GeneID" id="6165282"/>
    <dbReference type="KEGG" id="tne:Tneu_0652"/>
    <dbReference type="eggNOG" id="arCOG01540">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_666695_0_0_2"/>
    <dbReference type="OrthoDB" id="29144at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22773">
        <property type="entry name" value="NADH DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="30"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="65"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="90"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="119"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="145"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="177"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="208"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="239"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="268"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="344"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="384"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="domain" description="NADH:quinone oxidoreductase/Mrp antiporter transmembrane" evidence="6">
        <location>
            <begin position="143"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="405" mass="42138" checksum="16806D7DDAF14812" modified="2008-05-20" version="1">MMELTYLAVAAILLSPLALRGGGRHIAAAISLALLALSAYGGATAALVIVAVALTLALDWRWGTLGVALAMSAVGAALAMYAYYSSASPLYALLGLFLTTAAVYGLLAMEKTRENVEGAVKYLVFSGVGKLLIVLGLLYPTDWGLYLATLGFMFELGIFPFHAWVVDAYATGSPRGLAALTAFSKVAALYLLLSVFNRVGGPTAVGEMLLAISLLSMFVANVAGLTARTIGRLMAYSSIAHMSYALTAVAMVWWLGPKNAEVFGARDTAQLAALVVVLEALASGLAKAGIFGHMGSPTADVAPPRKSLLNVVNALSLLGAPPLLGFWPKLLLILLALTYGTPQALAVALWVVINSVLATPYYFRAVKIMLDTPGPPAENATSTYTAALSIALGLAAPVAAWLFVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCT0</accession>
    <name>B1YCT0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">NADH dehydrogenase (Quinone)</fullName>
            <ecNumber evidence="8">1.6.5.11</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0654</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="1.6.5.11" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350013.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCT0"/>
    <dbReference type="STRING" id="444157.Tneu_0654"/>
    <dbReference type="GeneID" id="6165277"/>
    <dbReference type="KEGG" id="tne:Tneu_0654"/>
    <dbReference type="eggNOG" id="arCOG01537">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007100_4_2_2"/>
    <dbReference type="OrthoDB" id="19089at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050586">
        <property type="entry name" value="CPA3_Na-H_Antiporter_D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003918">
        <property type="entry name" value="NADH_UbQ_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42703:SF1">
        <property type="entry name" value="NA(+)_H(+) ANTIPORTER SUBUNIT D1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42703">
        <property type="entry name" value="NADH DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01437">
        <property type="entry name" value="NUOXDRDTASE4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="31"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="114"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="159"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="201"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="234"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="264"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="313"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="359"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="396"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="435"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="domain" description="NADH:quinone oxidoreductase/Mrp antiporter transmembrane" evidence="7">
        <location>
            <begin position="125"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="474" mass="51218" checksum="F7395A8F98E2888B" modified="2008-05-20" version="1">MTILASLLLPMALSLAAYVAAKRSPYIAGYISAAALLPLLAISSAVAFGGGTVAEGAMDGFNLLSFKVTPFNGVFLLTVALVGVFVALYSPPYMEHRGHELGRDTSIFYLTYGFFLGGLAGAFAAANLITVYIFIEVALVASLFQILYYGYGDRVRISVMYLVWSHVGALLMLAGFLLLYLRGVYYVPLLSGVAPGVDQAAFLLILVGSLIKMAALGVHMWLPYVHAEAPTPLSALLSPVLVGVGGYIIAAVGMYLVPPGWERWVVYYALATAVYGGLMAYLQKDLKRLFAYSTVSQMGYMLLGVSLKNAYGYTAVALLYLSHGLGKAVLFMTAGYLIMHLHTRDLEKMGGLYGWRPELAGASVVGFLNLAGVLTIGMISEILLTVAYASYFRSNYVYYIPYALMLVVTGVYAFNTTRLVFFGPHRYEGKGPIDIALASITAVAFISVLFLLPPFSSALADNIYNTARELGLWR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCX0</accession>
    <name>TF2B_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transcription initiation factor IIB</fullName>
            <shortName evidence="1">TFIIB</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">tfb</name>
        <name type="ordered locus">Tneu_0694</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TFIIB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350053.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCX0"/>
    <dbReference type="SMR" id="B1YCX0"/>
    <dbReference type="STRING" id="444157.Tneu_0694"/>
    <dbReference type="GeneID" id="6165484"/>
    <dbReference type="KEGG" id="tne:Tneu_0694"/>
    <dbReference type="eggNOG" id="arCOG01981">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043736_0_1_2"/>
    <dbReference type="OrthoDB" id="7429at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097550">
        <property type="term" value="C:transcription preinitiation complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017025">
        <property type="term" value="F:TBP-class protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070897">
        <property type="term" value="P:transcription preinitiation complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd20549">
        <property type="entry name" value="CYCLIN_TFIIB_archaea_like_rpt1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd20550">
        <property type="entry name" value="CYCLIN_TFIIB_archaea_like_rpt2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.472.10:FF:000023">
        <property type="entry name" value="Transcription initiation factor IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.472.170:FF:000001">
        <property type="entry name" value="Transcription initiation factor IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.10">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00383">
        <property type="entry name" value="TF2B_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013763">
        <property type="entry name" value="Cyclin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036915">
        <property type="entry name" value="Cyclin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000812">
        <property type="entry name" value="TFIIB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023484">
        <property type="entry name" value="TFIIB_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023486">
        <property type="entry name" value="TFIIB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013150">
        <property type="entry name" value="TFIIB_cyclin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013137">
        <property type="entry name" value="Znf_TFIIB"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001658">
        <property type="entry name" value="PRK00423.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11618:SF13">
        <property type="entry name" value="TRANSCRIPTION INITIATION FACTOR IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11618">
        <property type="entry name" value="TRANSCRIPTION INITIATION FACTOR IIB-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00382">
        <property type="entry name" value="TFIIB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08271">
        <property type="entry name" value="Zn_Ribbon_TF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00685">
        <property type="entry name" value="TIFACTORIIB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00385">
        <property type="entry name" value="CYCLIN"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47954">
        <property type="entry name" value="Cyclin-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57783">
        <property type="entry name" value="Zinc beta-ribbon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00782">
        <property type="entry name" value="TFIIB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51134">
        <property type="entry name" value="ZF_TFIIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0677">Repeat</keyword>
    <keyword id="KW-0804">Transcription</keyword>
    <keyword id="KW-0805">Transcription regulation</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <keyword id="KW-0863">Zinc-finger</keyword>
    <feature type="chain" id="PRO_1000122401" description="Transcription initiation factor IIB">
        <location>
            <begin position="1"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="repeat" description="1">
        <location>
            <begin position="149"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="repeat" description="2">
        <location>
            <begin position="243"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="TFIIB-type" evidence="2">
        <location>
            <begin position="33"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00383"/>
        </source>
    </evidence>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00469"/>
        </source>
    </evidence>
    <sequence length="333" mass="37498" checksum="888F02B65993A70F" modified="2008-05-20" version="1">MTSPNPPSSGKPLKLRINRDSEGYLSLVTDTGEVYRCPICGNDKFIYNYERGEVVCIVCGAVVQEQLLDLGPEWRAFTSEERGQRARTGAPLTRLISEALTTVIDWRDKDVSGKELDIKRKLEVIRLRKWQTRARVQTSYERNFIQAAQELERLRSSMGIPRPCIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKASRREVARCYRLLLRELNVKVPISDPTLYISRIAEQLKLSGEVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYKELAKALNIKVPVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCY4</accession>
    <name>B1YCY4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Orotidine 5'-phosphate decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0708</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350067.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCY4"/>
    <dbReference type="STRING" id="444157.Tneu_0708"/>
    <dbReference type="GeneID" id="6165573"/>
    <dbReference type="KEGG" id="tne:Tneu_0708"/>
    <dbReference type="eggNOG" id="arCOG00053">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081825_1_1_2"/>
    <dbReference type="OrthoDB" id="15246at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033982">
        <property type="term" value="F:3-dehydro-L-gulonate-6-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004590">
        <property type="term" value="F:orotidine-5'-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019854">
        <property type="term" value="P:L-ascorbic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd04726">
        <property type="entry name" value="KGPDC_HPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.70:FF:000022">
        <property type="entry name" value="3-keto-L-gulonate-6-phosphate decarboxylase UlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041710">
        <property type="entry name" value="HPS/KGPDC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001754">
        <property type="entry name" value="OMPdeCOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35039">
        <property type="entry name" value="3-KETO-L-GULONATE-6-PHOSPHATE DECARBOXYLASE SGBH-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35039:SF3">
        <property type="entry name" value="3-KETO-L-GULONATE-6-PHOSPHATE DECARBOXYLASE SGBH-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00215">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00934">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="Ribulose-phoshate binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Orotidine 5'-phosphate decarboxylase" evidence="3">
        <location>
            <begin position="2"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="222" mass="23869" checksum="1A45CEEB780206BA" modified="2008-05-20" version="1">MRLQVALDLVDLRRAVELTRELCNAGLEVVEAGTPLIKLYGLPAVSAIKAACPRAEVVADIKTADVGRLEAQLAREFGADWATVLGATNIETIEDFVNGGRSMGLKTAVDLIGVSNPLERAREILRSVAPDLFIFHLGIDAQRRTGLRFEELLAAASRLREETGISVGVAGGITEREIEIVTRSGKRVDVIIVGRAITGDASPASRFIIMNNILKQVRSPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD20</accession>
    <name>B1YD20_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0744</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350103.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD20"/>
    <dbReference type="STRING" id="444157.Tneu_0744"/>
    <dbReference type="GeneID" id="6165154"/>
    <dbReference type="KEGG" id="tne:Tneu_0744"/>
    <dbReference type="eggNOG" id="arCOG00475">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098912_0_0_2"/>
    <dbReference type="OrthoDB" id="28177at2157"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029041">
        <property type="entry name" value="FAD-linked_oxidoreductase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38755">
        <property type="entry name" value="5,10-METHYLENETETRAHYDROFOLATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38755:SF1">
        <property type="entry name" value="METHYLENE-TETRAHYDROFOLATE REDUCTASE C-TERMINAL DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51730">
        <property type="entry name" value="FAD-linked oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="225" mass="24478" checksum="18F92FB4E27F7848" modified="2008-05-20" version="1">MEVIAEITPLRDRDKVLRKLEAIKPYVEKVDIPESPGGKPTAHSLAVGVLAKQLGLEPIVHIRLLDVNKTGFKSLLGGAHILNIKYVVVLQGDPPAEGKPVGEVATEDAVAEAKKMGFVAGALLSFKRNYRERIAQLGADFYLALHLTDPRQLDGLPPAVYPYIMIKTGNNAALLERLRQTAVDLQQALKLVEELDGLVPGVVLSAPGDFEALLAALREVKRRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD36</accession>
    <name>B1YD36_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">FeS assembly ATPase SufC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0760</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350119.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD36"/>
    <dbReference type="STRING" id="444157.Tneu_0760"/>
    <dbReference type="GeneID" id="6164331"/>
    <dbReference type="KEGG" id="tne:Tneu_0760"/>
    <dbReference type="eggNOG" id="arCOG04236">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_48_1_2"/>
    <dbReference type="OrthoDB" id="18492at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03217">
        <property type="entry name" value="ABC_FeS_Assembly"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010230">
        <property type="entry name" value="FeS-cluster_ATPase_SufC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01978">
        <property type="entry name" value="sufC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43204">
        <property type="entry name" value="ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43204:SF1">
        <property type="entry name" value="ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="3">
        <location>
            <begin position="4"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="254" mass="27304" checksum="2BF9681777972159" modified="2008-05-20" version="1">MARLEVRELRVAVGGREVLKGVNLAVSSGEVAVLMGPNGSGKSTLFQTIAGNPKYEVLGGDILLDGESIRDLPPEDRFARGVFVGFQSPVAVPEVRFAFMLQAMLNIRAGKKLTDPNPQALAQAQKIAAELGLRPDVFSRGIGAGFSGGEFKRAEVLQALLLKPKIVVLDEPDSGLDIDGIAAVGKAIMELSASGSGVLLSTHYARVLRFIKPTRVYVMAEGRVILEGDEGVIKRIEEVGYQNYFKEIQKELAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD60</accession>
    <name>B1YD60_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">PhoH family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0784</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350143.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD60"/>
    <dbReference type="STRING" id="444157.Tneu_0784"/>
    <dbReference type="GeneID" id="6164431"/>
    <dbReference type="KEGG" id="tne:Tneu_0784"/>
    <dbReference type="eggNOG" id="arCOG04325">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_730800_0_0_2"/>
    <dbReference type="OrthoDB" id="195574at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004044">
        <property type="entry name" value="KH_dom_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003714">
        <property type="entry name" value="PhoH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051451">
        <property type="entry name" value="PhoH2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30473:SF2">
        <property type="entry name" value="PIN DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30473">
        <property type="entry name" value="PROTEIN PHOH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07650">
        <property type="entry name" value="KH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02562">
        <property type="entry name" value="PhoH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="Prokaryotic type KH domain (KH-domain type II)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50084">
        <property type="entry name" value="KH_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="PhoH-like protein" evidence="5">
        <location>
            <begin position="5"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="domain" description="KH type-2" evidence="6">
        <location>
            <begin position="249"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="371" mass="41433" checksum="3027F410FB3DD36B" modified="2008-05-20" version="1">MFDKLKPMTIGQERAVNVLKDPDNELIGLFGPTGTGKSLLSIAYGIWAVESGKAKRFIIARPIVDVATGEVLTPERLGEMYYRIAAAYLEDILGPYAEREYIERLLKEERVIVTDVSYLRGRTFDDSVIFLDDAQNVRPESAAEMLIRLGRGSRLIVAGDPIFQRPSDVEKDGATLLREALLGEEKAEVVDLGVKDIVRPGARRGIKLALELRMRKRQLSEVERYIYETARIFAPDADIITAVEFRTDKDSLGIRGENVPDAIVVVKEGQLGRVVGKGGERVKTIEGEVGARLRLLEMSLDFKQWVRAVHPVGWISKHIVDADFAGPELMVQVRKSEFGAFIGQRGAYIRLIDRVFRKLLGIGVRAVEAEE</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD64</accession>
    <name>AROB_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">3-dehydroquinate synthase</fullName>
            <shortName evidence="1">DHQS</shortName>
            <ecNumber evidence="1">4.2.3.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">aroB</name>
        <name type="ordered locus">Tneu_0788</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate = 3-dehydroquinate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21968"/>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58394"/>
            <dbReference type="EC" id="4.2.3.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 divalent metal cation per subunit. Can use either Co(2+) or Zn(2+).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 2/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.4" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350147.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD64"/>
    <dbReference type="SMR" id="B1YD64"/>
    <dbReference type="STRING" id="444157.Tneu_0788"/>
    <dbReference type="GeneID" id="6164698"/>
    <dbReference type="KEGG" id="tne:Tneu_0788"/>
    <dbReference type="eggNOG" id="arCOG00983">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001201_0_1_2"/>
    <dbReference type="OrthoDB" id="21407at2157"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003856">
        <property type="term" value="F:3-dehydroquinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08195">
        <property type="entry name" value="DHQS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1090.10">
        <property type="entry name" value="Dehydroquinate synthase-like - alpha domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00110">
        <property type="entry name" value="DHQ_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050071">
        <property type="entry name" value="Dehydroquinate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016037">
        <property type="entry name" value="DHQ_synth_AroB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030963">
        <property type="entry name" value="DHQ_synth_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030960">
        <property type="entry name" value="DHQS/DOIS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056179">
        <property type="entry name" value="DHQS_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43622">
        <property type="entry name" value="3-DEHYDROQUINATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43622:SF1">
        <property type="entry name" value="3-DEHYDROQUINATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01761">
        <property type="entry name" value="DHQ_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24621">
        <property type="entry name" value="DHQS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001455">
        <property type="entry name" value="DHQ_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56796">
        <property type="entry name" value="Dehydroquinate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword id="KW-0170">Cobalt</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0520">NAD</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000117500" description="3-dehydroquinate synthase">
        <location>
            <begin position="1"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="86"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="110"/>
            <end position="111"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00110"/>
        </source>
    </evidence>
    <sequence length="343" mass="37148" checksum="F187D2B4E1CCFDAD" modified="2008-05-20" version="1">MRRFFYRHSRGVTEVVVGSGLQYGDYVERPVVLAEEGLRPPIPGAPTLALRGGEEVKSLEVLTKVYGFLKEVGADRSTTLVAVGGGALLDLATFAAGTYMRGIRLVHIPTTLLAMVDAALGGKGAVDWGPVKNLIGVFYQPAAILCDLSWLGTLPERVYRSAFAEVVKYGLALDGDFYSWVRENAKALLARDGGALEYAVYRSLQLKAGVVEVDEFEERGVRQVLNVGHTVGHAVERVLGLLHGEAVAVGMVAELRLSSELGYLRESHVAEAAEVLSSLGLPTSVKATEQQLAEAAALVKFDKKRRGGHIYIPLVVRPGRWILEKIAVEEVEKAVRYVLRQGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD78</accession>
    <name>B1YD78_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0802</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350161.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD78"/>
    <dbReference type="STRING" id="444157.Tneu_0802"/>
    <dbReference type="GeneID" id="6164693"/>
    <dbReference type="KEGG" id="tne:Tneu_0802"/>
    <dbReference type="eggNOG" id="arCOG05547">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_665024_0_0_2"/>
    <dbReference type="OrthoDB" id="28550at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="412" mass="45096" checksum="4182D5E983AB9944" modified="2008-05-20" version="1">MSREAAARTLLFFLPTLVFIIALTAPGGDYAFRTGPLGEVQPGSLPYYVAVENKTLYLYSSPYAPWLYPGALELKLFYPTKVAVFSTCGAVAAGELGGQPGAYPVDVAVPPAFQGDCWVNFTHPSGWRQAVLLRVRLVDWYPGASERAVVELNGSGWQFLQVGQDGMLYIWERPVVRLPVAGCVSVYNRSVLLTEILRYVEAAPNVVPPVYVPSEAGAARYGAFIHLEGPAKLYIYGAPCLSHKPLNATPPPPLRGRLGVVLPTPTGPVFDQAEVNNTAVFKTGLRVVNYSVAPARVYKLYLYTYSTPVGMWGAVLRYNFALTAYLTTEISLLWPEGARSVEKRGDVWAIHTGGATYWVYSRAPPRTICEPPCGVPAGWADPIYVVVDPTGRWGGWPSVLSVKREVLQPWRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD83</accession>
    <name>B1YD83_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0807</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350166.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD83"/>
    <dbReference type="STRING" id="444157.Tneu_0807"/>
    <dbReference type="GeneID" id="6166279"/>
    <dbReference type="KEGG" id="tne:Tneu_0807"/>
    <dbReference type="eggNOG" id="arCOG07036">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1551879_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="181" mass="19113" checksum="383CB588B5385C2D" modified="2008-05-20" version="1">MGAEKTPQVQEMRQQAEEVEERRRGAVLIILGLAALLGAFWGGLTFLPAAAGGGAGVGGVGPEAVGVGNVVLVGFNGTQRFVLWAPPGSVVVWDVAFCNVADGDVVASVKLVDLPREFRRFRFYVNGSWFGWDGVNMTGWSGVFRRGLCLPGRLEVLVDGRAAPGGVYAARAQVEARPLGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDG3</accession>
    <name>B1YDG3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Photosystem I assembly BtpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0889</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the BtpA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350246.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDG3"/>
    <dbReference type="STRING" id="444157.Tneu_0889"/>
    <dbReference type="GeneID" id="6164279"/>
    <dbReference type="KEGG" id="tne:Tneu_0889"/>
    <dbReference type="eggNOG" id="arCOG01982">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075239_1_0_2"/>
    <dbReference type="OrthoDB" id="38543at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd04722">
        <property type="entry name" value="TIM_phosphate_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005137">
        <property type="entry name" value="BtpA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00259">
        <property type="entry name" value="thylakoid_BtpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21381:SF3">
        <property type="entry name" value="SGC REGION PROTEIN SGCQ-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21381">
        <property type="entry name" value="ZGC:162297"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03437">
        <property type="entry name" value="BtpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005956">
        <property type="entry name" value="BtpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="Ribulose-phoshate binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="242" mass="26000" checksum="29351A6D4B870DB1" modified="2008-05-20" version="1">MLIGVVHLLPADEPAYLDHAVRNARRLEEAGVDAVIVENFYDAPFKPEADFKTAVAVAIAAREVARALSIPIGVNLLRNACRKAAVIAKYAGGRFIRCNAYTDVVLSESGILLPQAPYLRGVKVLADVHVKHGLTLYPPTLAEAVETASTRARPDAIVITGRKTGEPPDPVEIATARAYTDLPVLAGSGICFNTLHLLKIVDGAIVGTCFKEGREVDFDKASRLVREAKAALSPRRRLSLVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDH0</accession>
    <name>B1YDH0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PilT protein domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0896</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350253.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDH0"/>
    <dbReference type="STRING" id="444157.Tneu_0896"/>
    <dbReference type="GeneID" id="6164444"/>
    <dbReference type="KEGG" id="tne:Tneu_0896"/>
    <dbReference type="eggNOG" id="arCOG04312">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2127925_0_0_2"/>
    <dbReference type="OrthoDB" id="15280at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1010">
        <property type="entry name" value="5'-nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041120">
        <property type="entry name" value="PIN_9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18477">
        <property type="entry name" value="PIN_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00670">
        <property type="entry name" value="PINc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="PIN domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PIN" evidence="1">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="113" mass="12266" checksum="9609AACB25FCCF47" modified="2008-05-20" version="1">MKLVLDTSALIYIVERRVDVGQLLEHEVYIPTAVREELALLAARNRKARAALELLPLLRPKIVERGGPADRAVLDAAKELGAVLVTGDRALAERARGEGVPVAKFHKGQLAVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDH7</accession>
    <name>B1YDH7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF2192 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0903</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350260.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDH7"/>
    <dbReference type="STRING" id="444157.Tneu_0903"/>
    <dbReference type="GeneID" id="6164509"/>
    <dbReference type="KEGG" id="tne:Tneu_0903"/>
    <dbReference type="eggNOG" id="arCOG04166">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093718_0_0_2"/>
    <dbReference type="OrthoDB" id="30879at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018693">
        <property type="entry name" value="DUF2192"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09958">
        <property type="entry name" value="DUF2192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="246" mass="27624" checksum="9208DDFB2F54D1F1" modified="2008-05-20" version="1">MEAVKQLHRDRIEAALHLLERVLSGAVTSRSALVAELQELYSRRGLEPFRGLSREGVYDKEVATVYLVGVYGAGVIAPGDFDNVFYIENKSMEAVELIRSIAEVVAPEQRDALRGKTEEIKGKSVEDRVFRVLRLVFTGAVLGYYPEMFLVKALRTYEAVYPELSERLVNYAAFYSAYKIAEDIAAGRIRTPEDLKIQKYSYCLKLGFQKCKPSDKLIAEVASAIYRVNKSVLAKLFAKGALPKLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDH9</accession>
    <name>B1YDH9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA polymerase B region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0905</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDH9"/>
    <dbReference type="STRING" id="444157.Tneu_0905"/>
    <dbReference type="KEGG" id="tne:Tneu_0905"/>
    <dbReference type="eggNOG" id="arCOG15270">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_493172_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1600.10">
        <property type="entry name" value="Palm domain of DNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017964">
        <property type="entry name" value="DNA-dir_DNA_pol_B_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023211">
        <property type="entry name" value="DNA_pol_palm_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00116">
        <property type="entry name" value="DNA_POLYMERASE_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="576" mass="63273" checksum="3B3A54213A5FA211" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDL8</accession>
    <name>B1YDL8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methionine synthase vitamin-B12 independent</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0945</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350301.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDL8"/>
    <dbReference type="STRING" id="444157.Tneu_0945"/>
    <dbReference type="GeneID" id="6164498"/>
    <dbReference type="KEGG" id="tne:Tneu_0945"/>
    <dbReference type="eggNOG" id="arCOG01876">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040013_0_0_2"/>
    <dbReference type="OrthoDB" id="17656at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003871">
        <property type="term" value="F:5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03311">
        <property type="entry name" value="CIMS_C_terminal_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002629">
        <property type="entry name" value="Met_Synth_C/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038071">
        <property type="entry name" value="UROD/MetE-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43844">
        <property type="entry name" value="METHIONINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43844:SF2">
        <property type="entry name" value="SYNTHASE, VITAMIN-B12 INDEPENDENT, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12060)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01717">
        <property type="entry name" value="Meth_synt_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51726">
        <property type="entry name" value="UROD/MetE-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cobalamin-independent methionine synthase MetE C-terminal/archaeal" evidence="1">
        <location>
            <begin position="7"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="Cobalamin-independent methionine synthase MetE C-terminal/archaeal" evidence="1">
        <location>
            <begin position="276"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="384" mass="44138" checksum="C77AA6CFF4C14C91" modified="2008-05-20" version="1">MPLPRTFITSVVGSWPRPTWLIEAFERFEKGQMDQQTFNQYLDDAAKLAIKDQEEAGLDVITDGEQRRTSFVAFVGQKIRGFKIVRVEELHPNAKEIMKKYKAPLTLWRPVIAGYIEDSVLAVDEVQYAKKVTQKPLKVTLPSPYLIMWEAWHAKISAPYYPRPEDAAEAYVKVLRNEIARLIDAGVAFIQLDEPMLGDLVEAEQNKPDRYKQVASELYGQRYRGLKDEIQLAVDLVNETVKGYTTSVRIGMHLDRWPTEESPIVGYERLAPQVFDVKVKQYVVEYKHPRMGNPEEFAKILPSDKEIGLGSIDVRDPKRVETVDEVVAHVEKVAKYVDPTRIWLNPDCGFAPGMYRAFPRAVAIEKLKVMVKAAQILRQRYWWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDP5</accession>
    <name>B1YDP5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cyclase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0973</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350328.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDP5"/>
    <dbReference type="STRING" id="444157.Tneu_0973"/>
    <dbReference type="GeneID" id="6164517"/>
    <dbReference type="KEGG" id="tne:Tneu_0973"/>
    <dbReference type="eggNOG" id="arCOG02462">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030671_3_0_2"/>
    <dbReference type="OrthoDB" id="9014at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004061">
        <property type="term" value="F:arylformamidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019441">
        <property type="term" value="P:L-tryptophan catabolic process to kynurenine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.50">
        <property type="entry name" value="Putative cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007325">
        <property type="entry name" value="KFase/CYL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037175">
        <property type="entry name" value="KFase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31118">
        <property type="entry name" value="CYCLASE-LIKE PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31118:SF12">
        <property type="entry name" value="CYCLASE-LIKE PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04199">
        <property type="entry name" value="Cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102198">
        <property type="entry name" value="Putative cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="208" mass="22483" checksum="2A58271BEF22B6F4" modified="2008-05-20" version="1">MYVDLTMEVGPATPVYPGSPAPAVLQWSRYDVHGYYSNVLFMPEHVGTHVDAPAHFVPGGRTVDQIEAGRFFGRFVALDFSGLPPRGEVGLREFERALPRGVELGPGWFVLFRTGYHAGVERWLDHPDISPELAEHLAKLGVYGVGTDAPSPDHPPFEVHRILLAREVLIFENLANLGAVVGKTGQFVALPLKVAGGSGAPVRAVALV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDQ7</accession>
    <name>B1YDQ7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0987</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350340.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDQ7"/>
    <dbReference type="STRING" id="444157.Tneu_0987"/>
    <dbReference type="GeneID" id="6164749"/>
    <dbReference type="KEGG" id="tne:Tneu_0987"/>
    <dbReference type="eggNOG" id="arCOG02611">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2420167_0_0_2"/>
    <dbReference type="OrthoDB" id="382117at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13412">
        <property type="entry name" value="HTH_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="91" mass="10640" checksum="A7E3EF0E8B023108" modified="2008-05-20" version="1">MERDQCSALINFMARIYGDDVKWRIIMELRRGYGYTLRELARRVGVTPKSLYKYLDELKQKGIVEIHKAGAQVTIVVLSSQHSWLKELEIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDS1</accession>
    <name>B1YDS1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">5-methylcytosine restriction system component-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1002</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350354.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDS1"/>
    <dbReference type="STRING" id="444157.Tneu_1002"/>
    <dbReference type="GeneID" id="6164842"/>
    <dbReference type="KEGG" id="tne:Tneu_1002"/>
    <dbReference type="eggNOG" id="arCOG05713">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_671964_0_0_2"/>
    <dbReference type="OrthoDB" id="26009at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="384" mass="43410" checksum="9866C248512D52CE" modified="2008-05-20" version="1">MGSAEWRRRDRRLLELAARWYVKHYVGGRNIMKLLGLSEDERYGVASALLAEFVNAMTVVVKAALRDLLVYREFAVVYGDEIFGALDVGRTVAVLPAGVYASLTYLPSLQAPEYGILRRMALKVSKWGREAAVDEEMRKDAERLRRIAKRLPKAYGRAAVDVREGPPWLRQGWAIYRAAKALVEGEVYVGERRGVGKALKFVNWRLYEMYIAMLVLEALRRLGWRTVGVDAEKRAVLVERDGKTLAVYLNRALPHHSIIEEVAGDEVRGRPDLTVANADVKAVVECKYSDRPGYIARGRFQVMTYMCEYSAKIGILVYPAASEEEAEDEEEEAAVRWANSGKPIRMKDGRAIYPLRIDPAYGATADEAREKHIGEVMRLLERSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDT4</accession>
    <name>B1YDT4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF5658 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350367.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDT4"/>
    <dbReference type="STRING" id="444157.Tneu_1015"/>
    <dbReference type="GeneID" id="6164942"/>
    <dbReference type="KEGG" id="tne:Tneu_1015"/>
    <dbReference type="eggNOG" id="arCOG09834">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2379538_0_0_2"/>
    <dbReference type="OrthoDB" id="374499at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="94" mass="10568" checksum="3A55CF60A5C678C4" modified="2008-05-20" version="1">MRPLVYAALALLIYFDALLTYIAVGHLGAYEVMLRFVNHHPESIWLVAAGKNAGVLYLALRRRRYPWLDYAALALALWHSAAVYNGVVQLAKVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDV9</accession>
    <name>B1YDV9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1041</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350392.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDV9"/>
    <dbReference type="STRING" id="444157.Tneu_1041"/>
    <dbReference type="GeneID" id="6164846"/>
    <dbReference type="KEGG" id="tne:Tneu_1041"/>
    <dbReference type="eggNOG" id="arCOG05426">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1830667_0_0_2"/>
    <dbReference type="OrthoDB" id="23633at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="139" mass="15310" checksum="936E171FBD42F53A" modified="2008-05-20" version="1">MDLPEIGELELENPDLSAAGPAEYTVNFGRPCRVAANVRLDALSFTWPRIRAKALAAVYKCGDLWPHLDVEMKATTYGKTIVILVDTVARHAEPDAEVAPLERGLLWNYAAKVGAAALCKTLKEILHIDTSCKTYTRLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDW8</accession>
    <name>B1YDW8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350401.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDW8"/>
    <dbReference type="STRING" id="444157.Tneu_1050"/>
    <dbReference type="GeneID" id="6165510"/>
    <dbReference type="KEGG" id="tne:Tneu_1050"/>
    <dbReference type="eggNOG" id="arCOG00692">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_711017_0_0_2"/>
    <dbReference type="OrthoDB" id="42910at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.140">
        <property type="entry name" value="Metal-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050287">
        <property type="entry name" value="MTA/SAH_deaminase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43794:SF11">
        <property type="entry name" value="AMIDOHYDROLASE-RELATED DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43794">
        <property type="entry name" value="AMINOHYDROLASE SSNA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="Metallo-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="351" mass="38700" checksum="C0816B2D3FF1C3CF" modified="2008-05-20" version="1">MRLRARYVLAGGLELVADGVVEVDDGGVVVGVGRYTGGVAADLGNVVLMPQLVNGHVHVLDAAILDRDDMYIDDLVGWPHGVKYHVVRRLVERGRHTALLEKVARRMRRYGVGCALVYAEYAAGDVEAALRRWGIEAVVFQEAHGGFPSYPNVQVATPVDHPPEYLRQLRARYRLVSTHVSETEDCHEAGDLELALKVLDADVLVHLVHLTPEEVGQIPPSKTVVVNPRANAYFVGRVAPVPQLLHLKPLLGTDNVFMNEPDPWAEMRFLHAYAAAAGWRLEEREILSMATVWGWEKMRCVPPIEPGHRLRAIAVAAPYAGEKVLKFLVKRAAHTDLVAFVEGSSIEPPPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE01</accession>
    <name>B1YE01_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Siroheme-sulfite reductase gamma subunit-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1083</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DsrC/TusE family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350433.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE01"/>
    <dbReference type="STRING" id="444157.Tneu_1083"/>
    <dbReference type="GeneID" id="6165101"/>
    <dbReference type="KEGG" id="tne:Tneu_1083"/>
    <dbReference type="eggNOG" id="arCOG04486">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2140297_0_0_2"/>
    <dbReference type="OrthoDB" id="27159at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.370">
        <property type="entry name" value="DsrC-like protein, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042072">
        <property type="entry name" value="DsrC-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025526">
        <property type="entry name" value="DsrC-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043163">
        <property type="entry name" value="DsrC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007453">
        <property type="entry name" value="DsrC/TusE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04358">
        <property type="entry name" value="DsrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69721">
        <property type="entry name" value="DsrC, the gamma subunit of dissimilatory sulfite reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="112" mass="12146" checksum="7288FC7C7B2E1EF2" modified="2008-05-20" version="1">MKCPQAVVIGGRRVELDRCLPKNPGDWSHELARALAEANGISYSQLVQRVVEYVRRFWLENGSCPPLSVLEADLGVDRRTVMESFGGSYDAICILAGAEPPSGCLSRVLAGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE49</accession>
    <name>B1YE49_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1132</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350481.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE49"/>
    <dbReference type="STRING" id="444157.Tneu_1132"/>
    <dbReference type="GeneID" id="6165795"/>
    <dbReference type="KEGG" id="tne:Tneu_1132"/>
    <dbReference type="eggNOG" id="arCOG01441">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_751430_0_0_2"/>
    <dbReference type="OrthoDB" id="25826at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010184">
        <property type="entry name" value="CRISPR-assoc_prot_MJ0385"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09703">
        <property type="entry name" value="Cas_Csa4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="361" mass="40673" checksum="479EF0D7B8581090" modified="2008-05-20" version="1">MTQCPREMITPGHGIIADALIMHGLIKILHIEGKMEGWAERRGERFAVCADRPELNWIDQWEPMELLEIAAEAKAKGKGEESEEEQVPYFGLVYDLYRSTVDRGNFPSWISDLREALYALKSDFDLSEEHREKRGEGRARPKKRGYYTLYLPLSGVYGKYVVENYGIRQSQYAVCATCFALSTLGYIYGTVKARVERRSSSGGGHDVFNLTFIPRGRTSLRTLMTLQRMAGLVEMRPGDLNELGAVVYMLSVGETIYAVRESVDILVWITQRAGNYFQRTVGVNIFRGDRLLEAIAQIKYRAPRWPKIARQLGSSLNVLGEYLAFGGDVYHVIRSVMADLGRKGGKLAELEGLAEALKKIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8K0</accession>
    <name>B1Y8K0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">CRISPR system Cms endoribonuclease Csm3</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">CRISPR type III A-associated RAMP protein Csm3</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1149</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CRISPR-associated Csm3 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350498.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8K0"/>
    <dbReference type="STRING" id="444157.Tneu_1149"/>
    <dbReference type="GeneID" id="6166025"/>
    <dbReference type="KEGG" id="tne:Tneu_1149"/>
    <dbReference type="eggNOG" id="arCOG02658">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067743_0_0_2"/>
    <dbReference type="OrthoDB" id="44077at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013412">
        <property type="entry name" value="CRISPR-assoc_RAMP_Csm3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052216">
        <property type="entry name" value="CRISPR_Csm3_endoribonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005537">
        <property type="entry name" value="RAMP_III_fam"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02582">
        <property type="entry name" value="cas7_TM1809"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35579">
        <property type="entry name" value="CRISPR SYSTEM CMS ENDORIBONUCLEASE CSM3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35579:SF6">
        <property type="entry name" value="DUF324 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03787">
        <property type="entry name" value="RAMPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="CRISPR type III-associated protein" evidence="9">
        <location>
            <begin position="58"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="307" mass="34906" checksum="2C07B678035ABECD" modified="2008-05-20" version="1">MSEQYPQARLKLSNLVKINFKLRASGLLIRSGKTKEVLGAADIQPMSIQRVYRLNNAEHPLTVPYIPASSLKGRARSLLEAALGLPLHTTDGKIYLHMRIVQKNIMDEDPFCPVDNIFGTPSIAFRELDERYRYLFECWAPSRAIFRDLFPSEGYVKSLCDAKGGCAYVSLEDFLEEKNENRIDRVTSTADPREILRLRPGVEFDGSITVLVYDIDLKPKEDCVKYTKVDEIKRGTPPVKYYLDMLIKSLRLVEETYLGASGTRGYGQVEFTNLEAKLLDALTFSELRRAEAPSLAKLGEEVSQWWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8K3</accession>
    <name>B1Y8K3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">CRISPR-associated protein, Csm1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1152</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350501.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8K3"/>
    <dbReference type="STRING" id="444157.Tneu_1152"/>
    <dbReference type="GeneID" id="6166036"/>
    <dbReference type="KEGG" id="tne:Tneu_1152"/>
    <dbReference type="eggNOG" id="arCOG02666">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_371178_0_0_2"/>
    <dbReference type="OrthoDB" id="27218at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054767">
        <property type="entry name" value="Cas10-Cmr2_palm2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013408">
        <property type="entry name" value="Cas10/Csm1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052117">
        <property type="entry name" value="Cas10/Csm1_subtype-III-A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02578">
        <property type="entry name" value="cas_TM1811_Csm1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36528">
        <property type="entry name" value="CRISPR SYSTEM SINGLE-STRAND-SPECIFIC DEOXYRIBONUCLEASE CAS10/CSM1 (SUBTYPE III-A)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36528:SF1">
        <property type="entry name" value="CRISPR SYSTEM SINGLE-STRAND-SPECIFIC DEOXYRIBONUCLEASE CAS10_CSM1 (SUBTYPE III-A)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22335">
        <property type="entry name" value="Cas10-Cmr2_palm2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109604">
        <property type="entry name" value="HD-domain/PDEase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="3">
        <location>
            <begin position="8"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="Cas10/Cmr2 second palm" evidence="4">
        <location>
            <begin position="487"/>
            <end position="607"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF22335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="755" mass="83246" checksum="A9AD411FFCF99E18" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8M0</accession>
    <name>B1Y8M0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF3782 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1170</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350518.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8M0"/>
    <dbReference type="STRING" id="444157.Tneu_1170"/>
    <dbReference type="GeneID" id="6165271"/>
    <dbReference type="KEGG" id="tne:Tneu_1170"/>
    <dbReference type="eggNOG" id="arCOG01423">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064028_2_1_2"/>
    <dbReference type="OrthoDB" id="28088at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024271">
        <property type="entry name" value="DUF3782"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012431">
        <property type="entry name" value="PDDEXK_10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34314">
        <property type="entry name" value="CRENARCHAEAL PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34314:SF6">
        <property type="entry name" value="DUF3782 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12644">
        <property type="entry name" value="DUF3782"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07788">
        <property type="entry name" value="PDDEXK_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="222" mass="26158" checksum="0B0349A0371628FB" modified="2008-05-20" version="1">MVDFVGVDLKREFLRLLREDEEFRLAVAGLIGLGEVLQELRRLREDFQTYIKEQERRWRENERRWRMYERRWRANERRWREAFKRFEALERGLQRVDRRLVLLGARWGVEAEEAFREAVRGIVEDVLGVGEVVRWSYFDGEGLVFGFPSPVEVDVLVKDGVHILVEVKASATDSDVAKLWRIGQLYRRATGVEPKLALVTPHIDERGRKAAEALGIQVYTYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8P4</accession>
    <name>B1Y8P4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1195</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350542.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8P4"/>
    <dbReference type="STRING" id="444157.Tneu_1195"/>
    <dbReference type="GeneID" id="6166268"/>
    <dbReference type="KEGG" id="tne:Tneu_1195"/>
    <dbReference type="eggNOG" id="arCOG01355">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011543_3_3_2"/>
    <dbReference type="OrthoDB" id="2305at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="entry name" value="tm_1862 like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045784">
        <property type="entry name" value="Radical_SAM_N2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42731:SF1">
        <property type="entry name" value="RADICAL SAM DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42731">
        <property type="entry name" value="SLL1084 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19864">
        <property type="entry name" value="Radical_SAM_N2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01082">
        <property type="entry name" value="B12-binding_domain_containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="2">
        <location>
            <begin position="176"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="478" mass="53115" checksum="7E1682A7379D39A3" modified="2008-05-20" version="1">MRRVAYRKNAIKVALLYPSTYAVAMSSAVFHMLYFKLQDEGFYVERFTADRGPRGVEDGTPLSHFDYVVATVHYELDYVNLVKMLREAGLSPRSAGREKPRLVVGGPPVSANPEPLAEFADAVAVGELEPLWGALVRYIATGEEAEGLYYPARGPHRVKIAHAADAAYDYRRIPEPEAAFSLSVELARGCPYSCLFCMESYITKPYRPRDWQAALRDAEELYGKYGIRPSLVALTANAHPHFKDLLREALGRGVPLSLPSLRAELLDGETLELIAALGQRTLTIAPESSERLRKALGKDISDRDVLRVAEQAASLGLKIKMYLMVGLPCERDDDLEEVAELAAEAKRRGARLALSVNPFIPKPQTPLQYSAMEKPRRLREKIALLRRAPHDEFTYYEPELGAVQAALALGGREVAGHIEEAAGAPSPVGYLKRLLREGAFGYVFAPRDDPLPWGHVEGHHPHGELKRRYLRYLEAACG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="39" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Q6</accession>
    <name>B1Y8Q6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP10</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1208</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Q6"/>
    <dbReference type="STRING" id="444157.Tneu_1208"/>
    <dbReference type="KEGG" id="tne:Tneu_1208"/>
    <dbReference type="eggNOG" id="arCOG00746">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_181231_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="57" mass="6440" checksum="1E2CBF054D3358D4" modified="2008-05-20" version="1">MCVVFVVAVIHVLGVHAYSFVRYGVDPHDDVETAVKKLEAKAPHLAQFLREASYYLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8R1</accession>
    <name>B1Y8R1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1213</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350559.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8R1"/>
    <dbReference type="STRING" id="444157.Tneu_1213"/>
    <dbReference type="GeneID" id="6165107"/>
    <dbReference type="KEGG" id="tne:Tneu_1213"/>
    <dbReference type="eggNOG" id="arCOG05616">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_299899_0_0_2"/>
    <dbReference type="OrthoDB" id="28719at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="991" mass="109014" checksum="5E59174BB8445CDC" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8R3</accession>
    <name>B1Y8R3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1215</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350561.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8R3"/>
    <dbReference type="STRING" id="444157.Tneu_1215"/>
    <dbReference type="GeneID" id="6165087"/>
    <dbReference type="KEGG" id="tne:Tneu_1215"/>
    <dbReference type="eggNOG" id="arCOG07478">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2127930_0_0_2"/>
    <dbReference type="OrthoDB" id="29126at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="114" mass="12288" checksum="FF11BA3BADF2BE44" modified="2008-05-20" version="1">MYLARDVLILAGLMALAAAVVASLFPAREGVSDVPACTDCLLKLRGGYAVVQEGDSAVLYLGTREVARLGWAYYRGRPLSVGDRVVCDPMYLYLAAGLAYVSCGEEVVIGRRLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8R4</accession>
    <name>B1Y8R4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1216</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350562.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8R4"/>
    <dbReference type="STRING" id="444157.Tneu_1216"/>
    <dbReference type="GeneID" id="6165090"/>
    <dbReference type="KEGG" id="tne:Tneu_1216"/>
    <dbReference type="eggNOG" id="arCOG05614">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1782559_0_0_2"/>
    <dbReference type="OrthoDB" id="28053at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="145" mass="15661" checksum="E3D2DE9512739F63" modified="2008-05-20" version="1">MEDLVAASAFIVALSALTVYTALVLKPFMPAAVVEAPIAPARDAPVRHIYVYNSSSGLYAVEYEGAGVEEFRRSLGVPGDLVAVFEVYPGGYRCSLYGSRAVRLGADPYTGLWCPPPFRPHVDPDCVPVAIAARGRWLVAQYRCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8S5</accession>
    <name>B1Y8S5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Cobalamin adenosyltransferase-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1227</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350573.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8S5"/>
    <dbReference type="STRING" id="444157.Tneu_1227"/>
    <dbReference type="GeneID" id="6166100"/>
    <dbReference type="KEGG" id="tne:Tneu_1227"/>
    <dbReference type="eggNOG" id="arCOG00489">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1514696_0_0_2"/>
    <dbReference type="OrthoDB" id="25825at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1200.10">
        <property type="entry name" value="Cobalamin adenosyltransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016030">
        <property type="entry name" value="CblAdoTrfase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036451">
        <property type="entry name" value="CblAdoTrfase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01923">
        <property type="entry name" value="Cob_adeno_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89028">
        <property type="entry name" value="Cobalamin adenosyltransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cobalamin adenosyltransferase-like" evidence="5">
        <location>
            <begin position="13"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="200" mass="22454" checksum="3D57A25BFE427221" modified="2008-05-20" version="1">MPVVSKPCIYAGTCPGDLGDTEVLWFGRQLCVSKASGIIKVFGALETALSYINAAAVLCRRQRKCLMRAYWSLFYLGFYLSTGAEKYYTKSVSMLQKAVRCVYPMLSDTPLGWLICLDRCCATINNARVWVRWVERRLAAVEEGREAIFVLNHLGSLLFELMRTRHHAVKTASGYTVVKPQKAHPPPVWLNEENTTASPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8X4</accession>
    <name>B1Y8X4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TatD-related deoxyribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1276</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350622.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8X4"/>
    <dbReference type="STRING" id="444157.Tneu_1276"/>
    <dbReference type="GeneID" id="6165773"/>
    <dbReference type="KEGG" id="tne:Tneu_1276"/>
    <dbReference type="eggNOG" id="arCOG00893">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_985571_0_0_2"/>
    <dbReference type="OrthoDB" id="52767at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.140">
        <property type="entry name" value="Metal-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001130">
        <property type="entry name" value="TatD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011589">
        <property type="entry name" value="UCP004961"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42206:SF1">
        <property type="entry name" value="METAL-DEPENDENT HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42206">
        <property type="entry name" value="METAL-DEPENDENT HYDROLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01026">
        <property type="entry name" value="TatD_DNase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004961">
        <property type="entry name" value="UCP004961_TatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="Metallo-dependent hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="286" mass="31073" checksum="C4B473EAA7C80E9C" modified="2008-05-20" version="1">MAVGVFDNHAHANEYTGFGAGEVARRFRAAGGVGLVFVSLLSWSIGGVPGDRGWVVRLYDHTVRNAEVARGVGLVSGAVVGVHPAECVRLLEAGWGAGEVEEFMRWAVDLAARYVEEGRAVGMGEFGRPHWPVGEGVVDLCNRVLLYVFERARDVGAVVHLHLERRGRETVDSIAALVARAGVDPARVVMHHVEGALAGYAYARGLSPSVPLGRRGEFEDALKSGPVFVVESDYIDDKSRPGAVIPPWTLASKLKQYVARGVLTEEDMYKICVENVRRIYGDRLNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y962</accession>
    <name>B1Y962_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ribosomal protein S26</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1365</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350710.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y962"/>
    <dbReference type="STRING" id="444157.Tneu_1365"/>
    <dbReference type="GeneID" id="6164661"/>
    <dbReference type="KEGG" id="tne:Tneu_1365"/>
    <dbReference type="eggNOG" id="arCOG04305">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_129451_3_0_2"/>
    <dbReference type="OrthoDB" id="51292at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1740.20:FF:000004">
        <property type="entry name" value="30S ribosomal protein S26e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1740.20">
        <property type="entry name" value="Ribosomal protein S26e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000892">
        <property type="entry name" value="Ribosomal_eS26"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038551">
        <property type="entry name" value="Ribosomal_eS26_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006816">
        <property type="entry name" value="PRK09335.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12538">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12538:SF0">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01283">
        <property type="entry name" value="Ribosomal_S26e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="98" mass="11379" checksum="52601CBC4DEB6E55" modified="2008-05-20" version="1">MPKKRKNRGRKKGDKGREPYVHCDNCGKITPRSKSVRLTVPYSPVPPDLARELEKQGVIISRYLVTKTYCINCAVFFGIIKVRPREERKKRIPLQQVI</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y973</accession>
    <name>PFDB_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Prefoldin subunit beta</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">GimC subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pfdB</name>
        <name type="ordered locus">Tneu_1376</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterohexamer of two alpha and four beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the prefoldin subunit beta family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350721.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y973"/>
    <dbReference type="SMR" id="B1Y973"/>
    <dbReference type="STRING" id="444157.Tneu_1376"/>
    <dbReference type="GeneID" id="6164750"/>
    <dbReference type="KEGG" id="tne:Tneu_1376"/>
    <dbReference type="eggNOG" id="arCOG01342">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_131909_2_1_2"/>
    <dbReference type="OrthoDB" id="27242at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016272">
        <property type="term" value="C:prefoldin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051087">
        <property type="term" value="F:protein-folding chaperone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051131">
        <property type="term" value="P:chaperone-mediated protein complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd23162">
        <property type="entry name" value="Prefoldin_beta_GimC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.370:FF:000013">
        <property type="entry name" value="Prefoldin subunit beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00307">
        <property type="entry name" value="PfdB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002777">
        <property type="entry name" value="PFD_beta-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012713">
        <property type="entry name" value="PfdB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009053">
        <property type="entry name" value="Prefoldin"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02338">
        <property type="entry name" value="gimC_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21431">
        <property type="entry name" value="PREFOLDIN SUBUNIT 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21431:SF0">
        <property type="entry name" value="PREFOLDIN SUBUNIT 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01920">
        <property type="entry name" value="Prefoldin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46579">
        <property type="entry name" value="Prefoldin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0143">Chaperone</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000115624" description="Prefoldin subunit beta">
        <location>
            <begin position="1"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00307"/>
        </source>
    </evidence>
    <sequence length="126" mass="14307" checksum="1A03D4B201E0FD32" modified="2008-05-20" version="1">MAQIPPSLQDLVNRFNQAQAQLQSVLLRKQQYEAELKEVEKALAEIEKLPQDAKIYKSVGNFLIPQTKDAALQELKERKELLELHAKTLTRQESMLREQIDKLRDEINKELGKLRGGAQEAAKGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9F6</accession>
    <name>B1Y9F6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ferric uptake regulator, Fur family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1460</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350804.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9F6"/>
    <dbReference type="STRING" id="444157.Tneu_1460"/>
    <dbReference type="GeneID" id="6165572"/>
    <dbReference type="KEGG" id="tne:Tneu_1460"/>
    <dbReference type="eggNOG" id="arCOG01868">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096072_4_4_2"/>
    <dbReference type="OrthoDB" id="21318at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000976">
        <property type="term" value="F:transcription cis-regulatory region binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1900376">
        <property type="term" value="P:regulation of secondary metabolite biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07153">
        <property type="entry name" value="Fur_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002481">
        <property type="entry name" value="FUR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33202:SF7">
        <property type="entry name" value="FERRIC UPTAKE REGULATION PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33202">
        <property type="entry name" value="ZINC UPTAKE REGULATION PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01475">
        <property type="entry name" value="FUR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="130" mass="14784" checksum="E684B0E39879D0BD" modified="2008-05-20" version="1">METAQLVQALKERGYRVTPQRIEVINLVMEKLAKRQHPTFNDILNEVKQKMPTISASTVYSVLKLLEEGGFVVSFEHNGRTYYDSASPHVNVVCVNTNRVIDLEDGEITELFRKRGIHPTSIVVKAVCRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9G3</accession>
    <name>B1Y9G3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">threonine ammonia-lyase</fullName>
            <ecNumber evidence="4">4.3.1.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1467</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-isoleucine biosynthesis; 2-oxobutanoate from L-threonine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the serine/threonine dehydratase family.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.19" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350811.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9G3"/>
    <dbReference type="STRING" id="444157.Tneu_1467"/>
    <dbReference type="GeneID" id="6165547"/>
    <dbReference type="KEGG" id="tne:Tneu_1467"/>
    <dbReference type="eggNOG" id="arCOG01431">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021152_4_1_2"/>
    <dbReference type="OrthoDB" id="9915at2157"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00054"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003941">
        <property type="term" value="F:L-serine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004794">
        <property type="term" value="F:threonine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006565">
        <property type="term" value="P:L-serine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006567">
        <property type="term" value="P:L-threonine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04886">
        <property type="entry name" value="ACT_ThrD-II-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01562">
        <property type="entry name" value="Thr-dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1100:FF:000007">
        <property type="entry name" value="L-threonine dehydratase catabolic TdcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.260:FF:000104">
        <property type="entry name" value="Threonine dehydratase (IlvA)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1100:FF:000005">
        <property type="entry name" value="Threonine dehydratase catabolic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044561">
        <property type="entry name" value="ACT_ThrD-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050147">
        <property type="entry name" value="Ser/Thr_Dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000634">
        <property type="entry name" value="Ser/Thr_deHydtase_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005789">
        <property type="entry name" value="Thr_deHydtase_catblc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="TrpB-like_PALP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="TrpB-like_PALP_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01127">
        <property type="entry name" value="ilvA_1Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48078:SF6">
        <property type="entry name" value="L-THREONINE DEHYDRATASE CATABOLIC TDCB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48078">
        <property type="entry name" value="THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="ACT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="Tryptophan synthase beta subunit-like PLP-dependent enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00165">
        <property type="entry name" value="DEHYDRATASE_SER_THR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0412">Isoleucine biosynthesis</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="8">
        <location>
            <begin position="327"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="403" mass="43937" checksum="036007BAF3ED4A45" modified="2008-05-20" version="1">MILLEEALAVIREKQREGKIHRTPTLRSESLSRIAGGEVYLKLEALQKTGSFKIRGAYFAMYKYIREGYREFVTASSGNHAQGVAYAAQLHGVKATVVMPETTPWLKVKKTQDYGAAVVLHGESYYEAEIEARKLATGGARFLHAYDDYYVISGQATLGVEVVEDLPDVDVVVVPVGGGGLISGVAYAVKKARPSAKVIGVQASGAPAVYLSLKEGRPVVIERVDTIADGIAVKKPGDITMKMIQEYVDDVVLVDENEIVDALYLLLERTRVVAEGAGAVSVAALMTGKVNVRGKKAVAVISGGNIDAPILMRVLMKALARQRRVVKLVGEVPDRPGTLAKASSLLAAHNVNILEVYHERYDPEQRPNYVRLVFVVEVPGTLDMSKLLDELERHAFYFSVEKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9J0</accession>
    <name>B1Y9J0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2'-5' RNA ligase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1495</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350838.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9J0"/>
    <dbReference type="STRING" id="444157.Tneu_1495"/>
    <dbReference type="GeneID" id="6165500"/>
    <dbReference type="KEGG" id="tne:Tneu_1495"/>
    <dbReference type="eggNOG" id="arCOG01737">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1691602_0_0_2"/>
    <dbReference type="OrthoDB" id="27256at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1140.10">
        <property type="entry name" value="Cyclic phosphodiesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009097">
        <property type="entry name" value="Cyclic_Pdiesterase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13563">
        <property type="entry name" value="2_5_RNA_ligase2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55144">
        <property type="entry name" value="LigT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="155" mass="17120" checksum="F3121795CC547F4B" modified="2008-05-20" version="1">MGYIYGVLPPIPPLRPFEGVVPLKPHITLVKIRSPAKVEVRYRQFVVRLGPVVLMPSAARPRYIALKAEPYGELAALRSLLQSALGDAVEERHADFKPHLSVYAVRLKRPTADELSPAVEEASKYVGASFEVKAIHLIDTTGGVYMPIYSLPLYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="94" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9J1</accession>
    <name>B1Y9J1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1496</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350839.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9J1"/>
    <dbReference type="STRING" id="444157.Tneu_1496"/>
    <dbReference type="GeneID" id="6165549"/>
    <dbReference type="KEGG" id="tne:Tneu_1496"/>
    <dbReference type="eggNOG" id="arCOG00187">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017344_4_1_2"/>
    <dbReference type="OrthoDB" id="30658at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001546">
        <property type="entry name" value="RNase L inhibitor homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013283">
        <property type="entry name" value="RLI1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007209">
        <property type="entry name" value="RNaseL-inhib-like_metal-bd_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009945">
        <property type="entry name" value="PRK13409.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19248">
        <property type="entry name" value="ATP-BINDING TRANSPORT PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04068">
        <property type="entry name" value="Fer4_RLI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01868">
        <property type="entry name" value="ABCEFAMILY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="3"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="41"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="68"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="332"/>
            <end position="554"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="565"/>
            <end position="590"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="577"/>
            <end position="590"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="590" mass="65556" checksum="B8953533B1645E90" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9J6</accession>
    <name>B1Y9J6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1501</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350844.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9J6"/>
    <dbReference type="GeneID" id="6165681"/>
    <dbReference type="KEGG" id="tne:Tneu_1501"/>
    <dbReference type="eggNOG" id="arCOG05598">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1145253_0_0_2"/>
    <dbReference type="OrthoDB" id="28047at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="241" mass="27095" checksum="C03482450F96B293" modified="2008-05-20" version="1">MIEKAVKRVVGVEDAPPWLVREVFKKVEEGLDIASAVNYLAPRLSEIHRANLAKFRPGRASIRKASPFLTAELIERLGYGVQFVELFGHTLPAAVRGERLYTPVVTIFDGKRKSLYLAAKSKRLRESVVQLTTTEEVEGVLAEVVTVDKPPYYYLYVSANVARLIDGSRPIQAEVNRRYGDLYYYWRYFRERGYLVLVGREIGGVAVDLLAVGLGKYAVVSGAGRRKVGRLRKVVDSVYVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9K0</accession>
    <name>B1Y9K0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CBS domain containing membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1505</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350848.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9K0"/>
    <dbReference type="STRING" id="444157.Tneu_1505"/>
    <dbReference type="GeneID" id="6164634"/>
    <dbReference type="KEGG" id="tne:Tneu_1505"/>
    <dbReference type="eggNOG" id="arCOG00600">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076812_0_0_2"/>
    <dbReference type="OrthoDB" id="43333at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd02205">
        <property type="entry name" value="CBS_pair_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="entry name" value="CBS-domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051257">
        <property type="entry name" value="Diverse_CBS-Domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080:SF2">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="CBS-domain pair"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="12"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="87"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="150"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="225"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="282" mass="31408" checksum="86397E2245D8C16C" modified="2008-05-20" version="1">MDMFTRPVIEFATRNVVSVQEGEKVVNAIKTMVNLDIRRLPILRGDKLVGIITMLDVLDAIYSWVSDKNAEGSLYSDIYMKSVAEIGTRSVITAKPDTPVGEVISLFLRHNFGSMPIVDEAGRLLGIFTEWDVLKIASELDFPHRVRDVMTRIVYVLTPYSTVMDVLEGITIYKFRRYPIVDETGKVVAMLHAKDLLRFFAADETIDKIKQGAVDEVLNSYAINIAKSPIFLVKAGDPVVDVIRKMLEYDVGGVPVVNEEGTAVVGMVTEKTLMLLFEGSAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9N3</accession>
    <name>B1Y9N3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Polyprenyl synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1538</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350881.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9N3"/>
    <dbReference type="STRING" id="444157.Tneu_1538"/>
    <dbReference type="GeneID" id="6164953"/>
    <dbReference type="KEGG" id="tne:Tneu_1538"/>
    <dbReference type="eggNOG" id="arCOG01727">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1060147_0_0_2"/>
    <dbReference type="OrthoDB" id="26738at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004659">
        <property type="term" value="F:prenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="entry name" value="Farnesyl Diphosphate Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033749">
        <property type="entry name" value="Polyprenyl_synt_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12001">
        <property type="entry name" value="GERANYLGERANYL PYROPHOSPHATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12001:SF85">
        <property type="entry name" value="SHORT CHAIN ISOPRENYL DIPHOSPHATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="Terpenoid synthases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00723">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="263" mass="29440" checksum="AA89C41963E83D57" modified="2008-05-20" version="1">MSVLPGEVLAALERVKTHLQNVGSDIRPQSLREAVRYYIERPGKLLRPLLLLTFSYTLDRRSVLDLRIIQAAAIVELLHVVSLLQDDVMDKHDERRGAKTPRALYGDGRSIVASDWLIAESIKRALQLGPDIVKYLADVAQRLSIGQALDLDGRYDEAAEFKTAPLIEASLVLPAMLLGRREILDSAKKLGQLLGVLYQYADDYSDEKIERREATELVDEVKRALSRLRETMGEAIAPFENLIRLLLERAASGDLTVARSLIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Q5</accession>
    <name>B1Y9Q5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Restriction endonuclease type IV Mrr domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0019</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349399.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Q5"/>
    <dbReference type="GeneID" id="6166310"/>
    <dbReference type="KEGG" id="tne:Tneu_0019"/>
    <dbReference type="eggNOG" id="arCOG03727">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_126932_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007560">
        <property type="entry name" value="Restrct_endonuc_IV_Mrr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04471">
        <property type="entry name" value="Mrr_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Restriction endonuclease type IV Mrr" evidence="1">
        <location>
            <begin position="57"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="182" mass="20312" checksum="279C77BA1E9D92C3" modified="2008-05-20" version="1">MAGLEAAVKRYLAGDRSALEVLRDAGFLDGREPSTRGYVLYKALKLGIDVSSYARYLDWREFEEFIRHVFSEFGYMVASNVRLSCGRGAEFDVVAWSREVAFVAEAKRWKGGRWSEVARRHLEKVRRCLTKLQAFAPSVVPLVVTSTEAAAISDGVPIVPIGKIGNFLASFHDLKDQIAVLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9V5</accession>
    <name>B1Y9V5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1581</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350924.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9V5"/>
    <dbReference type="STRING" id="444157.Tneu_1581"/>
    <dbReference type="GeneID" id="6166064"/>
    <dbReference type="KEGG" id="tne:Tneu_1581"/>
    <dbReference type="eggNOG" id="arCOG01273">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_1_0_2"/>
    <dbReference type="OrthoDB" id="15394at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482:SF1">
        <property type="entry name" value="BRANCHED-CHAIN AMINO ACID TRANSPORT PERMEASE PROTEIN LIVM-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="18"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="47"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="111"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="186"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="240"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="273"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="321"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="363" mass="39390" checksum="568C1C6730C5BB34" modified="2008-05-20" version="1">MIPQIDPGALLVLLRETLIMFAIYGVYVLSLNLEAGYLGLPQFGKVMYLAMGGVAVGGIATKLALWIYGGAISAKAGISPLKDLNTYCAAYQYQSIAVVNDIFKSSPLEGILFFLVAVALSALLAGVLGVVMAGPALRLREDYLGILFLVSAELVRVVSTYTPQVACGVFGAVVPDPFAWMGDYRPWGYLAVTLLFLVFTFFMLDRLVNSPFGRALRAIRDAETAARVFGKDIVKFRARVLGVASALGGVAGALFVFYNTFVNMGQFVPYYTFVAWAMLMVGGMGNNVGALVGVAVYYIVSRSLEIYKDSLRAVINADPTFLQYIIFGIVIIVMVMFRPQGLVGERPSKTLSRRVLERVRGEA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9W1</accession>
    <name>PYRI_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aspartate carbamoyltransferase regulatory chain</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pyrI</name>
        <name type="ordered locus">Tneu_1588</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in allosteric regulation of aspartate carbamoyltransferase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Contains catalytic and regulatory chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PyrI family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350930.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9W1"/>
    <dbReference type="SMR" id="B1Y9W1"/>
    <dbReference type="STRING" id="444157.Tneu_1588"/>
    <dbReference type="GeneID" id="6166098"/>
    <dbReference type="KEGG" id="tne:Tneu_1588"/>
    <dbReference type="eggNOG" id="arCOG04229">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_128576_0_0_2"/>
    <dbReference type="OrthoDB" id="7000at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009347">
        <property type="term" value="C:aspartate carbamoyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006221">
        <property type="term" value="P:pyrimidine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.20">
        <property type="entry name" value="Aspartate carbamoyltransferase regulatory subunit, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.140">
        <property type="entry name" value="Aspartate carbamoyltransferase regulatory subunit, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00002">
        <property type="entry name" value="Asp_carb_tr_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020545">
        <property type="entry name" value="Asp_carbamoyltransf_reg_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002801">
        <property type="entry name" value="Asp_carbamoylTrfase_reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020542">
        <property type="entry name" value="Asp_carbamoyltrfase_reg_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036792">
        <property type="entry name" value="Asp_carbatrfase_reg_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036793">
        <property type="entry name" value="Asp_carbatrfase_reg_N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00240">
        <property type="entry name" value="ATCase_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35805">
        <property type="entry name" value="ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35805:SF1">
        <property type="entry name" value="ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01948">
        <property type="entry name" value="PyrI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02748">
        <property type="entry name" value="PyrI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57825">
        <property type="entry name" value="Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54893">
        <property type="entry name" value="Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000088842" description="Aspartate carbamoyltransferase regulatory chain">
        <location>
            <begin position="1"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00002"/>
        </source>
    </evidence>
    <sequence length="151" mass="16863" checksum="79538FA6C7DE3BFF" modified="2008-05-20" version="1">MSKELMVSKIERGTVIDHIPAGRALAVLRVLGITGREGVRVALVMNVESKKLGRKDIVKIEGRELTPEEVNIISAVAPTATINIVRDYTVVRKFKVSPPEVVKGRFRCKNPTCITNAPREPVEPTFLLVRREPPLFVCTYCGRYHELGDLL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9W7</accession>
    <name>TRUD_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Probable tRNA pseudouridine synthase D</fullName>
            <ecNumber evidence="1">5.4.99.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA pseudouridine(13) synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA pseudouridylate synthase D</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA-uridine isomerase D</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">truD</name>
        <name type="ordered locus">Tneu_1594</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>uridine(13) in tRNA = pseudouridine(13) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:42540"/>
            <dbReference type="Rhea" id="RHEA-COMP:10105"/>
            <dbReference type="Rhea" id="RHEA-COMP:10106"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="EC" id="5.4.99.27"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the pseudouridine synthase TruD family.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.27" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350936.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9W7"/>
    <dbReference type="SMR" id="B1Y9W7"/>
    <dbReference type="STRING" id="444157.Tneu_1594"/>
    <dbReference type="GeneID" id="6164795"/>
    <dbReference type="KEGG" id="tne:Tneu_1594"/>
    <dbReference type="eggNOG" id="arCOG04252">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005281_4_1_2"/>
    <dbReference type="OrthoDB" id="1798at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0160150">
        <property type="term" value="F:tRNA pseudouridine(13) synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031119">
        <property type="term" value="P:tRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1510.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2350.20">
        <property type="entry name" value="TruD, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01082">
        <property type="entry name" value="TruD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001656">
        <property type="entry name" value="PsdUridine_synth_TruD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020119">
        <property type="entry name" value="PsdUridine_synth_TruD_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011760">
        <property type="entry name" value="PsdUridine_synth_TruD_insert"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042214">
        <property type="entry name" value="TruD_catalytic"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00094">
        <property type="entry name" value="tRNA_TruD_broad"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13326:SF21">
        <property type="entry name" value="PSEUDOURIDYLATE SYNTHASE PUS7L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13326">
        <property type="entry name" value="TRNA PSEUDOURIDINE SYNTHASE D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01142">
        <property type="entry name" value="TruD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037016">
        <property type="entry name" value="Pseudouridin_synth_euk_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="Pseudouridine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50984">
        <property type="entry name" value="TRUD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01268">
        <property type="entry name" value="UPF0024"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0413">Isomerase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <feature type="chain" id="PRO_1000136856" description="Probable tRNA pseudouridine synthase D">
        <location>
            <begin position="1"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="domain" description="TRUD" evidence="1">
        <location>
            <begin position="167"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01082"/>
        </source>
    </evidence>
    <sequence length="412" mass="46015" checksum="B071CD7F78BB66B3" modified="2008-05-20" version="1">MIEAPPFDRSLGMLYYATDTYPSGGVIKAKPEDFLVEEVLYDGTVVALEGVSIEPRVGGWTWIHVVKRNVDTVKLVLRLAKALGLRSRDISIGGIKDTRAVTSQIVSVRGNVADLPKIPNVQFLGLWPMDKPIAPSLIYGNRFTIVLRNVERRECAEAALAALGKAALPNYYGYQRFGTIRPVSHLLGKALLRKDAEGFFHVMFCKIFPYESEAAKKARELACRGEYQKALEAFPRGFVEERALLRRLVRGSDLWNAAMAIPLQILRIYIEAAQSHLFNLLLSKRMELGPLDRPVEGDLVEVNGQVTYYVEDLGGEVVVPVVGAGVRMPRGRVLEAFVKVLKEEGLEPSAFLQMPRGLRAYGSYRRARLQARDLAYSLGDDLVLRFVLPRGGYATVLLREVVKPTEPYRHGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9X3</accession>
    <name>B1Y9X3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">UPF0273 protein Tneu_1600</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1600</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the UPF0273 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9X3"/>
    <dbReference type="STRING" id="444157.Tneu_1600"/>
    <dbReference type="KEGG" id="tne:Tneu_1600"/>
    <dbReference type="eggNOG" id="arCOG01171">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023669_2_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01076">
        <property type="entry name" value="UPF0273"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014774">
        <property type="entry name" value="KaiC-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010624">
        <property type="entry name" value="KaiC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022475">
        <property type="entry name" value="UPF0273_KaiC-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03877">
        <property type="entry name" value="thermo_KaiC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637">
        <property type="entry name" value="UPF0273 PROTEIN TM_0370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637:SF1">
        <property type="entry name" value="UPF0273 PROTEIN TM_0370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06745">
        <property type="entry name" value="ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01874">
        <property type="entry name" value="DNAREPAIRADA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51146">
        <property type="entry name" value="KAIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KaiC" evidence="4">
        <location>
            <begin position="15"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="42"/>
            <end position="49"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="293" mass="32674" checksum="57AB6121A00C4AAA" modified="2008-05-20" version="1">MASIKICGLYTTVIPRVRTYVQGLDEILYGGVPERSVVLLSGGPGTGKSILGRQFLYNGLRRGETGVFVALEEHPVAVRRSFRHFGWDISQYEREGKFAIVDAFTGGVGSAAQRERYLVKQVDDVYELSDVLRQAIRDIGARRVVVDSVSTLYLTKPAVARATIMTLKRVIAGLGCTAFFVSQVSVGERGFGGPGVEHAVDGIIRLDLDEIDGKLHRSIIVWKMRDTKHSMLRHPMEIKDSGIEVMWDRYLKIVGSTVKIEPISKEEVEAMRKAVEEVEKQPAQRKVEIEVED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Y2</accession>
    <name>B1Y9Y2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1609</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350951.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Y2"/>
    <dbReference type="STRING" id="444157.Tneu_1609"/>
    <dbReference type="GeneID" id="6165938"/>
    <dbReference type="KEGG" id="tne:Tneu_1609"/>
    <dbReference type="eggNOG" id="arCOG05668">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1656938_0_0_2"/>
    <dbReference type="OrthoDB" id="28871at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="112"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="157" mass="17022" checksum="1F3674766DDB1D84" modified="2008-05-20" version="1">MINIISRSVRIGLIFVIFSVLYTLFNVWWAGVLDVYPLLVGVYMMTFVSVVPYIVVNIATALRNRGDGRWLVTVGLSLALFASLTAAMVKLGYLRGAVAPFSLTQLRFDSTLALSLALLGLSSLVYLGGVLPEGKKLARAIYFSLVEGGEDGETEVV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Y6</accession>
    <name>PYRH_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Uridylate kinase</fullName>
            <shortName evidence="1">UK</shortName>
            <ecNumber evidence="1">2.7.4.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Uridine monophosphate kinase</fullName>
            <shortName evidence="1">UMP kinase</shortName>
            <shortName evidence="1">UMPK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pyrH</name>
        <name type="ordered locus">Tneu_1613</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the reversible phosphorylation of UMP to UDP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>UMP + ATP = UDP + ADP</text>
            <dbReference type="Rhea" id="RHEA:24400"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.22"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="1">Inhibited by UTP.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; CTP biosynthesis via de novo pathway; UDP from UMP (UMPK route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the UMP kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.22" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350955.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Y6"/>
    <dbReference type="SMR" id="B1Y9Y6"/>
    <dbReference type="STRING" id="444157.Tneu_1613"/>
    <dbReference type="GeneID" id="6165112"/>
    <dbReference type="KEGG" id="tne:Tneu_1613"/>
    <dbReference type="eggNOG" id="arCOG00858">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079546_0_0_2"/>
    <dbReference type="OrthoDB" id="372251at2157"/>
    <dbReference type="UniPathway" id="UPA00159">
        <property type="reaction ID" value="UER00275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033862">
        <property type="term" value="F:UMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044210">
        <property type="term" value="P:'de novo' CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006225">
        <property type="term" value="P:UDP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="entry name" value="Acetylglutamate kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01220_A">
        <property type="entry name" value="PyrH_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011817">
        <property type="entry name" value="Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011818">
        <property type="entry name" value="Uridylate_kinase_arch/spir"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02076">
        <property type="entry name" value="pyrH_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42833">
        <property type="entry name" value="URIDYLATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42833:SF4">
        <property type="entry name" value="URIDYLATE KINASE PUMPKIN, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005650">
        <property type="entry name" value="Uridylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="Carbamate kinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0418">Kinase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000139219" description="Uridylate kinase">
        <location>
            <begin position="1"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="6"/>
            <end position="10"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="107"/>
            <end position="113"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01220"/>
        </source>
    </evidence>
    <sequence length="217" mass="23607" checksum="EA072A49860EC622" modified="2008-05-20" version="1">MAVVVKLSGRIFEDEELVLKYAEAIKSYGVKIAVVTGGGELARRYISAAKRGGASNTFQDLIGIYASRLNALLLISLLGDAYPKVPTNIEEFLEAWRSHRVVVAGGFQPGQSTATVAALVAEAAGASVLLNAANIDAVYSDDPRKNPKAERLPHLKYDEFERIVRSSSLPGGYELMDVWSISILRRNCITVYIFDGRRPEHIGAILRGENPGTKITC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Z7</accession>
    <name>B1Y9Z7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1624</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350966.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Z7"/>
    <dbReference type="STRING" id="444157.Tneu_1624"/>
    <dbReference type="GeneID" id="6165755"/>
    <dbReference type="KEGG" id="tne:Tneu_1624"/>
    <dbReference type="eggNOG" id="arCOG05673">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2476155_0_0_2"/>
    <dbReference type="OrthoDB" id="28298at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="91" mass="10160" checksum="58D76C1C30ECF644" modified="2008-05-20" version="1">MEKKDCLFAILDFCGGGSYDQQKLREILKQGRIRARKLVLISRCGGAAVYLPAVRALASENMDFPVRHYHELEVAEAAELEGCGTYEVLNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="95" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA06</accession>
    <name>B1YA06_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DNA repair and recombination protein RadA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1633</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the eukaryotic RecA-like protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350975.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA06"/>
    <dbReference type="STRING" id="444157.Tneu_1633"/>
    <dbReference type="GeneID" id="6165756"/>
    <dbReference type="KEGG" id="tne:Tneu_1633"/>
    <dbReference type="eggNOG" id="arCOG00415">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041732_0_0_2"/>
    <dbReference type="OrthoDB" id="31129at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016467">
        <property type="entry name" value="DNA_recomb/repair_RecA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010995">
        <property type="entry name" value="DNA_repair_Rad51/TF_NusA_a-hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013632">
        <property type="entry name" value="Rad51_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020588">
        <property type="entry name" value="RecA_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22942:SF30">
        <property type="entry name" value="MEIOTIC RECOMBINATION PROTEIN DMC1_LIM15 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22942">
        <property type="entry name" value="RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08423">
        <property type="entry name" value="Rad51"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005856">
        <property type="entry name" value="Rad51"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47794">
        <property type="entry name" value="Rad51 N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50162">
        <property type="entry name" value="RECA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RecA family profile 1" evidence="6">
        <location>
            <begin position="73"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR005856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="307" mass="34143" checksum="EB12C81781D99842" modified="2008-05-20" version="1">MGRDFGLEGVGPRTLEKLRELGVQSLEHLSEFTVEELVEAGVEYDRAVKILQQAAQRVGAARAVSLGELRRREFRVFKTGLGSFDGGTPWGGIREGFIYEFAGEYGTGKSMFAHQLAVAGVREGFTERVVYIDTEGTFSPTLAEAIARRFGVEIERLDSAVVVYQPANATQLEQIVKFEIPRHIGEGCRLVIVDTITALYRAEFPGREMLAARQQRIHYLVDWLRRHARTFGVTSVLTNQVMDVPEIFAGGVKRPAGGNVLAHAVNARFMMARPNKAKPEGYMWPLDVPGMSPEVKIEYRITEAGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA30</accession>
    <name>B1YA30_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Molybdopterin cofactor biosynthesis protein with MoaC region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0046</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349425.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA30"/>
    <dbReference type="STRING" id="444157.Tneu_0046"/>
    <dbReference type="GeneID" id="6164730"/>
    <dbReference type="KEGG" id="tne:Tneu_0046"/>
    <dbReference type="eggNOG" id="arCOG01530">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1145254_0_0_2"/>
    <dbReference type="OrthoDB" id="10067at2157"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.640">
        <property type="entry name" value="Molybdopterin cofactor biosynthesis C (MoaC) domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036522">
        <property type="entry name" value="MoaC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002820">
        <property type="entry name" value="Mopterin_CF_biosynth-C_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01967">
        <property type="entry name" value="MoaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55040">
        <property type="entry name" value="Molybdenum cofactor biosynthesis protein C, MoaC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Molybdopterin cofactor biosynthesis C (MoaC)" evidence="3">
        <location>
            <begin position="141"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="245" mass="26154" checksum="EFA7071E080A194A" modified="2008-05-20" version="1">MIVDVSRKPDVYRYAVASAEVAAERCNTSVAARAALQAYRYLPFLHPLPLRASAGCRGGKLYVEGAAEWQTGVEMDVLFGALVGSVASGIETIRNLSVDVKKKGEAPPDLSAGPLQETPFARGGDLETSAYGEMVLRNVELAKGPVEKGHPIYAAQTAAALNAKRLCELLGGPCPSIQHFKIDIEAGSRVEATATVKARDMSPAPEALFAVGVALLTIWDMVKKWEKDEMGQYPATKIAVITLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAB2</accession>
    <name>B1YAB2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">YkgJ family cysteine cluster protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0129</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349507.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAB2"/>
    <dbReference type="GeneID" id="6165418"/>
    <dbReference type="KEGG" id="tne:Tneu_0129"/>
    <dbReference type="eggNOG" id="arCOG02585">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1259151_0_0_2"/>
    <dbReference type="OrthoDB" id="36424at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005358">
        <property type="entry name" value="Puta_zinc/iron-chelating_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35866">
        <property type="entry name" value="PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35866:SF1">
        <property type="entry name" value="YKGJ FAMILY CYSTEINE CLUSTER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03692">
        <property type="entry name" value="CxxCxxCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="210" mass="23846" checksum="9F5A47AB3DFCF3DC" modified="2008-05-20" version="1">MVFRCEPGCALCCKASPVTVLPHEVYILQRLAAELGAAAVFTPAYKVADVKSGLRVALSYLMHLDEEGKCPFLEGTRCLVHDRYKPLTCRSFPYLPKVIKYDIDPAAREVRIDVRFVMSTLCPVVRRDLSPADVAKMSSIGLAVKYAPKETEVAVKTLEKRYFYARVLSELWKRGLVELDEEGKYPFFPVVNGFAFIRRFYPELTLEKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAC1</accession>
    <name>B1YAC1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heat shock protein Hsp20</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1648</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350989.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAC1"/>
    <dbReference type="STRING" id="444157.Tneu_1648"/>
    <dbReference type="GeneID" id="6165474"/>
    <dbReference type="KEGG" id="tne:Tneu_1648"/>
    <dbReference type="eggNOG" id="arCOG01832">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2127923_0_0_2"/>
    <dbReference type="OrthoDB" id="26084at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd06464">
        <property type="entry name" value="ACD_sHsps-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="HSP20-like chaperones"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="SHSP" evidence="3">
        <location>
            <begin position="19"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="115" mass="13206" checksum="73F7B377B5238125" modified="2008-05-20" version="1">MEDFKKAMEEITRSIQRMVEEVKERRDYRLLEEGDVVRIEIDMPGLEPGDISLSISKDGTSLKAEGARGDRRYTKLIRMPFKIDPSTAEAYYRSGVLTITAKKVKEEEIKIPVRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="40" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAH0</accession>
    <name>B1YAH0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PaREP2b</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1698</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351038.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAH0"/>
    <dbReference type="GeneID" id="6166213"/>
    <dbReference type="KEGG" id="tne:Tneu_1698"/>
    <dbReference type="eggNOG" id="arCOG09780">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1122676_0_0_2"/>
    <dbReference type="OrthoDB" id="377005at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011689">
        <property type="entry name" value="PaRep2b"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07775">
        <property type="entry name" value="PaRep2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PaRep2b" evidence="1">
        <location>
            <begin position="4"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="238" mass="26463" checksum="94AAA076CB20ED9B" modified="2008-05-20" version="1">MSSDVEVSVEDLKLEGGSPSAHLVVKAGGSAVRFRLGIRVGEKLELVFGPSTRERAEEAARVLRALGVEAEPRQHGGRWRVYVTTNAIASAHKALREAVARAVEAAAERGAVEKEVAEGWLRKLRSPSPPGWPDFSVRVDKGELRVEHNTRRRERMEEVVAKLRALGLAEGADYRRYSGRNMERLRITPDGVRRLAYIAKHAEDPRAREEAAALLTHLIERASDDRARERLKKLVEGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAI1</accession>
    <name>B1YAI1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1710</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAI1"/>
    <dbReference type="STRING" id="444157.Tneu_1710"/>
    <dbReference type="KEGG" id="tne:Tneu_1710"/>
    <dbReference type="eggNOG" id="arCOG07835">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2713000_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="72" mass="8335" checksum="C08053A1EE8A46B2" modified="2008-05-20" version="1">MWPKFKSHAASTPPLAKFLNIDDTLFVEELPREVELLLEAYREAKRPQIKIGYIRVKRVVGVFYGVEGEDKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAK7</accession>
    <name>B1YAK7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">nicotinate phosphoribosyltransferase</fullName>
            <ecNumber evidence="2">6.3.4.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1738</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>5-phospho-alpha-D-ribose 1-diphosphate + nicotinate + ATP + H2O = nicotinate beta-D-ribonucleotide + ADP + phosphate + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:36163"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32544"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.21"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from nicotinate: step 1/1.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.21" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351075.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAK7"/>
    <dbReference type="STRING" id="444157.Tneu_1738"/>
    <dbReference type="GeneID" id="6164469"/>
    <dbReference type="KEGG" id="tne:Tneu_1738"/>
    <dbReference type="eggNOG" id="arCOG01481">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043773_0_0_2"/>
    <dbReference type="OrthoDB" id="371831at2157"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00457"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004516">
        <property type="term" value="F:nicotinate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004514">
        <property type="term" value="F:nicotinate-nucleotide diphosphorylase (carboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD+ biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01571">
        <property type="entry name" value="NAPRTase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.20">
        <property type="entry name" value="Quinolinate phosphoribosyl transferase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053190">
        <property type="entry name" value="NAPRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035809">
        <property type="entry name" value="NAPRTase_arc-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007229">
        <property type="entry name" value="Nic_PRibTrfase-Fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036068">
        <property type="entry name" value="Nicotinate_pribotase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037128">
        <property type="entry name" value="Quinolinate_PRibosylTase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002638">
        <property type="entry name" value="Quinolinate_PRibosylTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022412">
        <property type="entry name" value="Quinolinate_PRibosylTrfase_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006415">
        <property type="entry name" value="PRK08662.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43202:SF1">
        <property type="entry name" value="NICOTINATE PHOSPHORIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43202">
        <property type="entry name" value="NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01729">
        <property type="entry name" value="QRPTase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02749">
        <property type="entry name" value="QRPTase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000484">
        <property type="entry name" value="NAPRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51690">
        <property type="entry name" value="Nicotinate/Quinolinate PRTase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54675">
        <property type="entry name" value="Nicotinate/Quinolinate PRTase N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Quinolinate phosphoribosyl transferase N-terminal" evidence="9">
        <location>
            <begin position="17"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="domain" description="Quinolinate phosphoribosyl transferase C-terminal" evidence="8">
        <location>
            <begin position="114"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00048668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="385" mass="42510" checksum="70592B7FE81F5266" modified="2008-05-20" version="1">MFYTASPEDVVSGKTTDIYFLRTVEVLKNAGLTDVKVRAEFHLSSLPKDYRWGLFTGLKEVLELLRGRRVTVYAMPEGTAFYENEPVMVIEGPYLEFAVLETAILGILRHYSSISTKAARVKKAAGGKTCLFFGARALHPAVQPMADRAAYIGGCDGVATVKGAEMLGVKPSGTMPHALMIIFRAAMGDHTLAWLWFDRSVPPDVPRIVLADTFLDEREEALLAARMLGPRLHGVRLDTPGSRRGNMRRIVEEVRWALDLHGYRDVKIYVSGGLDEPQVAALRDVVDGFGVGTAIAFPPSIDLSMDIVEVEVGGRWVPITKRGKLPGFKQVYKCGSRRAVAKWGEPAPCGEPLLQKWIEEGALVKTPPSDSEIREYVLRQLAELE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAL8</accession>
    <name>B1YAL8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Molybdenum cofactor synthesis domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0140</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the MoaB/Mog family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349518.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAL8"/>
    <dbReference type="STRING" id="444157.Tneu_0140"/>
    <dbReference type="GeneID" id="6164610"/>
    <dbReference type="KEGG" id="tne:Tneu_0140"/>
    <dbReference type="eggNOG" id="arCOG00214">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077358_2_3_2"/>
    <dbReference type="OrthoDB" id="205337at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00886">
        <property type="entry name" value="MogA_MoaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.980.10:FF:000006">
        <property type="entry name" value="Molybdenum cofactor biosynthesis protein B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="entry name" value="MoaB/Mog-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012245">
        <property type="entry name" value="MoaB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008284">
        <property type="entry name" value="MoCF_biosynth_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00177">
        <property type="entry name" value="molyb_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43232">
        <property type="entry name" value="MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43232:SF2">
        <property type="entry name" value="MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006443">
        <property type="entry name" value="MoaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="Molybdenum cofactor biosynthesis proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01078">
        <property type="entry name" value="MOCF_BIOSYNTHESIS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoaB/Mog" evidence="3">
        <location>
            <begin position="17"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="172" mass="18985" checksum="6467100880CFDB79" modified="2008-05-20" version="1">MAHEEHRARGQRVARFYIVTVSTSRYREKAEGRTPVDESGDLAERMAREAGHQVVGRDLIPDDLHLIRSKILELAAREDVDVVVFTGGTGLTKTDVTIEAVRPLFEKEMEGFGDVFRYYSIQEVGTAAFLTRATGGVVGGKAVFLLPGSPNAVKVGMRIILDEVSHLLYLVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAM7</accession>
    <name>B1YAM7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phosphoribosyl-AMP cyclohydrolase</fullName>
            <shortName evidence="7">PRA-CH</shortName>
            <ecNumber evidence="7">3.5.4.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">hisI</name>
        <name evidence="9" type="ordered locus">Tneu_0149</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>1-(5-phospho-beta-D-ribosyl)-5'-AMP + H2O = 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:20049"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58435"/>
            <dbReference type="ChEBI" id="CHEBI:59457"/>
            <dbReference type="EC" id="3.5.4.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="7">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 3/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the PRA-CH family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.19" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAM7"/>
    <dbReference type="STRING" id="444157.Tneu_0149"/>
    <dbReference type="KEGG" id="tne:Tneu_0149"/>
    <dbReference type="eggNOG" id="arCOG02676">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048577_5_1_2"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00008"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004635">
        <property type="term" value="F:phosphoribosyl-AMP cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004636">
        <property type="term" value="F:phosphoribosyl-ATP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:L-histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.810:FF:000001">
        <property type="entry name" value="Histidine biosynthesis bifunctional protein HisIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.810">
        <property type="entry name" value="Phosphoribosyl-AMP cyclohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01021">
        <property type="entry name" value="HisI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026660">
        <property type="entry name" value="PRA-CH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002496">
        <property type="entry name" value="PRib_AMP_CycHydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038019">
        <property type="entry name" value="PRib_AMP_CycHydrolase_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF000768">
        <property type="entry name" value="PRK00051.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42945">
        <property type="entry name" value="HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42945:SF1">
        <property type="entry name" value="HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN HIS7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01502">
        <property type="entry name" value="PRA-CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141734">
        <property type="entry name" value="HisI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="5 7 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Phosphoribosyl-AMP cyclohydrolase" evidence="8">
        <location>
            <begin position="57"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="139" mass="15454" checksum="289D22BC3AF81728" modified="2008-05-20" version="1">MLINFPTAHATMPLPVEPRPLASPEEAWRVAKSLNYRHIGGTVVAVVQDVETKDVLMVGYMDPVAVVLTLTTGMAHYYSTTRNRIWLKGETSGHYQIVREFRTDCDGDAVVLKVVQIGVACHLGTRSCFESPNSLRIRL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="91" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAS9</accession>
    <name>SYL_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Leucine--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Leucyl-tRNA synthetase</fullName>
            <shortName evidence="1">LeuRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">leuS</name>
        <name type="ordered locus">Tneu_0203</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>tRNA(Leu) + L-leucine + ATP = L-leucyl-tRNA(Leu) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:11688"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57427"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.4"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.4" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349579.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAS9"/>
    <dbReference type="SMR" id="B1YAS9"/>
    <dbReference type="STRING" id="444157.Tneu_0203"/>
    <dbReference type="GeneID" id="6165044"/>
    <dbReference type="KEGG" id="tne:Tneu_0203"/>
    <dbReference type="eggNOG" id="arCOG00809">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004174_0_0_2"/>
    <dbReference type="OrthoDB" id="23906at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004823">
        <property type="term" value="F:leucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006429">
        <property type="term" value="P:leucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00812">
        <property type="entry name" value="LeuRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2320.20">
        <property type="entry name" value="Class I aminoacyl-tRNA synthetases (RS)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.730.10">
        <property type="entry name" value="Isoleucyl-tRNA Synthetase, Domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.720">
        <property type="entry name" value="leucyl-tRNA synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.740.10">
        <property type="entry name" value="Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00049_A">
        <property type="entry name" value="Leu_tRNA_synth_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020791">
        <property type="entry name" value="Leu-tRNA-lgase_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004493">
        <property type="entry name" value="Leu-tRNA-synth_Ia_arc/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00395">
        <property type="entry name" value="leuS_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF008957">
        <property type="entry name" value="PRK12300.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45794:SF1">
        <property type="entry name" value="LEUCINE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45794">
        <property type="entry name" value="LEUCYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="ValRS/IleRS/LeuRS editing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000091375" description="Leucine--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="945"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region">
        <location>
            <begin position="43"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region">
        <location>
            <begin position="638"/>
            <end position="642"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="641"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00049"/>
        </source>
    </evidence>
    <sequence length="945" mass="107198" checksum="CC177301AAFCDF38" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB03</accession>
    <name>B1YB03_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1785</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351122.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB03"/>
    <dbReference type="STRING" id="444157.Tneu_1785"/>
    <dbReference type="GeneID" id="6164986"/>
    <dbReference type="KEGG" id="tne:Tneu_1785"/>
    <dbReference type="eggNOG" id="arCOG05641">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_095960_0_0_2"/>
    <dbReference type="OrthoDB" id="27157at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="252" mass="27844" checksum="4D90CDDFF66BDC3C" modified="2008-05-20" version="1">MDLVFFFVAVLSAAVAALGLIMYRLIKSLEIYLIPLYAEVIRKRERDYVLVEFLTSLLVSKGIISQAEAGALKSLSATGPLTAEDLDRVDEILDKDPKQLTYEEIVDLKRVAYKLLGRLDKKSVRLGLKLLRYAAGIEEALTAGVKALVGAQAEKVEMSYDHDTCSVYLTTYKRDGTVERSQGPDVECVTETVAVLKALARRDPTVGGELAEKALARYRKCRGSDSAGCRALLNALTNLEKKSLDLLLEDRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB13</accession>
    <name>B1YB13_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">2-oxoacid oxidoreductase (ferredoxin)</fullName>
            <ecNumber evidence="2">1.2.7.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1795</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a 2-oxocarboxylate + 2 oxidized [2Fe-2S]-[ferredoxin] + CoA = an acyl-CoA + 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:42316"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="1.2.7.11"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterodimer composed of an alpha and a beta subunit.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.11" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351132.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB13"/>
    <dbReference type="STRING" id="444157.Tneu_1795"/>
    <dbReference type="GeneID" id="6165204"/>
    <dbReference type="KEGG" id="tne:Tneu_1795"/>
    <dbReference type="eggNOG" id="arCOG01601">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058423_0_0_2"/>
    <dbReference type="OrthoDB" id="296931at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018491">
        <property type="term" value="F:2-oxobutyrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03376">
        <property type="entry name" value="TPP_PFOR_porB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.970">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051479">
        <property type="entry name" value="PorB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme_TPP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42897">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42897:SF2">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiamine pyrophosphate enzyme TPP-binding" evidence="5">
        <location>
            <begin position="62"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00048893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="336" mass="36994" checksum="649D45315384B028" modified="2008-05-20" version="1">MVKTAVKAAEEYEGQYEYATFELPNEELFLPGHGLCAGCTIGVIARHMLKVFGPDTVVVNATGCAEVSTVVYPRTNWAVPWIHVAFGNGGSVASGIEAAIKALKRRGVIDPSRKINVVVFAGDGGTADIGFQALSGMLERGHRVIYVMYDNEGYMNTGIQRSGTTPFGASATTSPAGKVVPGNTRHKKPMAAIAAAHGIPYVATANPAYVHDMVYKFKKAIEVDGPSFIHVLQSCTPGWRFEPKYAIRVLELATETGYWVNYEIENGEFRVTLPVPRRKHVKCFLQLQGRFRHLKPDEIEYIQKVIDRDVEEINRIMGREVIGPVDPSLPCLTERK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB17</accession>
    <name>B1YB17_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NADH/Ubiquinone/plastoquinone (Complex I)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1799</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351136.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB17"/>
    <dbReference type="STRING" id="444157.Tneu_1799"/>
    <dbReference type="GeneID" id="6164700"/>
    <dbReference type="KEGG" id="tne:Tneu_1799"/>
    <dbReference type="eggNOG" id="arCOG01542">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_501194_0_0_2"/>
    <dbReference type="OrthoDB" id="371891at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003954">
        <property type="term" value="F:NADH dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015990">
        <property type="term" value="P:electron transport coupled proton transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003945">
        <property type="entry name" value="NU5C-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42829">
        <property type="entry name" value="NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42829:SF2">
        <property type="entry name" value="NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01434">
        <property type="entry name" value="NADHDHGNASE5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="56"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="81"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="153"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="188"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="250"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="278"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="302"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="337"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="364"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="395"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="418"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="518"/>
            <end position="536"/>
        </location>
    </feature>
    <feature type="domain" description="NADH:quinone oxidoreductase/Mrp antiporter transmembrane" evidence="6">
        <location>
            <begin position="191"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="538" mass="57436" checksum="652436F773D9311E" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB52</accession>
    <name>B1YB52_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lysine biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1835</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351171.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB52"/>
    <dbReference type="STRING" id="444157.Tneu_1835"/>
    <dbReference type="GeneID" id="6164608"/>
    <dbReference type="KEGG" id="tne:Tneu_1835"/>
    <dbReference type="eggNOG" id="arCOG01588">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_195720_1_0_2"/>
    <dbReference type="OrthoDB" id="159847at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd13946">
        <property type="entry name" value="LysW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005906">
        <property type="entry name" value="LysW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40393:SF1">
        <property type="entry name" value="LYSINE BIOSYNTHESIS PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40393">
        <property type="entry name" value="LYSINE BIOSYNTHESIS PROTEIN-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21344">
        <property type="entry name" value="Zn_ribbon_LysW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="61" mass="6633" checksum="24C84C75D8B184EF" modified="2008-05-20" version="1">MAKQKLVVTCKVCGTEFELPEDVMDGEIASCPTCGARYIVRVKGGSVTLEEFKGDVEDYGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="95" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB70</accession>
    <name>B1YB70_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 10">NH(3)-dependent NAD(+) synthetase</fullName>
            <ecNumber evidence="8 10">6.3.1.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">nadE</name>
        <name evidence="12" type="ordered locus">Tneu_0248</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 10">
            <text>deamido-NAD(+) + NH4(+) + ATP = AMP + diphosphate + NAD(+) + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21188"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.1.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from deamido-NAD(+) (ammonia route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 9">Belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.1.5" evidence="8 10"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349622.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB70"/>
    <dbReference type="STRING" id="444157.Tneu_0248"/>
    <dbReference type="GeneID" id="6166135"/>
    <dbReference type="KEGG" id="tne:Tneu_0248"/>
    <dbReference type="eggNOG" id="arCOG00069">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059327_1_1_2"/>
    <dbReference type="OrthoDB" id="39312at2157"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00333"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003952">
        <property type="term" value="F:NAD+ synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008795">
        <property type="term" value="F:NAD+ synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD+ biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00553">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.620:FF:000106">
        <property type="entry name" value="Glutamine-dependent NAD(+) synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00193">
        <property type="entry name" value="NadE_ammonia_dep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003694">
        <property type="entry name" value="NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022926">
        <property type="entry name" value="NH(3)-dep_NAD(+)_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00552">
        <property type="entry name" value="nadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF010587">
        <property type="entry name" value="PRK13980.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23090:SF9">
        <property type="entry name" value="GLUTAMINE-DEPENDENT NAD(+) SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23090">
        <property type="entry name" value="NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 8 9" id="KW-0520">NAD</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD/GMP synthase" evidence="11">
        <location>
            <begin position="22"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="41"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="8">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="8">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="8">
        <location>
            <begin position="253"/>
            <end position="254"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="270" mass="29386" checksum="9A642E3569D4F90F" modified="2008-05-20" version="1">MAPFDLQTVINALDYQRAREIISSFVRSYVEGAGARGVVVGLSGGVDSTVTAALAVEALGPERVLGLFMPSRHTPPEDAADVAEVAKALGIRLITVDITPIVESFAKALPGYSESERVAVGNIMARVRMTILYYYANRDNLLVAGSGDRSELLLGYFTKYGDGGVDILPIGSLYKVQVREMARRLGFRRIAEKPSSPRLWQGHTAEGELGAPYEVLDVVLYAIYDRKMPLEEAKRAFGSVVDLVVARARANAHKLRPPPSPDLSQARRDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB83</accession>
    <name>B1YB83_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Initiation factor 2B related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0261</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eIF-2B alpha/beta/delta subunits family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349635.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB83"/>
    <dbReference type="STRING" id="444157.Tneu_0261"/>
    <dbReference type="GeneID" id="6165467"/>
    <dbReference type="KEGG" id="tne:Tneu_0261"/>
    <dbReference type="eggNOG" id="arCOG01125">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_085263_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10470">
        <property type="entry name" value="Translation initiation factor eif-2b, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000649">
        <property type="entry name" value="IF-2B-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042529">
        <property type="entry name" value="IF_2B-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01008">
        <property type="entry name" value="IF-2B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="NagB/RpiA/CoA transferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="283" mass="30909" checksum="80E7DD76C550271B" modified="2008-05-20" version="1">MHTTASPPAALRRPSAQLYIRLIYYVEELAREWVRGASWYLERAVDIVSKVADPLPTAERLRGVRPGMAPLDFLYLVLREAVSRGVDARAAAARVAAYAKEARDRLSRGVQSLRCMRRVATVSFSSAVERLLRGLGCVDVVYLAESRPGAEFAEAYAAYSRYAQVVPIPDAAVGAFDYDAAVVGLDGLYLDAAVNKVGTLPLLAAARWVGALTIAVFESYKAVPLMSPPPMRVAAEVAGHAVEVPLFDRVPHGLIDVYVTDLGLFTEAEPLRLYRLALEKVFM</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB90</accession>
    <name>PDXT_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pyridoxal 5'-phosphate synthase subunit PdxT</fullName>
            <ecNumber evidence="1">4.3.3.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Pdx2</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Pyridoxal 5'-phosphate synthase glutaminase subunit</fullName>
            <ecNumber evidence="1">3.5.1.2</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pdxT</name>
        <name type="ordered locus">Tneu_0268</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>aldehydo-D-ribose 5-phosphate + D-glyceraldehyde 3-phosphate + L-glutamine = pyridoxal 5'-phosphate + L-glutamate + phosphate + 3 H2O + H(+)</text>
            <dbReference type="Rhea" id="RHEA:31507"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58273"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
            <dbReference type="EC" id="4.3.3.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-glutamine + H2O = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="3.5.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; pyridoxal 5'-phosphate biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">In the presence of PdxS, forms a dodecamer of heterodimers. Only shows activity in the heterodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glutaminase PdxT/SNO family.</text>
    </comment>
    <dbReference type="EC" id="4.3.3.6" evidence="1"/>
    <dbReference type="EC" id="3.5.1.2" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349642.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB90"/>
    <dbReference type="SMR" id="B1YB90"/>
    <dbReference type="STRING" id="444157.Tneu_0268"/>
    <dbReference type="MEROPS" id="C26.A32"/>
    <dbReference type="GeneID" id="6165565"/>
    <dbReference type="KEGG" id="tne:Tneu_0268"/>
    <dbReference type="eggNOG" id="arCOG00034">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069674_2_0_2"/>
    <dbReference type="OrthoDB" id="26717at2157"/>
    <dbReference type="UniPathway" id="UPA00245"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903600">
        <property type="term" value="C:glutaminase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036381">
        <property type="term" value="F:pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006543">
        <property type="term" value="P:L-glutamine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042823">
        <property type="term" value="P:pyridoxal phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008614">
        <property type="term" value="P:pyridoxine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01749">
        <property type="entry name" value="GATase1_PB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01615">
        <property type="entry name" value="PdxT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002161">
        <property type="entry name" value="PdxT/SNO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021196">
        <property type="entry name" value="PdxT/SNO_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03800">
        <property type="entry name" value="PLP_synth_Pdx2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31559">
        <property type="entry name" value="PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31559:SF0">
        <property type="entry name" value="PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01174">
        <property type="entry name" value="SNO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005639">
        <property type="entry name" value="Glut_amidoT_SNO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="Class I glutamine amidotransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01236">
        <property type="entry name" value="PDXT_SNO_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51130">
        <property type="entry name" value="PDXT_SNO_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000185910" description="Pyridoxal 5'-phosphate synthase subunit PdxT">
        <location>
            <begin position="1"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="1">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="1">
        <location>
            <position position="186"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="52"/>
            <end position="54"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="143"/>
            <end position="144"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01615"/>
        </source>
    </evidence>
    <sequence length="202" mass="21660" checksum="26C3CDBE921A251D" modified="2008-05-20" version="1">MKAGVLALQGDVEEHIQAFRKAAQELGRSVEVVQVKRPQDLREIAVLAIPGGESTTIGALARRTGLLDALRDAIKGGLPTLGTCAGAIFLAKEVRDSVVGETKQPILGLMDIAVVRNAFGRQRESFEVDLREEGIGALKAVFIRAPAFTKAWGSARLAAPLKHPELGQIYAAAFQGHMVATAFHPELSTTAVHRYMLNLAKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB94</accession>
    <name>B1YB94_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Alpha,alpha-trehalose-phosphate synthase</fullName>
            <ecNumber evidence="5">2.4.1.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0273</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>D-glucose 6-phosphate + UDP-alpha-D-glucose = alpha,alpha-trehalose 6-phosphate + UDP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18889"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:58429"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="ChEBI" id="CHEBI:61548"/>
            <dbReference type="EC" id="2.4.1.15"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the trehalose phosphatase family.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.15" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349646.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB94"/>
    <dbReference type="CAZy" id="GT20">
        <property type="family name" value="Glycosyltransferase Family 20"/>
    </dbReference>
    <dbReference type="GeneID" id="6165632"/>
    <dbReference type="KEGG" id="tne:Tneu_0273"/>
    <dbReference type="eggNOG" id="arCOG02831">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002351_3_3_2"/>
    <dbReference type="OrthoDB" id="79955at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003825">
        <property type="term" value="F:alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004805">
        <property type="term" value="F:trehalose-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005992">
        <property type="term" value="P:trehalose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03788">
        <property type="entry name" value="GT20_TPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01627">
        <property type="entry name" value="HAD_TPP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1020">
        <property type="entry name" value="Trehalose-6-phosphate phosphatase related protein, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001830">
        <property type="entry name" value="Glyco_trans_20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006379">
        <property type="entry name" value="HAD-SF_hydro_IIB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012766">
        <property type="entry name" value="Trehalose_OtsA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003337">
        <property type="entry name" value="Trehalose_PPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01484">
        <property type="entry name" value="HAD-SF-IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF011071">
        <property type="entry name" value="PRK14501.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00685">
        <property type="entry name" value="T6PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02400">
        <property type="entry name" value="trehalose_OtsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10788:SF106">
        <property type="entry name" value="BCDNA.GH08860"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10788">
        <property type="entry name" value="TREHALOSE-6-PHOSPHATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00982">
        <property type="entry name" value="Glyco_transf_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02358">
        <property type="entry name" value="Trehalose_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00048039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="NCBIfam" id="TIGR02400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="737" mass="82625" checksum="4EC09BE20A6D5766" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB95</accession>
    <name>B1YB95_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl transferase group 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0274</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349647.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB95"/>
    <dbReference type="STRING" id="444157.Tneu_0274"/>
    <dbReference type="CAZy" id="GT4">
        <property type="family name" value="Glycosyltransferase Family 4"/>
    </dbReference>
    <dbReference type="GeneID" id="6165629"/>
    <dbReference type="KEGG" id="tne:Tneu_0274"/>
    <dbReference type="eggNOG" id="arCOG05497">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056884_0_0_2"/>
    <dbReference type="OrthoDB" id="132546at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03801">
        <property type="entry name" value="GT4_PimA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12526">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12526:SF630">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13579">
        <property type="entry name" value="Glyco_trans_4_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyltransferase subfamily 4-like N-terminal" evidence="2">
        <location>
            <begin position="18"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyl transferase family 1" evidence="1">
        <location>
            <begin position="231"/>
            <end position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="407" mass="44969" checksum="C9D32F7AC617504F" modified="2008-05-20" version="1">MNIAVVAQQSSRWEDLHRAATVLVKSFRRLGHKAWLVTSIYHEGRPVVDPRIVEKSENGYVEVEADVAGVPTIRVLSMKSLTPPGGVVLRSFGKILGALQERHSLDLVVVVASFWNGPEEAARWISIRRSLAELGEAPGRPLFVFVPAYFVKFTALRPVDSAAKLMWSMVNMPYIMRRADLVLVCCQAEAEELKQYGVPSGKVVESKSWVDPDFVEVKDVGRPKAAEGFDLYVSYVGSLDEERNIQTLIKAAERLSRIGNVALVAAGGGDALERARKEAKRRDNLVVLENPDLKTVVSVIKHSFVGVDFSRYEPMGIRALDYLYMGVPYAASPASRATWYISNGVDGIQLSHPDDVEGFTSWVSMLMKRPELRDEMAAKAMKKAEGLNALKLAELLLKAAEGRTTPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBA0</accession>
    <name>B1YBA0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP1 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0279</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349652.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBA0"/>
    <dbReference type="GeneID" id="6165687"/>
    <dbReference type="KEGG" id="tne:Tneu_0279"/>
    <dbReference type="eggNOG" id="arCOG03722">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115256_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.330">
        <property type="entry name" value="Nucleotidyltransferases domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010268">
        <property type="entry name" value="PaREP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34237:SF1">
        <property type="entry name" value="PAREP8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34237">
        <property type="entry name" value="PAREP8-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05942">
        <property type="entry name" value="PaREP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="185" mass="20837" checksum="FC82C29A84A226C9" modified="2008-05-20" version="1">MDIPDLEILRARGLDPLAVLHDAVAQGLDPPERVELYLRASEYFWEEGLRLIDAGDLRQGGEKIWNSVVQLVKAVAEARRWPHDTHRLVWAAVRRISQELGDREVVKLFAQVEQLHVNFYEGHLERWDVDVFVEAAKTLREKLGAARPPATPSINLLYQLSYSWGMATCISKGWGPLSTASAAAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBA8</accession>
    <name>B1YBA8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uroporphyrinogen III synthase HEM4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0287</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349660.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBA8"/>
    <dbReference type="STRING" id="444157.Tneu_0287"/>
    <dbReference type="GeneID" id="6165819"/>
    <dbReference type="KEGG" id="tne:Tneu_0287"/>
    <dbReference type="eggNOG" id="arCOG02049">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1178162_0_0_2"/>
    <dbReference type="OrthoDB" id="28740at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004852">
        <property type="term" value="F:uroporphyrinogen-III synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006780">
        <property type="term" value="P:uroporphyrinogen III biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10090">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036108">
        <property type="entry name" value="4pyrrol_syn_uPrphyn_synt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003754">
        <property type="entry name" value="4pyrrol_synth_uPrphyn_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039793">
        <property type="entry name" value="UROS/Hem4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40082">
        <property type="entry name" value="BLR5956 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40082:SF1">
        <property type="entry name" value="BLR5956 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02602">
        <property type="entry name" value="HEM4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69618">
        <property type="entry name" value="HemD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tetrapyrrole biosynthesis uroporphyrinogen III synthase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="236" mass="24519" checksum="D37F0960638F1BB4" modified="2008-05-20" version="1">MRLAVTSPRALEAFRALAARAGVEVVEAPMAVLKPAPLDAEAVVRALEEADLVVFASGHAAYRAAEALGPLRDAASRLLAKAVVATAEGRKGAVMVKNAFGVEPQVVSDTVEGLSLPGCRRAAVFHYGWRDPELLAKVACPAAEFQPYVAEPPPREAVERVLSADAVVFTSALAVRYFAEVGGAEAVERLKGLIVVAAGPGVSKALAELGVPHKTAPQGRIGPLAEYAISLLLSRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBH6</accession>
    <name>B1YBH6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cupin 2 conserved barrel domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1863</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351197.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBH6"/>
    <dbReference type="STRING" id="444157.Tneu_1863"/>
    <dbReference type="GeneID" id="6164833"/>
    <dbReference type="KEGG" id="tne:Tneu_1863"/>
    <dbReference type="eggNOG" id="arCOG02999">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_134269_0_0_2"/>
    <dbReference type="OrthoDB" id="114121at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd02238">
        <property type="entry name" value="cupin_KdgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="entry name" value="Jelly Rolls"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052535">
        <property type="entry name" value="Bacilysin_H2HPP_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025499">
        <property type="entry name" value="KdgF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40112">
        <property type="entry name" value="H2HPP ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40112:SF1">
        <property type="entry name" value="H2HPP ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029883">
        <property type="entry name" value="KdgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="RmlC-like cupins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin type-2" evidence="1">
        <location>
            <begin position="27"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="100" mass="11267" checksum="45B97054189CA37B" modified="2008-05-20" version="1">MTWRWERLSDCVERRYISGEGATVAQFKLKAGCVVQRHSHPNEQITVVLEGLLEFEVGGRRFTASQGDVVHIPPGVEHEAVALTDAVVVDVFAPPRRDWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBK1</accession>
    <name>B1YBK1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Periplasmic solute binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1888</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell envelope</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351222.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBK1"/>
    <dbReference type="STRING" id="444157.Tneu_1888"/>
    <dbReference type="GeneID" id="6164941"/>
    <dbReference type="KEGG" id="tne:Tneu_1888"/>
    <dbReference type="eggNOG" id="arCOG01005">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_870496_0_0_2"/>
    <dbReference type="OrthoDB" id="50488at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1980">
        <property type="entry name" value="Nitrogenase molybdenum iron protein domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050492">
        <property type="entry name" value="Bact_metal-bind_prot9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006127">
        <property type="entry name" value="ZnuA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42953">
        <property type="entry name" value="HIGH-AFFINITY ZINC UPTAKE SYSTEM PROTEIN ZNUA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42953:SF1">
        <property type="entry name" value="METAL-BINDING PROTEIN HI_0362-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01297">
        <property type="entry name" value="ZnuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53807">
        <property type="entry name" value="Helical backbone' metal receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="303"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="274"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="326" mass="35266" checksum="F75EA8146CB415B0" modified="2008-05-20" version="1">MAAKTLYLAAALLAIAAVAQTTTKIVVSFPAYNVVLSEAFPNADVVLITKGASDPHEYQLTAEDLQMLSSLTPRDVVVLSMHAPFEQKIAEMARDGQIKAKVIDLTKIQQYLTYDNGAVNPHDHGIYPPNVLRLVAAVANATGLRPDLAFLQKLRELNSTYCCRFSGKAVALTPTAQYILYWLGYRDIAVLIKEPGVPPTPQDLQKALQYAKEGAPVLAAVVRGEALRIVDQFRQKAQEAGINPNIITADFSKNYIQTLEAAVRQIAAAQTPTATETTAKQTTQQNTEATQTAHTAAGPEPTIPIAVAATAIVLLAVLLLLRWKKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBL7</accession>
    <name>B1YBL7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Amidophosphoribosyltransferase</fullName>
            <ecNumber evidence="4">2.4.2.14</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1904</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.4.2.14" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351238.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBL7"/>
    <dbReference type="STRING" id="444157.Tneu_1904"/>
    <dbReference type="GeneID" id="6164897"/>
    <dbReference type="KEGG" id="tne:Tneu_1904"/>
    <dbReference type="eggNOG" id="arCOG00094">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022389_3_0_2"/>
    <dbReference type="OrthoDB" id="5976at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004044">
        <property type="term" value="F:amidophosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRTase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11907">
        <property type="entry name" value="AMIDOPHOSPHORIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="PRTase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phosphoribosyltransferase" evidence="3">
        <location>
            <begin position="191"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="372" mass="39910" checksum="660F132AC094F473" modified="2008-05-20" version="1">MSAGLFAIYSFGGSVELWSMVYYGLRALANRGDFAEAYVYNGGVERVEVDLSREVERSLRGSAAVGCVSPNGGCCREVENGVRCSTWDGETYVELRRDGVVVAKRGGSLWHLALGAHGFDYAIVSTESAAIEILGGEVRRSLQPGEAVEIGELYVRSRGGGPRGPLCALEFIYTARPDSRIDGVEVASVRGRIAGELAKKIGYTPDVVVGIPETGSYYAAHIAAALGKPYLPAFVATARGRSALLDEVRDRMAVIQLKANVIESAVRGKRVLLVDDSMISGITIKLVAQMLRQKAGALEVYVAVVAPPLRRACPYGVKMPPESHMIYNAVPPDVVKDVLEVDGIVHLSPEELEEALRGAGVAVCTLCMRPKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBP2</accession>
    <name>B1YBP2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ribonuclease VapC</fullName>
            <shortName evidence="5">RNase VapC</shortName>
            <ecNumber evidence="5">3.1.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Putative toxin VapC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">vapC</name>
        <name evidence="7" type="ordered locus">Tneu_1929</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Toxic component of a toxin-antitoxin (TA) system. An RNase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PINc/VapC protein family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351263.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBP2"/>
    <dbReference type="STRING" id="444157.Tneu_1929"/>
    <dbReference type="GeneID" id="6165039"/>
    <dbReference type="KEGG" id="tne:Tneu_1929"/>
    <dbReference type="eggNOG" id="arCOG00721">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_163114_0_0_2"/>
    <dbReference type="OrthoDB" id="27944at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:RNA nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1010">
        <property type="entry name" value="5'-nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00265">
        <property type="entry name" value="VapC_Nob1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033411">
        <property type="entry name" value="Ribonuclease_PIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022907">
        <property type="entry name" value="VapC_family"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39550">
        <property type="entry name" value="SLL0658 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39550:SF1">
        <property type="entry name" value="SLL0658 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17146">
        <property type="entry name" value="PIN_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00670">
        <property type="entry name" value="PINc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="PIN domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0800">Toxin</keyword>
    <keyword evidence="1 5" id="KW-1277">Toxin-antitoxin system</keyword>
    <feature type="domain" description="PIN" evidence="6">
        <location>
            <begin position="2"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="114" mass="12738" checksum="AFEF402E9701F684" modified="2008-05-20" version="1">MSCYVLDASAFIHGRDMRIFSGALYTTREAAEELRDPRAQAALEILRVEVAEVDERRVKELLKRFAGLSRADASLLALALERGCVLVTDDGRLAAAARALGVRVEGVFYRRERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBQ1</accession>
    <name>B1YBQ1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ASCH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1938</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351272.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBQ1"/>
    <dbReference type="STRING" id="444157.Tneu_1938"/>
    <dbReference type="GeneID" id="6165379"/>
    <dbReference type="KEGG" id="tne:Tneu_1938"/>
    <dbReference type="eggNOG" id="arCOG00400">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2010178_0_0_2"/>
    <dbReference type="OrthoDB" id="31314at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd06552">
        <property type="entry name" value="ASCH_yqfb_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.30">
        <property type="entry name" value="Hypothetical protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007374">
        <property type="entry name" value="ASCH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42250">
        <property type="entry name" value="ASCH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42250:SF1">
        <property type="entry name" value="ASCH DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04266">
        <property type="entry name" value="ASCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01022">
        <property type="entry name" value="ASCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="PUA domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ASCH" evidence="1">
        <location>
            <begin position="11"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="124" mass="14388" checksum="AF3B9B17185426DD" modified="2008-05-20" version="1">MVREVDLGPYLRFKQKYLEGVLSGRKRVTVRHGIVRPRFNLVYIVCCGEIYAEAFITKVYYTRLGKLGEDVAAAEGMESREELIAELKEIYGDVGEDDTVSVIYFAVVRRYERPVPLERMRKSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBR8</accession>
    <name>B1YBR8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0352</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349722.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBR8"/>
    <dbReference type="STRING" id="444157.Tneu_0352"/>
    <dbReference type="GeneID" id="6166077"/>
    <dbReference type="KEGG" id="tne:Tneu_0352"/>
    <dbReference type="eggNOG" id="arCOG04037">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1399808_0_0_2"/>
    <dbReference type="OrthoDB" id="373177at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="175" mass="19843" checksum="A92E3185238DA0F1" modified="2008-05-20" version="1">MLGLIRYFWQDLTPPLPEGWRPVLKRYVERWPKPLTPYAVAKEVELSTSAVYRAVYALAKNRLILPAGRGYQATVKGAIALLVEEEDPRWLDAVRKIWGVGLGDTAATFYLAALGAAIQKLSFTIREAYICDWVASQAYIITQLDRLRLPPAVEETIRPLLKFPEGTHHSCSRYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBW0</accession>
    <name>B1YBW0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0396</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBW0"/>
    <dbReference type="STRING" id="444157.Tneu_0396"/>
    <dbReference type="KEGG" id="tne:Tneu_0396"/>
    <dbReference type="eggNOG" id="arCOG09835">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1178165_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="228" mass="25331" checksum="03C168615243DC62" modified="2008-05-20" version="1">MLCGGIPLRYEGGDGEVKNSAYRLAESGGTVEVEIDGAVVSLKEAVVICGVGDSRVRPGIYLIDVARRWGLPKLLGRLLRRGVPPDRAIDRIDRKLAATAALNQEPLSKIRLGGDEPHVAYYSAKWIAGALEGILFFGWRGDGGIYEYEPLYFRYRDGEVKEVYIRLHYIPARIPPAVVALRDPFNPKNHFLFPAPGGKPIDRFNVSFGLPREPPEKKVVGYIFKIPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBY2</accession>
    <name>B1YBY2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Phosphoenolpyruvate carboxylase</fullName>
            <shortName evidence="4">PEPC</shortName>
            <shortName evidence="4">PEPCase</shortName>
            <ecNumber evidence="4 5">4.1.1.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ppcA</name>
        <name evidence="6" type="ordered locus">Tneu_0418</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the irreversible beta-carboxylation of phosphoenolpyruvate (PEP) to form oxaloacetate (OAA), a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>oxaloacetate + phosphate = phosphoenolpyruvate + hydrogencarbonate</text>
            <dbReference type="Rhea" id="RHEA:28370"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="EC" id="4.1.1.31"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the PEPCase type 2 family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.31" evidence="4 5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349786.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBY2"/>
    <dbReference type="STRING" id="444157.Tneu_0418"/>
    <dbReference type="GeneID" id="6166163"/>
    <dbReference type="KEGG" id="tne:Tneu_0418"/>
    <dbReference type="eggNOG" id="arCOG04435">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_517433_0_0_2"/>
    <dbReference type="OrthoDB" id="85849at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008964">
        <property type="term" value="F:phosphoenolpyruvate carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015977">
        <property type="term" value="P:carbon fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006107">
        <property type="term" value="P:oxaloacetate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01904">
        <property type="entry name" value="PEPcase_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007566">
        <property type="entry name" value="PEP_COase_arc-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_kinase-like_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02751">
        <property type="entry name" value="PEPCase_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14010">
        <property type="entry name" value="PEPcase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006677">
        <property type="entry name" value="UCP006677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="Phosphoenolpyruvate/pyruvate domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0120">Carbon dioxide fixation</keyword>
    <keyword evidence="2 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="1 4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="NCBIfam" id="TIGR02751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="461" mass="51578" checksum="17A0060505EDE2D8" modified="2008-05-20" version="1">MIPRLMCTQHPDATVKVTASEEVDEAIVAYTAYGCDEVMIDYEGKTTPYAQPKDITVKAHDSGLPLGEKFYLTPRMPNPRLEEFERSMLTLEAAILANYFSAKLTGRQAIRWVVLPMVADVETLGLVYRMLIHKTEAYTRETGVKLEPPELIPLIEDAVAQLKADELIGGLLKQMSQPPRYLRLFLGKSDSAVKHGHIASALAIVATLSKVKAVERELGVKIYPILGMGSPPFRGAINNPTLSHLEVIQYAGYYTATIQSAVRYDTSYDEYTRVRESILNACCLPSRDIDTPEVEGLITKASSTYRSLIVKYAERVVQVARLVPGTRDRVSWAVYGRNITAEDRVVNMPRAIVYTSTWYAMGLPPIFLDAPTVVELAKSDQLDVVLRALPTLKREWEYDAQFFDPQTAAKYTSEELVKTVQEAMDYLGINARASGTYLSLLRMNRNESNILAMGKFRKFLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="91" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBY5</accession>
    <name>B1YBY5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Aldehyde Dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0421</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349789.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBY5"/>
    <dbReference type="STRING" id="444157.Tneu_0421"/>
    <dbReference type="GeneID" id="6166206"/>
    <dbReference type="KEGG" id="tne:Tneu_0421"/>
    <dbReference type="eggNOG" id="arCOG01252">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005391_5_3_2"/>
    <dbReference type="OrthoDB" id="6342at2157"/>
    <dbReference type="BioCyc" id="MetaCyc:MONOMER-17243"/>
    <dbReference type="BRENDA" id="1.2.1.76">
        <property type="organism ID" value="6328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.309.10:FF:000009">
        <property type="entry name" value="Aldehyde dehydrogenase A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.605.10:FF:000007">
        <property type="entry name" value="NAD/NADP-dependent betaine aldehyde dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="entry name" value="Aldehyde Dehydrogenase, Chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="entry name" value="Aldehyde Dehydrogenase, Chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11699">
        <property type="entry name" value="ALDEHYDE DEHYDROGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="ALDH-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldehyde dehydrogenase" evidence="4">
        <location>
            <begin position="5"/>
            <end position="464"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="469" mass="50742" checksum="AC99A6F3BC95191A" modified="2008-05-20" version="1">MTNLVVVNPATEEAIAELPQATREDVRRAIDAAWDAFASWSALPLRKRTRVLLKTAELAEAAREDLLKTLVAESGKPIRDAEAEITRAIDIFRSSAEEAKLILEGSAPRVDAYEYPIGNENRLVVAVREPVGVVGGALSYNNPASTFAHKVAPVIAAGNTVVVKPSSYTPLTALKFLEIMKRAGVPEGVVNVVVGSGEEVFDELIQSDKVAGINFTGSTAVGLQVAAKAASRGKKFMIAPGGSDPAVVFKDADLDAAARIVARARYENAGQNCNATKRVFVEREVYPRFVELLLGYVKAIRVGDPMDYSTDMGPLISEKIVKAMDGVVKDALEKGAKLAAGGRRMNRRGYFYEPTVLLFDGDAEAKALREEVFGPVLPVVPFEGEEEAVRLANATQYGLQSAVFTSDYRKALRVARGIKAGAVMINESTRVRFDALPYGGVKMSGFGWREGVRSTMIYYTEPKFLVFGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBZ6</accession>
    <name>B1YBZ6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">WD-40 repeat protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0432</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349800.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBZ6"/>
    <dbReference type="GeneID" id="6166021"/>
    <dbReference type="KEGG" id="tne:Tneu_0432"/>
    <dbReference type="HOGENOM" id="CLU_833191_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82171">
        <property type="entry name" value="DPP6 N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="325" mass="35069" checksum="D56F4B24E04D0817" modified="2008-05-20" version="1">MRLAVKWRAPVCGRALARWSPRGGLLALICESLDRRDNYMVAAYSEQGIALWRQEFYSVVDAAFSPDGRRLGVLREGGELEILDAESGARQKTVDLSRFMWQHKLGTVFDAASVSWSSGGVIGGVSYDDKVLFVEAKPGGSGGSEEVFRALWAWRVETSASSGGTGVPLLRFSPADANLAAVGTRSGELIYVNLASKSIQRIPATVRFLEWSPDGRWLVVGGSETLRLYDSHGRIAGSAAVSADAAVWISEDALLVSGAAFTVYSLKGDSLRPVRHTVARAPRCDCAEGVAHMAYSRADKALAVVYRIERFGRLCVYSLDGTVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC54</accession>
    <name>B1YC54_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Diadenosine 5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1993</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351327.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC54"/>
    <dbReference type="STRING" id="444157.Tneu_1993"/>
    <dbReference type="GeneID" id="6165701"/>
    <dbReference type="KEGG" id="tne:Tneu_1993"/>
    <dbReference type="eggNOG" id="arCOG01078">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037162_14_4_2"/>
    <dbReference type="OrthoDB" id="25379at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004081">
        <property type="term" value="F:bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006167">
        <property type="term" value="P:AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006754">
        <property type="term" value="P:ATP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03428">
        <property type="entry name" value="NUDIX_Ap4A_Nudt2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.79.10">
        <property type="entry name" value="Nucleoside Triphosphate Pyrophosphohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051325">
        <property type="entry name" value="Nudix_hydrolase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003565">
        <property type="entry name" value="Tetra_PHTase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21340:SF0">
        <property type="entry name" value="BIS(5'-NUCLEOSYL)-TETRAPHOSPHATASE [ASYMMETRICAL]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21340">
        <property type="entry name" value="DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="Nudix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="6">
        <location>
            <begin position="3"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00018911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00032644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="142" mass="16671" checksum="B811DC8B28758BAF" modified="2008-05-20" version="1">MRFYERSAGAVVYAIDGGEVLYLLLHGRYGWDFPHGLVRLRETDKAAALREIAEETGLKVELIPSFKEEIRYKYSKKGRTVYREVVYFLARSYGLNVTLSQEHDAYMWVDRDRAMKMVSRDETRAVLLKAWRKIVEMEKLAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC66</accession>
    <name>B1YC66_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_2006</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351339.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC66"/>
    <dbReference type="STRING" id="444157.Tneu_2006"/>
    <dbReference type="GeneID" id="6165419"/>
    <dbReference type="KEGG" id="tne:Tneu_2006"/>
    <dbReference type="eggNOG" id="arCOG05451">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2730566_0_0_2"/>
    <dbReference type="OrthoDB" id="28190at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="66" mass="7611" checksum="3791D1CDC9F040A8" modified="2008-05-20" version="1">MGTCTVVWRGEKYRVECSPSHLLSVATKIAEAECIPYFEVYRWLLTALDGRYRTTADVVNRLLTEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC70</accession>
    <name>B1YC70_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PAE0736-like N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_2010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351343.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC70"/>
    <dbReference type="STRING" id="444157.Tneu_2010"/>
    <dbReference type="GeneID" id="6165653"/>
    <dbReference type="KEGG" id="tne:Tneu_2010"/>
    <dbReference type="eggNOG" id="arCOG07001">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2340347_0_0_2"/>
    <dbReference type="OrthoDB" id="27035at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1650">
        <property type="entry name" value="PDO, CxxC motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021540">
        <property type="entry name" value="PAE0736-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11424">
        <property type="entry name" value="DUF3195"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143437">
        <property type="entry name" value="THUMP domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAE0736-like N-terminal" evidence="1">
        <location>
            <begin position="4"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11424"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="98" mass="11263" checksum="F3CBF85936A7584D" modified="2008-05-20" version="1">MRRHFIVYTTSKKEAVVARDLCDCLYYYDSGVMCEALAPSRVYVHTEAEYLERCLGMRYFKALVKGVEAFDDVSRQRPSCAGCRVVEVGGRYFISWGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC71</accession>
    <name>B1YC71_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0436</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349804.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC71"/>
    <dbReference type="STRING" id="444157.Tneu_0436"/>
    <dbReference type="GeneID" id="6166089"/>
    <dbReference type="KEGG" id="tne:Tneu_0436"/>
    <dbReference type="eggNOG" id="arCOG05472">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_106322_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="144" mass="16168" checksum="E7843F6EC0869684" modified="2008-05-20" version="1">MELYSGGVYRTGDVDFVLDTHSPQTALEVFTALANAAGWRRVSRVWEGPSPLYLDLVGFEYLGRVKELRACGSRLYVQSPEDSVVSTLAACVWRNSPADCERAAAVLAAQWEQIDWGYLRERAEKEEVLEKLMELADKVARLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC77</accession>
    <name>B1YC77_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator/antitoxin, MazE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0442</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC77"/>
    <dbReference type="KEGG" id="tne:Tneu_0442"/>
    <dbReference type="eggNOG" id="arCOG00825">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_158484_6_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01439">
        <property type="entry name" value="lp_hng_hel_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04014">
        <property type="entry name" value="MazE_antitoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00966">
        <property type="entry name" value="SpoVT_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="AbrB/MazE/MraZ-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51740">
        <property type="entry name" value="SPOVT_ABRB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="1">
        <location>
            <begin position="8"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="87" mass="9477" checksum="79D912B483574371" modified="2008-05-20" version="1">MARRGASRAVLRVYKKGVVVLPKALREEAGIKEGEEVVAEVVGGAIVIRPLKPRVVDVSPEEVEEAVEEEKGEWDRRLDALGKEAGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC87</accession>
    <name>B1YC87_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0453</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349820.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC87"/>
    <dbReference type="STRING" id="444157.Tneu_0453"/>
    <dbReference type="GeneID" id="6165967"/>
    <dbReference type="KEGG" id="tne:Tneu_0453"/>
    <dbReference type="eggNOG" id="arCOG07422">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1801766_0_0_2"/>
    <dbReference type="OrthoDB" id="25821at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="143" mass="15900" checksum="4E8E2BE475732607" modified="2008-05-20" version="1">MSTEFSWHAIAVGNRVLGLYNFLVLSAPPTWRIVVMPMASDVFKHREVDGVKWVRDGEVMHFVRDGGRAYVLKIKARPGRRVGKGEPITVGGHQGVYRTSKGRGGLRLAVEFYCDVTDRTLTVELEGLDGLDVLNYIGGSRCH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCA6</accession>
    <name>B1YCA6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PaREP1 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0472</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349839.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCA6"/>
    <dbReference type="STRING" id="444157.Tneu_0472"/>
    <dbReference type="GeneID" id="6165997"/>
    <dbReference type="KEGG" id="tne:Tneu_0472"/>
    <dbReference type="eggNOG" id="arCOG03722">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115256_4_0_2"/>
    <dbReference type="OrthoDB" id="28404at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.330">
        <property type="entry name" value="Nucleotidyltransferases domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010268">
        <property type="entry name" value="PaREP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34237:SF1">
        <property type="entry name" value="PAREP8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34237">
        <property type="entry name" value="PAREP8-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05942">
        <property type="entry name" value="PaREP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="40"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="162" mass="18585" checksum="008142BCC7824957" modified="2008-05-20" version="1">MSALTLPRNIAERVREEARRLGMSVEEYLVDLLTQGLDPRSRAEEYINAARDLLEQAREELERGDVRQAAEKLWGAAALAVKAYAAWREGRRLASHGELWEYSTVLRRDLGRWAADAWNAGNAMHTCFYEGWCRKEHVEDAIEEVGKLVREVETRIKTGQTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCB5</accession>
    <name>B1YCB5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amine oxidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0481</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCB5"/>
    <dbReference type="STRING" id="444157.Tneu_0481"/>
    <dbReference type="KEGG" id="tne:Tneu_0481"/>
    <dbReference type="eggNOG" id="arCOG01522">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026719_2_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008767">
        <property type="term" value="F:UDP-galactopyranose mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21197">
        <property type="entry name" value="UDP-GALACTOPYRANOSE MUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21197:SF0">
        <property type="entry name" value="UDP-GALACTOPYRANOSE MUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amine oxidase" evidence="1">
        <location>
            <begin position="222"/>
            <end position="441"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="450" mass="50772" checksum="DBDE9033BBC9DE83" modified="2008-05-20" version="1">MLINSLEFFGVVRCIILGGGFTGVLIAGNLRGCLVLEKSTYDRRGGLLRTEIIHGFAFDIGGTHIIYSRDGEALSGLLSLVDGVVRGVRRAFVYFRGRFVPYPFENGLWVLEPGDRAEALVSFMETWMGRSGEWRPSNLREWVYGFFGRWLADNYLAPYNEKIWKRPLEEIDVDWVYIPGRLPVPDWRDVARSAAGVETVGYREQSVFYYPASGGIQALYDGALKRALASGSEVAWGVEVRELRRVGGRWVVNGRYEAEVVVATIPLPRLVEAVASPTPPEEVYRAVGRLDWNAVAVVGVALEGPAPDQHWVYVPDRGVVFHRYAWISNYSPANAPPGRSAVIAEVTIPKGRPVDLEKIKGEVLEGFERLGILEGRRVLFTEAWLHPFGYPVYTRGHREAREVVQRWLEEVGIFTAGRWGAWHYWNMDKVYTNAKQTAEKIEKIKLGEIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="42" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCB7</accession>
    <name>B1YCB7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0483</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCB7"/>
    <dbReference type="STRING" id="444157.Tneu_0483"/>
    <dbReference type="KEGG" id="tne:Tneu_0483"/>
    <dbReference type="HOGENOM" id="CLU_2366328_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="95" mass="10371" checksum="F248DB51BDE74833" modified="2008-05-20" version="1">MPLVDDLRYIGSAELKPNGFFSLVGVSVISISKLGVGVLEAYWVSVFLTIFTFTLTIIAILRSMDVRHVYLGTFLAIFIPNLSLILFLAAYGPSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCF7</accession>
    <name>B1YCF7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0527</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349890.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCF7"/>
    <dbReference type="STRING" id="444157.Tneu_0527"/>
    <dbReference type="GeneID" id="6165747"/>
    <dbReference type="KEGG" id="tne:Tneu_0527"/>
    <dbReference type="eggNOG" id="arCOG04015">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_183486_0_0_2"/>
    <dbReference type="OrthoDB" id="28420at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="77" mass="8096" checksum="655D0BC53BADEE2C" modified="2008-05-20" version="1">MYNLKTLLVARDGVVVLPEAYRGVRLEEAVGEVCGVCLVLRGAGRAYVFSSFTIKMGVGNLAKLVAEVCGGSVQPPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCI9</accession>
    <name>B1YCI9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0560</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349922.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCI9"/>
    <dbReference type="GeneID" id="6165882"/>
    <dbReference type="KEGG" id="tne:Tneu_0560"/>
    <dbReference type="eggNOG" id="arCOG05421">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1987701_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="121" mass="13914" checksum="2D9AD352423163E8" modified="2008-05-20" version="1">MYLYFGRVRVGPLVGYLWLLGRRLYLKRSWRPRDTVYLGSVDDLLGVAVRVRRLVPRPLPVRQLVAALVDALKKAYYVASRCRDSPRWKIRAWEAAMAIEYAASALAMYWPSAAKKILDDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCK9</accession>
    <name>B1YCK9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0580</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCK9"/>
    <dbReference type="KEGG" id="tne:Tneu_0580"/>
    <dbReference type="eggNOG" id="arCOG07832">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114821_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11700">
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="158" mass="18049" checksum="038476E6DF82EE25" modified="2008-05-20" version="1">MEEVRLYARRAALEEASLNPEDFWKCVGDAAELFSERGSEYCLDIGGGVRALSLCLYTAALLAVRLWNTKIEAVYTMAEHAERIVQIDLMPILYVNELTRSNANARRRILEELAEGPLEDLGRYDKKILKEFTKHGLLNNDKLTEAGKTLLKYIQRRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCL9</accession>
    <name>B1YCL9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, CopG family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0593</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349952.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCL9"/>
    <dbReference type="STRING" id="444157.Tneu_0593"/>
    <dbReference type="GeneID" id="6165552"/>
    <dbReference type="KEGG" id="tne:Tneu_0593"/>
    <dbReference type="eggNOG" id="arCOG01009">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_172284_0_0_2"/>
    <dbReference type="OrthoDB" id="56938at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22231">
        <property type="entry name" value="RHH_NikR_HicB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="entry name" value="Met repressor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002145">
        <property type="entry name" value="CopG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36215">
        <property type="entry name" value="BLL4998 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36215:SF1">
        <property type="entry name" value="BLL4998 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01402">
        <property type="entry name" value="RHH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="Ribbon-helix-helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ribbon-helix-helix protein CopG" evidence="1">
        <location>
            <begin position="13"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="76" mass="8905" checksum="2A451569EA8329B0" modified="2008-05-20" version="1">MPRSKSQDKMSLISVHVPKKMLEELDDLVRRGIFPNRSEAIRAALRDLLYREVFKAKPPREEEKEEDIPAAFIRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCM3</accession>
    <name>B1YCM3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0597</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCM3"/>
    <dbReference type="KEGG" id="tne:Tneu_0597"/>
    <dbReference type="eggNOG" id="arCOG05504">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2327360_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="101" mass="11036" checksum="86B256198ABF6C12" modified="2008-05-20" version="1">MDAVKWTLYAILYLIGVLTLGLLLMGAEKMAAAALDLVFLVIAVVLFRLALKDVSAALDIASEDRERAEYRMMQVILIATFLIAAGVLGYGFLKALFPFIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCN5</accession>
    <name>B1YCN5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator, CopG family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0609</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349968.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCN5"/>
    <dbReference type="STRING" id="444157.Tneu_0609"/>
    <dbReference type="GeneID" id="6165499"/>
    <dbReference type="KEGG" id="tne:Tneu_0609"/>
    <dbReference type="eggNOG" id="arCOG01012">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2550403_0_0_2"/>
    <dbReference type="OrthoDB" id="25654at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22231">
        <property type="entry name" value="RHH_NikR_HicB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="entry name" value="Met repressor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36215">
        <property type="entry name" value="BLL4998 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36215:SF1">
        <property type="entry name" value="BLL4998 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="Ribbon-helix-helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="71" mass="8467" checksum="79E53007C9761898" modified="2008-05-20" version="1">MGRRRSKVPLERIAIRFPSELLMRMDKLVERGVFKNRSHLVKAAIEELLRDPKYQEALRDKDEDFPAMRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCN8</accession>
    <name>B1YCN8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0612</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCN8"/>
    <dbReference type="STRING" id="444157.Tneu_0612"/>
    <dbReference type="KEGG" id="tne:Tneu_0612"/>
    <dbReference type="eggNOG" id="arCOG05508">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1412411_0_0_2"/>
    <dbReference type="OrthoDB" id="28217at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="194" mass="21625" checksum="DF5744F52CE381FF" modified="2008-05-20" version="1">MLIKAAEVREAYVQGLVQRRVKYRIDLDREMPIEAWVARYGSEVAKTLEERWGATFCPSGVLPTLGLLLVHWRGGHLLADVSLCAPVSHPSPPPAALRAPVRRIDICVEPVAPLVPPAGYVTLHTPGVKMLGRITLRRNYAVVKHRGLLFVTAASYSPEERGGVALRLAWYLCHSYDVGKAFRKIRAVLRSRAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="92" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCP2</accession>
    <name>B1YCP2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 7">Triosephosphate isomerase</fullName>
            <shortName evidence="7">TIM</shortName>
            <shortName evidence="7">TPI</shortName>
            <ecNumber evidence="7">5.3.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Triose-phosphate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tpiA</name>
        <name evidence="8" type="ordered locus">Tneu_0616</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>D-glyceraldehyde 3-phosphate = dihydroxyacetone phosphate</text>
            <dbReference type="Rhea" id="RHEA:18585"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="5.3.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate from glycerone phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 7">Homotetramer; dimer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the triosephosphate isomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.1" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349975.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCP2"/>
    <dbReference type="STRING" id="444157.Tneu_0616"/>
    <dbReference type="GeneID" id="6165405"/>
    <dbReference type="KEGG" id="tne:Tneu_0616"/>
    <dbReference type="eggNOG" id="arCOG01087">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_104921_0_0_2"/>
    <dbReference type="OrthoDB" id="9465at2157"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00189"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004807">
        <property type="term" value="F:triose-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00311">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.70:FF:000223">
        <property type="entry name" value="Triosephosphate isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00147_A">
        <property type="entry name" value="TIM_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035990">
        <property type="entry name" value="TIM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000652">
        <property type="entry name" value="Triosephosphate_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022891">
        <property type="entry name" value="Triosephosphate_isomerase_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020861">
        <property type="entry name" value="Triosephosphate_isomerase_AS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003302">
        <property type="entry name" value="PRK04302.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00419">
        <property type="entry name" value="tim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00121">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51351">
        <property type="entry name" value="Triosephosphate isomerase (TIM)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00171">
        <property type="entry name" value="TIM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51440">
        <property type="entry name" value="TIM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="4 7" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5 7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Electrophile" evidence="7">
        <location>
            <position position="93"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="9"/>
            <end position="11"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="202"/>
            <end position="203"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00019397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00044762"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="224" mass="23146" checksum="FEEF33BC97B00817" modified="2008-05-20" version="1">MRLPILIINFKAYAEAAGRRALEIAKAAERAARELGVNIAVAPNHLELALVAQSVDIPVYAQGADVETPGAHTAHVAVDNVKEAGAAGLILNHSEAPLALSQLSRLAARAKAVGLDLVICAPDPDTSLAAAALKPHAVAVEPPELIGTGRAVSRYKPEAVVQTVEKVSRHFPDVAVITGAGIESGEDVAAALKLGTRGVLLASAAVKAKDHYQKILELAKPLAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCR6</accession>
    <name>B1YCR6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Twin-arginine translocation protein, TatA/E family subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_0640</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349999.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCR6"/>
    <dbReference type="STRING" id="444157.Tneu_0640"/>
    <dbReference type="GeneID" id="6165366"/>
    <dbReference type="KEGG" id="tne:Tneu_0640"/>
    <dbReference type="eggNOG" id="arCOG02694">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086034_3_2_2"/>
    <dbReference type="OrthoDB" id="28476at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043953">
        <property type="term" value="P:protein transport by the Tat complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.3310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003369">
        <property type="entry name" value="TatA/B/E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006312">
        <property type="entry name" value="TatA/E"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01411">
        <property type="entry name" value="tatAE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42982">
        <property type="entry name" value="SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42982:SF1">
        <property type="entry name" value="SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02416">
        <property type="entry name" value="TatA_B_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="100" mass="11273" checksum="C1B4AC350585E25F" modified="2008-05-20" version="1">MYLILAGQEWLIVLIAIVIILIWGPSKLPSLARGMGEAIREFRKAASGIEEEPRRTEKKEEIDQKIVEMAKSLGIQTEGKTKEQLLDEINKKLAELKKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCS0</accession>
    <name>B1YCS0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0644</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350003.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCS0"/>
    <dbReference type="STRING" id="444157.Tneu_0644"/>
    <dbReference type="GeneID" id="6165220"/>
    <dbReference type="KEGG" id="tne:Tneu_0644"/>
    <dbReference type="eggNOG" id="arCOG00130">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059688_0_0_2"/>
    <dbReference type="OrthoDB" id="200998at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43271">
        <property type="entry name" value="BLL2771 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43271:SF2">
        <property type="entry name" value="BLL2771 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="40"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="70"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="95"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="131"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="158"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="189"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="222"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="254"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="279"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="310"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="338"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily (MFS) profile" evidence="5">
        <location>
            <begin position="1"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="362" mass="37526" checksum="29B23969C409D1AC" modified="2008-05-20" version="1">MLNLFLLVLLSRGVYALMWFYIAPLLPAMLRDYGVDPAYAGLLPAAFVVGAALMQLPASYLGARYGHNKVAGFGMVLFGVSSVLMALAPSWGWALAFRALGGVGAGLFFSTAGAVLVALSPSSVGSALGWYGASFNLGGFVGFYWGAVASVLGWRPALALPGLLSAALGVALVRHGAVKSRPSLEWRAAAYGLASFPFWGAVYAANNLAATWLHLYRGVGEWAAGAVSSASMLSGLLGGLTGRLYDAGGRGRSALLAAASTASIAFLAMPWAPLEAVPLLAFLYGLSFSTYMTGVYAASSRAAQNPASALAVINVTNMALGLHVSYLFSWLMAQSPDYPWLFLASLALASAVATYAVVVRAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="94" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCV3</accession>
    <name>B1YCV3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 11">Isoleucine--tRNA ligase</fullName>
            <ecNumber evidence="1 11">6.1.1.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Tneu_0677</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>tRNA(Ile) + L-isoleucine + ATP = L-isoleucyl-tRNA(Ile) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:9666"/>
            <dbReference type="Rhea" id="RHEA-COMP:9695"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58045"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78528"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.5"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.5" evidence="1 11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350036.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCV3"/>
    <dbReference type="STRING" id="444157.Tneu_0677"/>
    <dbReference type="GeneID" id="6165322"/>
    <dbReference type="KEGG" id="tne:Tneu_0677"/>
    <dbReference type="eggNOG" id="arCOG00807">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001493_1_1_2"/>
    <dbReference type="OrthoDB" id="30823at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004822">
        <property type="term" value="F:isoleucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006428">
        <property type="term" value="P:isoleucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07961">
        <property type="entry name" value="Anticodon_Ia_Ile_ABEc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00818">
        <property type="entry name" value="IleRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.620:FF:000075">
        <property type="entry name" value="Isoleucine--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.730.10">
        <property type="entry name" value="Isoleucyl-tRNA Synthetase, Domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033709">
        <property type="entry name" value="Anticodon_Ile_ABEc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002301">
        <property type="entry name" value="Ile-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023586">
        <property type="entry name" value="Ile-tRNA-ligase_type2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00392">
        <property type="entry name" value="ileS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42780:SF1">
        <property type="entry name" value="ISOLEUCINE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42780">
        <property type="entry name" value="SOLEUCYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19302">
        <property type="entry name" value="DUF5915"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00984">
        <property type="entry name" value="TRNASYNTHILE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="ValRS/IleRS/LeuRS editing domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 12" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="7 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 12" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 12" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Aminoacyl-tRNA synthetase class Ia" evidence="13">
        <location>
            <begin position="21"/>
            <end position="639"/>
        </location>
    </feature>
    <feature type="domain" description="Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase anticodon-binding" evidence="14">
        <location>
            <begin position="689"/>
            <end position="839"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00048359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="NCBIfam" id="TIGR00392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU363035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB39616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="977" mass="114210" checksum="65E76EFB27CB6B5B" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCV4</accession>
    <name>B1YCV4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl transferase family 39</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0678</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350037.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCV4"/>
    <dbReference type="STRING" id="444157.Tneu_0678"/>
    <dbReference type="GeneID" id="6165367"/>
    <dbReference type="KEGG" id="tne:Tneu_0678"/>
    <dbReference type="eggNOG" id="arCOG00561">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032023_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038731">
        <property type="entry name" value="RgtA/B/C-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13231">
        <property type="entry name" value="PMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="154"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="196"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="228"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="259"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="331"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="355"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyltransferase RgtA/B/C/D-like" evidence="2">
        <location>
            <begin position="135"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="418" mass="45748" checksum="B339B91D911F5FF5" modified="2008-05-20" version="1">MGKPLGAPERGQEGDRGVVKVYLALAVVVGVFLYFAYSVATLPGSDGLPGDGGYISDEVWYVTSARNILHDFFKTPANSPYYTTTLDCLTNGSKIVKEYSNLNAVTVTGEVKCYIRRGFPYPDKEGILSYYNFEHPPLAKYVIGLMEAIRDEPLFWRIPSMALGAATLVLVFLSARRVAGETWALVGTGLMVLDNTFRAMSGIAMLDIYLSFFTALLVYLHLSGRPLGVGAALGLAASVKYSGAFPLFGLAYIYGRRSLWSFAAVFLMATSTFILANMPIAGQLGVQRWIHEVLAALSWHTTSRPPGPVASNPLDWLYMHNSFALYINPDIYASGTPAYLVALVYSLYRRDDVSLLYLSTYGGYWLVYLLGNHTLYSFYTTQFSPLAHILVAELLAEVARRGRASSAGDAQGVAAVEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCW0</accession>
    <name>B1YCW0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Adenylate kinase, conjectural</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0684</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350043.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCW0"/>
    <dbReference type="STRING" id="444157.Tneu_0684"/>
    <dbReference type="GeneID" id="6166211"/>
    <dbReference type="KEGG" id="tne:Tneu_0684"/>
    <dbReference type="eggNOG" id="arCOG01045">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096329_1_0_2"/>
    <dbReference type="OrthoDB" id="85381at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41930:SF1">
        <property type="entry name" value="DEPHOSPHO-COA KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41930">
        <property type="entry name" value="UPF0200 PROTEIN MJ1399"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13238">
        <property type="entry name" value="AAA_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="170" mass="18860" checksum="7B6785CDAF166274" modified="2008-05-20" version="1">MAKIFAVAGLPGSGKTTVAKLIERRGYAYYSLGDVVRMEAQRAATAPDRAAVVLRIEEGRRAIVRRLVDIMKRGTNAVVDGVRGIEEVEALEEHLGPVTLIYVVASRETRFRRLAGRGRSDDPSTYSQFLMRDIRELKFGLADLLARADYILVNEGKDIEALEAEVARLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCY6</accession>
    <name>B1YCY6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DJ-1/PfpI domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0710</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350069.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCY6"/>
    <dbReference type="STRING" id="444157.Tneu_0710"/>
    <dbReference type="GeneID" id="6165650"/>
    <dbReference type="KEGG" id="tne:Tneu_0710"/>
    <dbReference type="eggNOG" id="arCOG00769">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1536745_0_0_2"/>
    <dbReference type="OrthoDB" id="26509at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050325">
        <property type="entry name" value="Prot/Nucl_acid_deglycase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48094:SF12">
        <property type="entry name" value="PARKINSON DISEASE PROTEIN 7 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48094">
        <property type="entry name" value="PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="Class I glutamine amidotransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DJ-1/PfpI" evidence="1">
        <location>
            <begin position="4"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="184" mass="20630" checksum="653C82CBB878BA40" modified="2008-05-20" version="1">MPTALIYVIDMAKRDEYPTLKNFIAKAGYDVRTAVGSRDVNVNYQVDLETAGDEEVEKLAAEYDLLALAGGYKMYYHVLKKKPPLKNWDLNINIERLNALVTRFSKNDRLVVAPLAVPGYLAQLGLLRGKNATVYPITELIRILRENGANFVNQHVVKDRGVVTVDDITTVGEKEFLAAFRETA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="94" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD57</accession>
    <name>AROE_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Shikimate dehydrogenase (NADP(+))</fullName>
            <shortName evidence="1">SDH</shortName>
            <ecNumber evidence="1">1.1.1.25</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">aroE</name>
        <name type="ordered locus">Tneu_0781</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>shikimate + NADP(+) = 3-dehydroshikimate + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17737"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16630"/>
            <dbReference type="ChEBI" id="CHEBI:36208"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.25"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 4/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the shikimate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.25" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350140.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD57"/>
    <dbReference type="SMR" id="B1YD57"/>
    <dbReference type="STRING" id="444157.Tneu_0781"/>
    <dbReference type="GeneID" id="6164307"/>
    <dbReference type="KEGG" id="tne:Tneu_0781"/>
    <dbReference type="eggNOG" id="arCOG01033">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044063_0_1_2"/>
    <dbReference type="OrthoDB" id="8744at2157"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00087"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004764">
        <property type="term" value="F:shikimate 3-dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019632">
        <property type="term" value="P:shikimate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10860">
        <property type="entry name" value="Leucine Dehydrogenase, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00222">
        <property type="entry name" value="Shikimate_DH_AroE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminoacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041121">
        <property type="entry name" value="SDH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011342">
        <property type="entry name" value="Shikimate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013708">
        <property type="entry name" value="Shikimate_DH-bd_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022893">
        <property type="entry name" value="Shikimate_DH_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006151">
        <property type="entry name" value="Shikm_DH/Glu-tRNA_Rdtase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00507">
        <property type="entry name" value="aroE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21089:SF1">
        <property type="entry name" value="BIFUNCTIONAL 3-DEHYDROQUINATE DEHYDRATASE_SHIKIMATE DEHYDROGENASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21089">
        <property type="entry name" value="SHIKIMATE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18317">
        <property type="entry name" value="SDH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01488">
        <property type="entry name" value="Shikimate_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08501">
        <property type="entry name" value="Shikimate_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="Aminoacid dehydrogenase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword id="KW-0521">NADP</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000100148" description="Shikimate dehydrogenase (NADP(+))">
        <location>
            <begin position="1"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="14"/>
            <end position="16"/>
        </location>
        <ligand>
            <name>shikimate</name>
            <dbReference type="ChEBI" id="CHEBI:36208"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>shikimate</name>
            <dbReference type="ChEBI" id="CHEBI:36208"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>shikimate</name>
            <dbReference type="ChEBI" id="CHEBI:36208"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>shikimate</name>
            <dbReference type="ChEBI" id="CHEBI:36208"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="121"/>
            <end position="125"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="145"/>
            <end position="150"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>shikimate</name>
            <dbReference type="ChEBI" id="CHEBI:36208"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00222"/>
        </source>
    </evidence>
    <sequence length="260" mass="28063" checksum="B4F61E36EEC768D8" modified="2008-05-20" version="1">MYFAVIGTHVRGKSASPAMHNASFKALGVNAVYIAVDVPREELPCFLKLARLNLRGFNVTIPHKEEVVKHLDGVAADARAIGAVNTVLVERNLLVGYNTDASAVYQLAGSHMRGADVLIVGAGGAARAALFAAIKAEARAVYIANRTYERAEALAREFAEKFKREVKAVRSPVKADVVVNATPVYDAMVADLSGASLYVDFAYIPTPRTKMVEEAQRLGIKVVDGVDLLVEQGAQAEKIWLGVEPDRTVMKRAVLEFLGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD85</accession>
    <name>B1YD85_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Aminotransferase</fullName>
            <ecNumber evidence="5">2.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0810</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350168.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD85"/>
    <dbReference type="STRING" id="444157.Tneu_0810"/>
    <dbReference type="GeneID" id="6164482"/>
    <dbReference type="KEGG" id="tne:Tneu_0810"/>
    <dbReference type="eggNOG" id="arCOG04333">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_4_3_2"/>
    <dbReference type="OrthoDB" id="372018at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00609">
        <property type="entry name" value="AAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051926">
        <property type="entry name" value="Ala_Aminotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II_large"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43488">
        <property type="entry name" value="GLUTAMATE-PYRUVATE AMINOTRANSFERASE ALAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43488:SF2">
        <property type="entry name" value="GLUTAMATE-PYRUVATE AMINOTRANSFERASE ALAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5 7" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotransferase class I/classII large" evidence="6">
        <location>
            <begin position="19"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="332" mass="36203" checksum="FC83787FF804E6E1" modified="2008-05-20" version="1">MDFSLVLRRIGEAAPRHRLDIGDPDLPPPPELVEALRGGGDFRYGPSEGLPEFREAVAEVFKADPGEVVAVAGGRHGLAALMWIFRKRRLLTTSPFYPGYFDIAGVFGLELGLVEGGDGWIPNFAERGVYVVNYPNNPTGAVLPRGKVRELVDVAEFVISDEIYRDIVFTEFVSPAELSPSSVAVVYSFSKVFSVPGLRVGAVIAPRDIAREVARFNRATVNVAPTPAQRAVASVVHLLPRRSREISQAYLRRVELASAELRLRFTRPGGAFYLFPWVGDDVKCFESALEAGVSILPGSLYGRGGYVRIALVEPEERLREAFSAINKACGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD94</accession>
    <name>B1YD94_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA-directed RNA polymerase subunit Rpo11</fullName>
            <ecNumber evidence="3">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">DNA-directed RNA polymerase subunit L</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpo11</name>
        <name evidence="3" type="synonym">rpoL</name>
        <name evidence="5" type="ordered locus">Tneu_0819</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the RNA polymerase complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the archaeal Rpo11/eukaryotic RPB11/RPC19 RNA polymerase subunit family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350177.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD94"/>
    <dbReference type="STRING" id="444157.Tneu_0819"/>
    <dbReference type="GeneID" id="6164341"/>
    <dbReference type="KEGG" id="tne:Tneu_0819"/>
    <dbReference type="eggNOG" id="arCOG04111">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090381_5_3_2"/>
    <dbReference type="OrthoDB" id="24205at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06927">
        <property type="entry name" value="RNAP_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.10">
        <property type="entry name" value="RNA polymerase, RBP11-like subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00261">
        <property type="entry name" value="RNApol_arch_Rpo11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036603">
        <property type="entry name" value="RBP11-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009025">
        <property type="entry name" value="RBP11-like_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008193">
        <property type="entry name" value="RNA_pol_Rpb11_13-16kDa_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022905">
        <property type="entry name" value="Rpo11-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13656">
        <property type="entry name" value="RNA_pol_L_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55257">
        <property type="entry name" value="RBP11-like subunits of RNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01154">
        <property type="entry name" value="RNA_POL_L_13KD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3 5" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA-directed RNA polymerase RBP11-like dimerisation" evidence="4">
        <location>
            <begin position="14"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="89" mass="10291" checksum="96363F2311B9CE0B" modified="2008-05-20" version="1">MLQMEVVTLTDKYLELKVKGETYTLFSPLVEYLSSDPDVEYIQFDVDHPLQENAHFKLKVRRGTPLEAVERAVKAVLADIEELERGFFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDE9</accession>
    <name>B1YDE9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0875</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350232.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDE9"/>
    <dbReference type="STRING" id="444157.Tneu_0875"/>
    <dbReference type="GeneID" id="6165931"/>
    <dbReference type="KEGG" id="tne:Tneu_0875"/>
    <dbReference type="eggNOG" id="arCOG05695">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1507443_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="153"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="174" mass="20133" checksum="90E0B27B12CD4590" modified="2008-05-20" version="1">MDNRYVVWFIPLSRGEAVEAIRRAYGVAQEHARKIGGRLEPIQPKHIYGQEADKFGYTLQIGRIAVNMPPASVLVVWGFYNADEYLDFVRFIQDGRVYEWFVEPIAYYPERVGVWLEEPLIFRGSVYIDVHTTSSEERDRTYGWPLGYYIAPVQPPQEVKPPRRPRRGGQGGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="97" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDF2</accession>
    <name>B1YDF2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">CTP synthase</fullName>
            <ecNumber evidence="11">6.3.4.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Cytidine 5'-triphosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Cytidine triphosphate synthetase</fullName>
            <shortName evidence="11">CTP synthetase</shortName>
            <shortName evidence="11">CTPS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">UTP--ammonia ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">pyrG</name>
        <name evidence="14" type="ordered locus">Tneu_0878</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>L-glutamine + H2O = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 11">
            <text>UTP + L-glutamine + ATP + H2O = CTP + L-glutamate + ADP + phosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:26426"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>UTP + NH4(+) + ATP = CTP + ADP + phosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:16597"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="11">Allosterically activated by GTP, when glutamine is the substrate; GTP has no effect on the reaction when ammonia is the substrate. The allosteric effector GTP functions by stabilizing the protein conformation that binds the tetrahedral intermediate(s) formed during glutamine hydrolysis. Inhibited by the product CTP, via allosteric rather than competitive inhibition.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 11">Pyrimidine metabolism; CTP biosynthesis via de novo pathway; CTP from UDP: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homotetramer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="11">CTPSs have evolved a hybrid strategy for distinguishing between UTP and CTP. The overlapping regions of the product feedback inhibitory and substrate sites recognize a common feature in both compounds, the triphosphate moiety. To differentiate isosteric substrate and product pyrimidine rings, an additional pocket far from the expected kinase/ligase catalytic site, specifically recognizes the cytosine and ribose portions of the product inhibitor.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the CTP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.2" evidence="11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350235.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDF2"/>
    <dbReference type="STRING" id="444157.Tneu_0878"/>
    <dbReference type="MEROPS" id="C26.964"/>
    <dbReference type="GeneID" id="6165097"/>
    <dbReference type="KEGG" id="tne:Tneu_0878"/>
    <dbReference type="eggNOG" id="arCOG00063">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011675_5_0_2"/>
    <dbReference type="OrthoDB" id="52769at2157"/>
    <dbReference type="UniPathway" id="UPA00159">
        <property type="reaction ID" value="UER00277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097268">
        <property type="term" value="C:cytoophidium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003883">
        <property type="term" value="F:CTP synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042802">
        <property type="term" value="F:identical protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044210">
        <property type="term" value="P:'de novo' CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019856">
        <property type="term" value="P:pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03113">
        <property type="entry name" value="CTPS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01746">
        <property type="entry name" value="GATase1_CTP_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000009">
        <property type="entry name" value="CTP synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.880:FF:000002">
        <property type="entry name" value="CTP synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01227">
        <property type="entry name" value="PyrG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004468">
        <property type="entry name" value="CTP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017456">
        <property type="entry name" value="CTP_synthase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033828">
        <property type="entry name" value="GATase1_CTP_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003792">
        <property type="entry name" value="PRK05380.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00337">
        <property type="entry name" value="PyrG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11550">
        <property type="entry name" value="CTP SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11550:SF0">
        <property type="entry name" value="CTP SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06418">
        <property type="entry name" value="CTP_synth_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="Class I glutamine amidotransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51273">
        <property type="entry name" value="GATASE_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 11" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="3 11 14" id="KW-0436">Ligase</keyword>
    <keyword evidence="7 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 11" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CTP synthase N-terminal" evidence="13">
        <location>
            <begin position="3"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="domain" description="Glutamine amidotransferase" evidence="12">
        <location>
            <begin position="299"/>
            <end position="523"/>
        </location>
    </feature>
    <feature type="region of interest" description="Amidoligase domain" evidence="11">
        <location>
            <begin position="1"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for glutamine hydrolysis" evidence="11">
        <location>
            <position position="378"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="504"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="506"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <note>allosteric inhibitor</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>UTP</name>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="14"/>
            <end position="19"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="146"/>
            <end position="148"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <note>allosteric inhibitor</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="185"/>
            <end position="190"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <note>allosteric inhibitor</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="185"/>
            <end position="190"/>
        </location>
        <ligand>
            <name>UTP</name>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <note>allosteric inhibitor</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>UTP</name>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="351"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="379"/>
            <end position="382"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="402"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="459"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF06418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB39815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="528" mass="58421" checksum="6BDD6F9F36583370" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDG8</accession>
    <name>B1YDG8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Histidine triad (HIT) protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0894</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350251.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDG8"/>
    <dbReference type="STRING" id="444157.Tneu_0894"/>
    <dbReference type="GeneID" id="6164356"/>
    <dbReference type="KEGG" id="tne:Tneu_0894"/>
    <dbReference type="eggNOG" id="arCOG00419">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056776_1_2_2"/>
    <dbReference type="OrthoDB" id="26806at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01275">
        <property type="entry name" value="FHIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="entry name" value="HIT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052908">
        <property type="entry name" value="AP-4-A_phosphorylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039383">
        <property type="entry name" value="FHIT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011146">
        <property type="entry name" value="HIT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42997:SF1">
        <property type="entry name" value="AP-4-A PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42997">
        <property type="entry name" value="HIT FAMILY HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01230">
        <property type="entry name" value="HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="HIT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51084">
        <property type="entry name" value="HIT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HIT" evidence="3">
        <location>
            <begin position="24"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Histidine triad motif" evidence="2">
        <location>
            <begin position="120"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="152" mass="17251" checksum="95EE81E0C8EEC669" modified="2008-05-20" version="1">MDFNVVYAPWRLRYIQNVGKGECFLCKAAGERERDDENLVPARGKHVFAILNKFPYTWGHVMVSPYRHVSQFEELTAEEWAEMVDMARRLMEALKKTVGAGRFIVGLNIGRAAGAGLEGHLHLHIIPDREVEPGVDLPQALVKLTRELREAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDI0</accession>
    <name>B1YDI0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Carboxylate--amine ligase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0906</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350263.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDI0"/>
    <dbReference type="STRING" id="444157.Tneu_0906"/>
    <dbReference type="GeneID" id="6164492"/>
    <dbReference type="KEGG" id="tne:Tneu_0906"/>
    <dbReference type="eggNOG" id="arCOG00347">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1006924_0_0_2"/>
    <dbReference type="OrthoDB" id="31247at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10900">
        <property type="entry name" value="PAC-like subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019151">
        <property type="entry name" value="Proteasome_assmbl_chaperone_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038389">
        <property type="entry name" value="PSMG2_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35610">
        <property type="entry name" value="3-ISOPROPYLMALATE DEHYDRATASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35610:SF3">
        <property type="entry name" value="PROTEASOME ASSEMBLY CHAPERONE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09754">
        <property type="entry name" value="PAC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159659">
        <property type="entry name" value="Cgl1923-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="274" mass="29939" checksum="115AD7476A8180C3" modified="2008-05-20" version="1">MRLEVKISGLPRDKRNILVMACPEPSLAGVVAVEYLIDALAMEEIGAIRITEMPPVIAVVNGAAKLPYRIFYSRQTGVVAIRQHVPIPPQIYAEFIHKVLDWAEENKVKLAVCLSAMPAAGERENDVVYYVTEESLVEKFRQYGFEPIKEATVTGLEGAYLDAVLGRGIDGALLIAESRLLTAIKRLVDSGKISTHRDVVLILNDLVGRVGPDVGAALKLINAVAKLAETQIDTAKLQEHASKYAFLVEKNIEAMFKPVEAAARAPGKEIPLVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDQ4</accession>
    <name>B1YDQ4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0984</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350337.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDQ4"/>
    <dbReference type="STRING" id="444157.Tneu_0984"/>
    <dbReference type="GeneID" id="6164414"/>
    <dbReference type="KEGG" id="tne:Tneu_0984"/>
    <dbReference type="eggNOG" id="arCOG12855">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1072070_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="233"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="194"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="259" mass="27305" checksum="8DAA2B4D6EDCF5B5" modified="2008-05-20" version="1">MVKLVFLLVLAVFTWAWSVTVISYRDFEVYNGSLLLADGKAYTAATLVVPGGWPLRVVSGNFSLPLDVVSDVVVVLGSPSGGCDVYHFYSIAQDATAVLAVCSERVEAVVSADGGRRAVVFQTGVNYIVLPGRSSIRVESSTAPVRIREREIYTAHLPAVAGGSSLSGGPPAVYNTSLLYGRIYNLAGELAALRESCSRDLTALRKRVDELSGEVNALKAERDRLLVVGPNAVALYAAVGAGVAAGTAGVYLAAKRRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDR6</accession>
    <name>B1YDR6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">CRISPR-associated helicase Cas3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0997</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350349.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDR6"/>
    <dbReference type="STRING" id="444157.Tneu_0997"/>
    <dbReference type="GeneID" id="6164806"/>
    <dbReference type="KEGG" id="tne:Tneu_0997"/>
    <dbReference type="eggNOG" id="arCOG01444">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031100_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140097">
        <property type="term" value="F:catalytic activity, acting on DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052511">
        <property type="entry name" value="ATP-dep_Helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054712">
        <property type="entry name" value="Cas3-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006474">
        <property type="entry name" value="Helicase_Cas3_CRISPR-ass_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01587">
        <property type="entry name" value="cas3_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47962:SF5">
        <property type="entry name" value="ATP-DEPENDENT HELICASE LHR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47962">
        <property type="entry name" value="ATP-DEPENDENT HELICASE LHR-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22590">
        <property type="entry name" value="Cas3-like_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="6">
        <location>
            <begin position="1"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="7">
        <location>
            <begin position="258"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="491" mass="56038" checksum="AC86CC23EA8791FB" modified="2008-05-20" version="1">MRRAVERGLELARAGASRIVLELPTGYGKTYAAPLFYKALREGGLCSKAIHVMPLRALIRKQIERYASAHPDIKFAYQDGDVLLRDRYVKDPYFREEYVLTTLDSFIHNLAKVPVAEMWKFYKSERPSVRYHIPLAYIYPSCVFLDEAHMAAGSRKELAAVKAAVRFLKELGVPTVVMSATLGEWKRDVFKGFRFVSLGERDEERGGDVKVADPEFERRMSNVAYKVGRVDNIEEVARRKAEEGKRVLVIVNDVCRVQRLSETLGAPAVHSLMTRRDRERAERELDKAQIVVGTDAIGAGVDVDFDVLITEADEVERVAQRVGRVCRNRESCVGEIYFVGEVDEELLKVKNWRLPHKPDSYLRLLRGEAEVDEKHFWFLGTVMKEEVVDTHNLREKLLEEGGSFVRHALLEAEVGEGPEESFTVSLDRLGQLEFEVYVGERRIEPPRSYGDRELMEWLLDVVDEYGDVPRIRVVKYREGLGAVLKKCGEGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="94" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDS8</accession>
    <name>B1YDS8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Molybdate/tungstate import ATP-binding protein WtpC</fullName>
            <ecNumber evidence="6">7.3.2.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1009</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>tungstate(in) + ATP + H2O = tungstate(out) + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:35027"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46502"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.3.2.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5">The complex is composed of two ATP-binding proteins (WtpC), two transmembrane proteins (WtpB) and a solute-binding protein (WtpA).</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.</text>
    </comment>
    <dbReference type="EC" id="7.3.2.6" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350361.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDS8"/>
    <dbReference type="STRING" id="444157.Tneu_1009"/>
    <dbReference type="GeneID" id="6164951"/>
    <dbReference type="KEGG" id="tne:Tneu_1009"/>
    <dbReference type="eggNOG" id="arCOG00175">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_1_2"/>
    <dbReference type="OrthoDB" id="18368at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901238">
        <property type="term" value="F:ABC-type tungstate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000042">
        <property type="entry name" value="Maltose/maltodextrin ABC transporter, ATP-binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050093">
        <property type="entry name" value="ABC_SmlMolc_Importer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42781">
        <property type="entry name" value="SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42781:SF4">
        <property type="entry name" value="SPERMIDINE_PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="MOP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="4"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00038307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00038781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00039025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00041133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="347" mass="37911" checksum="9EC7F3D128103564" modified="2008-05-20" version="1">MTEVKVERLSKVFDGRVAAVDGVDLSIGHGEILAVLGPSGCGKTTLLRLVAGLEEPTSGRIYFDGRDVTRLPTQERNTAIVPQTWALWPHMTVFENVAYGLRLRKRRLGLTEGEIRRRVEEALGLVGLAELGDRRPYQLSGGQQQRVALARALVVQPAVLLLDEPLANLDAKLRLELREEVRRVAKRLSITTLYVTHDQEEAMAVADRIAVMNAGRILQVGTPEEIYHSPAHLFVATFLGRSNLLRGRVAEVKGGEAVVDVGFPLVARTPQGAAPGDPVEVVVRPEDVRLGAGGVRCTVEDVVFLGRHYQTTLRCGGAVLKAEGPRPEARPGEEVRVEVARAWAFKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDU0</accession>
    <name>B1YDU0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ABC-2 type transport system permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1022</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350373.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDU0"/>
    <dbReference type="STRING" id="444157.Tneu_1022"/>
    <dbReference type="GeneID" id="6164902"/>
    <dbReference type="KEGG" id="tne:Tneu_1022"/>
    <dbReference type="eggNOG" id="arCOG03849">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027925_0_0_2"/>
    <dbReference type="OrthoDB" id="28672at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="154"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="185"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="273"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="299"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="340"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="369"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="411"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="445"/>
            <end position="469"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="491" mass="53783" checksum="C837AEC587D48178" modified="2008-05-20" version="1">MRFLKLVYYQVKQLYSKWFPIVYAVIAASVLLPYLAFHSTAGEAAQQPPMGRYIPLAVMALFTLVVTIGGTFAVAKQDVDFTFAAPIDPKQIFLARVIAQALIKIGFLLLVTLPLSSLEGPYDVALYLATLWSSGLLFSAAELSALLSGKVQRFLYIGVPIALIALLFIDPQITPLYGLFRPSPLRALEAVALATAYLAAAPYKRVEELSTNVYGVLTWTPQPRIIERPSALPHTLWGVIWHTSVGSTVNIRLKTPGSVTTVRQTRTNVFKSSLPIVAAVAAVYTFIVLHVSGTDEVEFTSIVGFLLLFNGFTSGFTTLMAERLWISLAADPIRYLRYRMAARTIIAAVLYAPWAAAFLIQSAVFPPSVFLDVALASAVLVLPSATWLLASVKPPPQIRELGVVQAPQRLSLWNLLQVLAASLYISFALFPYALAVVAYFLKLEFLWQIALIDAAVVLSLSAAFFYVVVLSERGAPLWSWAVSKLSENGYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDU6</accession>
    <name>B1YDU6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Tryptophan synthase beta chain</fullName>
            <ecNumber evidence="12">4.2.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">trpB</name>
        <name evidence="14" type="ordered locus">Tneu_1028</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 12">The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11 12">
            <text>(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + L-tryptophan + H2O</text>
            <dbReference type="Rhea" id="RHEA:10532"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.2.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 12">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 12">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 12">Tetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the TrpB family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.20" evidence="12"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350379.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDU6"/>
    <dbReference type="STRING" id="444157.Tneu_1028"/>
    <dbReference type="GeneID" id="6164998"/>
    <dbReference type="KEGG" id="tne:Tneu_1028"/>
    <dbReference type="eggNOG" id="arCOG01432">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042858_1_0_2"/>
    <dbReference type="OrthoDB" id="371827at2157"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052684">
        <property type="term" value="F:L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00133">
        <property type="entry name" value="Trp_synth_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006316">
        <property type="entry name" value="Trp_synth_b-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006653">
        <property type="entry name" value="Trp_synth_b_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023026">
        <property type="entry name" value="Trp_synth_beta/beta-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="TrpB-like_PALP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="TrpB-like_PALP_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009057">
        <property type="entry name" value="PRK12391.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01415">
        <property type="entry name" value="trpB_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48077:SF6">
        <property type="entry name" value="TRYPTOPHAN SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48077">
        <property type="entry name" value="TRYPTOPHAN SYNTHASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001413">
        <property type="entry name" value="Trp_syn_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500824">
        <property type="entry name" value="TrpB_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="Tryptophan synthase beta subunit-like PLP-dependent enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00168">
        <property type="entry name" value="TRP_SYNTHASE_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 12" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="10 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="8 12" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 12" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="Tryptophan synthase beta chain-like PALP" evidence="13">
        <location>
            <begin position="73"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="12">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00049047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB39959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="453" mass="50038" checksum="8C5F70F232C2BBFB" modified="2008-05-20" version="1">MGVRAPQEEWMVPRRWYNIVPDLPKPLPPYLKPNGEPVRPEEFEVLFARELVRQEFSQERWIPVPPPVRDVYLLWRPTPLLRARRLEELLKTPARIYYKFEGVSPPGSHKPNTAVAQLYYVSKEGAGRVTTETGAGQWGSSVAFAASLFGVKATVYMVRASYGQKPYRRVLMELWGAEVVPSPSDRTEAGRRFLAEDPNHPGSLGIAISEAVEDAVKTGAKYVLGSVLNHVLIHQTVIGLEAAEQIRYFGDYPDYVVGACGGGSSFSGLFWPFYHEKRVGKAERDVKFVAVEPVAVPTLTRGEYIYDLGDTAGLTPLIKMYSVGHGYKPPPIHAGGLRYHGCAPTLSLLVAEGEVSAVAYRQREVFEAARLFAQAEGVVPAPESAHAVKAAVELALQAKREGRPVTILFNMSGHGLLDLAAYDEYMRGVLQDVEPTAEEIMANIARAKALLRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="35" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDW2</accession>
    <name>B1YDW2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1044</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350395.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDW2"/>
    <dbReference type="STRING" id="444157.Tneu_1044"/>
    <dbReference type="GeneID" id="6165000"/>
    <dbReference type="KEGG" id="tne:Tneu_1044"/>
    <dbReference type="HOGENOM" id="CLU_2191126_0_0_2"/>
    <dbReference type="OrthoDB" id="387452at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="108" mass="11987" checksum="D260450A060B4F93" modified="2008-05-20" version="1">MREVSYAYNGTLRTLSVYKQVPPNGTWLAVVPCGANVTVVTSYGVATRAQTWTPVCIKREVVASEVNAEFIRELVEYADYVADYHLYKSVPVLAAFFRSGSFQVAVQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDW5</accession>
    <name>B1YDW5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Trm112p-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1047</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350398.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDW5"/>
    <dbReference type="STRING" id="444157.Tneu_1047"/>
    <dbReference type="GeneID" id="6165127"/>
    <dbReference type="KEGG" id="tne:Tneu_1047"/>
    <dbReference type="eggNOG" id="arCOG04124">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_155659_4_3_2"/>
    <dbReference type="OrthoDB" id="6467at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.25.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005651">
        <property type="entry name" value="Trm112-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03966">
        <property type="entry name" value="Trm112p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158997">
        <property type="entry name" value="Trm112p-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="140" mass="16707" checksum="742350312A59BAAA" modified="2008-05-20" version="1">MKYRLMDVLACPYDKTFPLRLIAIKRTEHPERQYTWPRKPFCEEYCSYRDLKIKEHPKPEALPCEECHRWEIETGVIYCPTCGRWYPIIEEIPRMLPDELRNEKEELAFLQNIAEDLKKAAPDIADKILTQGRPFALKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDW9</accession>
    <name>B1YDW9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribosomal protein L24, conjectural</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1051</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350402.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDW9"/>
    <dbReference type="STRING" id="444157.Tneu_1051"/>
    <dbReference type="GeneID" id="6164707"/>
    <dbReference type="KEGG" id="tne:Tneu_1051"/>
    <dbReference type="eggNOG" id="arCOG05424">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_200891_0_0_2"/>
    <dbReference type="OrthoDB" id="33200at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="69" mass="7748" checksum="08CC5AA671C528B9" modified="2008-05-20" version="1">MPFELRQRPTELRCSNCGRLVGAGAIVVKTCCVNKPWVFCSRECYRQFVAKWTRNQEAAGGSLRRGAAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDX1</accession>
    <name>B1YDX1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Formate dehydrogenase protein FdhE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1053</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350404.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDX1"/>
    <dbReference type="STRING" id="444157.Tneu_1053"/>
    <dbReference type="GeneID" id="6165083"/>
    <dbReference type="KEGG" id="tne:Tneu_1053"/>
    <dbReference type="eggNOG" id="arCOG05634">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_120797_0_0_2"/>
    <dbReference type="OrthoDB" id="9573at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1670.10">
        <property type="entry name" value="FdhE-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024064">
        <property type="entry name" value="FdhE-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144020">
        <property type="entry name" value="FdhE-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="194" mass="22619" checksum="ADDAFD0FA473F910" modified="2008-05-20" version="1">MEPLYRALCGEDQECLREARETPRFLSELDQIARGLEIHVDRPGQYAVESVDVERLRREAEGRGVPRQLVDYVVRRALYFRFGSGGVGGRCKNCGDPASLIVLRREDLGIYERHRPYARCICGSEWEFELWRCPNCGASGRDSFDVYIYGGVHIYSCRKCGYRFGVVEDRPDLHTTHFYIHMLRWTLPNPRPWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE07</accession>
    <name>B1YE07_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter, periplasmic binding protein, thiB subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1089</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350439.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE07"/>
    <dbReference type="STRING" id="444157.Tneu_1089"/>
    <dbReference type="GeneID" id="6165555"/>
    <dbReference type="KEGG" id="tne:Tneu_1089"/>
    <dbReference type="eggNOG" id="arCOG00226">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_965112_0_0_2"/>
    <dbReference type="OrthoDB" id="130870at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030975">
        <property type="term" value="F:thiamine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015888">
        <property type="term" value="P:thiamine transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13518">
        <property type="entry name" value="PBP2_Fe3_thiamine_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005948">
        <property type="entry name" value="ThiB-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01254">
        <property type="entry name" value="sfuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30006:SF2">
        <property type="entry name" value="ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30006">
        <property type="entry name" value="THIAMINE-BINDING PERIPLASMIC PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13343">
        <property type="entry name" value="SBP_bac_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="338" mass="37323" checksum="4A9E89E9678E2688" modified="2008-05-20" version="1">MSIRGLLAAVVVVAAVLAALMAWQSLQQQMERKLVIVGPAGIGDLGRELARRFSERYGVNATFVALGGAVEMVNELVRNRDNPPWDVAIGVPEFYYTVLVEKGVLYCPGFKVEGVPAEEYWDPHGCVYPLDKSYIGIVYNESALAARGLKPPQTLDDLLKPEYRGLITYPNPVQSGTGLAVLSWVMSVKGEEEGWRYLKQLSSQISKIGYPSGFTPLRSALKRGDVLIALSWYSHAIDPGTPSMKAATYSAFLYKEGVAVLKNARNRDLALEFVKFALSKEGQDLVDPYNYMLPVRPDAVVKNNLGLPRPQSVVVYNPALGSKADEWRLRWQREIASG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE19</accession>
    <name>B1YE19_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1101</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350451.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE19"/>
    <dbReference type="STRING" id="444157.Tneu_1101"/>
    <dbReference type="GeneID" id="6165443"/>
    <dbReference type="KEGG" id="tne:Tneu_1101"/>
    <dbReference type="eggNOG" id="arCOG01679">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097806_9_1_2"/>
    <dbReference type="OrthoDB" id="9623at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051081">
        <property type="entry name" value="HTH_MetalResp_TranReg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33154">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR, ARSR FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33154:SF33">
        <property type="entry name" value="TRANSCRIPTIONAL REPRESSOR SDPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12840">
        <property type="entry name" value="HTH_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="4">
        <location>
            <begin position="9"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="105" mass="12116" checksum="2CD4FDF1600BC6A7" modified="2008-05-20" version="1">MSSPEDLLRVAKALSHPLRLKILLHLARRPTYIQDIAQTLGIPYALAHMHLKVLEEAGLVEGTYVVEEKPKPHLRKIYRLRDFKLVVDRQVLEELAKSQDSQRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE38</accession>
    <name>B1YE38_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1120</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350470.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE38"/>
    <dbReference type="STRING" id="444157.Tneu_1120"/>
    <dbReference type="GeneID" id="6165908"/>
    <dbReference type="KEGG" id="tne:Tneu_1120"/>
    <dbReference type="eggNOG" id="arCOG09847">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1248325_0_0_2"/>
    <dbReference type="OrthoDB" id="375692at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="221" mass="24878" checksum="5F42E3378E0AF0C4" modified="2008-05-20" version="1">MELLFRELNVGDFAVRPSQKNEKEIGAVVSILEEGELSVGDLLAVAQYDLSSMQAPGWVRKEAERLARLLRRRGLKRSAKAVFRWTSSSWLFSLAIYRHLAERGLPGYFAVEPYVGLTEAGDPFDYALVKEDRAVPVEVKRLASWANLEQYIGDFREKAQRITTAVLHLHLTEKLCRLTPPKGLRALLELANTGPETRVILTYHCGDAWSLEDVARLAEGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8K4</accession>
    <name>B1Y8K4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1153</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350502.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8K4"/>
    <dbReference type="STRING" id="444157.Tneu_1153"/>
    <dbReference type="GeneID" id="6165703"/>
    <dbReference type="KEGG" id="tne:Tneu_1153"/>
    <dbReference type="eggNOG" id="arCOG06981">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2010172_0_0_2"/>
    <dbReference type="OrthoDB" id="26081at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="126" mass="13773" checksum="13F80C91A8FE48B3" modified="2008-05-20" version="1">MRGEIAVVLPRRCGAGFTTPRYSYVFEEDPLVGLVRYAHCPPIGLHVPGVAQYRLRGLGVAEAIPVAGDGPLVIIGAPHDALSLRSAVVVRAVRGRIEAVGPADKIDLERFRRRIPVNLRLGRRYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8K9</accession>
    <name>B1Y8K9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">WD-40 repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1159</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350507.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8K9"/>
    <dbReference type="STRING" id="444157.Tneu_1159"/>
    <dbReference type="GeneID" id="6166129"/>
    <dbReference type="KEGG" id="tne:Tneu_1159"/>
    <dbReference type="eggNOG" id="arCOG02491">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_833191_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036322">
        <property type="entry name" value="WD40_repeat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001680">
        <property type="entry name" value="WD40_rpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00400">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00320">
        <property type="entry name" value="WD40"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50978">
        <property type="entry name" value="WD40 repeat-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="333" mass="37581" checksum="D78FF0262749BA16" modified="2008-05-20" version="1">MKLALKWKTGVGYIKHLQWNPKGGILAVVYRPLEMSKDKNSKDLLVFFHTSGISLWRLKSTSFDALAFSPDGSLIAVAAYNYEKSTVTIRDIEGREKKLRDYEEEEYKLEVYTITEKSLQRKNTFKIASNIRSIALSSDYIMAIVTEDNVVSFWNIKKNFAEELWRWRVDTQASITNQGTPLVRFNPVNANLVAVSTSNGEIIFVDLNSRTIHRHVSATKFVEWSPDGKLLLVSGNGILRVYDDQARLLDSVPADGESATWISNDTILVAGSTISTYSIKEGKLKPLDQELDTLKCECFDGIMHMSYSAPDNMLALVFKLGNVSRLCTYNIII</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8P6</accession>
    <name>B1Y8P6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Small ribosomal subunit protein eS24</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rps24e</name>
        <name evidence="4" type="ordered locus">Tneu_1197</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the eukaryotic ribosomal protein eS24 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8P6"/>
    <dbReference type="STRING" id="444157.Tneu_1197"/>
    <dbReference type="KEGG" id="tne:Tneu_1197"/>
    <dbReference type="eggNOG" id="arCOG04182">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_107248_3_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3370">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00545">
        <property type="entry name" value="Ribosomal_eS24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053709">
        <property type="entry name" value="eRP_eS24_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001976">
        <property type="entry name" value="Ribosomal_eS24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012678">
        <property type="entry name" value="Ribosomal_uL23/eL15/eS24_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10496">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01282">
        <property type="entry name" value="Ribosomal_S24e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54189">
        <property type="entry name" value="Ribosomal proteins S24e, L23 and L15e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="135" mass="15354" checksum="07773C9B12857AD3" modified="2008-05-20" version="1">MGAVKFINTALFHPVSAPAFNIVSVRENKLLGRRELVVEALHREASTPTRQSVREWVAQQLGVDVVNVLVRKIKTEFGVGRSIAEVHVYSDSKLARAVEPLYVLARNLGEEGKKLVEEAKKRRSARREKRRKRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Q7</accession>
    <name>B1Y8Q7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA repair protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1209</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in DNA damage repair.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the Nre family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350555.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Q7"/>
    <dbReference type="STRING" id="444157.Tneu_1209"/>
    <dbReference type="GeneID" id="6166227"/>
    <dbReference type="KEGG" id="tne:Tneu_1209"/>
    <dbReference type="eggNOG" id="arCOG04269">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039703_0_0_2"/>
    <dbReference type="OrthoDB" id="6609at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02096">
        <property type="entry name" value="Nre"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033167">
        <property type="entry name" value="Nre"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006979">
        <property type="entry name" value="Nre_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006978">
        <property type="entry name" value="Nre_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38136">
        <property type="entry name" value="DNA REPAIR PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38136:SF3">
        <property type="entry name" value="DNA REPAIR PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04895">
        <property type="entry name" value="Nre_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04894">
        <property type="entry name" value="Nre_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0227">DNA damage</keyword>
    <keyword evidence="1" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Archaeal Nre N-terminal" evidence="2">
        <location>
            <begin position="13"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="Archaeal Nre C-terminal" evidence="3">
        <location>
            <begin position="290"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="378" mass="42489" checksum="1AE8353FCF8714B7" modified="2008-05-20" version="1">MSICVKCGGRKLLCGLRRCPIEDRVAAFKIALRRSWGLEVFGSTPPAAVVGEAGWPAVSVYFGEPPDVFGEEARFYDDPTSMWGLPLEEIARRRSYMAFGVKRAKSPWELGELPYVYISAKPVDVEMRFAKAPLPQIRFDLFEKPMGPRAPLERARVVENPSVPPPLDRLIWDDVSASEAAVELYARGVDIYTIQRAFSLGLLGARHRRRLVPSRWGITAVDVAVGNWLAGRVRTLPEVGGILYGYGEYLDNRYLVAVVPGPLRFVYLERWQSGGEVAEILVKEDVRGARSAMDGGFEAARVALLEKLASMGRRGSVAVVRWIGEGYYVSVGNWQIRETVRRIQLRPMDEEYRRYVERVGRDPLDLLPRGRALTDFLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8U6</accession>
    <name>B1Y8U6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1248</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350594.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8U6"/>
    <dbReference type="STRING" id="444157.Tneu_1248"/>
    <dbReference type="GeneID" id="6166073"/>
    <dbReference type="KEGG" id="tne:Tneu_1248"/>
    <dbReference type="eggNOG" id="arCOG08359">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1801772_0_0_2"/>
    <dbReference type="OrthoDB" id="26872at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101447">
        <property type="entry name" value="Formin homology 2 domain (FH2 domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="148" mass="16457" checksum="2338B8571B4B789C" modified="2008-05-20" version="1">MEKFRTIVGEKKEEPKRELAEVVQEVRQAVEPAPPPPPPPPPPPAPKEATTDVGQFMRFVASTIAKLPAEERTFVRFLIAPKATPLVMNDRMIDVIYKNIDLLEEPHIEALSKSLSPEDLVKLAEKFNSKLAALISILAEKCRPSAPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8V6</accession>
    <name>B1Y8V6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Small ribosomal subunit protein uS14</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rps14</name>
        <name evidence="8" type="ordered locus">Tneu_1258</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Binds 16S rRNA, required for the assembly of 30S particles.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the universal ribosomal protein uS14 family. Zinc-binding uS14 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350604.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8V6"/>
    <dbReference type="STRING" id="444157.Tneu_1258"/>
    <dbReference type="GeneID" id="6165886"/>
    <dbReference type="KEGG" id="tne:Tneu_1258"/>
    <dbReference type="eggNOG" id="arCOG00782">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_177289_2_2_2"/>
    <dbReference type="OrthoDB" id="5615at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002181">
        <property type="term" value="P:cytoplasmic translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.830.10:FF:000002">
        <property type="entry name" value="40S ribosomal protein S29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.830.10">
        <property type="entry name" value="30s Ribosomal Protein S14, Chain N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01364_A">
        <property type="entry name" value="Ribosomal_uS14_2_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001209">
        <property type="entry name" value="Ribosomal_uS14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023676">
        <property type="entry name" value="Ribosomal_uS14_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018271">
        <property type="entry name" value="Ribosomal_uS14_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039744">
        <property type="entry name" value="RIbosomal_uS14_euk_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043140">
        <property type="entry name" value="Ribosomal_uS14_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004424">
        <property type="entry name" value="PRK05766.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12010">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12010:SF2">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00253">
        <property type="entry name" value="Ribosomal_S14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57716">
        <property type="entry name" value="Glucocorticoid receptor-like (DNA-binding domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00527">
        <property type="entry name" value="RIBOSOMAL_S14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="54" mass="6407" checksum="07AB7CB0F6CDD963" modified="2008-05-20" version="1">MPSTKPPKERPYGKSKIRCIRCGTREAVIRKYGLNLCRRCFREVAPQLGFRKYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8V9</accession>
    <name>B1Y8V9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF429 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1261</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350607.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8V9"/>
    <dbReference type="STRING" id="444157.Tneu_1261"/>
    <dbReference type="GeneID" id="6166323"/>
    <dbReference type="KEGG" id="tne:Tneu_1261"/>
    <dbReference type="eggNOG" id="arCOG04409">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121772_0_0_2"/>
    <dbReference type="OrthoDB" id="50338at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018036">
        <property type="entry name" value="DUF429_subgr"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF024051">
        <property type="entry name" value="DUF429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="166" mass="17687" checksum="6C5C580783E035AB" modified="2008-05-20" version="1">MVVAGVDLSVRRPSAVAVFEGCDLLYLGLGLGDGDVVKLAVLLKPAVVAIDAPLSTPPGGRGLRDVERELRRLGFRLLPPMMGGMAKLTERGIRLADALGSEVIEVHPTTSIKAMGLSRGDVERWLGLRQRDLVDAVAAALTAVAYVRGAYRRFGPFVLPTARVCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8W1</accession>
    <name>B1Y8W1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF72 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1263</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350609.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8W1"/>
    <dbReference type="GeneID" id="6165919"/>
    <dbReference type="KEGG" id="tne:Tneu_1263"/>
    <dbReference type="eggNOG" id="arCOG04291">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046519_0_1_2"/>
    <dbReference type="OrthoDB" id="35747at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.410">
        <property type="entry name" value="Protein of unknown function UPF0759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002763">
        <property type="entry name" value="DUF72"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036520">
        <property type="entry name" value="UPF0759_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30348:SF4">
        <property type="entry name" value="DUF72 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30348">
        <property type="entry name" value="UNCHARACTERIZED PROTEIN YECE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01904">
        <property type="entry name" value="DUF72"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117396">
        <property type="entry name" value="TM1631-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="231" mass="26655" checksum="F80FE810AC043E86" modified="2008-05-20" version="1">MEVFVGTSGWLYAWNLGRSLEWYVENSGLNAVELNASFYRIPTERQAARWAAAGGRLRWAVKVYRGVTHFGKLSEGALELLRRFLAAFKPLDPYVDFYLFQMPPSFARSRRSMSRVEKAAGVVGRRAAFEFRHPSWFSQEVVEWAEEAGFALVSIDSPEWTWVVEAGGVVYLRMHGRTSWYSHFYDEVELRDVAQRVVALRPARVYVFFNNDHAMLENARSMLAILKELTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y902</accession>
    <name>B1Y902_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="11">SecY protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1304</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the SecY/SEC61-alpha family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350650.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y902"/>
    <dbReference type="STRING" id="444157.Tneu_1304"/>
    <dbReference type="GeneID" id="6165519"/>
    <dbReference type="KEGG" id="tne:Tneu_1304"/>
    <dbReference type="eggNOG" id="arCOG04169">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031763_3_0_2"/>
    <dbReference type="OrthoDB" id="371914at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3370.10">
        <property type="entry name" value="SecY subunit domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002208">
        <property type="entry name" value="SecY/SEC61-alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030659">
        <property type="entry name" value="SecY_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023201">
        <property type="entry name" value="SecY_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006341">
        <property type="entry name" value="PRK08568.1-5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10906">
        <property type="entry name" value="SECY/SEC61-ALPHA FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00344">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004557">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00303">
        <property type="entry name" value="SECYTRNLCASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103491">
        <property type="entry name" value="Preprotein translocase SecY subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00755">
        <property type="entry name" value="SECY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="23"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="56"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="109"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="134"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="163"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="242"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="283"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="336"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="397"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="420"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="459" mass="50172" checksum="A2030AED9B831D79" modified="2008-05-20" version="1">MDFLTLIPTVSRPPGRVPLSRRLFWTAVVATVYILMTITPLYGVRTQQEGTHAAQQLLSIIFGTAYGTLAHLGIGPIVIAGILLEVFAFSGLLNLDLNKREDRLKFTLLLKWVALGIAALEATAYVLSGQFGQVGPVAGFLIVVQLLVATVIIILLDDLMSKGWGIGSAISLIIFLGVTRQIFLSLFSWDVVTDVHNQTHVVGLIPALGAALYDLFARGDAAPLVNLINRPVFLPGQPTPTYLPDLFGLLSTVLLGYIILYLEMMKVNIPVTAGQYRGIKFNIPLRFVYVSVLPIIFTTYSLLLVGQMLFPLSRDNPVIGAVVSVVFPPHRYFFDVPLLVAHFLIYVALATAFAWVWVQLAGLSAEDQARQFTQSQLHVPGFRQSEKILAKLLERPINALTVISGFVAGAFAALGNILGVWGGGTGLILLVEIALQYYALVMREQIMEMYPGLKDVLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y904</accession>
    <name>B1Y904_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RNA-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1306</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350652.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y904"/>
    <dbReference type="STRING" id="444157.Tneu_1306"/>
    <dbReference type="GeneID" id="6165591"/>
    <dbReference type="KEGG" id="tne:Tneu_1306"/>
    <dbReference type="eggNOG" id="arCOG04069">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017233_1_0_2"/>
    <dbReference type="OrthoDB" id="4144at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd18086">
        <property type="entry name" value="HsC9orf114-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003750">
        <property type="entry name" value="Put_MeTrfase-C9orf114-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12150">
        <property type="entry name" value="CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12150:SF13">
        <property type="entry name" value="METHYLTRANSFERASE C9ORF114-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02598">
        <property type="entry name" value="Methyltrn_RNA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="alpha/beta knot"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="263" mass="29871" checksum="DD8DF472D16DA701" modified="2008-05-20" version="1">MSFSIAVPHDFLLEAPDEAGKVRKLGYLARAAAIFRVEEVVIYHYGEPLREEIDFAKTILEYMVTPPYLRRRVYKLDRRLRLAGLLPPLKIPSHTVPREPAVGEIREGVVERWDGYYSLVYIGGGRYAKIPRPYPIGTRLLVKIEAPTGRPDTYRASVYRGAPPNYWGFRVEVRSLRELAEGFDAVVLTGREGRSICEVKPRLGRRTLVVFGGPRKGVDEIYREEGVEMPGELINFVPGQGVETIRTEEAVFIVLSVLNLRRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y911</accession>
    <name>B1Y911_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1313</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350659.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y911"/>
    <dbReference type="STRING" id="444157.Tneu_1313"/>
    <dbReference type="GeneID" id="6166197"/>
    <dbReference type="KEGG" id="tne:Tneu_1313"/>
    <dbReference type="eggNOG" id="arCOG00545">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050517_0_0_2"/>
    <dbReference type="OrthoDB" id="40950at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:RNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050698">
        <property type="entry name" value="MBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11203:SF49">
        <property type="entry name" value="BLL1145 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11203">
        <property type="entry name" value="CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallo-beta-lactamase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="315" mass="34298" checksum="BBF69AF4CC8E2A6B" modified="2008-05-20" version="1">MNLYYDGGIYVEGRGVRFVVDPVGPIKGRVDFVLITHGHSDHISRYALRYPVVATRETLAAMSVRLGAAPARRITVAAGRVVEVDGVEVAVLEAGHILGSVMYLVEVDGLQALFTGDFNTVGTILTDAAEPVENVDVLVMEATYGDPAYVFPNRAEVYNELLDLVERHSGDGGVAIAAYPLGKAQEVARLLGHRAGAHAAVARYNRALGISTGGGREVVIVPSLRWAPRGYVRVEVSGWYAEEEARRRALREGVYGIPLSDHSDFPNLVQFAQEISPRLIYTVYGFTERLARHLRRLGLRAYPIPKSAGLPAHSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y912</accession>
    <name>B1Y912_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Basic membrane lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1314</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350660.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y912"/>
    <dbReference type="STRING" id="444157.Tneu_1314"/>
    <dbReference type="GeneID" id="6166218"/>
    <dbReference type="KEGG" id="tne:Tneu_1314"/>
    <dbReference type="eggNOG" id="arCOG00257">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038813_2_0_2"/>
    <dbReference type="OrthoDB" id="26049at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd19963">
        <property type="entry name" value="PBP1_BMP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052910">
        <property type="entry name" value="ABC-Purine-Binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003760">
        <property type="entry name" value="PnrA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43208">
        <property type="entry name" value="ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43208:SF1">
        <property type="entry name" value="ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02608">
        <property type="entry name" value="Bmp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="ABC transporter substrate-binding protein PnrA-like" evidence="2">
        <location>
            <begin position="61"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="431" mass="48562" checksum="D3E8520BDDBEA324" modified="2008-05-20" version="1">MSASRREWLKAVAAFAAGAIVGSGASYLALQSVKTAVEKTATTRPAEATTAPSTAAGLPKMKIHFIYVGPIGDYGWTHAHDVGRKYLESALCPDPKKWCIVETSYTEKVPEGEAYDYIKRAVADGANMVITTSYGYMDATKKAARDYPDRFFAHCSGEFKSQDERASLPNFAEYFIDLYEAYYLNGIVAGRMTKTNKLGYVAAFLIPEVIRHMNAFLLGAREVNPKVTMDVVQLGEWYSPERAKKAAVALVESNGADVLAFTEDSPTVLQTAEEYQRRGKAVWSFSHYSDMSNYGPKAHLTGQVVNWGPMYVEMAIRAYLAWVSGETALWSEWPPERPRDYWWSMKNSYRYYDYKKNPTDIILPLNPAVPEEVKAYVEKRRAEVIEGVWDPFTGPIKDMKGVLRVADRMRLSKDDLYNMDWFVEGYGQLPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y924</accession>
    <name>B1Y924_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Transcriptional regulator</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1327</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350672.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y924"/>
    <dbReference type="STRING" id="444157.Tneu_1327"/>
    <dbReference type="GeneID" id="6165244"/>
    <dbReference type="KEGG" id="tne:Tneu_1327"/>
    <dbReference type="eggNOG" id="arCOG03422">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_174518_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010863">
        <property type="entry name" value="EarA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07381">
        <property type="entry name" value="EarA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="107" mass="11795" checksum="D22531DA91965459" modified="2008-05-20" version="1">MITAVSWRGVGYGRAMMALRRSRVKRDVLKYLCSIYPESAYPALIADAVGASYENVLGALRGLGGRYKAEDSLCGLGLVEEVPVGRVKLYRVRDLEICKAFVDGYET</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y931</accession>
    <name>B1Y931_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit</fullName>
            <ecNumber evidence="4">4.2.1.32</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1334</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I fumarase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.32" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350679.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y931"/>
    <dbReference type="STRING" id="444157.Tneu_1334"/>
    <dbReference type="GeneID" id="6165145"/>
    <dbReference type="KEGG" id="tne:Tneu_1334"/>
    <dbReference type="eggNOG" id="arCOG04406">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098588_0_0_2"/>
    <dbReference type="OrthoDB" id="34134at2157"/>
    <dbReference type="BRENDA" id="4.2.1.2">
        <property type="organism ID" value="6328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008730">
        <property type="term" value="F:L(+)-tartrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.130.10">
        <property type="entry name" value="Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004647">
        <property type="entry name" value="Fe-S_hydro-lyase_TtdB-typ_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036660">
        <property type="entry name" value="Fe-S_hydroAse_TtdB_cat_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00723">
        <property type="entry name" value="ttdB_fumA_fumB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43351">
        <property type="entry name" value="L(+)-TARTRATE DEHYDRATASE SUBUNIT BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43351:SF2">
        <property type="entry name" value="L(+)-TARTRATE DEHYDRATASE SUBUNIT BETA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05683">
        <property type="entry name" value="Fumerase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117457">
        <property type="entry name" value="FumA C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe-S hydro-lyase tartrate dehydratase beta-type catalytic" evidence="3">
        <location>
            <begin position="6"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="201" mass="22147" checksum="842C15EEBC9D3850" modified="2008-05-20" version="1">MATYSLKTPLSSEDVAKLRVGDTLYISGVVVSARDSAHKRMLEHIGRGEALPVDLRGGVIYHAGPVVRKTERGWEVISMGPTTSARMEAFEADVIERLGVKLVVGKGGMGRRTAEAMKKYTAAYAIFTGGAGVLAAKAIKRVVDVYWLDLGVAEAMWVLEVENFGPLTVMIDPTGRNYYDELREEAKRRIPEILKSLEWPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y946</accession>
    <name>B1Y946_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1349</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350694.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y946"/>
    <dbReference type="STRING" id="444157.Tneu_1349"/>
    <dbReference type="GeneID" id="6165300"/>
    <dbReference type="KEGG" id="tne:Tneu_1349"/>
    <dbReference type="eggNOG" id="arCOG05562">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2597877_0_0_2"/>
    <dbReference type="OrthoDB" id="26021at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="79" mass="9346" checksum="EBB74E6EF2119F8C" modified="2008-05-20" version="1">MKEFEKVAELVRRLGGGYVRYVKWSYAPATDTYHLKIYLVKPVEWRVLSEIVKELERGFSVRVYAPHAHALRLDLKKKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9C0</accession>
    <name>B1Y9C0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1424</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350768.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9C0"/>
    <dbReference type="STRING" id="444157.Tneu_1424"/>
    <dbReference type="GeneID" id="6164653"/>
    <dbReference type="KEGG" id="tne:Tneu_1424"/>
    <dbReference type="eggNOG" id="arCOG05659">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2802429_0_0_2"/>
    <dbReference type="OrthoDB" id="25248at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="67" mass="8053" checksum="2F8D2DE39D442470" modified="2008-05-20" version="1">MDEKKRQNVEDVLRRLPVEYTEEEGEIVVKVGKGRRLPESQFRETITELKKMGFKFDPESKTWRKRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9C3</accession>
    <name>B1Y9C3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HAD-superfamily hydrolase, subfamily IA, variant 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1427</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HAD-like hydrolase superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350771.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9C3"/>
    <dbReference type="STRING" id="444157.Tneu_1427"/>
    <dbReference type="GeneID" id="6164538"/>
    <dbReference type="KEGG" id="tne:Tneu_1427"/>
    <dbReference type="eggNOG" id="arCOG02293">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045011_19_3_2"/>
    <dbReference type="OrthoDB" id="31229at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008967">
        <property type="term" value="F:phosphoglycolate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="entry name" value="Putative phosphatase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050155">
        <property type="entry name" value="HAD-like_hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43434">
        <property type="entry name" value="PHOSPHOGLYCOLATE PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43434:SF1">
        <property type="entry name" value="PHOSPHOGLYCOLATE PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01129">
        <property type="entry name" value="C1.5:_HAD__Beta-PGM__Phosphata"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00003">
        <property type="entry name" value="Haloacid_Dehalogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="191" mass="21189" checksum="1CAAED0F291135F6" modified="2008-05-20" version="1">MYVFDLDGTLVESVDAHVAAWLEALRLMGVERRYEEVKPLMGLPARDIAAALFPERAAELAALKNRLFLERYLALVRPYEDVSALERLPRPIAVVTSSSGYVARRVIEAAGLSHLVDFVLGGDEVPRGKPAPDPLYVVGQRFSVDTRDMVVVGDSEYDMRMAEEAGAYGICIARRGVCRGARRVIYSLFEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9C4</accession>
    <name>B1Y9C4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1428</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350772.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9C4"/>
    <dbReference type="STRING" id="444157.Tneu_1428"/>
    <dbReference type="GeneID" id="6165384"/>
    <dbReference type="KEGG" id="tne:Tneu_1428"/>
    <dbReference type="eggNOG" id="arCOG05580">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2629875_0_0_2"/>
    <dbReference type="OrthoDB" id="24537at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="77" mass="8565" checksum="06F0DD2301860673" modified="2008-05-20" version="1">MAADLPQVAEQLRRSKLAEALRIDVVGGRLVVDVETGKVRGYIIAVRRGRVRMRIDGYTIVWDPETDTVTWAGGRGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9C7</accession>
    <name>B1Y9C7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Arginase/agmatinase/formiminoglutamase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1431</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="4">Binds 2 manganese ions per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the arginase family. Agmatinase subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350775.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9C7"/>
    <dbReference type="STRING" id="444157.Tneu_1431"/>
    <dbReference type="GeneID" id="6164671"/>
    <dbReference type="KEGG" id="tne:Tneu_1431"/>
    <dbReference type="eggNOG" id="arCOG01700">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039478_0_2_2"/>
    <dbReference type="OrthoDB" id="7186at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008783">
        <property type="term" value="F:agmatinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033389">
        <property type="term" value="P:putrescine biosynthetic process from arginine, via agmatine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd11593">
        <property type="entry name" value="Agmatinase-like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.800.10">
        <property type="entry name" value="Ureohydrolase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006035">
        <property type="entry name" value="Ureohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020855">
        <property type="entry name" value="Ureohydrolase_Mn_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11358">
        <property type="entry name" value="ARGINASE/AGMATINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11358:SF26">
        <property type="entry name" value="GUANIDINO ACID HYDROLASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00491">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036979">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="Arginase/deacetylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01053">
        <property type="entry name" value="ARGINASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51409">
        <property type="entry name" value="ARGINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0464">Manganese</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="4">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR036979-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="268" mass="29576" checksum="008E9DBBAA6DC244" modified="2008-05-20" version="1">MLKNVCGPGDVKLFGAPMEDTLSFRPGTRFAPQRIRAILPYLEYTTILGNPRGPLCDLGDVELLQGAPAENVARIERFIQKVEPPFIMVGGEHTATLAALNALRPDTYVHIDAHFDLRDEWPPGQKLSHATFARRAHERLGFYAIYIGVRAYDDEERRYAEEAQFYVLEGPDFSREDVSDAVSTASGRVYLSLDIDVLDPSEAPGVGTPEAGGLSYRKLEYLLADLILSLKPAAVDIMEYSPPNDVSDITAVKAVRLIMHMASLLGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9C8</accession>
    <name>B1Y9C8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cation diffusion facilitator family transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1432</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350776.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9C8"/>
    <dbReference type="STRING" id="444157.Tneu_1432"/>
    <dbReference type="GeneID" id="6164506"/>
    <dbReference type="KEGG" id="tne:Tneu_1432"/>
    <dbReference type="eggNOG" id="arCOG01478">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076277_0_0_2"/>
    <dbReference type="OrthoDB" id="8907at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:monoatomic cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1510.10">
        <property type="entry name" value="Cation efflux protein transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1350">
        <property type="entry name" value="Cation efflux protein, cytoplasmic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002524">
        <property type="entry name" value="Cation_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036837">
        <property type="entry name" value="Cation_efflux_CTD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058533">
        <property type="entry name" value="Cation_efflux_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027469">
        <property type="entry name" value="Cation_efflux_TMD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050291">
        <property type="entry name" value="CDF_Transporter"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01297">
        <property type="entry name" value="CDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43840">
        <property type="entry name" value="MITOCHONDRIAL METAL TRANSPORTER 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43840:SF30">
        <property type="entry name" value="TRANSPORT PROTEIN, HYPOTHETICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01545">
        <property type="entry name" value="Cation_efflux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160240">
        <property type="entry name" value="Cation efflux protein cytoplasmic domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161111">
        <property type="entry name" value="Cation efflux protein transmembrane domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="76"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="111"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="169"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="Cation efflux protein transmembrane" evidence="7">
        <location>
            <begin position="14"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="293" mass="32541" checksum="3BFC7CCB8B3EBD7F" modified="2008-05-20" version="1">MNPSVRLWLASLYLFVMGTISLAYTMVELLLGVMYGSLLVTSDAFHGFMDSAIAYVSGFGLYYASRRGRSFPWEIYRLESLLTLLSAFAVLGFYTYLLATSVRLSGEPTPLWMTTLLLAGGGLTYLMYLWERHNYNTLRLEIIKADALHAKIDTALSAASAAAVVVSNLLHLTVAEVAAVFVIYGYVLYELVKLSKEAMYGILGALYKDPDLEEKIKEGLAELGRPVIVKIRRAGSFLVVYALVAVSPDMTVGRLHALRTRAIRAISKMHPLIVHVDIKIVPKYKRGREGRHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9D2</accession>
    <name>B1Y9D2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1436</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350780.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9D2"/>
    <dbReference type="STRING" id="444157.Tneu_1436"/>
    <dbReference type="GeneID" id="6165069"/>
    <dbReference type="KEGG" id="tne:Tneu_1436"/>
    <dbReference type="eggNOG" id="arCOG05631">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115255_0_0_2"/>
    <dbReference type="OrthoDB" id="91586at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="206" mass="22650" checksum="1DE6AEA3A88D2E04" modified="2008-05-20" version="1">MATASRASLEQEIYLRSLTGYLVGQNLLEGYKRVAVITYPDRICSAMAAALATSYIAKGNYRDEAAAVFTYEDGKEAEVAKKVVDYKPDIVYLSFGGEQKLSYVAEITKKILSALSQAGYKGALGIHVRVWLATKQLSAVLADKKLADYLASLKEVRLFTADVPNRKFLFHKVKIEGGAAKPEKYKEVEITAEHAKLLSISLPPPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9N9</accession>
    <name>B1Y9N9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Restriction endonuclease type IV Mrr domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0003</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349383.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9N9"/>
    <dbReference type="STRING" id="444157.Tneu_0003"/>
    <dbReference type="GeneID" id="6164775"/>
    <dbReference type="KEGG" id="tne:Tneu_0003"/>
    <dbReference type="eggNOG" id="arCOG04306">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088484_0_0_2"/>
    <dbReference type="OrthoDB" id="31513at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007560">
        <property type="entry name" value="Restrct_endonuc_IV_Mrr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34314">
        <property type="entry name" value="CRENARCHAEAL PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34314:SF6">
        <property type="entry name" value="DUF3782 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04471">
        <property type="entry name" value="Mrr_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Restriction endonuclease type IV Mrr" evidence="1">
        <location>
            <begin position="2"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="193" mass="21351" checksum="C9B3CA2B931D3C50" modified="2008-05-20" version="1">MGARFERYVVDLLPALGLTPKATRYKIYRDGVEVGEVDILAVDQNGNTYAVEVKAGKVDVSGVRQAYVNAKLIGAKPLVIARGYADENARQLAKELEVEVVLLPDYIFLSIDDLYTAFTNAFARFLATAVAVAAALDKREMDAVESCPDFQCLCEKVDCETFFRKLPREAKNYELLVSVVKAVRHLPALCGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Q2</accession>
    <name>B1Y9Q2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">V-type ATPase, D subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0016</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the V-ATPase D subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Q2"/>
    <dbReference type="STRING" id="444157.Tneu_0016"/>
    <dbReference type="KEGG" id="tne:Tneu_0016"/>
    <dbReference type="eggNOG" id="arCOG04101">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069688_2_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.3240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002699">
        <property type="entry name" value="V_ATPase_D"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00309">
        <property type="entry name" value="V_ATPase_subD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11671">
        <property type="entry name" value="V-TYPE ATP SYNTHASE SUBUNIT D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01813">
        <property type="entry name" value="ATP-synt_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB38974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="202" mass="23748" checksum="9567C632996CCDFA" modified="2008-05-20" version="1">MGQVAFRPPPSRLELIRLRRQLVLFQRMKKTLEDARNSTIQRIRALIPDLERLRREIADGFVEVATNFKIAIAKTGIDRVENIAELTPKTVKVELVNRGTHTGLEVSNYVTYPTYSLATEAAELDVALVKMRELLKKLVEFAEKETLFYTLLRRVREYQRMINSIDYVIIPRIRENMQYIRLALEEGEREEFIRRKIITSRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9R5</accession>
    <name>B1Y9R5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0029</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349409.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9R5"/>
    <dbReference type="STRING" id="444157.Tneu_0029"/>
    <dbReference type="GeneID" id="6166110"/>
    <dbReference type="KEGG" id="tne:Tneu_0029"/>
    <dbReference type="eggNOG" id="arCOG05458">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1567217_0_0_2"/>
    <dbReference type="OrthoDB" id="28771at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB38987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="170" mass="18347" checksum="DA58B34A2C516184" modified="2008-05-20" version="1">MIDLYIAGAVAVLSAMGGIFIKDLKALSIFTVLIAAAAFLLAYAVGMPAVVLGLVGLSTAAVKMGRAGKRVVERKVRTYRSRRRLAGLEESVRAIPENILDVVPAGSVRAIHPKIVGLVALINDAYSKGYTVEEPAWFKVVRQYLASVGPQYTADRAKVISEYEVVELER</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9U2</accession>
    <name>RL21_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein eL21</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">50S ribosomal protein L21e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl21e</name>
        <name type="ordered locus">Tneu_1568</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL21 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350911.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9U2"/>
    <dbReference type="SMR" id="B1Y9U2"/>
    <dbReference type="STRING" id="444157.Tneu_1568"/>
    <dbReference type="GeneID" id="6166229"/>
    <dbReference type="KEGG" id="tne:Tneu_1568"/>
    <dbReference type="eggNOG" id="arCOG04129">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_103610_1_1_2"/>
    <dbReference type="OrthoDB" id="6295at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.70:FF:000001">
        <property type="entry name" value="60S ribosomal protein L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.70">
        <property type="entry name" value="Ribosomal protein L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00369">
        <property type="entry name" value="Ribosomal_eL21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001147">
        <property type="entry name" value="Ribosomal_eL21"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022856">
        <property type="entry name" value="Ribosomal_eL21_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018259">
        <property type="entry name" value="Ribosomal_eL21_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036948">
        <property type="entry name" value="Ribosomal_eL21_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003303">
        <property type="entry name" value="PRK04306.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20981">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01157">
        <property type="entry name" value="Ribosomal_L21e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="Translation proteins SH3-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01171">
        <property type="entry name" value="RIBOSOMAL_L21E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000121517" description="Large ribosomal subunit protein eL21">
        <location>
            <begin position="1"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="3"/>
    <sequence length="100" mass="11453" checksum="8CC0BCA5DF62F155" modified="2008-05-20" version="1">MVKRTHGYRYKSRKLLRKKPRERGMSGLSRLLYEYKPGDKVVIDIDPTYITTAPHRRYQGKVGVVVGTRGRAYVIETYLGDKKKIVITTADHLVPYQGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9W9</accession>
    <name>B1Y9W9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Large ribosomal subunit protein uL14</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpl14</name>
        <name evidence="8" type="ordered locus">Tneu_1596</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uL14 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350938.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9W9"/>
    <dbReference type="STRING" id="444157.Tneu_1596"/>
    <dbReference type="GeneID" id="6166273"/>
    <dbReference type="KEGG" id="tne:Tneu_1596"/>
    <dbReference type="eggNOG" id="arCOG04095">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_095071_3_0_2"/>
    <dbReference type="OrthoDB" id="23569at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00337">
        <property type="entry name" value="Ribosomal_uL14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.150.20:FF:000007">
        <property type="entry name" value="50S ribosomal protein L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.150.20">
        <property type="entry name" value="Ribosomal protein L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01367">
        <property type="entry name" value="Ribosomal_uL14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000218">
        <property type="entry name" value="Ribosomal_uL14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019971">
        <property type="entry name" value="Ribosomal_uL14_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019972">
        <property type="entry name" value="Ribosomal_uL14_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036853">
        <property type="entry name" value="Ribosomal_uL14_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006344">
        <property type="entry name" value="PRK08571.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03673">
        <property type="entry name" value="uL14_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11761">
        <property type="entry name" value="50S/60S RIBOSOMAL PROTEIN L14/L23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11761:SF8">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00238">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01374">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50193">
        <property type="entry name" value="Ribosomal protein L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00049">
        <property type="entry name" value="RIBOSOMAL_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="144" mass="15698" checksum="73C2A1DB1D110CC4" modified="2008-05-20" version="1">MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQVFRAIVVRQRKPFRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA03</accession>
    <name>B1YA03_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1630</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350972.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA03"/>
    <dbReference type="STRING" id="444157.Tneu_1630"/>
    <dbReference type="GeneID" id="6165890"/>
    <dbReference type="KEGG" id="tne:Tneu_1630"/>
    <dbReference type="eggNOG" id="arCOG01619">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023205_2_3_2"/>
    <dbReference type="OrthoDB" id="275427at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd19072">
        <property type="entry name" value="AKR_AKR3F1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="entry name" value="NADP-dependent oxidoreductase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NAD(P)_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43638:SF3">
        <property type="entry name" value="ALDEHYDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43638">
        <property type="entry name" value="OXIDOREDUCTASE, ALDO/KETO REDUCTASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000097">
        <property type="entry name" value="AKR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="NAD(P)-linked oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADP-dependent oxidoreductase" evidence="1">
        <location>
            <begin position="15"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="270" mass="30430" checksum="E6A2A5996E579126" modified="2008-05-20" version="1">MKRACFRLVGCIPAVGLGTWGIGGGYWAPDRSRDAEWVDALRYAVERGISLIDTAEMYGGGHAEELVGLAIRGFPREELFLVSKVWPSHARYEDVLKSAERSAARLGTYIDLYLLHWPSDVPICETVRAFEALVDRGLIRFFGVSNFTLDQIKEAEACAKRYELAAVQNRYSLYYRRDEADVVPYALANGIMYMAYTPLEKGALARDRRLAEVGRRYGATATQIALAWYVKRGVVPIPKAEKRAHIDEIAGSLEVELREEDFLELARWSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA35</accession>
    <name>B1YA35_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 9">peptidylprolyl isomerase</fullName>
            <ecNumber evidence="4 9">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_0051</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FKBP-type PPIase family.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="4 9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349430.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA35"/>
    <dbReference type="STRING" id="444157.Tneu_0051"/>
    <dbReference type="GeneID" id="6165121"/>
    <dbReference type="KEGG" id="tne:Tneu_0051"/>
    <dbReference type="eggNOG" id="arCOG00980">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073526_1_0_2"/>
    <dbReference type="OrthoDB" id="8615at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040825">
        <property type="entry name" value="FKBP26_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054016">
        <property type="entry name" value="FKBP26_IF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001179">
        <property type="entry name" value="PPIase_FKBP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048261">
        <property type="entry name" value="SlpA/SlyD-like_ins_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47861">
        <property type="entry name" value="FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE SLYD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47861:SF3">
        <property type="entry name" value="FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE SLYD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18046">
        <property type="entry name" value="FKBP26_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22199">
        <property type="entry name" value="FKBP26_IF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54534">
        <property type="entry name" value="FKBP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50059">
        <property type="entry name" value="FKBP_PPIASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 9 11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PPIase FKBP-type" evidence="10">
        <location>
            <begin position="6"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="229" mass="25267" checksum="248EF13A806A9BC2" modified="2008-05-20" version="1">MPLAKGDYILLDYTVVVKDENKVVETTQESVAKEAGIYKPEEIYGPRLVILGETPLWEPVEAALLKADEGQDFEVEVPPEKAYGVRDPGKVKVVSIRDFHRHGIVPSVGDVVDFEGQRARVVSISGGRVVLDFNHPLAGKTFIVRGRVAKKLTSVEEKAVALLRLYLPRVPEEKMKASLEGGVLAVSLPAEVLLYERIGGVLLQYASEVSAKFSDVKKVRFIEEVELKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA49</accession>
    <name>B1YA49_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AMMECR1 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349444.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA49"/>
    <dbReference type="STRING" id="444157.Tneu_0065"/>
    <dbReference type="GeneID" id="6165095"/>
    <dbReference type="KEGG" id="tne:Tneu_0065"/>
    <dbReference type="eggNOG" id="arCOG01336">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1381452_0_0_2"/>
    <dbReference type="OrthoDB" id="25187at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.700.20">
        <property type="entry name" value="Hypothetical protein ph0010, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036071">
        <property type="entry name" value="AMMECR1_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002733">
        <property type="entry name" value="AMMECR1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027485">
        <property type="entry name" value="AMMECR1_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01871">
        <property type="entry name" value="AMMECR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143447">
        <property type="entry name" value="AMMECR1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMMECR1" evidence="1">
        <location>
            <begin position="25"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="198" mass="22568" checksum="8F1B84B7103E31FC" modified="2008-05-20" version="1">MSLGQILVSHVRSAMLAKLRGQPLPEAHPVLSGMRSGVFVTVEAIVRSGGFERREVRGSLGVVEPYRDLAYDTAKIAAKLVYSIPRFTEFDLRRSVVEVTLVGALREWDGELEGFGWGREGVYAVSRRGMAVVLPQTMVERRILGDALHRYVESLVGPPERLYRFDTQIFYELHPEGEVIERELWRSRVIRQFLEVVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA62</accession>
    <name>B1YA62_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Fe-S oxidoreductase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0078</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349457.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA62"/>
    <dbReference type="STRING" id="444157.Tneu_0078"/>
    <dbReference type="GeneID" id="6164684"/>
    <dbReference type="KEGG" id="tne:Tneu_0078"/>
    <dbReference type="eggNOG" id="arCOG02584">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119366_0_0_2"/>
    <dbReference type="OrthoDB" id="36424at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005358">
        <property type="entry name" value="Puta_zinc/iron-chelating_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03692">
        <property type="entry name" value="CxxCxxCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="134" mass="15326" checksum="E339D1F04BF3F235" modified="2008-05-20" version="1">MFSCPIGCPSDCCRFDSPEDAPVVLEEEIPVLQREAEKIGVKLNFVPYGEYNGVKLHRWVIEGWCPFYRGKCTIHEKKPLSCRIYPLVLNLKTGEIYLSDRCLWVKINGPKPLDHFPSEKAALKKLVVKLKIHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA99</accession>
    <name>B1YA99_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0115</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349494.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA99"/>
    <dbReference type="STRING" id="444157.Tneu_0115"/>
    <dbReference type="GeneID" id="6165905"/>
    <dbReference type="KEGG" id="tne:Tneu_0115"/>
    <dbReference type="eggNOG" id="arCOG07434">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_277031_0_0_2"/>
    <dbReference type="OrthoDB" id="28890at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="1100" mass="122831" checksum="D263BF8169E6782C" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAB7</accession>
    <name>B1YAB7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Basic membrane lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1644</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the BMP lipoprotein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350985.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAB7"/>
    <dbReference type="STRING" id="444157.Tneu_1644"/>
    <dbReference type="GeneID" id="6165476"/>
    <dbReference type="KEGG" id="tne:Tneu_1644"/>
    <dbReference type="eggNOG" id="arCOG00258">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038813_0_0_2"/>
    <dbReference type="OrthoDB" id="26626at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd06354">
        <property type="entry name" value="PBP1_PrnA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050957">
        <property type="entry name" value="BMP_lipoprotein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003760">
        <property type="entry name" value="PnrA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34296:SF2">
        <property type="entry name" value="ABC TRANSPORTER GUANOSINE-BINDING PROTEIN NUPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34296">
        <property type="entry name" value="TRANSCRIPTIONAL ACTIVATOR PROTEIN MED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02608">
        <property type="entry name" value="Bmp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="Periplasmic binding protein-like I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 8" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="domain" description="ABC transporter substrate-binding protein PnrA-like" evidence="7">
        <location>
            <begin position="45"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="403" mass="43545" checksum="34B6CF4502EC9CA9" modified="2008-05-20" version="1">MNKIWIALGVVVAIAVIGALLATQSAQKQQPTTQPPPQKTIYVIYDIGGRGDLSFNDMAYLGASKAARDFGLGLKEVQSKTQDDYVPNLRAAARSGDAALVVAVGFLMTDALKQVSQEYPAVHFAIIDGYVPNRSNVVSVLYRENEGSALVGALAALTAYYYNCTKVGIVLGMEIPVLWKFEIGYAYGVRWAERYIKQRFGKDVKFDVLYVYTGSFNDPAKGKQAAEVMLSQGVCVIYQAAGATGLGVFEAVAEAGKRAGRNMGPPFAIGVDADQDYIKPGFILASMMKRVDVGVYRAAKMAVEGTFKGGVLELGLKEGGVSVSTLDDLGQFLEIGIRAGAVKQEDAQRIIDTVKEMRSKIPTWVWEAVDKLRQDIVAGVEKVPLPTTQDQVVKLRRELGLAG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAC8</accession>
    <name>RL1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein uL1</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl1</name>
        <name type="ordered locus">Tneu_1655</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds directly to 23S rRNA. Probably involved in E site tRNA release.</text>
    </comment>
    <comment type="function">
        <text evidence="1">Protein L1 is also a translational repressor protein, it controls the translation of its operon by binding to its mRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350996.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAC8"/>
    <dbReference type="SMR" id="B1YAC8"/>
    <dbReference type="STRING" id="444157.Tneu_1655"/>
    <dbReference type="GeneID" id="6165584"/>
    <dbReference type="KEGG" id="tne:Tneu_1655"/>
    <dbReference type="eggNOG" id="arCOG04289">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062853_4_0_2"/>
    <dbReference type="OrthoDB" id="10382at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00403">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.790:FF:000005">
        <property type="entry name" value="50S ribosomal protein L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01318_A">
        <property type="entry name" value="Ribosomal_uL1_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002143">
        <property type="entry name" value="Ribosomal_uL1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023674">
        <property type="entry name" value="Ribosomal_uL1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028364">
        <property type="entry name" value="Ribosomal_uL1/biogenesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016095">
        <property type="entry name" value="Ribosomal_uL1_3-a/b-sand"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023669">
        <property type="entry name" value="Ribosomal_uL1_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023673">
        <property type="entry name" value="Ribosomal_uL1_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003244">
        <property type="entry name" value="PRK04203.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36427">
        <property type="entry name" value="54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36427:SF3">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL1M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00687">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002155">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56808">
        <property type="entry name" value="Ribosomal protein L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01199">
        <property type="entry name" value="RIBOSOMAL_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0678">Repressor</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <keyword id="KW-0810">Translation regulation</keyword>
    <keyword id="KW-0820">tRNA-binding</keyword>
    <feature type="chain" id="PRO_1000141474" description="Large ribosomal subunit protein uL1">
        <location>
            <begin position="1"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="222" mass="24837" checksum="04A195CA061F8DFA" modified="2008-05-20" version="1">MSAVINKEALLAKIEEALRRGKPRRFRQSVELILVLREVDLSKPENRINLLVELPHPPKPNKVAAFAHGAFEVQAKNAGVDAVISRDQVEGLSGNKRAIRKLAKQYDFFIAPPDLMPLLGRVVGPIFGPRGKMPEVAPPNVDVKSLVERLRRSVRVKLRNEPVIKVRIGAEGQKPEEVLENALAVLEDVNRKFSLRQYLKDVYIKKTMGPPVKAKALEVLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAH4</accession>
    <name>B1YAH4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1703</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAH4"/>
    <dbReference type="STRING" id="444157.Tneu_1703"/>
    <dbReference type="KEGG" id="tne:Tneu_1703"/>
    <dbReference type="eggNOG" id="arCOG05655">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1163835_0_0_2"/>
    <dbReference type="OrthoDB" id="28700at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="181"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="229" mass="24257" checksum="88A86336108B69BD" modified="2008-05-20" version="1">MILSRAPLRPMSLLFRLCRWAPPLLYLTLVHVWLLPVLFLLYVGGAVGGFVFLATAASAVAAAVVGLLPGRKGAGGLDLLELFHRRGGVCVAAPVLYVASYAALAFVATTSLYLYTTPLIVIEGAPASAATSAEGLGNHTAALVGNVTEVVLHVRAVGSVAPGGRFIVVVKGDVFWGSAGWVLYTALWAAFFYSALAVALVLAWRLVMRSAELARRAEVFYEKAREILS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAH5</accession>
    <name>B1YAH5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ArnR1-like winged helix-turn-helix domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1704</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351043.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAH5"/>
    <dbReference type="STRING" id="444157.Tneu_1704"/>
    <dbReference type="GeneID" id="6166116"/>
    <dbReference type="KEGG" id="tne:Tneu_1704"/>
    <dbReference type="eggNOG" id="arCOG01062">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_179023_1_0_2"/>
    <dbReference type="OrthoDB" id="24028at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="91" mass="10431" checksum="74991949640ABCC6" modified="2008-05-20" version="1">MKRRGRFYPDLYVVTKILLLLADGRSRREAALLSGVSYSRFQQYVEYLKERGFVTGDEELRLTPKGAEAAARLAQLIKELTGEEPRGVKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAJ5</accession>
    <name>B1YAJ5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pre-mRNA processing ribonucleoprotein, binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1726</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NOP5/NOP56 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351063.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAJ5"/>
    <dbReference type="STRING" id="444157.Tneu_1726"/>
    <dbReference type="GeneID" id="6164966"/>
    <dbReference type="KEGG" id="tne:Tneu_1726"/>
    <dbReference type="eggNOG" id="arCOG01923">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015495_1_0_2"/>
    <dbReference type="OrthoDB" id="11877at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031428">
        <property type="term" value="C:box C/D methylation guide snoRNP complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030515">
        <property type="term" value="F:snoRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.246.90:FF:000007">
        <property type="entry name" value="Pre mRNA splicing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.460">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.660">
        <property type="entry name" value="Helix hairpin bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.246.90">
        <property type="entry name" value="Nop domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029012">
        <property type="entry name" value="Helix_hairpin_bin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045056">
        <property type="entry name" value="Nop56/Nop58"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048896">
        <property type="entry name" value="Nop5_56-rel_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047099">
        <property type="entry name" value="Nop5_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042239">
        <property type="entry name" value="Nop_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002687">
        <property type="entry name" value="Nop_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036070">
        <property type="entry name" value="Nop_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012976">
        <property type="entry name" value="NOSIC"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF011121">
        <property type="entry name" value="PRK14552.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10894">
        <property type="entry name" value="NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10894:SF0">
        <property type="entry name" value="NUCLEOLAR PROTEIN 56"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01798">
        <property type="entry name" value="Nop"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21572">
        <property type="entry name" value="Nop5_56-rel_N_Arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00931">
        <property type="entry name" value="NOSIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89124">
        <property type="entry name" value="Nop domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51358">
        <property type="entry name" value="NOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0687">Ribonucleoprotein</keyword>
    <feature type="domain" description="Nop" evidence="3">
        <location>
            <begin position="265"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="378"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="397"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="420" mass="47444" checksum="FBF0EFFB172E1B1F" modified="2008-05-20" version="1">MAKVYIATDVLGFFAVDEGGNLVDKELYERRPEAIAARLLELEKSNYVPELVSLVERLRDRGAKVVVEDPELARKLVSAVKGAEIVAESPSPVLVAFRQNFPRYLQAVGLSWEDYRSFLFEVSDLVTRLKLRQAVEKRDLFIAQAISTLDDVDKILNLIASRIREWYGLHFPELEELVRDNREYVKIVYHIGHRSGITEESLRKIAAEMPEERVKRIVESARKSIGAEMSEWDLAQLKSYAEAYLKLDAYRESLANYIDEAMKEVAPNIRELVGPLLGARLIKLAGGLTRMAFLPASTIQVLGAEKALFRALRTGGKPPKHGVIFQYPEIFRSPRWQRGKIARALAAKLAIAAKADAFTGNFIAPRLKEELMKRIQEIKTLYAKPPPKAPQQQPSAKTPPPPPPPRRGGERRPPPRRGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAL7</accession>
    <name>B1YAL7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Extracellular solute-binding protein family 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0139</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349517.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAL7"/>
    <dbReference type="STRING" id="444157.Tneu_0139"/>
    <dbReference type="GeneID" id="6164664"/>
    <dbReference type="KEGG" id="tne:Tneu_0139"/>
    <dbReference type="eggNOG" id="arCOG00220">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026974_1_3_2"/>
    <dbReference type="OrthoDB" id="30917at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019808">
        <property type="term" value="F:polyamine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015846">
        <property type="term" value="P:polyamine transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13590">
        <property type="entry name" value="PBP2_PotD_PotF_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001188">
        <property type="entry name" value="Sperm_putr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30222">
        <property type="entry name" value="SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30222:SF17">
        <property type="entry name" value="SPERMIDINE_PUTRESCINE-BINDING PERIPLASMIC PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019574">
        <property type="entry name" value="Periplasmic_polyamine_BP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00909">
        <property type="entry name" value="SPERMDNBNDNG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="374" mass="41584" checksum="D33B015F85AE7FD0" modified="2008-05-20" version="1">MVTRRKLLAGAVAAAVVAALGGSVLLSRGPEKRAATLGGQLAVYNYSYYIDKDLLTEFERETGVKVIYQEFESGEEAYAALLRGGGGYDLVVVPDMYLKEVIKGGYVRKMDHGRLANINNIDQAFFDNPNDPGLQHSIPYAFGTTGFAVNYHAMAVEAGRKLESWGDLFDFGLLEKMRNKVAMLEEFVEPVMAAKYALGIDPNDWSQAAVDKVAELLKKQKGYIRGYMGVSQIVPAIAAGELWVSQIWSGDAATARDEFIKHAGEKNADKFEYVLPKPMTHRWVDFMVIPRDAKNIDAAYAFIDFLLRPENSARITKASYYPTALKRQLLEKHLSPDILQDPTVFPPEGAKLIYLNYTDEMIKAVEKISYAVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAN6</accession>
    <name>B1YAN6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Archaeal Type IV pilin N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0158</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349536.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAN6"/>
    <dbReference type="STRING" id="444157.Tneu_0158"/>
    <dbReference type="GeneID" id="6165461"/>
    <dbReference type="KEGG" id="tne:Tneu_0158"/>
    <dbReference type="eggNOG" id="arCOG03740">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1763940_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="147" mass="15574" checksum="696A59A54656E77B" modified="2008-05-20" version="1">MRGTAVSLQIAILMAVILTIAVALASYLYTTLQASLHYMYIAVTYAYVYPKGNGSEVKICFTTGGSGVLEVVGVELNGRWAAEVKTYVHGVERGAVAAGEIGYIKAYFPGLSVQPGELPVGRLATRQGFSFFFTPAVVDREGVCPGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAR2</accession>
    <name>B1YAR2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pyridoxal-5'-phosphate-dependent protein beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349562.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAR2"/>
    <dbReference type="STRING" id="444157.Tneu_0185"/>
    <dbReference type="GeneID" id="6165017"/>
    <dbReference type="KEGG" id="tne:Tneu_0185"/>
    <dbReference type="eggNOG" id="arCOG01430">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021018_1_0_2"/>
    <dbReference type="OrthoDB" id="10138at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050214">
        <property type="entry name" value="Cys_Synth/Cystath_Beta-Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="TrpB-like_PALP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="TrpB-like_PALP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10314">
        <property type="entry name" value="CYSTATHIONINE BETA-SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="Tryptophan synthase beta subunit-like PLP-dependent enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tryptophan synthase beta chain-like PALP" evidence="1">
        <location>
            <begin position="64"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="335" mass="37199" checksum="2A25AD6315D43373" modified="2008-05-20" version="1">MCVEYFRRLIGDGRYSISTADEARCFSALFDREVSPGEEVTLGELMPRPKPNRVFDSPVELFTAGLPTPLLKISEAPREAYAKLEWYNPFSASVKDRTVYYLLKSTRGDWVVEVSSGNVAVALSALGNVLGKRVKVYLPTAGRYVAPFLEYLGAEYQILDVSMTIEALELLEKDVREGAAHPNQFANDINFLAHLRTAAELDWQLSSVGKKPNYIVAALGTSGHASALGFYFGVRYGARLIAVQPKDWIPGIRRVESGMKWIKMVHAEIVEVSLREALEGVRAFAKRFGLLIGPSAGAVYTAFTRLTAEGTYVMVFPDSLFKYGLMLEQFRQVSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAS2</accession>
    <name>B1YAS2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">KaiC-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0195</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349572.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAS2"/>
    <dbReference type="STRING" id="444157.Tneu_0195"/>
    <dbReference type="GeneID" id="6164734"/>
    <dbReference type="KEGG" id="tne:Tneu_0195"/>
    <dbReference type="eggNOG" id="arCOG05482">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097794_0_0_2"/>
    <dbReference type="OrthoDB" id="39720at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014774">
        <property type="entry name" value="KaiC-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637">
        <property type="entry name" value="UPF0273 PROTEIN TM_0370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637:SF1">
        <property type="entry name" value="UPF0273 PROTEIN TM_0370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06745">
        <property type="entry name" value="ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01874">
        <property type="entry name" value="DNAREPAIRADA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KaiC-like" evidence="3">
        <location>
            <begin position="4"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF06745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="259" mass="28378" checksum="DB2944118532F156" modified="2008-05-20" version="1">MGFKTGVDPLDELMPGGIPPGYLVLVEGFLGVGKSFIATSIAASAAKSGAPILFFSIDAMADEVLEDVKRRGAPADGVIVVDGFAAPNERFSKLKPPAKHRLETPDAFALLNKLAEFSADFRGGVVVVDSLNEVLMRSPGSALELFRAFKIFAKYTSSIVVATAHTDVEEVYGVLATAEHLADVIVQIEVDPNLEEMGLYVRRMRVARARRMRVPHDWIHFEIADGRVVEIDVKTMLKMLNRQLKEMGLEIQQRQPKGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="117" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAT0</accession>
    <name>B1YAT0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="14 16">Reverse gyrase</fullName>
            <ecNumber evidence="14">5.6.2.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="primary">rgy</name>
        <name evidence="22" type="ordered locus">Tneu_0204</name>
    </gene>
    <organism evidence="22 23">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="22" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="16">Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process, increasing the linking number in steps of +1. Binds to single-stranded DNA, transiently cleaves and then rejoins the ends, introducing a positive supercoil in the process. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate. Involved in rewinding DNA strands in regions of the chromosome that have opened up to allow replication, transcription, DNA repair and/or for DNA protection.</text>
    </comment>
    <comment type="function">
        <text evidence="14">Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process, increasing the linking number in steps of +1. Binds to single-stranded DNA, transiently cleaves and then rejoins the ends, introducing a positive supercoil in the process. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate. Probably involved in rewinding DNA strands in regions of the chromosome that have opened up to allow replication, transcription, DNA repair and/or for DNA protection.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="24">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="14">Binds 1 or 2 zinc ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 14">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="14">Introduction of positive supercoils requires the cooperation of both domains. The helicase-like domain probably does not directly unwind DNA, but more likely acts by driving ATP-dependent conformational changes within the whole enzyme. A beta hairpin in the 'latch' region of the N-terminal domain plays a regulatory role in the enzyme, repressing topoisomerase activity in the absence of ATP and preventing the enzyme from acting as an ATP-independent relaxing enzyme; it also helps to coordinate nucleotide hydrolysis by the ATPase domain with the supercoiling activity of the topoisomerase domain.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="14">This enzyme is the only unique feature of hyperthermophilic bacteria/archaea known and seems to be essential for adaptation to life at high temperatures. It may play a role in stabilization of DNA at high temperatures.</text>
    </comment>
    <comment type="similarity">
        <text evidence="14">In the C-terminal section; belongs to the type IA topoisomerase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12 14">In the N-terminal section; belongs to the DEAD box helicase family. DDVD subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.-" evidence="14"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349580.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAT0"/>
    <dbReference type="STRING" id="444157.Tneu_0204"/>
    <dbReference type="GeneID" id="6165452"/>
    <dbReference type="KEGG" id="tne:Tneu_0204"/>
    <dbReference type="eggNOG" id="arCOG01526">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002886_0_0_2"/>
    <dbReference type="OrthoDB" id="30963at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008094">
        <property type="term" value="F:ATP-dependent activity, acting on DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0160097">
        <property type="term" value="F:reverse gyrase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd17924">
        <property type="entry name" value="DDXDc_reverse_gyrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18798">
        <property type="entry name" value="SF2_C_reverse_gyrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00186">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.510.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.460.10">
        <property type="entry name" value="Topoisomerase I, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.290.10">
        <property type="entry name" value="Topoisomerase I, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01125">
        <property type="entry name" value="Reverse_gyrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005736">
        <property type="entry name" value="Reverse_gyrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003601">
        <property type="entry name" value="Topo_IA_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013497">
        <property type="entry name" value="Topo_IA_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013824">
        <property type="entry name" value="Topo_IA_cen_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013826">
        <property type="entry name" value="Topo_IA_cen_sub3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023405">
        <property type="entry name" value="Topo_IA_core_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003602">
        <property type="entry name" value="Topo_IA_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040569">
        <property type="entry name" value="Znf_Rg"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01054">
        <property type="entry name" value="rgy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43505">
        <property type="entry name" value="REVERSE GYRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43505:SF1">
        <property type="entry name" value="REVERSE GYRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01131">
        <property type="entry name" value="Topoisom_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17915">
        <property type="entry name" value="zf_Rg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00417">
        <property type="entry name" value="PRTPISMRASEI"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00437">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00436">
        <property type="entry name" value="TOP1Bc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56712">
        <property type="entry name" value="Prokaryotic type I DNA topoisomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52039">
        <property type="entry name" value="TOPO_IA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52036">
        <property type="entry name" value="ZF_RG_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 14 16" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="17" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3 14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10 14 16" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="14" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11 14 16" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 14 16" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 14 16" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="23" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 14 16" id="KW-0799">Topoisomerase</keyword>
    <keyword evidence="7 14 16" id="KW-0862">Zinc</keyword>
    <keyword evidence="6 14 15" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RG N-terminal-type" evidence="20">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="19">
        <location>
            <begin position="92"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="domain" description="Toprim" evidence="18">
        <location>
            <begin position="635"/>
            <end position="809"/>
        </location>
    </feature>
    <feature type="domain" description="Topo IA-type catalytic" evidence="21">
        <location>
            <begin position="825"/>
            <end position="1223"/>
        </location>
    </feature>
    <feature type="region of interest" description="Topoisomerase I" evidence="14">
        <location>
            <begin position="631"/>
            <end position="1231"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="17">
        <location>
            <begin position="256"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-tyrosine intermediate" evidence="14">
        <location>
            <position position="967"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00043976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00049360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01380"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU004026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS52036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="PROSITE" id="PS52039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="EMBL" id="ACB39159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="1231" mass="138272" checksum="0DE357F7B8D9268B" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAU2</accession>
    <name>DPHB_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Diphthine synthase</fullName>
            <ecNumber evidence="1">2.1.1.98</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Diphthamide biosynthesis methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">dphB</name>
        <name type="ordered locus">Tneu_0216</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-[(3S)-amino-3-carboxypropyl]-L-histidyl-[translation elongation factor 2] + 3 S-adenosyl-L-methionine = diphthine-[translation elongation factor 2] + 3 S-adenosyl-L-homocysteine + 3 H(+)</text>
            <dbReference type="Rhea" id="RHEA:36415"/>
            <dbReference type="Rhea" id="RHEA-COMP:9749"/>
            <dbReference type="Rhea" id="RHEA-COMP:10172"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:73995"/>
            <dbReference type="ChEBI" id="CHEBI:82696"/>
            <dbReference type="EC" id="2.1.1.98"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Protein modification; peptidyl-diphthamide biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the diphthine synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.98" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349592.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAU2"/>
    <dbReference type="SMR" id="B1YAU2"/>
    <dbReference type="STRING" id="444157.Tneu_0216"/>
    <dbReference type="GeneID" id="6164789"/>
    <dbReference type="KEGG" id="tne:Tneu_0216"/>
    <dbReference type="eggNOG" id="arCOG04161">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066040_0_0_2"/>
    <dbReference type="OrthoDB" id="39139at2157"/>
    <dbReference type="UniPathway" id="UPA00559"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004164">
        <property type="term" value="F:diphthine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017183">
        <property type="term" value="P:protein histidyl modification to diphthamide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11647">
        <property type="entry name" value="DHP5_DphB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="entry name" value="Cobalt-precorrin-4 Transmethylase, Domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="entry name" value="Methyltransferase, Cobalt-precorrin-4 Transmethylase, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01084">
        <property type="entry name" value="Diphthine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004551">
        <property type="entry name" value="Dphthn_synthase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10882:SF0">
        <property type="entry name" value="DIPHTHINE METHYL ESTER SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10882">
        <property type="entry name" value="DIPHTHINE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036432">
        <property type="entry name" value="Diphthine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="Tetrapyrrole methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0489">Methyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000136877" description="Diphthine synthase">
        <location>
            <begin position="1"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="111"/>
            <end position="112"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01084"/>
        </source>
    </evidence>
    <sequence length="253" mass="27450" checksum="21165BB9552D4244" modified="2008-05-20" version="1">MFYIIGVGPAPGFITEKAAQILREADCVFYEDYTGPIDVETLRRYARSPPTRLTRRDLEDESGRRVLECLSRGKTAVLATAGDPMLATSHAALISIARSRGYSVEVVPGVSIVCAAFSASCLSIYKLGGVATVTYPRGGVYSARPYELVEQNLARGLHTLLLLDVREDGVFMPPRDAAEIMLKLEEREKRGVFDKGRPVVVVPKLGWGGRPAYLPLGELLGSDLEGPAVFIVPGGLSPVERECIEALSVLKSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAU5</accession>
    <name>B1YAU5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Circadian clock protein, KaiC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0219</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349595.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAU5"/>
    <dbReference type="GeneID" id="6165014"/>
    <dbReference type="KEGG" id="tne:Tneu_0219"/>
    <dbReference type="eggNOG" id="arCOG01171">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023669_2_0_2"/>
    <dbReference type="OrthoDB" id="27015at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014774">
        <property type="entry name" value="KaiC-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022443">
        <property type="entry name" value="KaiC-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010624">
        <property type="entry name" value="KaiC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03881">
        <property type="entry name" value="KaiC_arch_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637:SF2">
        <property type="entry name" value="PROTEIN GVPD 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637">
        <property type="entry name" value="UPF0273 PROTEIN TM_0370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06745">
        <property type="entry name" value="ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01874">
        <property type="entry name" value="DNAREPAIRADA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51146">
        <property type="entry name" value="KAIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KaiC" evidence="3">
        <location>
            <begin position="2"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="267" mass="30313" checksum="0AF41CFC130FAE0C" modified="2008-05-20" version="1">MRRIPTGIEVLDKALEGGVPQGSWVVVTGEPGVGKSILCIHFAYAGLRSGDPVVYVTTEQEFRDVMEQARQLGMDFSQFSVYNIAWKKEPEELPEIVVIDIFGLLKVARQLTEKAREESPDKVRRYAALSIDTLIEAINEAYEILAVAKERGSPERHVRLVIDSMSAFWVDKPVMARKYSYQLKIATHRENVTAMLTSQYAPTTRQAYGFGLEHIADGVIHMWMDDVETAKEIRRWLIIKKMRMTAHSARAYRVKIEPGRGMVLDEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAX2</accession>
    <name>B1YAX2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1754</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351091.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAX2"/>
    <dbReference type="STRING" id="444157.Tneu_1754"/>
    <dbReference type="GeneID" id="6165308"/>
    <dbReference type="KEGG" id="tne:Tneu_1754"/>
    <dbReference type="eggNOG" id="arCOG05650">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1943931_0_0_2"/>
    <dbReference type="OrthoDB" id="24756at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="125" mass="14222" checksum="0A589FABB325434C" modified="2008-05-20" version="1">MRAVAFLKVDRDYGVVFLDLKLAGLREAEGAPARYAQTLEAIQQDLVKIMPKLKDMYTLDVALEDTAGRRFVARFYTYGGIVYYAVLISEKNKLGSLLRKLTAHGWRLLVLIEKKAVKKNETDVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB10</accession>
    <name>B1YB10_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">NADH-ubiquinone oxidoreductase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1792</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the complex I subunit 3 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351129.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB10"/>
    <dbReference type="STRING" id="444157.Tneu_1792"/>
    <dbReference type="GeneID" id="6165120"/>
    <dbReference type="KEGG" id="tne:Tneu_1792"/>
    <dbReference type="eggNOG" id="arCOG01557">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_147805_1_0_2"/>
    <dbReference type="OrthoDB" id="51573at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1610">
        <property type="entry name" value="NADH:ubiquinone/plastoquinone oxidoreductase, chain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000440">
        <property type="entry name" value="NADH_UbQ/plastoQ_OxRdtase_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038430">
        <property type="entry name" value="NDAH_ubi_oxred_su3_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00507">
        <property type="entry name" value="Oxidored_q4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="59"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="84"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="119" mass="12886" checksum="849EB67D78858B20" modified="2008-05-20" version="1">MVAVVVFVALFLALLLALVLISYLLAPRKPSDVKHRRFEAGGPPYGTVQRRLVMQYIGYIYLVTVVEAALGLAIVAVLTNNYPLPLALSIALLMAAVAAVVARYYKTLADARRWGGGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB33</accession>
    <name>B1YB33_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">5'-nucleotidase SurE</fullName>
            <ecNumber evidence="4">3.1.3.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Nucleoside 5'-monophosphate phosphohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">surE</name>
        <name evidence="6" type="ordered locus">Tneu_1816</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a ribonucleoside 5'-phosphate + H2O = a ribonucleoside + phosphate</text>
            <dbReference type="Rhea" id="RHEA:12484"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18254"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58043"/>
            <dbReference type="EC" id="3.1.3.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="4">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the SurE nucleotidase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.5" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351152.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB33"/>
    <dbReference type="STRING" id="444157.Tneu_1816"/>
    <dbReference type="GeneID" id="6164686"/>
    <dbReference type="KEGG" id="tne:Tneu_1816"/>
    <dbReference type="eggNOG" id="arCOG02303">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045192_1_3_2"/>
    <dbReference type="OrthoDB" id="26873at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008253">
        <property type="term" value="F:5'-nucleotidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1210.10">
        <property type="entry name" value="Survival protein SurE-like phosphatase/nucleotidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00060">
        <property type="entry name" value="SurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030048">
        <property type="entry name" value="SurE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002828">
        <property type="entry name" value="SurE-like_Pase/nucleotidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036523">
        <property type="entry name" value="SurE-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF010544">
        <property type="entry name" value="PRK13934.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00087">
        <property type="entry name" value="surE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30457">
        <property type="entry name" value="5'-NUCLEOTIDASE SURE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30457:SF0">
        <property type="entry name" value="PHOSPHATASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G01070)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01975">
        <property type="entry name" value="SurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64167">
        <property type="entry name" value="SurE-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Survival protein SurE-like phosphatase/nucleotidase" evidence="5">
        <location>
            <begin position="2"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="265" mass="28587" checksum="0B82FC97283C8D2D" modified="2008-05-20" version="1">MILVTNDDGVHSPGLRLLHRFASRLGPVDVVAPESPKSAVGLGITLHKPLRMYEVDLCGFKAYATSGTPSDTIYLATYGLGRSYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSAYVDSWGDVLNDGEALSLMESAVYATAEYVTRRGMPKGVDVISVNFPRRLKKGVKAKLVKAAKLRYAQQVERRVDPRGSAYYWLYGVNLDPEPDTDVYVVLKEGNIAVTPLTLNMNSLDGGGAADLEELRRLLDHVNRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB58</accession>
    <name>B1YB58_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0236</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349610.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB58"/>
    <dbReference type="STRING" id="444157.Tneu_0236"/>
    <dbReference type="GeneID" id="6165960"/>
    <dbReference type="KEGG" id="tne:Tneu_0236"/>
    <dbReference type="eggNOG" id="arCOG05493">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1801764_0_0_2"/>
    <dbReference type="OrthoDB" id="25976at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="143" mass="16048" checksum="D2D37876EEAFAB5F" modified="2008-05-20" version="1">MHRVYERRVEIPIRISKGADEQARIRKLERWPREAGTSVVLDESGSNFGKLVQIYAADYGLEVGEKKWDIKTEGDAVRARLEIPLLKAGEAKGRAVMEAAIPKTPAGEEGNNYVYKAEVEYYIEIDEQVLAESTTSGMVEFSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB80</accession>
    <name>B1YB80_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0258</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349632.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB80"/>
    <dbReference type="STRING" id="444157.Tneu_0258"/>
    <dbReference type="GeneID" id="6165320"/>
    <dbReference type="KEGG" id="tne:Tneu_0258"/>
    <dbReference type="eggNOG" id="arCOG06989">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_192663_0_0_2"/>
    <dbReference type="OrthoDB" id="27929at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="67" mass="6815" checksum="7E6ECB13362B48E4" modified="2008-05-20" version="1">MKTGLVVALSLAAVVLGGLYLVSTLSNPSLDPAILARDLGISIASLATGIAAPVLHRKFTENPEGTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB96</accession>
    <name>B1YB96_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0275</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349648.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB96"/>
    <dbReference type="STRING" id="444157.Tneu_0275"/>
    <dbReference type="GeneID" id="6165712"/>
    <dbReference type="KEGG" id="tne:Tneu_0275"/>
    <dbReference type="eggNOG" id="arCOG01572">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097040_1_0_2"/>
    <dbReference type="OrthoDB" id="46244at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="197" mass="21694" checksum="437FC46911ECDBAE" modified="2008-05-20" version="1">MAVWFFVYHVAVSLLIAVLGFVLGRLLRLLLVRLLLRLGFDDWFRNFNIGRALLRSGYTAGEFFGSVAAWLTYLLSILLAAAYLSLNFGYTEAYGLIATVIGVYLFGFVKFFVISILGFILVDGFVEYIYKGALSKSEVVGPVAEYIRVILYLVVITFALEQGGINVATLSAMLTPITWGLTAAVVAVLVAEALKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBC4</accession>
    <name>B1YBC4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0304</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349676.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBC4"/>
    <dbReference type="GeneID" id="6166050"/>
    <dbReference type="KEGG" id="tne:Tneu_0304"/>
    <dbReference type="eggNOG" id="arCOG09799">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1381454_0_0_2"/>
    <dbReference type="OrthoDB" id="29287at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="192" mass="21175" checksum="18711E29A70E05E8" modified="2008-05-20" version="1">MRLGVVLGLAIALAVAVVLVVSSAVQPPANEEVSVLRLFISPENGSAVGRWELCGVRIYGRGAFYKAGEVIQTPLKDIPDLPARAREQIKRWEPSEGWEPFGKAEVDTYVYDFYLDIREGPVIQGVEIREMNISYIGSPTEPYPVAAGGRVRWMVDVKAVTSRNATVFFICGSDKEQVAKKAQEIHSLLARK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="92" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBD3</accession>
    <name>B1YBD3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">2-dehydropantoate 2-reductase</fullName>
            <ecNumber evidence="3 11">1.1.1.169</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7 11">Ketopantoate reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Tneu_0313</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the NAD(P)H-dependent reduction of ketopantoate into pantoic acid.</text>
    </comment>
    <comment type="function">
        <text evidence="11">Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(R)-pantoate + NAD(+) = 2-dehydropantoate + NADH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:61292"/>
            <dbReference type="ChEBI" id="CHEBI:11561"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="9">
            <dbReference type="Rhea" id="RHEA:61294"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16233"/>
            <dbReference type="ChEBI" id="CHEBI:11561"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.169"/>
        </reaction>
        <physiologicalReaction direction="right-to-left" evidence="8">
            <dbReference type="Rhea" id="RHEA:16235"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 11">Cofactor biosynthesis; coenzyme A biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the ketopantoate reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.169" evidence="3 11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349685.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBD3"/>
    <dbReference type="STRING" id="444157.Tneu_0313"/>
    <dbReference type="GeneID" id="6166312"/>
    <dbReference type="KEGG" id="tne:Tneu_0313"/>
    <dbReference type="eggNOG" id="arCOG04139">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031468_0_0_2"/>
    <dbReference type="OrthoDB" id="201845at2157"/>
    <dbReference type="UniPathway" id="UPA00241"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008677">
        <property type="term" value="F:2-dehydropantoate 2-reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.1040.10:FF:000017">
        <property type="entry name" value="2-dehydropantoate 2-reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="entry name" value="N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003710">
        <property type="entry name" value="ApbA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050838">
        <property type="entry name" value="Ketopantoate_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013752">
        <property type="entry name" value="KPA_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013332">
        <property type="entry name" value="KPR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00745">
        <property type="entry name" value="apbA_panE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43765:SF2">
        <property type="entry name" value="2-DEHYDROPANTOATE 2-REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43765">
        <property type="entry name" value="2-DEHYDROPANTOATE 2-REDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02558">
        <property type="entry name" value="ApbA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08546">
        <property type="entry name" value="ApbA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="6-phosphogluconate dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="5 11" id="KW-0521">NADP</keyword>
    <keyword evidence="6 11 14" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ketopantoate reductase N-terminal" evidence="12">
        <location>
            <begin position="3"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="Ketopantoate reductase C-terminal" evidence="13">
        <location>
            <begin position="150"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00032024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047506"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00048196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00056765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU362068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF08546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB39264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="282" mass="29761" checksum="B9DD34837E485DB6" modified="2008-05-20" version="1">MFAVVGMGAVGSLLAYFLNGAGVEPYAVSRTRCERYVFCDGGCRELRVRHVGRAPPEVRYSLVAVKGPDTADALSAVSGVPVLFQNGIGGLELARRIFPSAAAAVVTYGVYREGCRAELRGRGEIILPRDAAEVGEALARGGAAVRIVEDVEPYRWAKLVVNAAINPVTAVLQAPNGVLLENAWARALAEKLAGEAASVAAAVGYPVEGAFDAVLQVARATAQNISSMAQDLARCRPTEVDFINGAVVKYGGERGVPTPYNHAVYALVKALEERCSSRSRTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBE2</accession>
    <name>B1YBE2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Cytochrome bd ubiquinol oxidase subunit I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0322</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349694.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBE2"/>
    <dbReference type="STRING" id="444157.Tneu_0322"/>
    <dbReference type="GeneID" id="6165399"/>
    <dbReference type="KEGG" id="tne:Tneu_0322"/>
    <dbReference type="eggNOG" id="arCOG02721">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030555_3_3_2"/>
    <dbReference type="OrthoDB" id="41618at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070069">
        <property type="term" value="C:cytochrome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016682">
        <property type="term" value="F:oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019646">
        <property type="term" value="P:aerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002585">
        <property type="entry name" value="Cyt-d_ubiquinol_oxidase_su_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30365:SF14">
        <property type="entry name" value="CYTOCHROME BD MENAQUINOL OXIDASE SUBUNIT I-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30365">
        <property type="entry name" value="CYTOCHROME D UBIQUINOL OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01654">
        <property type="entry name" value="Cyt_bd_oxida_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4" id="KW-0349">Heme</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="15"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="58"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="86"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="126"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="221"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="264"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="396"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="437"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="489"/>
            <end position="512"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="530" mass="56958" checksum="89106C793B581C7E" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBF1</accession>
    <name>B1YBF1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0331</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349703.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBF1"/>
    <dbReference type="STRING" id="444157.Tneu_0331"/>
    <dbReference type="GeneID" id="6165117"/>
    <dbReference type="KEGG" id="tne:Tneu_0331"/>
    <dbReference type="eggNOG" id="arCOG05371">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_985596_0_0_2"/>
    <dbReference type="OrthoDB" id="42924at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="180"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="246"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="282" mass="30405" checksum="FF315DE7EC576835" modified="2008-05-20" version="1">MGLARYLVVRTLKNRWVLLWGGLWSLFWVAMGAFIFTKGIAKSPYAAQYARSYVAGWLDSVVITVVAAVSVALLYSMIYSTAAVPYLLRFGRLRPLKYVASYYGAMFTTSLILVAAVGTANWLLMWRGLKDSGISVSLADVAPKDALALLHTAGAVAVFTAFAAALLFLLSLLALKAVKAASWLPFTPLIFNMLFYYSYLYVEHSPLSLAANPFTAAQALIITAYAGLERPYAAITSSNALDVPAWALAVSISGWAAALSLAAALLVSKVRYAPPDLLREGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBG4</accession>
    <name>B1YBG4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Polysulphide reductase NrfD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1849</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NrfD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351185.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBG4"/>
    <dbReference type="STRING" id="444157.Tneu_1849"/>
    <dbReference type="GeneID" id="6164783"/>
    <dbReference type="KEGG" id="tne:Tneu_1849"/>
    <dbReference type="eggNOG" id="arCOG02026">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045348_3_1_2"/>
    <dbReference type="OrthoDB" id="375554at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052049">
        <property type="entry name" value="Electron_transfer_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005614">
        <property type="entry name" value="NrfD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34856">
        <property type="entry name" value="PROTEIN NRFD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34856:SF2">
        <property type="entry name" value="PROTEIN NRFD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03916">
        <property type="entry name" value="NrfD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="38"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="115"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="143"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="177"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="223"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="262"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="288"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="341"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="10">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="377" mass="42147" checksum="BB2A8FCEBF112A70" modified="2008-05-20" version="1">MKPSALLLGMLVIGVILTAIGIWGWFMRYNNMYAGYLWSFMVITYAFFAASATGSSLVTAMHTVFGYNGGFKKVARYLIAISLITALPAFPTIIGDLLNPSAFMYMFTSVNPESRMAWMGILYVIYSLILLIELILEMRHKMGVGIGIFALAVQLLTLMNLGAIFGSSYGVPAWYGVFSPVLFVAAAFLLGFAFQIVGVSIAEKVYYGNVRADVKDLLFRVHAKGIVTVLLVFLFLLFWYFAVGWFSPPVYVAQQEMFNYSLWTIVLGGLVSLALASAALAKRSLGTLVFTSLVLIVVVFTSLIYYVLYGQIGQAIWLYDFKAPPDVLKMTVEEFFSQYDWMPALMSPGLWLLLYPLAVKLLALKEDERPRRLFILR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBI3</accession>
    <name>B1YBI3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type II secretion system protein E</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1870</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351204.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBI3"/>
    <dbReference type="STRING" id="444157.Tneu_1870"/>
    <dbReference type="GeneID" id="6165050"/>
    <dbReference type="KEGG" id="tne:Tneu_1870"/>
    <dbReference type="eggNOG" id="arCOG01817">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005379_2_2_2"/>
    <dbReference type="OrthoDB" id="33500at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01130">
        <property type="entry name" value="VirB11-like_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050921">
        <property type="entry name" value="T4SS_GSP_E_ATPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30486">
        <property type="entry name" value="TWITCHING MOTILITY PROTEIN PILT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30486:SF6">
        <property type="entry name" value="TYPE IV PILUS RETRACTATION ATPASE PILT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="2">
        <location>
            <begin position="238"/>
            <end position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="492" mass="55811" checksum="15430246FED3E871" modified="2008-05-20" version="1">MGAGVDGLLEILDEYEISELVHAIVYVDRDGFRRYRAVEPPLSKEEAETLQRLKRAVQNVGEVRDGVLKLARERRVEYLEELARRAAAEFKIKVDERAWGKLLYYLRRDLLGYGVLDPLVRDPYIEDVHVDGPGAVYIWHSRWESLKTDIVLTAEELDSYVQKFSALVGKSVSYADPILEGMLPEGYRLELATPPVSPRGPSFVIRKYFVSPITLVDMVKTGTISADAVAYLWLMLDYGRNIVIVGPTGAGKTTLLNALLYLIRPDAKILTIEDTREINIVHEHWQALLTRPSRGEGVRDVSAFDLLAVAMRSRPDYVVVGEIRGEEAYVLFQAFGSGHAGATTMHAETIEDAVRRLLTRPMHVPPMLIGLAHVFVRIMRVKVGGQIVRRAVEIAENMGVARGGRPRLHYVFRWNPERDLLEQVEESRHLESISRTRFVPLEKLREEYSRRRELIALMVEKGYSTPYVVAKIFTQYHLNPQKALEAVRAGSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBI9</accession>
    <name>B1YBI9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cation transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1876</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351210.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBI9"/>
    <dbReference type="STRING" id="444157.Tneu_1876"/>
    <dbReference type="TCDB" id="2.A.47.6.2">
        <property type="family name" value="the divalent anion:na(+) symporter (dass) family"/>
    </dbReference>
    <dbReference type="GeneID" id="6164930"/>
    <dbReference type="KEGG" id="tne:Tneu_1876"/>
    <dbReference type="eggNOG" id="arCOG04052">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_822987_0_0_2"/>
    <dbReference type="OrthoDB" id="29035at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012443">
        <property type="entry name" value="DUF1646"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07854">
        <property type="entry name" value="DUF1646"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="141"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="229"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="257"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="290"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="322"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="351" mass="36811" checksum="3B84DFEC5B37FAC6" modified="2008-05-20" version="1">MELVLQVVFLVLLVALPLASRRVEHNLELFFLGVGVVAASVGGIWSLHLLEEALLHPVAVYQPGVGYVPVGITQVVLLAGLAFYLLRRRLAAWAGALARPGVLAALVLALGLSSSVVSAVVAAAVLAELLAFARAPHGYKAVAAVSGAYAIGAGAALLPLGEPLSAIAVAKLRQGFFYLVDVLLDVVLILVVFFALYTYFALARRRGAGAEVEPYEPELREVFARAARVYVFIFALTILGEFFKPLAAAVSGLGREALYLFGAVSAVADNATLVATLVGPEMAPEALRSFLTSLLIAGGFTVPGNVPNIVLAGALKIGFREWLRLALPVGIPVFTAAGLYTLALLPRPPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBJ9</accession>
    <name>B1YBJ9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1886</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351220.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBJ9"/>
    <dbReference type="STRING" id="444157.Tneu_1886"/>
    <dbReference type="GeneID" id="6166319"/>
    <dbReference type="KEGG" id="tne:Tneu_1886"/>
    <dbReference type="eggNOG" id="arCOG01073">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062658_5_1_2"/>
    <dbReference type="OrthoDB" id="104705at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006753">
        <property type="term" value="P:nucleoside phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019693">
        <property type="term" value="P:ribose phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03424">
        <property type="entry name" value="NUDIX_ADPRase_Nudt5_UGPPase_Nudt14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.79.10">
        <property type="entry name" value="Nucleoside Triphosphate Pyrophosphohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11839:SF18">
        <property type="entry name" value="NUDIX HYDROLASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11839">
        <property type="entry name" value="UDP/ADP-SUGAR PYROPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="Nudix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="3">
        <location>
            <begin position="30"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="172" mass="18819" checksum="6EF876341E880F7F" modified="2008-05-20" version="1">MEEVIYRGRKFTLVRRARQVGGGVVWGEYLVHPGAVAVLALNGGKVLLVKQFRGALGQWTLEVPAGTLEPGEDPGEAAVREMVEETGYRPLRLEHLLDFHPTPGVSNELIRIYYTDALEHVGVGGRDPGEVDMEVVEVKPAELLGMVDRGEIKDGKTIVAALVAWKRGLLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBM0</accession>
    <name>B1YBM0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">phosphoribosylamine--glycine ligase</fullName>
            <ecNumber evidence="2">6.3.4.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Glycinamide ribonucleotide synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Phosphoribosylglycinamide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_1907</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the GARS family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.13" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351241.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBM0"/>
    <dbReference type="STRING" id="444157.Tneu_1907"/>
    <dbReference type="GeneID" id="6164905"/>
    <dbReference type="KEGG" id="tne:Tneu_1907"/>
    <dbReference type="eggNOG" id="arCOG04415">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027420_3_0_2"/>
    <dbReference type="OrthoDB" id="146558at2157"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004637">
        <property type="term" value="F:phosphoribosylamine-glycine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009113">
        <property type="term" value="P:purine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.600.10">
        <property type="entry name" value="Phosphoribosylglycinamide synthetase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020561">
        <property type="entry name" value="PRibGlycinamid_synth_ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000115">
        <property type="entry name" value="PRibGlycinamide_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020560">
        <property type="entry name" value="PRibGlycinamide_synth_C-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037123">
        <property type="entry name" value="PRibGlycinamide_synth_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020562">
        <property type="entry name" value="PRibGlycinamide_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00877">
        <property type="entry name" value="purD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43472">
        <property type="entry name" value="PHOSPHORIBOSYLAMINE--GLYCINE LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43472:SF1">
        <property type="entry name" value="PHOSPHORIBOSYLAMINE--GLYCINE LIGASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01071">
        <property type="entry name" value="GARS_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02843">
        <property type="entry name" value="GARS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02844">
        <property type="entry name" value="GARS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01209">
        <property type="entry name" value="GARS_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01210">
        <property type="entry name" value="GARS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="PreATP-grasp domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="Rudiment single hybrid motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 12" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="11">
        <location>
            <begin position="113"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00038345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00042242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00042864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB40822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="478" mass="52894" checksum="AE6CE4D79FB10F08" modified="2008-05-20" version="1">MEKVLIVGDGAREHAIAWALERSGVVINAVVGHRNPGIEEVARRTGGRLYLGSPTDPGTVVKAAEDSSPDLVVIGPEEPLFAGVSDALRERGFRTLGASRRLSIIEMRKDFARSLQWKYGVPGRLIYGVFKDVEEAYRFSRSVGAVAIKPIRQAGGKGVRVIYGDAAYLDFDEVYRRGAEDVLKQLAGYRDVDTAVLVEEAVWGVEFTVQALTDGESMFFFPPVQDNPHAYEYGVGPECGGMGTVSPLPFLEEGEVEEAKRAVELTVKALGEELGERYVGVISGQMMLTARGPVIIEYYSRLGDPEALNALYLYGGDAYTLFSLAADGKLHKAERRFREEHTVVKALAPLGYPHRRDVARGRRIYVDWDVIKREGCLVFFSSVEERDGAYVTLGSRALEILAPGRTAEEAYQRSERCMSAVGGDGVYYRRDIGSPEYMSSMAAKAEKVRAVYRWRRERGLGGRVVVWEPGVGLREYKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="97" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBM4</accession>
    <name>B1YBM4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Amidophosphoribosyltransferase</fullName>
            <shortName evidence="8">ATase</shortName>
            <ecNumber evidence="3 8">2.4.2.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Glutamine phosphoribosylpyrophosphate amidotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Tneu_1911</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>5-phospho-beta-D-ribosylamine + L-glutamate + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + L-glutamine + H2O</text>
            <dbReference type="Rhea" id="RHEA:14905"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58681"/>
            <dbReference type="EC" id="2.4.2.14"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="10">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="11">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.14" evidence="3 8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351245.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBM4"/>
    <dbReference type="STRING" id="444157.Tneu_1911"/>
    <dbReference type="MEROPS" id="C44.001"/>
    <dbReference type="GeneID" id="6164919"/>
    <dbReference type="KEGG" id="tne:Tneu_1911"/>
    <dbReference type="eggNOG" id="arCOG00093">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022389_3_3_2"/>
    <dbReference type="OrthoDB" id="5976at2157"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004044">
        <property type="term" value="F:amidophosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009113">
        <property type="term" value="P:purine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="entry name" value="Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRTase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005854">
        <property type="entry name" value="PurF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11907">
        <property type="entry name" value="AMIDOPHOSPHORIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13522">
        <property type="entry name" value="GATase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000485">
        <property type="entry name" value="Amd_phspho_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="PRTase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="4 8 13" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="11" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 8" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="12">
        <location>
            <begin position="2"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="9">
        <location>
            <position position="2"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="311"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="312"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="348"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="396"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="399"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR000485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB40826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="421" mass="46110" checksum="38289A12BAD0CA09" modified="2008-05-20" version="1">MCGIGAVWGKGAGAAALRMANWLVHRGHEGVGYAYLEGGAVKLGRPPEDAPAAVVHTRYSTSGPYGVSLQPVYARYRDLELAVAFNGTVVNFRQLDSSASFDGEALARSLAREIWERGVEEGVQEVYRKIVGAASTVALTPWGIIAVRDPRGVRPLAVSYDQAGARVASETVALGDGIELAPGVALLYGSRISTWKVDPKPARLCALEYVYFAHPASKLEGRLVADVRRALGRALAEGEEVKADAVAYVPETARHAAAGFAEVLGLEVVDAVVKNRFSGRLFIKPPGERKAEEVFQVVKEYVAGRRIFLVDDSLIRGTNIRAIVWMLKRAGAAEVHVRIASPPIRWPCFFGMDFQRRSELVAWGREVEEVRQIVGADTLRYISMEKFREVLGDSVCYGCFTGVYPQEVDVEWAERELARFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBM6</accession>
    <name>B1YBM6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">N5-carboxyaminoimidazole ribonucleotide mutase</fullName>
            <shortName evidence="3 4">N5-CAIR mutase</shortName>
            <ecNumber evidence="3 4">5.4.99.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">5-(carboxyamino)imidazole ribonucleotide mutase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">purE</name>
        <name evidence="7" type="ordered locus">Tneu_1913</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole + H(+) = 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate</text>
            <dbReference type="Rhea" id="RHEA:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58730"/>
            <dbReference type="ChEBI" id="CHEBI:77657"/>
            <dbReference type="EC" id="5.4.99.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate from 5-amino-1-(5-phospho-D-ribosyl)imidazole (N5-CAIR route): step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the AIR carboxylase family. Class I subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.18" evidence="3 4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351247.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBM6"/>
    <dbReference type="STRING" id="444157.Tneu_1913"/>
    <dbReference type="GeneID" id="6164922"/>
    <dbReference type="KEGG" id="tne:Tneu_1913"/>
    <dbReference type="eggNOG" id="arCOG02464">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094982_2_0_2"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00943"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034023">
        <property type="term" value="F:5-(carboxyamino)imidazole ribonucleotide mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01929">
        <property type="entry name" value="PurE_classI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033747">
        <property type="entry name" value="PurE_ClassI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000031">
        <property type="entry name" value="PurE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024694">
        <property type="entry name" value="PurE_prokaryotes"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01162">
        <property type="entry name" value="purE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23046:SF2">
        <property type="entry name" value="PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23046">
        <property type="entry name" value="PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE CATALYTIC SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00731">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001338">
        <property type="entry name" value="AIR_carboxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01001">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52255">
        <property type="entry name" value="N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="1 3 4" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PurE" evidence="6">
        <location>
            <begin position="1"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR001338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001338-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="160" mass="17081" checksum="F920A0F86093FC27" modified="2008-05-20" version="1">MKVAVIMGSINDLEVMKEALEVLEALGIPYEARVVSAHRTPDFMAEFARGAEEKFDVVIAGAGGAAHLPGMTAAHTPLPVIGVPIPTRHLGGLDSLLSIVQMPRGTPVATVAIGGAANAAFLAARILGVKYPEVREKVKKHMAQMRDEVLSKSFIREFKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBP4</accession>
    <name>B1YBP4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF371 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1931</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351265.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBP4"/>
    <dbReference type="STRING" id="444157.Tneu_1931"/>
    <dbReference type="GeneID" id="6164988"/>
    <dbReference type="KEGG" id="tne:Tneu_1931"/>
    <dbReference type="eggNOG" id="arCOG04171">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_135994_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.630">
        <property type="entry name" value="mth639 domain like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007171">
        <property type="entry name" value="DUF371"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023131">
        <property type="entry name" value="Mth639-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40696:SF1">
        <property type="entry name" value="DUF371 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40696">
        <property type="entry name" value="DUF371 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04027">
        <property type="entry name" value="DUF371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="152" mass="16092" checksum="7709E2DDFA03B775" modified="2008-05-20" version="1">MDVCLERVLRGEAPRDVFTARGHGNITASNTRTLEITKDPFVTRRGDCIVACCSEKAAGELDVVEALAAVGTVVIIIDAGVAWDAVVGLTPRRRPTSRWRIVARRSFYVDDSTVAVGIDKAASGLDRALVAALRGGAPVKITVGVCPGEAFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBS5</accession>
    <name>B1YBS5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-dependent pyridine nucleotide-disulphide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0359</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349729.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBS5"/>
    <dbReference type="STRING" id="444157.Tneu_0359"/>
    <dbReference type="GeneID" id="6164883"/>
    <dbReference type="KEGG" id="tne:Tneu_0359"/>
    <dbReference type="eggNOG" id="arCOG05543">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_878845_0_0_2"/>
    <dbReference type="OrthoDB" id="26124at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052541">
        <property type="entry name" value="SQRD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43755">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43755:SF1">
        <property type="entry name" value="FAD-DEPENDENT PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="313" mass="34827" checksum="9AA6FF61B7599B1E" modified="2008-05-20" version="1">MVRVVVVGGGIAGIYFTYKLLTLTKKAEVVLVEPNPYHNFVIGVPMAYAGLINFSDLLFPLSSLKRVRHVRDRAVSLDAGPSIRLERAFTLRGDYIVLAPGAYKVGTADYWTVEGAEALYQKIVRAPAVRFVVSEFTPVMGFQELAYSIKTRFPEKDVSIHLVYISDDYLFLLEPWRASAARVGVQVSMDPPPPDGLHISVPAVRPHPIAHDLEVNPATMETQIERVFLIGDSSLLRLGLPPVGWGALWQASAAAQAIASEVEKGYIEVEAEEWSAKDPDKFRQWLTYRMTTGTPLAHLKGLYDLWKKLFSTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBU4</accession>
    <name>B1YBU4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Anaerobic ribonucleoside-triphosphate reductase activating protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0379</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349748.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBU4"/>
    <dbReference type="STRING" id="444157.Tneu_0379"/>
    <dbReference type="GeneID" id="6165195"/>
    <dbReference type="KEGG" id="tne:Tneu_0379"/>
    <dbReference type="eggNOG" id="arCOG00952">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078147_2_1_2"/>
    <dbReference type="OrthoDB" id="371936at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012840">
        <property type="entry name" value="NrdG2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034457">
        <property type="entry name" value="Organic_radical-activating"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02495">
        <property type="entry name" value="NrdG2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30352">
        <property type="entry name" value="PYRUVATE FORMATE-LYASE-ACTIVATING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01094">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51257">
        <property type="entry name" value="PROKAR_LIPOPROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="10"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="239" mass="26761" checksum="FE35FE4DC21EBEAB" modified="2008-05-20" version="1">MLAAGWKGISTVDVHGAVTFTLWLCGCNLRCPFCHNWRIAERQNCGELDVERLLDELARAKPYIDYLHVTGGEPLLQAEELRHLFKRAGEAGVARSLNTNATLTKALEKVIDEIDHLATDLKIPDRMYGVPHWQQLWQNFLTSLKTASSRKISIELRIPAANLPLETYAKRIEEVSNALAETEVTVVIQPLLGPPTTDPRDPQWCRQHCNPPPSHLQQLAKLAAALGKVVIKNYGIFTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBW5</accession>
    <name>B1YBW5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hydrogenase expression/formation protein HypE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0401</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HypE family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBW5"/>
    <dbReference type="STRING" id="444157.Tneu_0401"/>
    <dbReference type="KEGG" id="tne:Tneu_0401"/>
    <dbReference type="eggNOG" id="arCOG00636">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049733_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051604">
        <property type="term" value="P:protein maturation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02197">
        <property type="entry name" value="HypE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="entry name" value="PurM-like C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="entry name" value="PurM-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011854">
        <property type="entry name" value="HypE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02124">
        <property type="entry name" value="hypE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30303:SF0">
        <property type="entry name" value="CARBAMOYL DEHYDRATASE HYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30303">
        <property type="entry name" value="HYDROGENASE ISOENZYMES FORMATION PROTEIN HYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005644">
        <property type="entry name" value="Hdrgns_mtr_HypE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="PurM C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="PurM N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PurM-like N-terminal" evidence="2">
        <location>
            <begin position="65"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="domain" description="PurM-like C-terminal" evidence="3">
        <location>
            <begin position="188"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="366" mass="39423" checksum="6F1A88C5D490D56B" modified="2008-05-20" version="1">MYHFERAYILYPSTFLNRGLWPLVIKLSHGSGGVETSEIVEKLFLRRLPEGLKKVAGGLGLDFPDDAAAIPMADGRYLVVTVDAYTVNPPFFPGGDIGMLAASGSINDVLMLGGRPLAMLDSIIAEEGLPYETLDRVVKSFLSVLEAEGVALIGGDFKVMPKGQLDKIVITTVGIGVADRIIVDKPRHGDKIVVSDFVGDHGAVILMLQMGDVDKPEQLQLKSDVKPLTKLMVPLVEKYGEYIHAARDPTRGGLAMVLNDWAKAGGGVIVVEEESLPVRPEVASYAGMLGIDPLYLASEGAAVLAVDPAVAEEVVKFMRGLGFQNARVVGEFREARQHRGYVLLKTVAGGLRILEPPRGDIVPRIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC01</accession>
    <name>B1YC01_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, TrmB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1940</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351274.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC01"/>
    <dbReference type="STRING" id="444157.Tneu_1940"/>
    <dbReference type="GeneID" id="6164443"/>
    <dbReference type="KEGG" id="tne:Tneu_1940"/>
    <dbReference type="eggNOG" id="arCOG00393">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2115570_0_0_2"/>
    <dbReference type="OrthoDB" id="27885at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055767">
        <property type="entry name" value="DUF7343"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF24034">
        <property type="entry name" value="DUF7343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF7343" evidence="1">
        <location>
            <begin position="51"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF24034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="116" mass="12650" checksum="71D1B1252809E7E4" modified="2008-05-20" version="1">MLTAVLLVAQIAALLIAIYAGRSKLRRLINGAQNAAPPAEPLADDLPDIDRAILRLLEERQGVVYQSEIVKELGLPKSTVHKALRRLSEAGYVEIQKRGRLNLVVLKRATSEASAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC26</accession>
    <name>B1YC26_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DNA-directed RNA polymerase subunit Rpo1C</fullName>
            <ecNumber evidence="8">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">DNA-directed RNA polymerase subunit A''</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rpo1C</name>
        <name evidence="8" type="synonym">rpoA2</name>
        <name evidence="10" type="ordered locus">Tneu_1965</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Forms part of the jaw domain.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 12 13">
            <text>RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Part of the RNA polymerase complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the RNA polymerase beta' chain family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351299.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC26"/>
    <dbReference type="STRING" id="444157.Tneu_1965"/>
    <dbReference type="GeneID" id="6164463"/>
    <dbReference type="KEGG" id="tne:Tneu_1965"/>
    <dbReference type="eggNOG" id="arCOG04256">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037097_1_0_2"/>
    <dbReference type="OrthoDB" id="372142at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06528">
        <property type="entry name" value="RNAP_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00411">
        <property type="entry name" value="RNApol_arch_Rpo1C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045867">
        <property type="entry name" value="DNA-dir_RpoC_beta_prime"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007081">
        <property type="entry name" value="RNA_pol_Rpb1_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012757">
        <property type="entry name" value="RPO1C"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02389">
        <property type="entry name" value="RNA_pol_rpoA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19376">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19376:SF32">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04998">
        <property type="entry name" value="RNA_pol_Rpb1_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64484">
        <property type="entry name" value="beta and beta-prime subunits of DNA dependent RNA-polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1 8 10" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="4 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNA polymerase Rpb1" evidence="9">
        <location>
            <begin position="50"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00048552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF04998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="379" mass="42568" checksum="BD5A18BBD1B9F674" modified="2008-05-20" version="1">MISKQELLAKISAVLPQPLYRELENAVKDLDEERALRLIHRVLRLYITSLVDPGEAIGIVTAQSIGEPGTQMILRSFHYAGLREFSMARGLPRLIEIVDARRTPSTPLMFVYLKPPYNKNREAAETVAKRIQQVTLEMLAKEVDVDYVAGTITITLDQEQLKYRGLSLKDVERVVTKTKGKDMAVSMRGSTITVSLTTPDILKMRKIRDKVLQIRISGIKGIRKVVLQHDSKNDEWYIVTEGSNLEAVLQLEEVDQSRTYSNDLHEVEEVLGIEAARALVAQEIKRVLEEQGLDVDIRHMYLVADTMTWSGRLKPIGRHGVVGAKESPLARAAFEVTVKTLVEASVRGEEEQFKGVVENIVAGRYVPVGTGIVRLLMQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="104" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC48</accession>
    <name>B1YC48_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Aspartate--tRNA(Asp) ligase</fullName>
            <ecNumber evidence="9">6.1.1.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Aspartyl-tRNA synthetase</fullName>
            <shortName evidence="9">AspRS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Discriminating aspartyl-tRNA synthetase</fullName>
            <shortName evidence="9">D-AspRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">aspS</name>
        <name evidence="11" type="ordered locus">Tneu_1987</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>tRNA(Asp) + L-aspartate + ATP = L-aspartyl-tRNA(Asp) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:19649"/>
            <dbReference type="Rhea" id="RHEA-COMP:9660"/>
            <dbReference type="Rhea" id="RHEA-COMP:9678"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78516"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="9">Binds 3 Mg(2+) cations per subunit. The strongest magnesium site (Mg1) is bound to the beta- and gamma-phosphates of ATP and four water molecules complete its coordination sphere.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.12" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351321.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC48"/>
    <dbReference type="STRING" id="444157.Tneu_1987"/>
    <dbReference type="GeneID" id="6164744"/>
    <dbReference type="KEGG" id="tne:Tneu_1987"/>
    <dbReference type="eggNOG" id="arCOG00406">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004553_2_1_2"/>
    <dbReference type="OrthoDB" id="5908at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017101">
        <property type="term" value="C:aminoacyl-tRNA synthetase multienzyme complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004815">
        <property type="term" value="F:aspartate-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006422">
        <property type="term" value="P:aspartyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00776">
        <property type="entry name" value="AsxRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04316">
        <property type="entry name" value="ND_PkAspRS_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.930.10:FF:000038">
        <property type="entry name" value="Aspartate--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02075">
        <property type="entry name" value="Asp_tRNA_synth_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004523">
        <property type="entry name" value="Asp-tRNA_synthase_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002312">
        <property type="entry name" value="Asp/Asn-tRNA-synth_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00458">
        <property type="entry name" value="aspS_nondisc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003483">
        <property type="entry name" value="PRK05159.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43450:SF1">
        <property type="entry name" value="ASPARTATE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43450">
        <property type="entry name" value="ASPARTYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01042">
        <property type="entry name" value="TRNASYNTHASP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminoacyl-transfer RNA synthetases class-II family profile" evidence="10">
        <location>
            <begin position="137"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="region of interest" description="Aspartate" evidence="9">
        <location>
            <begin position="192"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="213"/>
            <end position="215"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="352"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="352"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="352"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="355"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="355"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="359"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="400"/>
            <end position="403"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for tRNA discrimination" evidence="9">
        <location>
            <position position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="429" mass="49377" checksum="FA3BAC6A68C60BB1" modified="2008-05-20" version="1">MYPRKTHWTSEITPELHGKEVVLGGWVWELRDLGKVKFIVLRDREGFVQLTLKAGKTPEQVLKLFSELNREDVIVVRGVVEASKIAKRGVEVFPTDLWVLNKAKPLPLDIWSDTPDLATRLRWRSVDLKRPRNLAVFTLSSEVLKEIRQVLYGERFVEVFTPKIIVTSTEGGAELFPVLYFERVAYLSQSPQLYKEQLTASLERVFEIGPAYRAEKHNTDYHLNEFISVDAEAAFMSYQDVMDVLEKITRRVFTAVSKHEAKLKEVGITPIASEISEVPRVDYDEAVDRLSGMGYAVRWGDDLNVEMQRALMKHYGPAYFIVNYPASLRPFYTKRREGDKSESYDLIINGIEVASGATRIHRRDELEEEMRKRGLDPKLFESHLAVFDYGMPPHAGFGLGFNRLITAVLNLDNVRHAVLYPRDRYRVEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC60</accession>
    <name>B1YC60_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Electron-transferring-flavoprotein dehydrogenase</fullName>
            <ecNumber evidence="7">1.5.5.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_2000</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <dbReference type="EC" id="1.5.5.1" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC60"/>
    <dbReference type="STRING" id="444157.Tneu_2000"/>
    <dbReference type="KEGG" id="tne:Tneu_2000"/>
    <dbReference type="eggNOG" id="arCOG00570">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050977_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004174">
        <property type="term" value="F:electron-transferring-flavoprotein dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049398">
        <property type="entry name" value="ETF-QO/FixC_UQ-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039651">
        <property type="entry name" value="FixC-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43624">
        <property type="entry name" value="ELECTRON TRANSFER FLAVOPROTEIN-QUINONE OXIDOREDUCTASE YDIS-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43624:SF2">
        <property type="entry name" value="ELECTRON TRANSFER FLAVOPROTEIN-QUINONE OXIDOREDUCTASE YDIS-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21162">
        <property type="entry name" value="ETFQO_UQ-bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00420">
        <property type="entry name" value="RNGMNOXGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54373">
        <property type="entry name" value="FAD-linked reductases, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD dependent oxidoreductase" evidence="5">
        <location>
            <begin position="8"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="ETF-QO/FixC ubiquinone-binding" evidence="6">
        <location>
            <begin position="179"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF21162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="426" mass="47255" checksum="C070F0EA79DB08E3" modified="2008-05-20" version="1">MLGGVKFDVVVVGAGPAGLAAAYRLALAGFKVVVLERGREPGAKSLYGGRIYTYWLDRYLPEFRRDAPVDRWVKKERVTFLVEDKALTLESTVVEKTSFVTPLTSFVSWMARLAQNAGAKIVTEITVDRLVRDDRGRFIGVQSGSDVLYADYVIDAEGVNRLLLERAGVVEKLKPSQVALGVKEVWKFGDRKILEERLGLAEDEGVAWAVAGLPSNYLPGGGFIYTYKDAIALGVVIYLDSWEKLDTPVYDLVERFRLHPYISPLVRGATLFEYGGHMTPVAGINMAPPRLYYDGLLVAGDAAGFLLHTGVLIRGVDFAVASGILAAEAVREARSPSSEDLSIYEKKLRNSFVLPELERFKEADKLLSGQFLFRDLPLFATEAVHGYFNVGERQKTSFEAAWDASKKTRVNMARLFVNMLKVVRNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC61</accession>
    <name>B1YC61_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">MoaD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_2001</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351334.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC61"/>
    <dbReference type="STRING" id="444157.Tneu_2001"/>
    <dbReference type="GeneID" id="6165947"/>
    <dbReference type="KEGG" id="tne:Tneu_2001"/>
    <dbReference type="eggNOG" id="arCOG00534">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="eggNOG" id="arCOG00536">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069141_0_0_2"/>
    <dbReference type="OrthoDB" id="45235at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00756">
        <property type="entry name" value="MoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00754">
        <property type="entry name" value="Ubl_MoaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.40">
        <property type="entry name" value="Molybdopterin biosynthesis MoaE subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010038">
        <property type="entry name" value="MoaD_arc-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036563">
        <property type="entry name" value="MoaE_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003448">
        <property type="entry name" value="Mopterin_biosynth_MoaE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01687">
        <property type="entry name" value="moaD_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23404">
        <property type="entry name" value="MOLYBDOPTERIN SYNTHASE RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02391">
        <property type="entry name" value="MoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="MoaD/ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54690">
        <property type="entry name" value="Molybdopterin synthase subunit MoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="228" mass="25554" checksum="B2E58F0505975CA8" modified="2008-05-20" version="1">MRIVLKYFSALRDITGKAREELSMEDGARLAQVIDWFFNMYPRAEVFREELLVLVNGRAVDGTYVLQDGDEVAFMPPVSGGGGVVNSPVDLNNEVRKIIEKTAPLGGGGVVIFVGYVKGKVDGAEVNTLEYEAYEPYASQKIKEIEEWAKNQRGVLEAKIYHLVGSLKPGDNTVYVFVSAVNRDTAFKVAREALERVKHEVPIFKLERRSDGEYWVVGDGRRIPRQRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC76</accession>
    <name>B1YC76_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PilT protein domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0441</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349809.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC76"/>
    <dbReference type="GeneID" id="6165972"/>
    <dbReference type="KEGG" id="tne:Tneu_0441"/>
    <dbReference type="eggNOG" id="arCOG02221">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_149092_0_0_2"/>
    <dbReference type="OrthoDB" id="30561at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1010">
        <property type="entry name" value="5'-nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="PIN domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PIN" evidence="1">
        <location>
            <begin position="8"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="151" mass="16864" checksum="972C631A07B229F7" modified="2008-05-20" version="1">MRLGKKLVLDTSVLVEYIVARSPYRGLVESIFQRAARGELELYVNAVTLAETLYVASRISDTAGVEDPNGEARNFATWVTRRADVVDVDIHTSIFAGELKKRLKIALPDCLVIATARRIGGTALFKKIEKEMRDAVDEIRRLGAAFLEELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC79</accession>
    <name>B1YC79_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CRISPR-associated protein, APE2256 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349812.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC79"/>
    <dbReference type="STRING" id="444157.Tneu_0445"/>
    <dbReference type="GeneID" id="6166030"/>
    <dbReference type="KEGG" id="tne:Tneu_0445"/>
    <dbReference type="eggNOG" id="arCOG01935">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082641_1_0_2"/>
    <dbReference type="OrthoDB" id="27780at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10770">
        <property type="entry name" value="Hypothetical protein VC1899 like domain (Restriction endonuclease-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013442">
        <property type="entry name" value="SSO1393-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02619">
        <property type="entry name" value="putative CRISPR-associated protein, APE2256 family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09651">
        <property type="entry name" value="Cas_APE2256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRISPR system ring nuclease SSO1393-like" evidence="1">
        <location>
            <begin position="35"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="222" mass="23957" checksum="9FAC759BCD25740D" modified="2008-05-20" version="1">MRPVFFAVTVGISLLVNAQRDGARDIVEYAVQNPRRASAELNTLLSLRERWPALFSRPAAALYATDTDDGRRAAEALAQAVERLIQVKAQVKVIQQLGKDFEKGLLNLAKEVARDVRTARAGGALAYVVATGGFKPESTYAAAYLAGANGVAYIHETFREAVLLPMTPLDVADAVKKFHRGEIDEGLLARALGLDVQHLEAIGLLTPDRALNPLLAELLGDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCB2</accession>
    <name>B1YCB2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">dTDP-glucose 4,6-dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0478</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349845.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCB2"/>
    <dbReference type="STRING" id="444157.Tneu_0478"/>
    <dbReference type="GeneID" id="6166142"/>
    <dbReference type="KEGG" id="tne:Tneu_0478"/>
    <dbReference type="eggNOG" id="arCOG01371">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007383_1_14_2"/>
    <dbReference type="OrthoDB" id="4907at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008460">
        <property type="term" value="F:dTDP-glucose 4,6-dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009225">
        <property type="term" value="P:nucleotide-sugar metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05246">
        <property type="entry name" value="dTDP_GD_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.25.10">
        <property type="entry name" value="UDP-galactose 4-epimerase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005888">
        <property type="entry name" value="dTDP_Gluc_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01181">
        <property type="entry name" value="dTDP_gluc_dehyt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43000">
        <property type="entry name" value="DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD-dependent epimerase/dehydratase" evidence="2">
        <location>
            <begin position="3"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="320" mass="36271" checksum="F2B5F582C2B41680" modified="2008-05-20" version="1">MRVVVIGGAGFMGSNFVRHVAGRGEVLVYDKLTYAGRLENLRGVEVEFVRGDVANFELLFYVLSRFRPDVVVNFAAETHVDRSINDPAPFLTTNVWGVYSVLEAARRLGFLYVHISTDEVYGDLAGGGEADESWPMRPSSPYSASKAAGDLLVQAYGRTYGVRFRIVRPCNNYGPFQHPEKLIPRTIVRLLLGRPATIYGDGRQVRDWLYVGDFVRALEVVIERGVDGGIYNVCAGQPASVREVVERIASALGGSVKYVRGRPGEDMRYAMRCDRLRGLGWRPEVSLEEGLRRTVEWYRENEWWWRPLLDEYVLADEPWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCD0</accession>
    <name>B1YCD0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0498</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCD0"/>
    <dbReference type="STRING" id="444157.Tneu_0498"/>
    <dbReference type="KEGG" id="tne:Tneu_0498"/>
    <dbReference type="eggNOG" id="arCOG05094">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1178166_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10620">
        <property type="entry name" value="PH0156-like domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160945">
        <property type="entry name" value="PH0156-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="235" mass="26302" checksum="4BE8FD4E28815845" modified="2008-05-20" version="1">MRAVVLLLEGQTEEILYYTLLKRVYKAQEANCAETPEKLRDLLEPLGRRKCLKVRQVYVAMCNCSGVENIKETLKLLLKRRELAEALRDTAIHIVIAADRDERPAQAIKDMLQSLGYTPAESGGTTVIPPLGLPIHVIEQGGREDTATGQIEDDLLKLVELVHPDLTQAAARLEEAHGALDNKQKLLLYLALLNRRPGIRKLYKAVKRLLKNADETALRQALKNIVEQLDKLTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="36" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCD2</accession>
    <name>B1YCD2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0500</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349865.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCD2"/>
    <dbReference type="STRING" id="444157.Tneu_0500"/>
    <dbReference type="GeneID" id="6165901"/>
    <dbReference type="KEGG" id="tne:Tneu_0500"/>
    <dbReference type="eggNOG" id="arCOG07756">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2875236_0_0_2"/>
    <dbReference type="OrthoDB" id="381783at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="63" mass="7442" checksum="FE45D120CFFD0C86" modified="2008-05-20" version="1">MYIAVVLEHSAREALKSWLDISDRLRVCGINIPIFVDWTGQIDVTPEELGTHLERRWRKWAYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCD8</accession>
    <name>B1YCD8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP1 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0508</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349871.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCD8"/>
    <dbReference type="STRING" id="444157.Tneu_0508"/>
    <dbReference type="GeneID" id="6165926"/>
    <dbReference type="KEGG" id="tne:Tneu_0508"/>
    <dbReference type="eggNOG" id="arCOG03712">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_118419_0_0_2"/>
    <dbReference type="OrthoDB" id="37218at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010268">
        <property type="entry name" value="PaREP1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05942">
        <property type="entry name" value="PaREP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="177" mass="19920" checksum="31EDFF89405173DD" modified="2008-05-20" version="1">MERPLPRPTEEGYVAARLLEALVEAKLALDFLQRGLVRNAAGKAFQAWRAYMAALLRLELEKLKAAAKSEEERRWLVSRAVPGVPTGRMKGLSQMLEEVGHVGLSLWTDRALHLHDYQHHGPDPAGEYSKYSSREEAARDVVTLIRELVGLVDAIKTRAKWTEELEKALGEVKRQLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCG6</accession>
    <name>B1YCG6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">tRNA(Met) cytidine acetyltransferase TmcA</fullName>
            <ecNumber evidence="15">2.3.1.193</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="primary">tmcA</name>
        <name evidence="17" type="ordered locus">Tneu_0536</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">Catalyzes the formation of 41 N(4)-acetylcytidine (ac(4)C) sites in RNA, almost always on the middle C of a CCG motif. Modifications are found mostly in tRNA, with small amounts found in rRNA and mRNA.</text>
    </comment>
    <comment type="function">
        <text evidence="13 15">Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>a cytidine in RNA + acetyl-CoA + ATP + H2O = an N(4)-acetylcytidine in RNA + ADP + phosphate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:82211"/>
            <dbReference type="Rhea" id="RHEA-COMP:15704"/>
            <dbReference type="Rhea" id="RHEA-COMP:19834"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:74900"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>a cytidine in mRNA + acetyl-CoA + ATP + H2O = an N(4)-acetylcytidine in mRNA + ADP + phosphate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:58480"/>
            <dbReference type="Rhea" id="RHEA-COMP:15145"/>
            <dbReference type="Rhea" id="RHEA-COMP:15146"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:74900"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>a cytidine in tRNA + acetyl-CoA + ATP + H2O = an N(4)-acetylcytidine in tRNA + ADP + phosphate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:53876"/>
            <dbReference type="Rhea" id="RHEA-COMP:13670"/>
            <dbReference type="Rhea" id="RHEA-COMP:13671"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:74900"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12 15">
            <text>cytidine(34) in elongator tRNA(Met) + acetyl-CoA + ATP + H2O = N(4)-acetylcytidine(34) in elongator tRNA(Met) + ADP + phosphate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:43788"/>
            <dbReference type="Rhea" id="RHEA-COMP:10693"/>
            <dbReference type="Rhea" id="RHEA-COMP:10694"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:74900"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.3.1.193"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="15">Belongs to the TmcA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.193" evidence="15"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349899.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCG6"/>
    <dbReference type="STRING" id="444157.Tneu_0536"/>
    <dbReference type="GeneID" id="6165753"/>
    <dbReference type="KEGG" id="tne:Tneu_0536"/>
    <dbReference type="eggNOG" id="arCOG01951">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004652_1_0_2"/>
    <dbReference type="OrthoDB" id="312894at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990883">
        <property type="term" value="F:18S rRNA cytidine N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106162">
        <property type="term" value="F:mRNA N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051392">
        <property type="term" value="F:tRNA cytidine N4-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904812">
        <property type="term" value="P:rRNA acetylation involved in maturation of SSU-rRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051391">
        <property type="term" value="P:tRNA acetylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002101">
        <property type="term" value="P:tRNA wobble cytosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04301">
        <property type="entry name" value="NAT_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:002218">
        <property type="entry name" value="tRNA(Met) cytidine acetyltransferase TmcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.630.30:FF:000140">
        <property type="entry name" value="tRNA(Met) cytidine acetyltransferase TmcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11040">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01886">
        <property type="entry name" value="tRNA_acetyltr_TmcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007807">
        <property type="entry name" value="TcmA/NAT10_helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032672">
        <property type="entry name" value="TmcA/NAT10/Kre33"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013562">
        <property type="entry name" value="TmcA/NAT10_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024914">
        <property type="entry name" value="tRNA_acetyltr_TmcA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10925">
        <property type="entry name" value="N-ACETYLTRANSFERASE 10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10925:SF5">
        <property type="entry name" value="RNA CYTIDINE ACETYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13718">
        <property type="entry name" value="GNAT_acetyltr_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05127">
        <property type="entry name" value="NAT10_TcmA_helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08351">
        <property type="entry name" value="TmcA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="Acyl-CoA N-acyltransferases (Nat)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 15" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6 15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 15" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 15" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 15" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 15" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 15" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="2 15" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="16">
        <location>
            <begin position="447"/>
            <end position="627"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="406"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <begin position="552"/>
            <end position="554"/>
        </location>
        <ligand>
            <name>acetyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="599"/>
        </location>
        <ligand>
            <name>acetyl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00049883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00049889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00049914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00052598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00054687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00056795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ACB39479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="787" mass="88946" checksum="0DE3043BA39D1F73" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCG9</accession>
    <name>B1YCG9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_0539</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 6">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349902.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCG9"/>
    <dbReference type="STRING" id="444157.Tneu_0539"/>
    <dbReference type="GeneID" id="6165728"/>
    <dbReference type="KEGG" id="tne:Tneu_0539"/>
    <dbReference type="eggNOG" id="arCOG01707">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_0_2_2"/>
    <dbReference type="OrthoDB" id="275197at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.140.10:FF:000001">
        <property type="entry name" value="Acyl-CoA dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.110.10:FF:000002">
        <property type="entry name" value="Acyl-CoA dehydrogenase fadE12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.540.10:FF:000002">
        <property type="entry name" value="Acyl-CoA dehydrogenase FadE19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="entry name" value="Acyl-CoA dehydrogenase/oxidase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="entry name" value="Butyryl-CoA Dehydrogenase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.140.10">
        <property type="entry name" value="Butyryl-CoA Dehydrogenase, subunit A, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43884">
        <property type="entry name" value="ACYL-COA DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43884:SF12">
        <property type="entry name" value="ISOVALERYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016578">
        <property type="entry name" value="HsaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="Acyl-CoA dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="Acyl-CoA dehydrogenase NM domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0274">FAD</keyword>
    <keyword evidence="3 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA dehydrogenase/oxidase N-terminal" evidence="9">
        <location>
            <begin position="16"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA oxidase/dehydrogenase middle" evidence="8">
        <location>
            <begin position="131"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA dehydrogenase/oxidase C-terminal" evidence="7">
        <location>
            <begin position="242"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="405" mass="44927" checksum="833D1773D89A202C" modified="2008-05-20" version="1">MVFPFESLVDFSVVLTQEHELFRRAVREFVEREIAPRALEIDERDEAPLDLLRKMGEQGFFGLEIPEQYGGQGGDYRMAAILSEEVSRASPGLSVYFNSARLFSAPILLYGTEEQRRRYLPQIARGEKLAAFASTEPCCGSDVAGVRTRARRVGGRWVINGRKAFISSSDVAHYILVLARTSDPPDAGRRHVGLSMFVVERDAPGVKVEQCYSKLGLRGNHACEISLTDVEVPEESLVGREGMGFYYAMEAFNRSRIGIAAQAVGMAQAAFEKAFDYAHRREAFGVKIASFQAIQFSLVEMLAKIMTARLLTYMAAKLADEGRREFVFVASLAKYYATEAAEEVISDAVDVFGGAGVVRETGLERLYRDVKITQIYEGANNVQKLAAYRQLVRLLQERGTPPGGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCJ2</accession>
    <name>B1YCJ2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">CRISPR-associated protein, Crm2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0563</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349925.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCJ2"/>
    <dbReference type="STRING" id="444157.Tneu_0563"/>
    <dbReference type="GeneID" id="6165902"/>
    <dbReference type="KEGG" id="tne:Tneu_0563"/>
    <dbReference type="eggNOG" id="arCOG02666">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012640_0_0_2"/>
    <dbReference type="OrthoDB" id="148218at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2220">
        <property type="entry name" value="CRISPR-Cas system, Cmr2 subunit, D1 domain, cysteine cluster"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054767">
        <property type="entry name" value="Cas10-Cmr2_palm2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038242">
        <property type="entry name" value="Cmr2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024615">
        <property type="entry name" value="CRISPR-assoc_Cmr2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013407">
        <property type="entry name" value="CRISPR-assoc_prot_Cmr2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02577">
        <property type="entry name" value="cas_TM1794_Cmr2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22335">
        <property type="entry name" value="Cas10-Cmr2_palm2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12469">
        <property type="entry name" value="Cmr2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRISPR-associated protein Cmr2 N-terminal" evidence="3">
        <location>
            <begin position="157"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="Cas10/Cmr2 second palm" evidence="4">
        <location>
            <begin position="612"/>
            <end position="785"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF22335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="898" mass="99910" checksum="4AEBA567A7853498" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCJ6</accession>
    <name>B1YCJ6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">CRISPR-associated RAMP protein, Cmr6 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0567</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCJ6"/>
    <dbReference type="STRING" id="444157.Tneu_0567"/>
    <dbReference type="KEGG" id="tne:Tneu_0567"/>
    <dbReference type="eggNOG" id="arCOG02661">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053305_3_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010172">
        <property type="entry name" value="CRISPR-assoc_prot_TM1791"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005537">
        <property type="entry name" value="RAMP_III_fam"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01898">
        <property type="entry name" value="cas_TM1791_cmr6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39965">
        <property type="entry name" value="CRISPR SYSTEM CMR SUBUNIT CMR6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39965:SF1">
        <property type="entry name" value="CRISPR SYSTEM CMR SUBUNIT CMR6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03787">
        <property type="entry name" value="RAMPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRISPR type III-associated protein" evidence="2">
        <location>
            <begin position="113"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="262" mass="29668" checksum="24A11AB981EF0439" modified="2008-05-20" version="1">MKRPKKREEREVDYGKYFSSCAGDYNVVSCVNLAFLEASRDLARQNIRLRIPEFSRWAVLTLHQRPPQMWDQVKRYLELVYAAARGAFQNVFKFEFSLETPLTIHTRWPYLPLEIGIAWHPILNVPYIPASSLKGALRAAAPEPVCDFTKAELFGTAQEEGLLVVFDAYPTGGKAVRPDVVTPHYREVEGEIAETQASPVPLVFPTVPPGTKFQFMVGILPRDEKREVDYKKCEMELFDAVKKTLVRGLGAKTAVGYGVFKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCP1</accession>
    <name>B1YCP1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0615</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349974.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCP1"/>
    <dbReference type="STRING" id="444157.Tneu_0615"/>
    <dbReference type="GeneID" id="6165480"/>
    <dbReference type="KEGG" id="tne:Tneu_0615"/>
    <dbReference type="eggNOG" id="arCOG05510">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2191125_0_0_2"/>
    <dbReference type="OrthoDB" id="15542at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="108" mass="11640" checksum="FE64654CE0FEE789" modified="2008-05-20" version="1">MDKTLAALLAPLVLGYIGINFVGLPPALVAENLTLAAIYAAFAALMIRRPDRLTYTALALVAAFNAGRVSRTVWSPVEGFGRLAEEHIPLLLYLLLVAAFAFARSVKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCP6</accession>
    <name>B1YCP6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Signal-transduction protein with CBS domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0620</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349979.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCP6"/>
    <dbReference type="STRING" id="444157.Tneu_0620"/>
    <dbReference type="GeneID" id="6166219"/>
    <dbReference type="KEGG" id="tne:Tneu_0620"/>
    <dbReference type="eggNOG" id="arCOG00606">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040681_12_1_2"/>
    <dbReference type="OrthoDB" id="43333at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd09836">
        <property type="entry name" value="CBS_pair_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="entry name" value="CBS-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051257">
        <property type="entry name" value="Diverse_CBS-Domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080:SF2">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="CBS-domain pair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="7"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="71"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="144" mass="15826" checksum="571D7C88D90EECF4" modified="2008-05-20" version="1">MEVGALVRKNPIVLKHDGTILEAVQLMAKHNVGVVPIVDAEGRPLGVISERHVLRALAAGVPLDRPALEAARRELVTVTPDANVYDALLEMRRRGVRHVLVVDRDGRLIGVLSIRDFMREDVLAYIGFQAWQPPDVGGPEIMSL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCQ7</accession>
    <name>IF2P_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Probable translation initiation factor IF-2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">infB</name>
        <name type="ordered locus">Tneu_0631</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349990.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCQ7"/>
    <dbReference type="SMR" id="B1YCQ7"/>
    <dbReference type="STRING" id="444157.Tneu_0631"/>
    <dbReference type="GeneID" id="6166201"/>
    <dbReference type="KEGG" id="tne:Tneu_0631"/>
    <dbReference type="eggNOG" id="arCOG01560">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002656_3_3_2"/>
    <dbReference type="OrthoDB" id="30957at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03703">
        <property type="entry name" value="aeIF5B_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd16266">
        <property type="entry name" value="IF2_aeIF5B_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01887">
        <property type="entry name" value="IF2_eIF5B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000112">
        <property type="entry name" value="Eukaryotic translation initiation factor 5B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10050:FF:000001">
        <property type="entry name" value="Translation initiation factor IF-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10050">
        <property type="entry name" value="Translation initiation factor IF- 2, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00100_A">
        <property type="entry name" value="IF_2_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029459">
        <property type="entry name" value="EFTU-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004544">
        <property type="entry name" value="TF_aIF-2_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015760">
        <property type="entry name" value="TIF_IF2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023115">
        <property type="entry name" value="TIF_IF2_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036925">
        <property type="entry name" value="TIF_IF2_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00491">
        <property type="entry name" value="aIF-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003078">
        <property type="entry name" value="PRK04004.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43381:SF4">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 5B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43381">
        <property type="entry name" value="TRANSLATION INITIATION FACTOR IF-2-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14578">
        <property type="entry name" value="GTP_EFTU_D4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11987">
        <property type="entry name" value="IF-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52156">
        <property type="entry name" value="Initiation factor IF2/eIF5b, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0342">GTP-binding</keyword>
    <keyword id="KW-0396">Initiation factor</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000093836" description="Probable translation initiation factor IF-2">
        <location>
            <begin position="1"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="domain" description="tr-type G">
        <location>
            <begin position="3"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="region of interest" description="G1" evidence="1">
        <location>
            <begin position="12"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="region of interest" description="G2" evidence="1">
        <location>
            <begin position="37"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="G3" evidence="1">
        <location>
            <begin position="78"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="G4" evidence="1">
        <location>
            <begin position="132"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="region of interest" description="G5" evidence="1">
        <location>
            <begin position="200"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="12"/>
            <end position="19"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="78"/>
            <end position="82"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="132"/>
            <end position="135"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000250" key="1"/>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00100"/>
        </source>
    </evidence>
    <sequence length="589" mass="64748" checksum="2127D6637CD70301" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCS2</accession>
    <name>SYH_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Histidine--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Histidyl-tRNA synthetase</fullName>
            <shortName evidence="1">HisRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hisS</name>
        <name type="ordered locus">Tneu_0646</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>tRNA(His) + L-histidine + ATP = L-histidyl-tRNA(His) + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17313"/>
            <dbReference type="Rhea" id="RHEA-COMP:9665"/>
            <dbReference type="Rhea" id="RHEA-COMP:9689"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57595"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78527"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.21"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.21" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350005.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCS2"/>
    <dbReference type="SMR" id="B1YCS2"/>
    <dbReference type="STRING" id="444157.Tneu_0646"/>
    <dbReference type="GeneID" id="6165259"/>
    <dbReference type="KEGG" id="tne:Tneu_0646"/>
    <dbReference type="eggNOG" id="arCOG00404">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025113_3_0_2"/>
    <dbReference type="OrthoDB" id="8659at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004821">
        <property type="term" value="F:histidine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006427">
        <property type="term" value="P:histidyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:L-histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00773">
        <property type="entry name" value="HisRS-like_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="entry name" value="Anticodon-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00127">
        <property type="entry name" value="His_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00125">
        <property type="entry name" value="HisZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015807">
        <property type="entry name" value="His-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041715">
        <property type="entry name" value="HisRS-like_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004516">
        <property type="entry name" value="HisRS/HisZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004517">
        <property type="entry name" value="HisZ"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00442">
        <property type="entry name" value="hisS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43707:SF1">
        <property type="entry name" value="HISTIDINE--TRNA LIGASE, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43707">
        <property type="entry name" value="HISTIDYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13393">
        <property type="entry name" value="tRNA-synt_His"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001549">
        <property type="entry name" value="His-tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52954">
        <property type="entry name" value="Class II aaRS ABD-related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000095604" description="Histidine--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00127"/>
        </source>
    </evidence>
    <sequence length="417" mass="47754" checksum="C1EDD971A872CD92" modified="2008-05-20" version="1">MSGLPEHLRRPPRGMRDWLPPQLYALIEMEERLSKVAESFGYRRVETPVVEHFEVLAKKAGQEVVNEIYYFKDKAGRDVGLRFDMTVPVARVISYNLDLPRPVRWYYFTKVFRYDEPQHGRYREFHQFGIELVGSASPRADAEVIQVFIEALEAAGARDYVVKINDRRAVDKLLESLGVLQHRDVIYRALDKKYKLPREQVVDIMTNGGVPIDKAERIYDASEEMTLEEAVDAVLRLDAGLGSFYQKLVGYLATAVPVDRLRFDMSIVRGLDYYTGVVFEAYVGKYRLAVGGGGRYDDLLELYSGVKMPALGFAIGVERLMEAVGLERVEKPLDYYIYIFDDGAYPHAVALAKKLRAAGHSVAIELGEKNLKDAFEYILKVGTKYLIIMGRRELERGVVKIRDLQRREEFEKPLAEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCS4</accession>
    <name>B1YCS4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="18">Dolichol-phosphate mannosyltransferase</fullName>
            <ecNumber evidence="8">2.4.1.83</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="20">Dolichol-phosphate mannose synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="19">Dolichyl-phosphate beta-D-mannosyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="21">Mannose-P-dolichol synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="25" type="ordered locus">Tneu_0648</name>
    </gene>
    <organism evidence="25 26">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="25" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="25">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="17">Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="6">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Endomembrane system</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="4">Membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the glycosyltransferase 2 family.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.83" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350007.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCS4"/>
    <dbReference type="STRING" id="444157.Tneu_0648"/>
    <dbReference type="CAZy" id="GT2">
        <property type="family name" value="Glycosyltransferase Family 2"/>
    </dbReference>
    <dbReference type="GeneID" id="6165301"/>
    <dbReference type="KEGG" id="tne:Tneu_0648"/>
    <dbReference type="eggNOG" id="arCOG00894">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039727_0_0_2"/>
    <dbReference type="OrthoDB" id="11098at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004582">
        <property type="term" value="F:dolichyl-phosphate beta-D-mannosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006488">
        <property type="term" value="P:dolichol-linked oligosaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006506">
        <property type="term" value="P:GPI anchor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035269">
        <property type="term" value="P:protein O-linked glycosylation via mannose"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd06442">
        <property type="entry name" value="DPM1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.550.10:FF:000119">
        <property type="entry name" value="Dolichol-phosphate mannosyltransferase subunit 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039528">
        <property type="entry name" value="DPM1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007267">
        <property type="entry name" value="GtrA_DPMS_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43398">
        <property type="entry name" value="DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43398:SF1">
        <property type="entry name" value="DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04138">
        <property type="entry name" value="GtrA_DPMS_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="13" id="KW-0460">Magnesium</keyword>
    <keyword evidence="16" id="KW-0464">Manganese</keyword>
    <keyword evidence="15 22" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="26" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 25" id="KW-0808">Transferase</keyword>
    <keyword evidence="11 22" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="14 22" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="22">
        <location>
            <begin position="225"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="22">
        <location>
            <begin position="314"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="23">
        <location>
            <begin position="3"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="domain" description="GtrA/DPMS transmembrane" evidence="24">
        <location>
            <begin position="227"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00006739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00012704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00053724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00074878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00082336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="ARBA" id="ARBA00082614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="ARBA" id="ARBA00083744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="22">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="23">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="24">
        <source>
            <dbReference type="Pfam" id="PF04138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="25">
        <source>
            <dbReference type="EMBL" id="ACB39587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="26">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="340" mass="37153" checksum="6537562A9A10E519" modified="2008-05-20" version="1">MISVVVPTYNEAENIRELVERLHKALQNNYEVVVVDDGSPDGTAQIAASLAHSYPVVVITREGRLGLSSAVVEGARRAGGDVVVVMDADLQHPPELVPKLAEIAERGCLAVASRYVKGGGVRGWPLHRRVVSRGAVFLARLLLPEARAVHDPVSGFFAYSRECLAQIKPTGLYKILLDVLVQCRPRCVVEVPYVFGLRTRGRSKLGTRHVLDFLRQLFRLSRWRPLKFAAVGASGVFVAWAVLYALPLPPHLSVAAAIETSLTSNYILNRLWTFAGRKTPALTGWLRYHAATAVGNATNYITTLALHMLGAPLYVAYLAGVTLGFAANYALSEVVVFKYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="39" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCV2</accession>
    <name>B1YCV2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0676</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350035.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCV2"/>
    <dbReference type="STRING" id="444157.Tneu_0676"/>
    <dbReference type="GeneID" id="58787332"/>
    <dbReference type="KEGG" id="tne:Tneu_0676"/>
    <dbReference type="HOGENOM" id="CLU_3039204_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="54" mass="5779" checksum="719BFA713CAE52F1" modified="2008-05-20" version="1">MKTVEESLYNAVVSAVVTALLLALASLFPLGDLAAVLKAAFIDIEHMRTFISTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCW7</accession>
    <name>B1YCW7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0691</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCW7"/>
    <dbReference type="KEGG" id="tne:Tneu_0691"/>
    <dbReference type="eggNOG" id="arCOG05524">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2257467_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="117" mass="12711" checksum="3DACC482F07CA9D6" modified="2008-05-20" version="1">MRAALNLLLPTNFPKMHRALATVAVFKLIIALVIFIATVNLDAVLLVSCILMAVAAAIIRSVQEGEVALVLVSLILLIDAIGFFLSMASAAVLQIVAYTFLLAWDVQIIMLFRQLET</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCX3</accession>
    <name>B1YCX3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">TGS domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0697</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350056.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCX3"/>
    <dbReference type="STRING" id="444157.Tneu_0697"/>
    <dbReference type="GeneID" id="6165392"/>
    <dbReference type="KEGG" id="tne:Tneu_0697"/>
    <dbReference type="eggNOG" id="arCOG00358">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044997_0_1_2"/>
    <dbReference type="OrthoDB" id="372125at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.10.20.30:FF:000095">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.1070">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045001">
        <property type="entry name" value="DRG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031662">
        <property type="entry name" value="GTP-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43127">
        <property type="entry name" value="DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16897">
        <property type="entry name" value="MMR_HSR1_Xtn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02824">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="TGS-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TGS" evidence="3">
        <location>
            <begin position="311"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="39"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="387" mass="43381" checksum="57526CDAB7D040D7" modified="2008-05-20" version="1">MPANLPAEAKAAWLKVMEAKTPEEKIRAMEEFLSYVPKHKGTEKLIKHIRRRMAELKREVQERREKARSIRSGGARIYVAKEGDLQVAVVGPPSSGKTALLTCLTNTPMRPDDLPFSTVEPVPSMFIEDGVYVQLVKTPSIVLDQQSDLNTIALATVRNADAVLLTVGANASLEAVEKIFRFFEDEGVYLYPPKNYVRIERRGLGGVQIIGSGQIIGGTSNDVKRLLNEYGIYHAVVYIQGSVTLDDVEEALYLERQYKPTIAVVTMSDLYPAEELAGYFAKRGIVYHITDLRRCVIDRRRLLEDILKATGRIRVFTKPVHSKTYVEKPIIVKAGATVGEVAALIHSSLLQTFKYAVVWKRESFPQRPKRVGRDYALSDNDVVEIHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCX7</accession>
    <name>B1YCX7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PD-(D/E)XK endonuclease-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0701</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350060.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCX7"/>
    <dbReference type="STRING" id="444157.Tneu_0701"/>
    <dbReference type="GeneID" id="6165521"/>
    <dbReference type="KEGG" id="tne:Tneu_0701"/>
    <dbReference type="eggNOG" id="arCOG05527">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1387629_0_0_2"/>
    <dbReference type="OrthoDB" id="25072at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="195" mass="22431" checksum="1DF061506EC4AB53" modified="2008-05-20" version="1">MDFAKRLKVRLSDLIKLERPDALSSRYGKAFEKAVLALIKARDSVAAIRTFIENYGEPHSGAISKLMKLAPWTKKIVEAEPAPPVVFQIDGVTITAQADFIVKYADGRKELVELKSHILKRDEWKTKAEWSLATKIMRMLYRKAGYDYPLRLIYFVEREGAVTPEEEVFIYPKDEKDDETLLNVLKERVRKTVGK</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-02-10" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD10</accession>
    <name>ARGDC_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Arginine decarboxylase proenzyme</fullName>
            <shortName evidence="1">ADC</shortName>
            <shortName evidence="1">ArgDC</shortName>
            <ecNumber evidence="1">4.1.1.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Pyruvoyl-dependent arginine decarboxylase</fullName>
        </alternativeName>
        <component>
            <recommendedName>
                <fullName evidence="1">Arginine decarboxylase beta chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="1">Arginine decarboxylase alpha chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_0734</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Specifically catalyzes the decarboxylation of L-arginine to agmatine. Has no S-adenosylmethionine decarboxylase (AdoMetDC) activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-arginine + H(+) = agmatine + CO2</text>
            <dbReference type="Rhea" id="RHEA:17641"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:58145"/>
            <dbReference type="EC" id="4.1.1.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </cofactor>
        <text evidence="1">Binds 1 pyruvoyl group covalently per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amine and polyamine biosynthesis; agmatine biosynthesis; agmatine from L-arginine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterooctamer of four alpha and four beta chains arranged as a tetramer of alpha/beta heterodimers.</text>
    </comment>
    <comment type="PTM">
        <text evidence="1">Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The post-translation cleavage follows an unusual pathway, termed non-hydrolytic serinolysis, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl group blocking the N-terminus of the alpha chain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.</text>
    </comment>
    <comment type="sequence caution" evidence="2">
        <conflict type="erroneous initiation">
            <sequence resource="EMBL-CDS" id="ACB39673" version="1"/>
        </conflict>
    </comment>
    <dbReference type="EC" id="4.1.1.19" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39673.1"/>
        <property type="status" value="ALT_INIT"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_148682483.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD10"/>
    <dbReference type="SMR" id="B1YD10"/>
    <dbReference type="STRING" id="444157.Tneu_0734"/>
    <dbReference type="GeneID" id="6165201"/>
    <dbReference type="KEGG" id="tne:Tneu_0734"/>
    <dbReference type="eggNOG" id="arCOG00279">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_125470_2_1_2"/>
    <dbReference type="OrthoDB" id="114016at2157"/>
    <dbReference type="UniPathway" id="UPA00186">
        <property type="reaction ID" value="UER00284"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008792">
        <property type="term" value="F:arginine decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006527">
        <property type="term" value="P:L-arginine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006596">
        <property type="term" value="P:polyamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.60.90.10:FF:000005">
        <property type="entry name" value="Arginine decarboxylase proenzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.90.10">
        <property type="entry name" value="S-adenosylmethionine decarboxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00464">
        <property type="entry name" value="AdoMetDC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01298">
        <property type="entry name" value="ArgDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003826">
        <property type="entry name" value="AdoMetDC_fam_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027549">
        <property type="entry name" value="ArgDC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016067">
        <property type="entry name" value="S-AdoMet_deCO2ase_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017716">
        <property type="entry name" value="S-AdoMet_deCOase_pro-enz"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03330">
        <property type="entry name" value="SAM_DCase_Bsu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33866">
        <property type="entry name" value="S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33866:SF2">
        <property type="entry name" value="S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02675">
        <property type="entry name" value="AdoMet_dc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56276">
        <property type="entry name" value="S-adenosylmethionine decarboxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword id="KW-0210">Decarboxylase</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-0620">Polyamine biosynthesis</keyword>
    <keyword id="KW-0670">Pyruvate</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0704">Schiff base</keyword>
    <keyword id="KW-0865">Zymogen</keyword>
    <feature type="chain" id="PRO_0000364127" description="Arginine decarboxylase beta chain" evidence="1">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_0000364128" description="Arginine decarboxylase alpha chain" evidence="1">
        <location>
            <begin position="74"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate; via pyruvic acid" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for processing activity" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor; for catalytic activity" evidence="1">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage (non-hydrolytic); by autolysis" evidence="1">
        <location>
            <begin position="73"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="modified residue" description="Pyruvic acid (Ser); by autocatalysis" evidence="1">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="126" mass="14386" checksum="D0D16AF6B802F535" modified="2009-02-10" version="2" precursor="true">MQTTTQVKTPVVGKHVYGELYGVDEELLRDQEKLRKIVIEAAHIAKMHLVEVNSWKFKGGDKEGVSVIALVLESHIAIHTWPTYNYATVDVYTCGEHSDPMAAFRYIVSQLAPKRFTVNYSDRSYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD21</accession>
    <name>B1YD21_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0745</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350104.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD21"/>
    <dbReference type="STRING" id="444157.Tneu_0745"/>
    <dbReference type="GeneID" id="6165179"/>
    <dbReference type="KEGG" id="tne:Tneu_0745"/>
    <dbReference type="eggNOG" id="arCOG00784">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2581552_0_0_2"/>
    <dbReference type="OrthoDB" id="25166at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030677">
        <property type="term" value="C:ribonuclease P complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.210">
        <property type="entry name" value="Ribonuclease P/MRP, subunit p29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036980">
        <property type="entry name" value="RNase_P/MRP_Rpp29_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023534">
        <property type="entry name" value="Rof/RNase_P-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101744">
        <property type="entry name" value="Rof/RNase P subunit-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="79" mass="9014" checksum="AFFA63203BEB9A11" modified="2008-05-20" version="1">MHSCIDLLGREVSTYGCPYRARGVVVGETYNTFLILVGNRVVAVPKRLCRFYVYDLGLLVRGTYLVGYRDRRLFNCGAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD29</accession>
    <name>B1YD29_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 10">A-type ATP synthase subunit I</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_0753</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Component of the A-type ATP synthase that produces ATP from ADP in the presence of a proton gradient across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the V-ATPase 116 kDa subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350112.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD29"/>
    <dbReference type="STRING" id="444157.Tneu_0753"/>
    <dbReference type="GeneID" id="6165089"/>
    <dbReference type="KEGG" id="tne:Tneu_0753"/>
    <dbReference type="eggNOG" id="arCOG04138">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020397_0_0_2"/>
    <dbReference type="OrthoDB" id="85892at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033179">
        <property type="term" value="C:proton-transporting V-type ATPase, V0 domain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016471">
        <property type="term" value="C:vacuolar proton-transporting V-type ATPase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051117">
        <property type="term" value="F:ATPase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007035">
        <property type="term" value="P:vacuolar acidification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002490">
        <property type="entry name" value="V-ATPase_116kDa_su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11629:SF63">
        <property type="entry name" value="V-TYPE PROTON ATPASE SUBUNIT A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11629">
        <property type="entry name" value="VACUOLAR PROTON ATPASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01496">
        <property type="entry name" value="V_ATPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="368"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="402"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="441"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="474"/>
            <end position="495"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="507"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="550"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="589"/>
            <end position="612"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00059506"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00068671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU361189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="645" mass="71524" checksum="2B6052FFB7194A09" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD46</accession>
    <name>B1YD46_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0770</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350129.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD46"/>
    <dbReference type="STRING" id="444157.Tneu_0770"/>
    <dbReference type="CAZy" id="GT2">
        <property type="family name" value="Glycosyltransferase Family 2"/>
    </dbReference>
    <dbReference type="GeneID" id="6164440"/>
    <dbReference type="KEGG" id="tne:Tneu_0770"/>
    <dbReference type="eggNOG" id="arCOG01391">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041759_0_0_2"/>
    <dbReference type="OrthoDB" id="43988at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06423">
        <property type="entry name" value="CESA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050321">
        <property type="entry name" value="Glycosyltr_2/OpgH_subfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43867">
        <property type="entry name" value="CELLULOSE SYNTHASE CATALYTIC SUBUNIT A [UDP-FORMING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43867:SF2">
        <property type="entry name" value="CELLULOSE SYNTHASE CATALYTIC SUBUNIT A [UDP-FORMING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13632">
        <property type="entry name" value="Glyco_trans_2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="340"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="368"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="407"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="472"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="8">
        <location>
            <begin position="170"/>
            <end position="354"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="499" mass="54760" checksum="BC321E16774D4562" modified="2008-05-20" version="1">MVNITFLNVSIPKNVINETLQVLNRTREGPVTISNAPEVPMWLQHALLAIYFALLALAILLMMHYIYYARHARPASGDPPDPPSDVPLSIIIPVKNEATETVVNAVRRLAQLRCPNAEVVVVSDDPPEKAAELEKALAGLPARVLRRPNPTGYKGAALNWAVEHARGEILLFLDVDSVPPPDLCARARAVGEREIAFLGWDGYAAVKTPIAALQLFLYKYLLYYVAILGRYNTGHPVFALGSGIAVRKRFLREVGGFCNCTADDYDISMKAYLSGGRVVYLPGPPVYVEVPAGYGAFKRQYARWTYNSAYLLAQYARQILKLKMPLAHRLSVFLNVATHPLMILTTFATMVATVAMSYMGILLPPFHILAMQGGLLALALAQTFYVYKLAKPDGHGFAEVASMLAKSAALLLALSPYLTFYVLLGLLRRRIRWYVTPKGLAVLKSGALGPYEVATTSALAALLALSFYTANWLFITNAATLLLVFLYVYLRVAAAAKPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDA8</accession>
    <name>B1YDA8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HEPN domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0834</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350191.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDA8"/>
    <dbReference type="STRING" id="444157.Tneu_0834"/>
    <dbReference type="GeneID" id="6164558"/>
    <dbReference type="KEGG" id="tne:Tneu_0834"/>
    <dbReference type="eggNOG" id="arCOG01194">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2079505_0_0_2"/>
    <dbReference type="OrthoDB" id="27580at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81593">
        <property type="entry name" value="Nucleotidyltransferase substrate binding subunit/domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="115" mass="12541" checksum="507A7FF7EF8C694F" modified="2008-05-20" version="1">MERILGIHLEWYRRHISHMALALEALEDGDSQAACYHSYQAVSTLLSGVLGLDPYSPGPVVKTIGSMLKSAVEILPPGAESCASALERQYYGGQEGEICVRCAELLTDLIHQVIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDF9</accession>
    <name>B1YDF9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Peptidase M48 Ste24p</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Tneu_0885</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="10">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the peptidase M48 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350242.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDF9"/>
    <dbReference type="STRING" id="444157.Tneu_0885"/>
    <dbReference type="GeneID" id="6164285"/>
    <dbReference type="KEGG" id="tne:Tneu_0885"/>
    <dbReference type="eggNOG" id="arCOG01333">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_942049_0_0_2"/>
    <dbReference type="OrthoDB" id="28389at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2010.10">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050083">
        <property type="entry name" value="HtpX_protease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43221">
        <property type="entry name" value="PROTEASE HTPX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43221:SF2">
        <property type="entry name" value="PROTEASE HTPX HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 10" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2 10" id="KW-0645">Protease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6 10" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="63"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="188"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="213"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase M48" evidence="12">
        <location>
            <begin position="133"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB39822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="295" mass="32906" checksum="E7B762B84F73EA04" modified="2008-05-20" version="1">MGLDLLDFLRRRYRGDAYKAALVGTYVGGRYVDPPPLQANAYLLMVPLALSLVPLLLSKNAALQWAAGVAIIVGAYLALYLYLRRSCFIPDEVRVVRTNYGDVDYLRRNKLAILEDPSALPGDYEVYHAPAGVCVARDRRANAFTLDGPGGPVIFFTTGLYARLEPEELQAVLEHERGHIRYRHTHKLLAFLIAEYTLRVPLVHLVYTKYTVALLAAHMVGAALLFTALLHAFEFEADRYAAAKHRERLASALVKLDWNGIVDSVANPIAARLSLLARSHPLTIDRLKRLNALPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDG4</accession>
    <name>B1YDG4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Nucleotidyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0890</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350247.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDG4"/>
    <dbReference type="STRING" id="444157.Tneu_0890"/>
    <dbReference type="GeneID" id="6164345"/>
    <dbReference type="KEGG" id="tne:Tneu_0890"/>
    <dbReference type="eggNOG" id="arCOG00666">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029499_0_2_2"/>
    <dbReference type="OrthoDB" id="15372at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04181">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.10.10">
        <property type="entry name" value="Hexapeptide repeat proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056729">
        <property type="entry name" value="GMPPB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050486">
        <property type="entry name" value="Mannose-1P_guanyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22572">
        <property type="entry name" value="SUGAR-1-PHOSPHATE GUANYL TRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF25087">
        <property type="entry name" value="GMPPB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="Trimeric LpxA-like enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Nucleotidyl transferase" evidence="3">
        <location>
            <begin position="5"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="Mannose-1-phosphate guanyltransferase C-terminal" evidence="4">
        <location>
            <begin position="249"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF25087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="359" mass="38903" checksum="FA9E7513D014493D" modified="2008-05-20" version="1">MAECGIILAGGFATRLRPLSYTKPKPLFPILGKPVLDWVIEKVAEVAEPVVSARYLSYVIRSHINARWGQRVRVVEEDRPLGDGGAVINAVRSLGVRGPIVVANGDVFTDLSVKRLWEFHRRAGAAVTIALIEVPQEEVGRFGIAVLDEGGRIRRFVEKPREPVGSNLANAGFYIFEPEAVREFPELNSGEVKIAKHIIPRLMEKFDIYGYVHRGLWFDIGTHADYLKANFAALDRCDVCSPEVPGAKIIPPVYIGEGATVGAGSVLGPYAVVGAGAKLGPHVRVRESVLMDGVVAEAGAYIHRSIVGEGAVLGRWTRLVEAVVADGVYVKDEVYVGRGAAVGPNREVEQDVKDGEILP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDH5</accession>
    <name>B1YDH5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Nascent polypeptide-associated complex protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">nac</name>
        <name evidence="7" type="ordered locus">Tneu_0901</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Contacts the emerging nascent chain on the ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Interacts with the ribosome. Binds ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the NAC-alpha family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350258.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDH5"/>
    <dbReference type="STRING" id="444157.Tneu_0901"/>
    <dbReference type="GeneID" id="6164577"/>
    <dbReference type="KEGG" id="tne:Tneu_0901"/>
    <dbReference type="eggNOG" id="arCOG04061">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_146475_0_0_2"/>
    <dbReference type="OrthoDB" id="53273at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd14359">
        <property type="entry name" value="UBA_AeNAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.10">
        <property type="entry name" value="DNA helicase RuvA subunit, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.70.30">
        <property type="entry name" value="Nascent polypeptide-associated complex domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00814">
        <property type="entry name" value="NAC_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044034">
        <property type="entry name" value="NAC-like_UBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038187">
        <property type="entry name" value="NAC_A/B_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005231">
        <property type="entry name" value="NAC_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002715">
        <property type="entry name" value="Nas_poly-pep-assoc_cplx_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009060">
        <property type="entry name" value="UBA-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00264">
        <property type="entry name" value="archaeal-type nascent polypeptide-associated complex protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01849">
        <property type="entry name" value="NAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19026">
        <property type="entry name" value="UBA_HYPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01407">
        <property type="entry name" value="NAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46934">
        <property type="entry name" value="UBA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51151">
        <property type="entry name" value="NAC_AB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0653">Protein transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 4" id="KW-0813">Transport</keyword>
    <feature type="domain" description="NAC-A/B" evidence="6">
        <location>
            <begin position="3"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="NCBIfam" id="TIGR00264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="127" mass="14171" checksum="34A3C028AFE98283" modified="2008-05-20" version="1">MIPTNPRELEKLLKRMGIKVEEVDVAYVELRLKNGEVVRINNPTVALMKMPNKVLLYQIQTSEAAVERVQQQQQQPQQGGYQPSEDDIALVMEQTGATREEAVNALVEAKGDLVQAAMKILSKKRGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDJ6</accession>
    <name>B1YDJ6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0922</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350279.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDJ6"/>
    <dbReference type="STRING" id="444157.Tneu_0922"/>
    <dbReference type="GeneID" id="6164603"/>
    <dbReference type="KEGG" id="tne:Tneu_0922"/>
    <dbReference type="eggNOG" id="arCOG07065">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_184186_0_0_2"/>
    <dbReference type="OrthoDB" id="28148at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="93" mass="10808" checksum="9483D8663CEB5B09" modified="2008-05-20" version="1">MEHRVVFIFRKCPPSHLLKLRWWGYDVASLEACPDVETVSDLGRYIRGRFVIVVGDRELAEELGVAYAAVEEVERFLAWLSRELPPAFKPYLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDN4</accession>
    <name>B1YDN4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">siroheme decarboxylase</fullName>
            <ecNumber evidence="4">4.1.1.111</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0962</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>siroheme + 2 H(+) = 12,18-didecarboxysiroheme + 2 CO2</text>
            <dbReference type="Rhea" id="RHEA:19093"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:60052"/>
            <dbReference type="ChEBI" id="CHEBI:140497"/>
            <dbReference type="EC" id="4.1.1.111"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Porphyrin-containing compound metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Ahb/Nir family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.111" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350317.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDN4"/>
    <dbReference type="STRING" id="444157.Tneu_0962"/>
    <dbReference type="GeneID" id="6164582"/>
    <dbReference type="KEGG" id="tne:Tneu_0962"/>
    <dbReference type="eggNOG" id="arCOG01628">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049427_1_0_2"/>
    <dbReference type="OrthoDB" id="145939at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3460">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040523">
        <property type="entry name" value="AsnC_trans_reg2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050684">
        <property type="entry name" value="HTH-Siroheme_Decarb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053953">
        <property type="entry name" value="NirdL-like_HTH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43413:SF1">
        <property type="entry name" value="SIROHEME DECARBOXYLASE NIRL SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43413">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR, ASNC FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17805">
        <property type="entry name" value="AsnC_trans_reg2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22451">
        <property type="entry name" value="NirdL-like_HTH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Siroheme decarboxylase NirL-like HTH" evidence="7">
        <location>
            <begin position="8"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="domain" description="Siroheme decarboxylase AsnC-like ligand binding" evidence="6">
        <location>
            <begin position="63"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="Siroheme decarboxylase NirL-like HTH" evidence="7">
        <location>
            <begin position="182"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="domain" description="Siroheme decarboxylase AsnC-like ligand binding" evidence="6">
        <location>
            <begin position="229"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00048470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF17805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF22451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="322" mass="36084" checksum="4716FF5D416EB023" modified="2008-05-20" version="1">MDSRLVDVLMEVQYDFPLVERPFAVVGERVGLGEGEVVEVLRGAVRAGVLKRIGAILNYRARGMEAALVGMAVPEDVVEVVAAEVNRDPYVSHNFQRDFKPYNLWFVTKARSREELEGKVAAVAGKFGLDYVILYSLRSYKVDVRFDLRRGVSWTKGEVMPESPPSVESLGVPQAFFSRVKSLPLVPEPFREAAEALGTSVGEALAKIRELIKLGVLRDLHGTLDGEAVGFRENAMVVVREPVCEAAARLNITTHVVLRNTVPGKWRYPCYFMVHGVSRQVLEDYIRDAVRRLGVSEYRVLYSVRDFLGGREMGRRVERVAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDZ6</accession>
    <name>B1YDZ6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1078</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350428.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDZ6"/>
    <dbReference type="STRING" id="444157.Tneu_1078"/>
    <dbReference type="GeneID" id="6165837"/>
    <dbReference type="KEGG" id="tne:Tneu_1078"/>
    <dbReference type="eggNOG" id="arCOG00194">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="87732at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050763">
        <property type="entry name" value="ABC_transporter_ATP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42711">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42711:SF5">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN NATA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="2"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="286" mass="30816" checksum="A513A399448EA0C7" modified="2008-05-20" version="1">MIACRGVGRRFGGFWALRGVTFEVGRGAAVAVLGPNGAGKTTLVRILTTELAPTEGAAEVAGLDVVKDAERLRRVIAAVPQEARPIDFLTPYEFVLSYLLLRGLPLREARRRTAEALRQFGLWEARGRELDALSGGMKRRTLVAAVFASEAEVVFLDEPTTGLDAYSRRVVWNAVAELKRRGATVVLTTHYAEEAAALADWVLVLKGGRAVDFAPPAKLVEKVPGRYVVEVYGGAELEGRAVAEVGGRRLYYVDAPAYVEGAVVRPKSLEDYILLNVGAAGGHEGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE55</accession>
    <name>B1YE55_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CRISPR locus-related DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1138</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350487.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE55"/>
    <dbReference type="STRING" id="444157.Tneu_1138"/>
    <dbReference type="GeneID" id="6165746"/>
    <dbReference type="KEGG" id="tne:Tneu_1138"/>
    <dbReference type="eggNOG" id="arCOG01451">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1292074_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010163">
        <property type="entry name" value="Csa3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01884">
        <property type="entry name" value="cas_HTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="223" mass="24443" checksum="C5FC1A863BEDEB5B" modified="2008-05-20" version="1">MVKTFFVYKVYISGCRWLAMRMGITVGFEHRFAVRALAKLGPADEYIFLYAYTGRGEDSRSESTVRELIAAFGRGTGFRVDLTKPGEALEQIYGLGLERVVLAGGPRLLVLLALLASLLRRSEVYVLPEYSAEPLDLTPLTAFCDLCRLSPAKLGVVASVSGRVGIDDVAQLVGRDSTTVARYLKDLSEAGVVKSLGGRRREYFVDPLLTTVARLMQNRAGSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8M1</accession>
    <name>B1Y8M1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0248 protein Tneu_1171</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1171</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0248 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8M1"/>
    <dbReference type="STRING" id="444157.Tneu_1171"/>
    <dbReference type="KEGG" id="tne:Tneu_1171"/>
    <dbReference type="eggNOG" id="arCOG01302">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_172276_3_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01245">
        <property type="entry name" value="UPF0248"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007547">
        <property type="entry name" value="UPF0248"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="88" mass="9790" checksum="B7844B4B1AD37A33" modified="2008-05-20" version="1">MGNPMRQIFNRVKWSGRRAYFWFISRGSPGGEEVLSTDDVVEVGANGVVVSVGGRERYIPYHRIVEIRLESGEVLLSRRGGREPSGGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8N2</accession>
    <name>B1Y8N2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1182</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350530.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8N2"/>
    <dbReference type="STRING" id="444157.Tneu_1182"/>
    <dbReference type="GeneID" id="6165255"/>
    <dbReference type="KEGG" id="tne:Tneu_1182"/>
    <dbReference type="eggNOG" id="arCOG02050">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045498_5_2_2"/>
    <dbReference type="OrthoDB" id="57092at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051598">
        <property type="entry name" value="TSUP/Inactive_protease-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43701">
        <property type="entry name" value="MEMBRANE TRANSPORTER PROTEIN MJ0441-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43701:SF2">
        <property type="entry name" value="MEMBRANE TRANSPORTER PROTEIN YJNA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="79"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="106"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="165"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="229"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="261"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="283" mass="30034" checksum="7147D62B85BF1206" modified="2008-05-20" version="1">MNAALLFAALFTTSVFAGFVGALTGLGGGVVLVPIYVLALGVPVEYAAGASLVSTIATSLATSAAYVRDRLTNVRIGMSLEISTTLGALAGSLTAAWIYASGLQRVVYLVFGAVLIFSSYMQWAVAKLGERPRPPPDRWTSFLKLRGRYYDVVRRETVEYYGVRWWLGALIMFGAGLVSGFLGIGGGALKVLAMDWAMALPIKVSTATSNFMIGVTAATGTAVYWVHGYIQPFLAAATALGVLAGAYVGSKVLPRLRGRSVRLFFAAVVLLLGVQMMLRGIWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8N6</accession>
    <name>B1Y8N6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF401 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1186</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350534.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8N6"/>
    <dbReference type="STRING" id="444157.Tneu_1186"/>
    <dbReference type="GeneID" id="6165188"/>
    <dbReference type="KEGG" id="tne:Tneu_1186"/>
    <dbReference type="eggNOG" id="arCOG04354">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056143_0_0_2"/>
    <dbReference type="OrthoDB" id="19102at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007294">
        <property type="entry name" value="DUF401"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39556">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39556:SF1">
        <property type="entry name" value="PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04165">
        <property type="entry name" value="DUF401"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="167"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="199"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="247"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="277"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="319"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="355"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="378" mass="39697" checksum="374366EAD78C4CFB" modified="2008-05-20" version="1">MLLAFLLSVLIIIAGTLSRKLDVSASLAAGALLYGAAALGPRMPAATAAAFNESMAYVISSLVFAMALGYLLKERGERLASGLSALGPRAAAFLIPASIGLLPMPGGAYVSAVVAEPLYERMGLGRNERTFLNYWMRHIWISVWPLFQGVLITSAVLGVPVWQVVEWAWPAAAFAALAGVAVGAPIVKRAAASGRARDLAALWPLAAVAVLSFTAPLPLAVALVYLAYVALYRVPRRQVAASFRYALSPRILAILVFSLVFSQYIKESGLSRQLLEILAGYAGLAVFLIPFAIGLATGVEFAFAGLAFPPISPLIHGPALALAFAGGFVGVMLSPAHSCLVLTCEHYRCEAGGTYRLLAKAAAVVAALSALYYALAIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8N8</accession>
    <name>B1Y8N8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1188</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350536.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8N8"/>
    <dbReference type="STRING" id="444157.Tneu_1188"/>
    <dbReference type="GeneID" id="6165429"/>
    <dbReference type="KEGG" id="tne:Tneu_1188"/>
    <dbReference type="eggNOG" id="arCOG00291">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_153636_0_0_2"/>
    <dbReference type="OrthoDB" id="23833at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050572">
        <property type="entry name" value="Fe-S_Ferredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43687">
        <property type="entry name" value="ADENYLYLSULFATE REDUCTASE, BETA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43687:SF1">
        <property type="entry name" value="FERREDOXIN III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14697">
        <property type="entry name" value="Fer4_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="8"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="38"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="108" mass="11985" checksum="FD82E0ED29F37423" modified="2008-05-20" version="1">MAELAKYERVVIDQDTCISCGACVATCPYQALELDDNGKSRLIWDKCRDDYSCVAVCPVKAISKTSEATPEAKSKKGWYRFGRPLSPDEQKAYEEWKAKFGITAPPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8R0</accession>
    <name>B1Y8R0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1212</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350558.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8R0"/>
    <dbReference type="STRING" id="444157.Tneu_1212"/>
    <dbReference type="GeneID" id="6166233"/>
    <dbReference type="KEGG" id="tne:Tneu_1212"/>
    <dbReference type="eggNOG" id="arCOG05617">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1567219_0_0_2"/>
    <dbReference type="OrthoDB" id="29178at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="166" mass="17933" checksum="D64880EF9D5E7372" modified="2008-05-20" version="1">MLTARYLLALVAAVVATALVATSTINAVASADFSLRALASSIASGKPAKAETPLSIRAYTVYYVYRGGRWIVEGGGPGLPLYAVAIGQCPPIWEMLNKTFTARNNTVYLTRCSIIFPTAEARGNTTVFTHVVPMCDVGTDFRPETAEESYIYANMTVKIRAVLVWC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Z2</accession>
    <name>B1Y8Z2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Bis(5'nucleosyl)-tetraphosphatase, ApaH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1294</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350640.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Z2"/>
    <dbReference type="STRING" id="444157.Tneu_1294"/>
    <dbReference type="GeneID" id="6165649"/>
    <dbReference type="KEGG" id="tne:Tneu_1294"/>
    <dbReference type="eggNOG" id="arCOG01143">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004962_0_10_2"/>
    <dbReference type="OrthoDB" id="303721at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00144">
        <property type="entry name" value="MPP_PPP_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050341">
        <property type="entry name" value="PP1_catalytic_subunit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006186">
        <property type="entry name" value="Ser/Thr-sp_prot-phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11668">
        <property type="entry name" value="SERINE/THREONINE PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11668:SF496">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00114">
        <property type="entry name" value="STPHPHTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00156">
        <property type="entry name" value="PP2Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00125">
        <property type="entry name" value="SER_THR_PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Serine/threonine specific protein phosphatases" evidence="1">
        <location>
            <begin position="85"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS00125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="279" mass="30218" checksum="30C586B14B8A49EF" modified="2008-05-20" version="1">MASVEALVDLLAKAREKTRSLVVEAEGRFTAVGDIHGDYRTLGQILEEWESPYLFLGDYVDRGDMGLEVVAEVLKLYVEGKAVVLRGNHESPVMNIEGGFLDELCEKIGSRCGAVYKEFEKTFASLPVAAVVNGKIVALHGGIPLKEDMTPASLEDLRRAGGDLVTPADPLVFQALWNDPCPCDTYAPSPRGPGAWLFGRKITKEFHAANDTAVLLRGHTYVPAGCAVHHGGAVVTVFTSAVGPYRKTKPKVAAVRQNVEVYDLSTKEPARCPEDPDLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Z5</accession>
    <name>B1Y8Z5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1297</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Z5"/>
    <dbReference type="STRING" id="444157.Tneu_1297"/>
    <dbReference type="KEGG" id="tne:Tneu_1297"/>
    <dbReference type="eggNOG" id="arCOG00923">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015424">
        <property type="term" value="F:ABC-type amino acid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030679">
        <property type="entry name" value="ABC_ATPase_HisP-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050086">
        <property type="entry name" value="MetN_ABC_transporter-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43166">
        <property type="entry name" value="AMINO ACID IMPORT ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43166:SF9">
        <property type="entry name" value="GLUTAMATE_ASPARTATE IMPORT ATP-BINDING PROTEIN GLTL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039085">
        <property type="entry name" value="ABC_ATPase_HisP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="10"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="249" mass="27821" checksum="B1B02A858234B78A" modified="2008-05-20" version="1">MVVWAVATIVSVENLYVAYGSQDVVKGVSLRVSQGEKIVIMGPSGSGKSTFLRSLIWLVKPREGRVVIDGLEVGPGTLREVRMRVGFVFQHYNLFPHLKVIQNIALPLVKIHNVPPQEALVRAREALRLVGLEDKADAYPLQLSGGQQQRVAIARALAKNPRVLMLDEPTSALDPELVEEVLQVLEDIARRGTTMLIVTHEVDFALDVADRVVFFEGGKIVEEGPVDILYNPKTERFRQFLKRLHKRMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="95" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y910</accession>
    <name>B1Y910_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">tRNA sulfurtransferase</fullName>
            <ecNumber evidence="11">2.8.1.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Sulfur carrier protein ThiS sulfurtransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Thiamine biosynthesis protein ThiI</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">tRNA 4-thiouridine synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">thiI</name>
        <name evidence="15" type="ordered locus">Tneu_1312</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>[ThiI sulfur-carrier protein]-S-sulfanyl-L-cysteine + a uridine in tRNA + 2 reduced [2Fe-2S]-[ferredoxin] + ATP + H(+) = [ThiI sulfur-carrier protein]-L-cysteine + a 4-thiouridine in tRNA + 2 oxidized [2Fe-2S]-[ferredoxin] + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:24176"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:13337"/>
            <dbReference type="Rhea" id="RHEA-COMP:13338"/>
            <dbReference type="Rhea" id="RHEA-COMP:13339"/>
            <dbReference type="Rhea" id="RHEA-COMP:13340"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:61963"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:136798"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.8.1.4"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>[ThiS sulfur-carrier protein]-C-terminal Gly-Gly-AMP + S-sulfanyl-L-cysteinyl-[cysteine desulfurase] + AH2 = [ThiS sulfur-carrier protein]-C-terminal-Gly-aminoethanethioate + L-cysteinyl-[cysteine desulfurase] + A + AMP + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:43340"/>
            <dbReference type="Rhea" id="RHEA-COMP:12157"/>
            <dbReference type="Rhea" id="RHEA-COMP:12158"/>
            <dbReference type="Rhea" id="RHEA-COMP:12910"/>
            <dbReference type="Rhea" id="RHEA-COMP:19908"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:61963"/>
            <dbReference type="ChEBI" id="CHEBI:90618"/>
            <dbReference type="ChEBI" id="CHEBI:232372"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="11">Cofactor biosynthesis; thiamine diphosphate biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the ThiI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.4" evidence="11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350658.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y910"/>
    <dbReference type="STRING" id="444157.Tneu_1312"/>
    <dbReference type="GeneID" id="6166297"/>
    <dbReference type="KEGG" id="tne:Tneu_1312"/>
    <dbReference type="eggNOG" id="arCOG00038">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="eggNOG" id="arCOG02021">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037952_4_1_2"/>
    <dbReference type="OrthoDB" id="372227at2157"/>
    <dbReference type="UniPathway" id="UPA00060"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004810">
        <property type="term" value="F:CCA tRNA nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140741">
        <property type="term" value="F:tRNA-uracil-4 sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052837">
        <property type="term" value="P:thiazole biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002937">
        <property type="term" value="P:tRNA 4-thiouridine biosynthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00158">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd11716">
        <property type="entry name" value="THUMP_ThiI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2130.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="entry name" value="Rhodanese-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00021">
        <property type="entry name" value="ThiI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020536">
        <property type="entry name" value="ThiI_AANH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054173">
        <property type="entry name" value="ThiI_fer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049961">
        <property type="entry name" value="ThiI_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004114">
        <property type="entry name" value="THUMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049962">
        <property type="entry name" value="THUMP_ThiI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003720">
        <property type="entry name" value="tRNA_STrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050102">
        <property type="entry name" value="tRNA_sulfurtransferase_ThiI"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00342">
        <property type="entry name" value="tRNA uracil 4-sulfurtransferase ThiI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43209">
        <property type="entry name" value="TRNA SULFURTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43209:SF1">
        <property type="entry name" value="TRNA SULFURTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02568">
        <property type="entry name" value="ThiI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22025">
        <property type="entry name" value="ThiI_fer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02926">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00981">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="Rhodanese/Cell cycle control phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143437">
        <property type="entry name" value="THUMP domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51165">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11 12" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="8 11" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="4 11" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 11" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="THUMP" evidence="14">
        <location>
            <begin position="57"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="13">
        <location>
            <begin position="397"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine persulfide intermediate" evidence="11">
        <location>
            <position position="445"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="177"/>
            <end position="178"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="289"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB40239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="475" mass="51906" checksum="52BDA6A63A832EA4" modified="2008-05-20" version="1">MERVLLVRVGELTVKRGWTRVEMERLLLRAAKEAAGECGGARFAREPGRIYAYGDVNCLKKALSRVFGVKSVSPAYVLQFKDLAEVAAAAAELWGGEVAGRRFAVRVHRVGTHGFTSRDVAAAVGAALVKAGGSVDLETPEVELYVEVRGDRAFLYREVLEGPGGLPLGSEGKVLALVSGGIDSPVAAWMLMRRGAHVDVFYCHLGGTYALRLVVEVIKRLLSWSYGYNARVAVADCSPVVRALRRGVREELWNIAFKRALYLAASKVAEAVKAAALVTGESLGQVSSQTLQALAAAERGLDMPIFRPLVGMDKDEIVHLAERIGTYEVSARLPEYCALLSRRPRKWATRQEVEEIDLAIHDAVAEVVNGVKVIRKSELESFASSLKPPHDLELETPPPDSVLVDLRSAEDYRRWHLPGALRADPDDVLTLVDRLGRDKTYVFYCYGGGTSLDVAESLRRLGIKAYSLKLKPQGG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y945</accession>
    <name>Y1348_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0173 metal-dependent hydrolase Tneu_1348</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_1348</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0173 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350693.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y945"/>
    <dbReference type="SMR" id="B1Y945"/>
    <dbReference type="STRING" id="444157.Tneu_1348"/>
    <dbReference type="GeneID" id="6165193"/>
    <dbReference type="KEGG" id="tne:Tneu_1348"/>
    <dbReference type="eggNOG" id="arCOG00497">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070010_4_0_2"/>
    <dbReference type="OrthoDB" id="28313at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00457">
        <property type="entry name" value="UPF0173"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022877">
        <property type="entry name" value="UPF0173"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050114">
        <property type="entry name" value="UPF0173_UPF0282_UlaG_hydrolase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001911">
        <property type="entry name" value="PRK00685.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43546:SF3">
        <property type="entry name" value="UPF0173 METAL-DEPENDENT HYDROLASE MJ1163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43546">
        <property type="entry name" value="UPF0173 METAL-DEPENDENT HYDROLASE MJ1163-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000367242" description="UPF0173 metal-dependent hydrolase Tneu_1348">
        <location>
            <begin position="1"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00457"/>
        </source>
    </evidence>
    <sequence length="225" mass="24703" checksum="CA8E4747AEAE8FDD" modified="2008-05-20" version="1">MQIRWFGHSAFMVEVQGLKLLIDPWISNPLSPTSPQEVANMRPTHILITHDHFDHMGDAVDISKAAGAPIVGTYELTLEVAEKGIPEAQTVPMNIGGTIKLGDGVEVYMTPALHTANRGAPSGFVIATPQGTVYHAGDTGLFRDMELIAELYDIDVAMLPIGSVFTMGPREAAIATQFLRPRRVVPMHYNTFPLIRQDPEDFKARVEAVSRAKVYIMKPGDVLKL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y953</accession>
    <name>HMGCS_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Hydroxymethylglutaryl-CoA synthase</fullName>
            <shortName evidence="1">HMG-CoA synthase</shortName>
            <shortName evidence="1">HMGCS</shortName>
            <ecNumber evidence="1">2.3.3.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_1356</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the condensation of acetyl-CoA with acetoacetyl-CoA to form 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). Functions in the mevalonate (MVA) pathway leading to isopentenyl diphosphate (IPP), a key precursor for the biosynthesis of isoprenoid compounds that are building blocks of archaeal membrane lipids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetoacetyl-CoA + acetyl-CoA + H2O = (3S)-3-hydroxy-3-methylglutaryl-CoA + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10188"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43074"/>
            <dbReference type="ChEBI" id="CHEBI:57286"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.3.10"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:10189"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Metabolic intermediate biosynthesis; (R)-mevalonate biosynthesis; (R)-mevalonate from acetyl-CoA: step 2/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Interacts with acetoacetyl-CoA thiolase that catalyzes the precedent step in the pathway and with a DUF35 protein. The acetoacetyl-CoA thiolase/HMG-CoA synthase complex channels the intermediate via a fused CoA-binding site, which allows for efficient coupling of the endergonic thiolase reaction with the exergonic HMGCS reaction.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the thiolase-like superfamily. Archaeal HMG-CoA synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.10" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350701.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y953"/>
    <dbReference type="SMR" id="B1Y953"/>
    <dbReference type="STRING" id="444157.Tneu_1356"/>
    <dbReference type="GeneID" id="6164970"/>
    <dbReference type="KEGG" id="tne:Tneu_1356"/>
    <dbReference type="eggNOG" id="arCOG01767">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039592_7_0_2"/>
    <dbReference type="OrthoDB" id="5812at2157"/>
    <dbReference type="UniPathway" id="UPA00058">
        <property type="reaction ID" value="UER00102"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003985">
        <property type="term" value="F:acetyl-CoA C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004421">
        <property type="term" value="F:hydroxymethylglutaryl-CoA synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010142">
        <property type="term" value="P:farnesyl diphosphate biosynthetic process, mevalonate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019287">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, mevalonate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00827">
        <property type="entry name" value="init_cond_enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.47.10:FF:000046">
        <property type="entry name" value="UPF0219 protein M1627_1703"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01409">
        <property type="entry name" value="HMG_CoA_synth_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013747">
        <property type="entry name" value="ACP_syn_III_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004656">
        <property type="entry name" value="HMG_CoA_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00748">
        <property type="entry name" value="HMG_CoA_syn_Arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003274">
        <property type="entry name" value="PRK04262.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43323">
        <property type="entry name" value="3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43323:SF2">
        <property type="entry name" value="HYDROXYMETHYLGLUTARYL-COA SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08541">
        <property type="entry name" value="ACP_syn_III_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="Thiolase-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0012">Acyltransferase</keyword>
    <keyword id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000145510" description="Hydroxymethylglutaryl-CoA synthase">
        <location>
            <begin position="1"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="1">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="1">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="1">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>(3S)-3-hydroxy-3-methylglutaryl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:43074"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>(3S)-3-hydroxy-3-methylglutaryl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:43074"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>(3S)-3-hydroxy-3-methylglutaryl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:43074"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>(3S)-3-hydroxy-3-methylglutaryl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:43074"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>(3S)-3-hydroxy-3-methylglutaryl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:43074"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="241"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <note>ligand shared with acetoacetyl-CoA thiolase</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="245"/>
        </location>
        <ligand>
            <name>(3S)-3-hydroxy-3-methylglutaryl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:43074"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>(3S)-3-hydroxy-3-methylglutaryl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:43074"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="298"/>
        </location>
        <ligand>
            <name>(3S)-3-hydroxy-3-methylglutaryl-CoA</name>
            <dbReference type="ChEBI" id="CHEBI:43074"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01409"/>
        </source>
    </evidence>
    <sequence length="351" mass="38077" checksum="41D88732DDCEB07C" modified="2008-05-20" version="1">MGRVGVVSWGAYIPKYRIRTEEVARIWGDDPLRIVDLYLVDEKSVEGIDEDAVTIAVEAARRALRRATLDPRRIGAVYVGTESKPYAVKPISSILIDALGLSNNVFAVDMEFACKAGSEGLMAAVGLVESGKVEYGMTVGADTSQGEPGEHLEYSASSGGVALVVGREGVAAELEAAYAYASDTPDFWRREGSPYPMHGEGFTGEPAYFRHVINAARGLMAAYGYKPSDFAYAVFHQPNGRFPVRAASTLNIPMEKVKPGIVVTHIGNTYNASALMGFAKVLDQAKPGDKILVVTFGSGAGSNAYVFSATDLIKERQNAAVPTVEAMLRDKIYVDYAQYLKMRKMIKLFEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="91" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y956</accession>
    <name>B1Y956_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">3-hydroxy-3-methylglutaryl coenzyme A reductase</fullName>
            <shortName evidence="5">HMG-CoA reductase</shortName>
            <ecNumber evidence="5">1.1.1.34</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1359</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4 5">
            <text>(R)-mevalonate + 2 NADP(+) + CoA = (3S)-3-hydroxy-3-methylglutaryl-CoA + 2 NADPH + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:15989"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:36464"/>
            <dbReference type="ChEBI" id="CHEBI:43074"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.34"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Metabolic intermediate biosynthesis; (R)-mevalonate biosynthesis; (R)-mevalonate from acetyl-CoA: step 3/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the HMG-CoA reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.34" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350704.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y956"/>
    <dbReference type="STRING" id="444157.Tneu_1359"/>
    <dbReference type="GeneID" id="6164655"/>
    <dbReference type="KEGG" id="tne:Tneu_1359"/>
    <dbReference type="eggNOG" id="arCOG04260">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001734_2_2_2"/>
    <dbReference type="OrthoDB" id="10981at2157"/>
    <dbReference type="UniPathway" id="UPA00058">
        <property type="reaction ID" value="UER00103"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004420">
        <property type="term" value="F:hydroxymethylglutaryl-CoA reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015936">
        <property type="term" value="P:coenzyme A metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016126">
        <property type="term" value="P:sterol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00643">
        <property type="entry name" value="HMG-CoA_reductase_classI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.420:FF:000001">
        <property type="entry name" value="3-hydroxy-3-methylglutaryl coenzyme A reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.770.10">
        <property type="entry name" value="3-hydroxy-3-methylglutaryl-coenzyme A Reductase, Chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3270.10">
        <property type="entry name" value="HMGR, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.420">
        <property type="entry name" value="Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002202">
        <property type="entry name" value="HMG_CoA_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023074">
        <property type="entry name" value="HMG_CoA_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023076">
        <property type="entry name" value="HMG_CoA_Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004554">
        <property type="entry name" value="HMG_CoA_Rdtase_eu_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023282">
        <property type="entry name" value="HMG_CoA_Rdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009023">
        <property type="entry name" value="HMG_CoA_Rdtase_NAD(P)-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009029">
        <property type="entry name" value="HMG_CoA_Rdtase_sub-bd_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00533">
        <property type="entry name" value="HMG_CoA_R_NADP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10572">
        <property type="entry name" value="3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10572:SF24">
        <property type="entry name" value="3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00368">
        <property type="entry name" value="HMG-CoA_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00071">
        <property type="entry name" value="HMGCOARDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55035">
        <property type="entry name" value="NAD-binding domain of HMG-CoA reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56542">
        <property type="entry name" value="Substrate-binding domain of HMG-CoA reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00066">
        <property type="entry name" value="HMG_COA_REDUCTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00318">
        <property type="entry name" value="HMG_COA_REDUCTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50065">
        <property type="entry name" value="HMG_COA_REDUCTASE_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0521">NADP</keyword>
    <keyword evidence="3 5 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00049903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU361219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="395" mass="42412" checksum="7FCD4B2AB0F5D20B" modified="2008-05-20" version="1">MEVKLHEFEKIYGDANKAAEARRQYLEKVTGVKLENIGKTVIDLNTVVGRNIENVIGAVQVPVGVAGPLLIHGDYARGQFYIPLATTEGALVASVNRGAKLITESGGARAKVLRDGMARAPLFRLPSLIDAVEFVQWINQNVEEIKKAAESTTSIGRLREIQPYVVGNYVWLRMVFFTGDAMGMNMVTIASDAAARYIQERFPKAKLVALSGNLCVDKKANAVNFLLGRGKTVVAEAVIKREILQRMGVTPEEVHEVNIRKNLLGSALAHSYGFNAHFANIVAAVFIATGQDVAQVVESSMGITSTEAREEGLYISVFLPSLEVGTVGGGTRLPTQREALELLGVAGSGNPPGTNALKFAEIIAAAVLAGEANLLIALARNELASAHERLGRAKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="96" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y987</accession>
    <name>B1Y987_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Type 2 DNA topoisomerase 6 subunit B</fullName>
            <ecNumber evidence="7">5.6.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Type II DNA topoisomerase VI subunit B</fullName>
            <shortName evidence="7">TopoVI-B</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">top6B</name>
        <name evidence="10" type="ordered locus">Tneu_1391</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Relaxes both positive and negative superturns and exhibits a strong decatenase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6 7">Homodimer. Heterotetramer of two Top6A and two Top6B chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the TOP6B family.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y987"/>
    <dbReference type="STRING" id="444157.Tneu_1391"/>
    <dbReference type="KEGG" id="tne:Tneu_1391"/>
    <dbReference type="eggNOG" id="arCOG01165">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006403_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16933">
        <property type="entry name" value="HATPase_TopVIB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00823">
        <property type="entry name" value="TopoIIB_Trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.565.10:FF:000062">
        <property type="entry name" value="Type 2 DNA topoisomerase 6 subunit B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="entry name" value="Histidine kinase-like ATPase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00322">
        <property type="entry name" value="Top6B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_uS13-like_H2TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribsml_uS5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005734">
        <property type="entry name" value="TopoVI_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015320">
        <property type="entry name" value="TopoVI_B_transducer"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003218">
        <property type="entry name" value="PRK04184.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01052">
        <property type="entry name" value="top6b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48444">
        <property type="entry name" value="DNA TOPOISOMERASE 6 SUBUNIT B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48444:SF1">
        <property type="entry name" value="DNA TOPOISOMERASE 6 SUBUNIT B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09239">
        <property type="entry name" value="Topo-VIb_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006553">
        <property type="entry name" value="TopoVI_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="S13-like H2TH domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 7 10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="1 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="Histidine kinase/HSP90-like ATPase" evidence="8">
        <location>
            <begin position="30"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="DNA topoisomerase VI subunit B transducer" evidence="9">
        <location>
            <begin position="307"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="97"/>
            <end position="98"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="106"/>
            <end position="113"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="424"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00063696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF09239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="530" mass="60195" checksum="A99DEDC45330EA51" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9D3</accession>
    <name>B1Y9D3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heat shock protein Hsp20</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1437</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350781.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9D3"/>
    <dbReference type="STRING" id="444157.Tneu_1437"/>
    <dbReference type="GeneID" id="6164691"/>
    <dbReference type="KEGG" id="tne:Tneu_1437"/>
    <dbReference type="eggNOG" id="arCOG01832">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1954751_0_0_2"/>
    <dbReference type="OrthoDB" id="198277at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd06464">
        <property type="entry name" value="ACD_sHsps-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031107">
        <property type="entry name" value="Small_HSP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11527">
        <property type="entry name" value="HEAT-SHOCK PROTEIN 20 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="HSP20-like chaperones"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="SHSP" evidence="3">
        <location>
            <begin position="19"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="128" mass="14499" checksum="32B2F235E1360623" modified="2008-05-20" version="1">MEPIRKIEEGLKELYDNNAGKVERQPDVDIYDVGDNIVIYIDMPGMRKENIKVRVYDRAVEVTAAPVQPEGGGKPLRRERISNFPVSRKVEVPYRLRVDSARAIYRDGVLQIVVAKAGEYGVAELKID</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9D8</accession>
    <name>B1Y9D8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Actin-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1442</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9D8"/>
    <dbReference type="STRING" id="444157.Tneu_1442"/>
    <dbReference type="KEGG" id="tne:Tneu_1442"/>
    <dbReference type="eggNOG" id="arCOG05584">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1340791_0_0_2"/>
    <dbReference type="OrthoDB" id="27975at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="157"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="198" mass="22217" checksum="51091BB5AD522F19" modified="2008-05-20" version="1">MDLPKLLLVKFFSETLGMRYAGESGWVLLFDEGLNRVAVGVYLAEVYEEAEMYKRVGELLGLGASKIFLAVLPEAMPFVDPRYFKSQGLGLVVVDPSKGPEGVEIKIFAKPRPTPQADLGRADAVRTALMEYVNSQLKKLEETLYEKLKRYVDQRLEEIKRRETTPESPRAEPQPAAPSSVAENEWVRILRSRGRGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9E1</accession>
    <name>B1Y9E1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, TrmB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1445</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350789.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9E1"/>
    <dbReference type="STRING" id="444157.Tneu_1445"/>
    <dbReference type="GeneID" id="6165068"/>
    <dbReference type="KEGG" id="tne:Tneu_1445"/>
    <dbReference type="eggNOG" id="arCOG02037">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096706_0_0_2"/>
    <dbReference type="OrthoDB" id="30795at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051797">
        <property type="entry name" value="TrmB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002831">
        <property type="entry name" value="Tscrpt_reg_TrmB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34293">
        <property type="entry name" value="HTH-TYPE TRANSCRIPTIONAL REGULATOR TRMBL2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34293:SF1">
        <property type="entry name" value="HTH-TYPE TRANSCRIPTIONAL REGULATOR TRMBL2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01978">
        <property type="entry name" value="TrmB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="6"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="239" mass="26982" checksum="ED3F44D9A287D7AB" modified="2008-05-20" version="1">MEGLERVMALLGVGKREVQIYITLVERGALTAREISDALGIPYTKVYQHLNRLEKAGAVNQERGSRPAKFKAVPPSEVYRRLVNTASDVLKTLKPTFDTLQMLYESRYREVAPTFLTLIRGQDRVVDLIQEVVTAAEAEAYLAIPFPEVATYRLLATLTEESRRISIKVLTTEALRQRFDLPPRVEVRTTQEMFGGGAIGGAVVIFVKYGGDISGIYSNERFIAEIARTYFNHLWQRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9F1</accession>
    <name>B1Y9F1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amino acid-binding ACT domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350799.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9F1"/>
    <dbReference type="GeneID" id="6165758"/>
    <dbReference type="KEGG" id="tne:Tneu_1455"/>
    <dbReference type="eggNOG" id="arCOG05586">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1264601_0_0_2"/>
    <dbReference type="OrthoDB" id="25207at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd02116">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="ACT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="1">
        <location>
            <begin position="20"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="219" mass="24419" checksum="E1DA286C81BDEC16" modified="2008-05-20" version="1">MLNREIYLIADGSGGRLGEFLVELNFDQPGILATLSNIFAEHDVNIVNIAIDGPRRHLHFITDLTVVSEEQLQEIVKQLQMFAFVKKVRHRISAAQIFVPRWIIHVINGKPAIAVEKELAAFLQDPQRLAEEMAKRDAKAVKELVASINAVVLEEALYLVQLRGFASVESTAVANGKLTARLCNLAQPLARRYLETFLRELGLQARIVDDGGVCLRLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9G2</accession>
    <name>B1Y9G2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1466</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9G2"/>
    <dbReference type="STRING" id="444157.Tneu_1466"/>
    <dbReference type="KEGG" id="tne:Tneu_1466"/>
    <dbReference type="eggNOG" id="arCOG00492">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_6_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901605">
        <property type="term" value="P:alpha-amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00609">
        <property type="entry name" value="AAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.640.10:FF:000053">
        <property type="entry name" value="Aminotransferase, class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II_large"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050859">
        <property type="entry name" value="Class-I_PLP-dep_aminotransf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42790">
        <property type="entry name" value="AMINOTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42790:SF19">
        <property type="entry name" value="KYNURENINE_ALPHA-AMINOADIPATE AMINOTRANSFERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotransferase class I/classII large" evidence="7">
        <location>
            <begin position="29"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="386" mass="43722" checksum="95F8BA153F51F3C3" modified="2008-05-20" version="1">MTASEIRELLKWLTTDVISFGGGMPDPSTFPVEDIAKITAYVLETYPHAALQYSPTDGVPELRRELAKFVDTYAGIKAKPENVFITVGSQEALEIIGRLFIDPGDVVITENPTYIAALQSWRVYQPRLVGIPMDSQGMIVEKLEEAVKRLKAEGARIKYVYTIPTAQNPSGLTMSQDRRKHLLEVAERYDLLIVEDDPYSYFLFEPIQVTPLKALDRSDRVIYLSTASKIFAPGFRLGWVIANEELVSWFNLAKQALNINTTTFVQYIFMEGLRRNVVLNNLPRVRELYRKKRDAMLAALETHMPPGVSWTKPSGGMFIWATVPPHIDTRELLKVAITKYRVAFVPGHGFSVDQSLRNAMRLNFTYPTFEQIEEGIRRLSMAIKGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9H7</accession>
    <name>B1Y9H7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Family 577 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1481</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350825.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9H7"/>
    <dbReference type="STRING" id="444157.Tneu_1481"/>
    <dbReference type="GeneID" id="6165921"/>
    <dbReference type="KEGG" id="tne:Tneu_1481"/>
    <dbReference type="eggNOG" id="arCOG03761">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078142_0_0_2"/>
    <dbReference type="OrthoDB" id="25805at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="319" mass="35811" checksum="FB23C953B59CA2D9" modified="2008-05-20" version="1">MRFFEEINAARRYRTFVEAVGGVGQLKKTLMWSDWYAVKWWEEIFKELGLSSIRESVFARALYISLKIRGYVGEDGRVRKKVERPGYPTNSYALEFVELHESLDRVGAVNLALNKAGEVVKILASAVPTSGWCRAIRRTFLDVVDVRRFDTIYEPVAKDGAVALSVFELHRPKLYIASDYKRENVELAATVLKAKPEECVRGICIFSAPNICDAAKAVRRYAPEGVSAVLMLFTLNWLVDPVMELSCVASALASGGRLLVGQQVVETMPGFVAMMAALGAKHVLSWRGVEQTLKAAGFRLERRYLRYFPIYVAVWKIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9J3</accession>
    <name>B1Y9J3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1498</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Lipid metabolism; sphingolipid metabolism.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Sphingolipid metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350841.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9J3"/>
    <dbReference type="STRING" id="444157.Tneu_1498"/>
    <dbReference type="CAZy" id="GT2">
        <property type="family name" value="Glycosyltransferase Family 2"/>
    </dbReference>
    <dbReference type="GeneID" id="6165631"/>
    <dbReference type="KEGG" id="tne:Tneu_1498"/>
    <dbReference type="eggNOG" id="arCOG01389">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067021_0_0_2"/>
    <dbReference type="OrthoDB" id="27596at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008120">
        <property type="term" value="F:ceramide glucosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006679">
        <property type="term" value="P:glucosylceramide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00761">
        <property type="entry name" value="Glyco_tranf_GTA_type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025993">
        <property type="entry name" value="Ceramide_glucosylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12726">
        <property type="entry name" value="CERAMIDE GLUCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12726:SF0">
        <property type="entry name" value="CERAMIDE GLUCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11" id="KW-0808">Transferase</keyword>
    <keyword evidence="6 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="256"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="323"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="10">
        <location>
            <begin position="40"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="354" mass="39335" checksum="55FABB29CCD0F4F8" modified="2008-05-20" version="1">MIELAATLPFIGLATAGLFREIRFWSRREPPQGQRCGKICVVIPMRGVYPWTEENLRAITAQRVGAEVEYLFVVDSPEDPAYSLAQKYGRVLLNEGEGKSAALATALKAVDCECVVFADDDIRPGPQWLEALTSPLWRYTAATTYRWYLGRGLCHKVRLAISNTGFPAMMDKRSRFVWGGSTAFRKEFADKVKLAERLPKYVSDDYAVYSAIKEVGGTIWFAKSAIAPTPDPQCGVGEAFWWGVRQILMVKWHAPAGWYAGLFIYTLGFLLSVALPVIGVLTGDIWLLSGLALHPINLVKDLVRARGVRKHAGVPVRALDVAAAWAIGNFVIPLAVWASAFTKCINWRGRRICR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Q3</accession>
    <name>B1Y9Q3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">GTP-binding protein HSR1-related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0017</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349397.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Q3"/>
    <dbReference type="STRING" id="444157.Tneu_0017"/>
    <dbReference type="GeneID" id="6164900"/>
    <dbReference type="KEGG" id="tne:Tneu_0017"/>
    <dbReference type="eggNOG" id="arCOG00350">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011106_1_2_2"/>
    <dbReference type="OrthoDB" id="372125at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01859">
        <property type="entry name" value="MJ1464"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030378">
        <property type="entry name" value="G_CP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023179">
        <property type="entry name" value="GTP-bd_ortho_bundle_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016478">
        <property type="entry name" value="GTPase_MTG1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050755">
        <property type="entry name" value="TRAFAC_YlqF/YawG_RiboMat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11089">
        <property type="entry name" value="GTP-BINDING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11089:SF30">
        <property type="entry name" value="GUANINE NUCLEOTIDE-BINDING PROTEIN-LIKE 3 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006230">
        <property type="entry name" value="MG442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51721">
        <property type="entry name" value="G_CP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CP-type G" evidence="4">
        <location>
            <begin position="5"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR006230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB38975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="259" mass="29039" checksum="BDDF45B03C8A4267" modified="2008-05-20" version="1">MKETWRLVRRVVEDGDVVLEVLDARDPLATRSEEVEELADRLGKRLLVVLNKADLVERGLLEEWRRYFEGLGRAVVYISAKYRLGTRRLITAIRYLAPRIPATVVVVGYPNVGKSTIINYLKGRHVAPTSPKPGWTRGEQLVRAKSWLLVLDTPGIVRATTTGDLALDVVRGLVDPGTVDDPVPYAYALLKRVLSYNPDALREAYGVNCGLEEALEEIGRAKKRLLRGGRVNVEEAARIVLRDWVLGRLRYAAPPPKQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9R8</accession>
    <name>B1Y9R8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1544</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350887.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9R8"/>
    <dbReference type="STRING" id="444157.Tneu_1544"/>
    <dbReference type="GeneID" id="6165167"/>
    <dbReference type="KEGG" id="tne:Tneu_1544"/>
    <dbReference type="eggNOG" id="arCOG01080">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101758_3_0_2"/>
    <dbReference type="OrthoDB" id="45616at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03674">
        <property type="entry name" value="NUDIX_Hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.79.10">
        <property type="entry name" value="Nucleoside Triphosphate Pyrophosphohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43736">
        <property type="entry name" value="ADP-RIBOSE PYROPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43736:SF1">
        <property type="entry name" value="DIHYDRONEOPTERIN TRIPHOSPHATE DIPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="Nudix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="2">
        <location>
            <begin position="3"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="149" mass="16789" checksum="5B13FC8594598A59" modified="2008-05-20" version="1">MVKKCVVASGVLIRDGRVLMIEHKRLGVYLYPGGHVEPGETPIEALIREFEEETGLLVEPLGLMHGIVDSGVVERPLPFAILEEVVSYPEETHIHFDLIYLVREAGGALKNGAWLEVEKLEEVPTYPNVRRVIQLAYETMQHLYRSGKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9V0</accession>
    <name>B1Y9V0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1576</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350919.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9V0"/>
    <dbReference type="STRING" id="444157.Tneu_1576"/>
    <dbReference type="GeneID" id="6166111"/>
    <dbReference type="KEGG" id="tne:Tneu_1576"/>
    <dbReference type="eggNOG" id="arCOG05685">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1607214_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="185" mass="20782" checksum="C3B46A3FC178D446" modified="2008-05-20" version="1">MNPPDLGQLGEYIAEVFLKRHGYKTWRPQEFIRLLEMAAAYRAIEGECGGEPKEPITFSIPTAVGYVKLTYWRGRCLPIEGRRAEPLEYSVYVPCVKRCIEGELGAILEAATPLVELLAERRAMETVDLFAFKDGVFYAVEVKTNGGRVSETQREKAAVLRGIRHLLVRVYLQTPLVKIEALGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9V6</accession>
    <name>B1Y9V6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1582</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350925.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9V6"/>
    <dbReference type="STRING" id="444157.Tneu_1582"/>
    <dbReference type="GeneID" id="6165993"/>
    <dbReference type="KEGG" id="tne:Tneu_1582"/>
    <dbReference type="eggNOG" id="arCOG01269">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_1_0_2"/>
    <dbReference type="OrthoDB" id="43815at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06582">
        <property type="entry name" value="TM_PBP1_LivH_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052157">
        <property type="entry name" value="BCAA_transport_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11795:SF449">
        <property type="entry name" value="BRANCHED-CHAIN AMINO ACID TRANSPORT PERMEASE PROTEIN LIVH-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11795">
        <property type="entry name" value="BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE PROTEIN LIVH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="72"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="108"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="157"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="209"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="238"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="266"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="291"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00037998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="322" mass="34786" checksum="22545C6B2FA5033C" modified="2008-05-20" version="1">MGLFGVDYNTLASAIIFSNIYVLLSLGLNLTYITTKIPSFAHGDLATVGAYISYFAIYFLLMPYLSQLGIPVNVYLTFPLVALAGGAVAVLSYLLVFRPMIKRGAGITPLMIASFGLHFVIFASVALAADYVQSRYGVLTRNVLLSRWELIWPGTDFLTSSLINTTLSVVVTTALLYVLLYRTRYGVIMRASIDNLYLARAVGINVERVFAVAWLLIGAVTGIAGVYMAMYYPMSEELGWLRLALVFVASVVGGLSNIYGAVLGGYVVGLSMVLGAAYILTPLNIPTEFQLAIPFAFVIAILLFAPQGLVGVISQALQRARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA12</accession>
    <name>B1YA12_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1639</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350981.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA12"/>
    <dbReference type="GeneID" id="6165607"/>
    <dbReference type="KEGG" id="tne:Tneu_1639"/>
    <dbReference type="eggNOG" id="arCOG05677">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_428044_0_0_2"/>
    <dbReference type="OrthoDB" id="28826at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="643" mass="71388" checksum="9095335538A84AEA" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA40</accession>
    <name>B1YA40_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0056</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. NEK Ser/Thr protein kinase family. NIMA subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349435.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA40"/>
    <dbReference type="STRING" id="444157.Tneu_0056"/>
    <dbReference type="GeneID" id="6165598"/>
    <dbReference type="KEGG" id="tne:Tneu_0056"/>
    <dbReference type="eggNOG" id="arCOG03682">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036686_0_0_2"/>
    <dbReference type="OrthoDB" id="41005at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14014">
        <property type="entry name" value="STKc_PknB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050660">
        <property type="entry name" value="NEK_Ser/Thr_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43671">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE NEK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43671:SF13">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN KINASE NEK2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="27"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="69"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="95"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="127"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="160"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="8">
        <location>
            <begin position="218"/>
            <end position="477"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="483" mass="53259" checksum="03E6C0B89FD40B45" modified="2008-05-20" version="1">MLSLLWTLPAILAAVAGWRFYRHSVALLWLTAASSLAFLFPEGAALFVNSLVVAAVAARAIFDRFRKPITAVFIVAVVAKLYIFTEYYLDERLSYVYYIADGVFTGLSAFLLLAYTFKPPRVGEALWLLLPASALSSTYTLAVQPLAGAVLALADARPLYVAAAAAANLYLLFTSGDPLPALPASLLVLAYVFTHKRVTYLSPQSPVGWLHAWLGGRYKVVRLLGVGGFSYVLAVKQRGALYAAKILRYVDDYGSPLAGDENILRIFGQEMQRYLEIKSDHVVKAYEVYLPAVGYRDVAQYMRNPPYILLEYMEGGTLRDLLRARKRLSIPEAVELFRQLARGLHDIHKHSVAHLDIKPENIMFTGDRKTAKIGDMGIAKVVSGEYVRSSYMSPAYAAPEVKKGAASLASDVYSLGCVMYEALTGINPNVFVENGYRVPPPSAYNPEVPPWLDELLLKMLDVDPARRPSASELNTFLNRLSGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA41</accession>
    <name>B1YA41_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">FHA domain containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0057</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349436.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA41"/>
    <dbReference type="STRING" id="444157.Tneu_0057"/>
    <dbReference type="GeneID" id="6164616"/>
    <dbReference type="KEGG" id="tne:Tneu_0057"/>
    <dbReference type="eggNOG" id="arCOG05332">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1529286_0_0_2"/>
    <dbReference type="OrthoDB" id="26617at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1060.10">
        <property type="entry name" value="Zinc finger, RanBP2-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001876">
        <property type="entry name" value="Znf_RanBP2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00641">
        <property type="entry name" value="Zn_ribbon_RanBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00240">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SMAD/FHA domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01358">
        <property type="entry name" value="ZF_RANBP2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50199">
        <property type="entry name" value="ZF_RANBP2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RanBP2-type" evidence="5">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="domain" description="FHA" evidence="4">
        <location>
            <begin position="74"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="150" mass="16038" checksum="45378D366C3B4528" modified="2008-05-20" version="1">MPWKCPVCGAENRDEDLTCKICGAYKPEATTKKVAQIPRETATAVLAVEVLESPVESLVGKRFEFRVNSPGVIVTVGRAVDNQIVVPDPAVSRRHMRLIATAGGVVVEDLGSSNGTYLVEGGGERLIKVESVGKQAVVRIGNTRLRVALV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-03" modified="2026-01-28" version="91" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA52</accession>
    <name>DNLI_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA ligase</fullName>
            <ecNumber evidence="1">6.5.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Polydeoxyribonucleotide synthase [ATP]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">lig</name>
        <name type="ordered locus">Tneu_0068</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)m = (deoxyribonucleotide)n+m + AMP + diphosphate.</text>
            <dbReference type="EC" id="6.5.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATP-dependent DNA ligase family.</text>
    </comment>
    <dbReference type="EC" id="6.5.1.1" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349447.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA52"/>
    <dbReference type="SMR" id="B1YA52"/>
    <dbReference type="STRING" id="444157.Tneu_0068"/>
    <dbReference type="GeneID" id="6164678"/>
    <dbReference type="KEGG" id="tne:Tneu_0068"/>
    <dbReference type="eggNOG" id="arCOG01347">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005138_6_0_2"/>
    <dbReference type="OrthoDB" id="31274at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003910">
        <property type="term" value="F:DNA ligase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071897">
        <property type="term" value="P:DNA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006273">
        <property type="term" value="P:lagging strand elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07901">
        <property type="entry name" value="Adenylation_DNA_ligase_Arch_LigB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd07969">
        <property type="entry name" value="OBF_DNA_ligase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.3260.10:FF:000007">
        <property type="entry name" value="DNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.50.140:FF:000062">
        <property type="entry name" value="DNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.470.30:FF:000012">
        <property type="entry name" value="Probable DNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3260.10">
        <property type="entry name" value="DNA ligase, ATP-dependent, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.30">
        <property type="entry name" value="DNA ligase/mRNA capping enzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00407">
        <property type="entry name" value="DNA_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050191">
        <property type="entry name" value="ATP-dep_DNA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022865">
        <property type="entry name" value="DNA_ligae_ATP-dep_bac/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000977">
        <property type="entry name" value="DNA_ligase_ATP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012309">
        <property type="entry name" value="DNA_ligase_ATP-dep_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012310">
        <property type="entry name" value="DNA_ligase_ATP-dep_cent"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016059">
        <property type="entry name" value="DNA_ligase_ATP-dep_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012308">
        <property type="entry name" value="DNA_ligase_ATP-dep_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036599">
        <property type="entry name" value="DNA_ligase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00574">
        <property type="entry name" value="dnl1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45674:SF4">
        <property type="entry name" value="DNA LIGASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45674">
        <property type="entry name" value="DNA LIGASE 1/3 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04679">
        <property type="entry name" value="DNA_ligase_A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01068">
        <property type="entry name" value="DNA_ligase_A_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04675">
        <property type="entry name" value="DNA_ligase_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117018">
        <property type="entry name" value="ATP-dependent DNA ligase DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56091">
        <property type="entry name" value="DNA ligase/mRNA capping enzyme, catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00697">
        <property type="entry name" value="DNA_LIGASE_A1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50160">
        <property type="entry name" value="DNA_LIGASE_A3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0131">Cell cycle</keyword>
    <keyword id="KW-0132">Cell division</keyword>
    <keyword id="KW-0227">DNA damage</keyword>
    <keyword id="KW-0233">DNA recombination</keyword>
    <keyword id="KW-0234">DNA repair</keyword>
    <keyword id="KW-0235">DNA replication</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000365267" description="DNA ligase">
        <location>
            <begin position="1"/>
            <end position="584"/>
        </location>
    </feature>
    <feature type="active site" description="N6-AMP-lysine intermediate" evidence="1">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="256"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="271"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="301"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="341"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="416"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="422"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00407"/>
        </source>
    </evidence>
    <sequence length="584" mass="64534" checksum="01180CAA003A28EA" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA65</accession>
    <name>B1YA65_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0081</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349460.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA65"/>
    <dbReference type="STRING" id="444157.Tneu_0081"/>
    <dbReference type="GeneID" id="6164306"/>
    <dbReference type="KEGG" id="tne:Tneu_0081"/>
    <dbReference type="eggNOG" id="arCOG04140">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_179754_0_0_2"/>
    <dbReference type="OrthoDB" id="201945at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1340">
        <property type="entry name" value="MTH889-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003831">
        <property type="entry name" value="DUF211"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023129">
        <property type="entry name" value="MTH889-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42240">
        <property type="entry name" value="DUF211 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42240:SF1">
        <property type="entry name" value="DUF211 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02680">
        <property type="entry name" value="DUF211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160363">
        <property type="entry name" value="MTH889-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="97" mass="10338" checksum="6BC64EF86FE4B3F9" modified="2008-05-20" version="1">MGERPPIRRIVIDAAIPTKGITIVDVAKELYRVEGVKAVRVTVDDVDVDVLGLAIVVEGVNVDYGELEKALERVGGVVHSIDEVVVGEYIPEAGATT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA91</accession>
    <name>B1YA91_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0107</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349486.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA91"/>
    <dbReference type="STRING" id="444157.Tneu_0107"/>
    <dbReference type="GeneID" id="6164531"/>
    <dbReference type="KEGG" id="tne:Tneu_0107"/>
    <dbReference type="eggNOG" id="arCOG07060">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2021596_0_0_2"/>
    <dbReference type="OrthoDB" id="383123at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="107" mass="11745" checksum="2125B8AAB59AF4CB" modified="2008-05-20" version="1">MKIKMKCPVCGRQIYIEAPPVDGLREFVVLHGDHAAKIYIDEHHFVRRAWPAPLLKAEEEEAPRQAYGVFVGRGRAVVVGPGGEKLAELPTGELGAAVTLAEKLEMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA92</accession>
    <name>B1YA92_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Roadblock/LC7 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0108</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349487.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA92"/>
    <dbReference type="STRING" id="444157.Tneu_0108"/>
    <dbReference type="GeneID" id="6166172"/>
    <dbReference type="KEGG" id="tne:Tneu_0108"/>
    <dbReference type="eggNOG" id="arCOG02603">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_161802_0_0_2"/>
    <dbReference type="OrthoDB" id="382198at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032006">
        <property type="term" value="P:regulation of TOR signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.30">
        <property type="entry name" value="Dynein light chain 2a, cytoplasmic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015019">
        <property type="entry name" value="LAMTOR3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004942">
        <property type="entry name" value="Roadblock/LAMTOR2_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08923">
        <property type="entry name" value="MAPKK1_Int"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01278">
        <property type="entry name" value="MAPKK1_Int"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00960">
        <property type="entry name" value="Robl_LC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103196">
        <property type="entry name" value="Roadblock/LC7 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Roadblock/LAMTOR2" evidence="1">
        <location>
            <begin position="6"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="117" mass="12629" checksum="9E9AE4DDA6FB7F61" modified="2008-05-20" version="1">MESKYREELSLFLSRTGGDVLGAVMARRDGLPVASAAPGMDPKAISALAALALGTLRKVGDELKIGGVRQVVAYYDSRVIVMWPARELYIIAVANADANIGLIFLELERLAKRLAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA97</accession>
    <name>B1YA97_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0113</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349492.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA97"/>
    <dbReference type="STRING" id="444157.Tneu_0113"/>
    <dbReference type="GeneID" id="6166228"/>
    <dbReference type="KEGG" id="tne:Tneu_0113"/>
    <dbReference type="eggNOG" id="arCOG05475">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_622048_0_0_2"/>
    <dbReference type="OrthoDB" id="28382at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="440" mass="47618" checksum="7B1A7C1156B4FE76" modified="2008-05-20" version="1">MRGLESVELVVTVALLLAFVGGTYYFFTWVSDFSKQQQLQADLSAQAQNVLDRIIYYRPYNPLKELGVGLDGRYVDDRYIALYALAAGGRPPGQTCTIQSQALASAVGTSQATLVGRGWLYVDPQQLSLDYVDIVKDLFGSVAPDGVTPLYNKYDLWLTITPVVNATCSINNDGTASLQLFTTYGRRPVDGKVVYTILYAAPSGSSGVLCSKTGVGYTQGGTLVVKWQDQLTCDPQGTVVPDTNTGTLVVIFEKIDRPATLCYAVAGKQRPLAYGFVLPTSSGPVLYIAHDATVSCGSGNLPALGVRYVDLFWGGSRYRVASDVTLDPGVGRGRVKVDRCSACTGSSQCAACYIDGIPPAAKLAVIYVERNSQGQSDQTPLVDLIVVPVAPYPPLMRVDVRTWLRWGFVNTPQVYSAVATRVVDSPTSTYNFTLVLYRWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAE7</accession>
    <name>B1YAE7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phosphoribosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1674</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351015.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAE7"/>
    <dbReference type="STRING" id="444157.Tneu_1674"/>
    <dbReference type="GeneID" id="6165318"/>
    <dbReference type="KEGG" id="tne:Tneu_1674"/>
    <dbReference type="eggNOG" id="arCOG00040">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080904_0_0_2"/>
    <dbReference type="OrthoDB" id="4952at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRTase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43363">
        <property type="entry name" value="HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43363:SF2">
        <property type="entry name" value="PHOSPHORIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="PRTase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phosphoribosyltransferase" evidence="3">
        <location>
            <begin position="18"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="220" mass="25073" checksum="23A8AB8A2EA3B0B2" modified="2008-05-20" version="1">MPKIPVKVVSFDEIVEWSRKLAERIKESGWQPDVIVAVARGGYVPARLLCDWLGVSDLLSVQVVHWPTAAQVAEKAYVKYPVNVDLSGKRVLVVDDIVDTGDSIELAKRTIEQCCRPAEVKTAALQVITSVAKFMPDYYAIEVKEWVWFAYQWNAVEDAAGFIMKIVKETGKADWCLDEMIQAHMEWYGGDYVEKRFGYIMYALETLAKRGHIKLHRCRS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAF1</accession>
    <name>RL39_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein eL39</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L39e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl39e</name>
        <name type="ordered locus">Tneu_1678</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL39 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351019.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAF1"/>
    <dbReference type="SMR" id="B1YAF1"/>
    <dbReference type="STRING" id="444157.Tneu_1678"/>
    <dbReference type="GeneID" id="6165267"/>
    <dbReference type="KEGG" id="tne:Tneu_1678"/>
    <dbReference type="eggNOG" id="arCOG04177">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_181948_4_0_2"/>
    <dbReference type="OrthoDB" id="65887at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1620.10">
        <property type="entry name" value="Ribosomal protein L39e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00629">
        <property type="entry name" value="Ribosomal_eL39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000077">
        <property type="entry name" value="Ribosomal_eL39"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020083">
        <property type="entry name" value="Ribosomal_eL39_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023626">
        <property type="entry name" value="Ribosomal_eL39_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002316">
        <property type="entry name" value="PRK01242.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00832">
        <property type="entry name" value="Ribosomal_L39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48662">
        <property type="entry name" value="Ribosomal protein L39e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00051">
        <property type="entry name" value="RIBOSOMAL_L39E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000130582" description="Large ribosomal subunit protein eL39">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="51" mass="5995" checksum="FF6DC5987845C2EC" modified="2008-05-20" version="1">MARNKPLGKKLRLAAALRSNRNPPVWVVAKTKRRVVRSPARRHWRRVKLKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAI0</accession>
    <name>B1YAI0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1709</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351048.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAI0"/>
    <dbReference type="STRING" id="444157.Tneu_1709"/>
    <dbReference type="GeneID" id="6165447"/>
    <dbReference type="KEGG" id="tne:Tneu_1709"/>
    <dbReference type="eggNOG" id="arCOG04017">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_149114_0_0_2"/>
    <dbReference type="OrthoDB" id="25485at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="137" mass="15163" checksum="FE8E31E736980987" modified="2008-05-20" version="1">MALRVRIRLRAGRREVETSALVNTGFESSAPDVAVPVEVARRLGLWPPKSARVVSADTGGGEVEMVYIEAGAEIEVEGRRASVNILVNPYIDEVLISDFLAGELGIVILDAKRGHWRFKDEEALRSSVEPQRWPRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAI7</accession>
    <name>B1YAI7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endoribonuclease L-PSP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1716</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the RutC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351055.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAI7"/>
    <dbReference type="STRING" id="444157.Tneu_1716"/>
    <dbReference type="GeneID" id="6165412"/>
    <dbReference type="KEGG" id="tne:Tneu_1716"/>
    <dbReference type="eggNOG" id="arCOG01630">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100715_7_3_2"/>
    <dbReference type="OrthoDB" id="371655at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019239">
        <property type="term" value="F:deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00448">
        <property type="entry name" value="YjgF_YER057c_UK114_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1330.40:FF:000001">
        <property type="entry name" value="L-PSP family endoribonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="entry name" value="RutC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006056">
        <property type="entry name" value="RidA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006175">
        <property type="entry name" value="YjgF/YER057c/UK114"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00004">
        <property type="entry name" value="Rid family detoxifying hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11803">
        <property type="entry name" value="2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11803:SF39">
        <property type="entry name" value="2-IMINOBUTANOATE_2-IMINOPROPANOATE DEAMINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01042">
        <property type="entry name" value="Ribonuc_L-PSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="YjgF-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="124" mass="13720" checksum="B7A28FE2901C2244" modified="2008-05-20" version="1">MKEVVYTENAPKPIGPYSQAVKAGNMLFVSGQIPVDPKTGEVVRGGIREQTKQVMENIKAVLEAAGYNLEDVVMAFVFLADLSTFQEYNEVYSQYFKKPPARVTVQAARLPKDVLIEVAVIAVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="92" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAK0</accession>
    <name>B1YAK0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Elongation factor 1-alpha</fullName>
            <shortName evidence="11">EF-1-alpha</shortName>
            <ecNumber evidence="11">3.6.5.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Elongation factor Tu</fullName>
            <shortName evidence="11">EF-Tu</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">tuf</name>
        <name evidence="13" type="ordered locus">Tneu_1731</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">GTP hydrolase that promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>GTP + H2O = GDP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="3.6.5.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>GTP + H2O = GDP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="10">
            <dbReference type="Rhea" id="RHEA:19670"/>
        </physiologicalReaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.3" evidence="11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351068.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAK0"/>
    <dbReference type="STRING" id="444157.Tneu_1731"/>
    <dbReference type="GeneID" id="6164825"/>
    <dbReference type="KEGG" id="tne:Tneu_1731"/>
    <dbReference type="eggNOG" id="arCOG01561">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007265_3_5_2"/>
    <dbReference type="OrthoDB" id="371718at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01883">
        <property type="entry name" value="EF1_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03693">
        <property type="entry name" value="EF1_alpha_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03705">
        <property type="entry name" value="EF1_alpha_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.10:FF:000005">
        <property type="entry name" value="Elongation factor 1-alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.30.10:FF:000020">
        <property type="entry name" value="Translation elongation factor EF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000204">
        <property type="entry name" value="Translation elongation factor Tu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.10">
        <property type="entry name" value="Translation factors"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00118_A">
        <property type="entry name" value="EF_Tu_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054696">
        <property type="entry name" value="GTP-eEF1A_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050100">
        <property type="entry name" value="TRAFAC_GTPase_members"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004539">
        <property type="entry name" value="Transl_elong_EF1A_euk/arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00483">
        <property type="entry name" value="EF-1_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF008969">
        <property type="entry name" value="PRK12317.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23115">
        <property type="entry name" value="TRANSLATION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22594">
        <property type="entry name" value="GTP-eEF1A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="Translation proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 11 13" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="9 11" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8 11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Tr-type G" evidence="12">
        <location>
            <begin position="15"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="24"/>
            <end position="31"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="101"/>
            <end position="105"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="163"/>
            <end position="166"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00049117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB40649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="444" mass="48675" checksum="E9C869E45335CBCE" modified="2008-05-20" version="1">MPSIVLPPKPTALQKPHLNLAVVGHVDNGKSTLVGRLLYETGYVDEKAFKEIEEMAKKMGKEDFAFAWILDRFKEERERGVTIEATHVGFETGKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGIQQLVVAVNKMDAVNYDQKRYEQVKAEVSKLLKLLGYDPSKIQFVPVSAIKGDNIKAKSSNTPWYNGPALLEVLDTFQPPPRPTDKPLRMPIQDVFTITGAGTVVVGRVETGVLKVGDRVVVVPPAKVGDVRSIETHHMKLEQAQPGDNVGVNVRGIGKEDVKRGDVLGKVDNVPTVAEEIVARIVILWHPTAIGPGYAPVMHIHTATVPVQITELISKLDPRTGQAVEQKPQFIKQGDVALVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQIIEVKPAQVQIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAN2</accession>
    <name>B1YAN2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Imidazole glycerol phosphate synthase subunit HisF</fullName>
            <ecNumber evidence="6">4.3.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">IGP synthase cyclase subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">IGP synthase subunit HisF</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">ImGP synthase subunit HisF</fullName>
            <shortName evidence="6">IGPS subunit HisF</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">hisF</name>
        <name evidence="8" type="ordered locus">Tneu_0154</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + L-glutamine = D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate + 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + L-glutamate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:24793"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="ChEBI" id="CHEBI:58525"/>
            <dbReference type="EC" id="4.3.2.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 6">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 5/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Heterodimer of HisH and HisF.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the HisA/HisF family.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.10" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAN2"/>
    <dbReference type="STRING" id="444157.Tneu_0154"/>
    <dbReference type="KEGG" id="tne:Tneu_0154"/>
    <dbReference type="eggNOG" id="arCOG00617">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048577_4_0_2"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000107">
        <property type="term" value="F:imidazoleglycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:L-histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04731">
        <property type="entry name" value="HisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01013">
        <property type="entry name" value="HisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006062">
        <property type="entry name" value="His_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004651">
        <property type="entry name" value="HisF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050064">
        <property type="entry name" value="IGPS_HisA/HisF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00735">
        <property type="entry name" value="hisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21235:SF2">
        <property type="entry name" value="IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21235">
        <property type="entry name" value="IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00977">
        <property type="entry name" value="His_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="Ribulose-phoshate binding barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 7" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="4 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="6">
        <location>
            <position position="17"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00047838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="258" mass="27330" checksum="616EBFCFBE6A3431" modified="2008-05-20" version="1">MYYIGPMPAVRVIPCLDMDGRAGVVVKGVNFMGIREVGDPVEMAVRYEEEGADEIAVLDITATPEGRGTFIDSVRRVASSVTIPVLVGGGVRSLSDAEALFKAGADKVSVNTAAVKNPQLVAEMAREFGSQSTVVAIDAKLVGGRYEVYVRGGRDPTGLDAVEWAKKVEELGAGEILLTSIDRDGTKLGYDVELLRRVAHSVKIPVIASGGAGELKHFYEAVAAGADAVLAASLFHFRVVEVAEVKRYLGGLGVEVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAQ2</accession>
    <name>B1YAQ2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dinitrogenase iron-molybdenum cofactor biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349552.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAQ2"/>
    <dbReference type="STRING" id="444157.Tneu_0175"/>
    <dbReference type="GeneID" id="6165065"/>
    <dbReference type="KEGG" id="tne:Tneu_0175"/>
    <dbReference type="eggNOG" id="arCOG02734">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_104194_2_1_2"/>
    <dbReference type="OrthoDB" id="25911at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.130">
        <property type="entry name" value="Dinitrogenase iron-molybdenum cofactor biosynthesis domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003731">
        <property type="entry name" value="Di-Nase_FeMo-co_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036105">
        <property type="entry name" value="DiNase_FeMo-co_biosyn_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42983">
        <property type="entry name" value="DINITROGENASE IRON-MOLYBDENUM COFACTOR PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42983:SF1">
        <property type="entry name" value="IRON-MOLYBDENUM PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02579">
        <property type="entry name" value="Nitro_FeMo-Co"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53146">
        <property type="entry name" value="Nitrogenase accessory factor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Dinitrogenase iron-molybdenum cofactor biosynthesis" evidence="1">
        <location>
            <begin position="14"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="117" mass="13363" checksum="976262A6A7A4874B" modified="2008-05-20" version="1">MRVLIPVEENKGLQSPISDEFGEAPFFLVVDGDRVEGYKNEEVITGRGHRWEEILKLKPDVVVTREIGRPAFYAFKAKGVKIYLAEGATVAEALDKLRRGELREFPPELAHEPRHRH</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="96" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAZ7</accession>
    <name>SYM_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methionine--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Methionyl-tRNA synthetase</fullName>
            <shortName evidence="1">MetRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">metG</name>
        <name type="ordered locus">Tneu_1779</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the attachment of L-methionine to tRNA(Met). Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>tRNA(Met) + L-methionine + ATP = L-methionyl-tRNA(Met) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:13481"/>
            <dbReference type="Rhea" id="RHEA-COMP:9667"/>
            <dbReference type="Rhea" id="RHEA-COMP:9698"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78530"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.10"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:13482"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.10" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351116.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAZ7"/>
    <dbReference type="SMR" id="B1YAZ7"/>
    <dbReference type="STRING" id="444157.Tneu_1779"/>
    <dbReference type="GeneID" id="6165644"/>
    <dbReference type="KEGG" id="tne:Tneu_1779"/>
    <dbReference type="eggNOG" id="arCOG00810">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009710_1_2_2"/>
    <dbReference type="OrthoDB" id="371856at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017101">
        <property type="term" value="C:aminoacyl-tRNA synthetase multienzyme complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004825">
        <property type="term" value="F:methionine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006431">
        <property type="term" value="P:methionyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07957">
        <property type="entry name" value="Anticodon_Ia_Met"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00814">
        <property type="entry name" value="MetRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.28.20:FF:000001">
        <property type="entry name" value="Methionine--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.730.10">
        <property type="entry name" value="Isoleucyl-tRNA Synthetase, Domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.20">
        <property type="entry name" value="Methionyl-tRNA synthetase, Zn-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00098">
        <property type="entry name" value="Met_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041872">
        <property type="entry name" value="Anticodon_Met"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023458">
        <property type="entry name" value="Met-tRNA_ligase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014758">
        <property type="entry name" value="Met-tRNA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015413">
        <property type="entry name" value="Methionyl/Leucyl_tRNA_Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033911">
        <property type="entry name" value="MetRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029038">
        <property type="entry name" value="MetRS_Zn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00398">
        <property type="entry name" value="metG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45765">
        <property type="entry name" value="METHIONINE--TRNA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45765:SF1">
        <property type="entry name" value="METHIONINE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19303">
        <property type="entry name" value="Anticodon_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09334">
        <property type="entry name" value="tRNA-synt_1g"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01041">
        <property type="entry name" value="TRNASYNTHMET"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57770">
        <property type="entry name" value="Methionyl-tRNA synthetase (MetRS), Zn-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000093738" description="Methionine--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="1">
        <location>
            <begin position="11"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="1">
        <location>
            <begin position="329"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="332"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00098"/>
        </source>
    </evidence>
    <sequence length="565" mass="65274" checksum="1ADC627549D27822" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB04</accession>
    <name>B1YB04_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1786</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351123.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB04"/>
    <dbReference type="STRING" id="444157.Tneu_1786"/>
    <dbReference type="GeneID" id="6165184"/>
    <dbReference type="KEGG" id="tne:Tneu_1786"/>
    <dbReference type="eggNOG" id="arCOG01618">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023205_2_3_2"/>
    <dbReference type="OrthoDB" id="7236at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd19093">
        <property type="entry name" value="AKR_AtPLR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="entry name" value="NADP-dependent oxidoreductase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050523">
        <property type="entry name" value="AKR_Detox_Biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018170">
        <property type="entry name" value="Aldo/ket_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NAD(P)_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43364:SF4">
        <property type="entry name" value="NAD(P)-LINKED OXIDOREDUCTASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43364">
        <property type="entry name" value="NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="NAD(P)-linked oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00062">
        <property type="entry name" value="ALDOKETO_REDUCTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADP-dependent oxidoreductase" evidence="2">
        <location>
            <begin position="16"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="317" mass="35478" checksum="422A269F35C6DBE5" modified="2008-05-20" version="1">MDKVRLGKTDMLVSRVGLGAWQFSGDAWGAITYEQAKAVVAKAAEAGINFFDTAAVYGRGKSEEYLGRALKELGLRGHVYIATKIHGDWLRRADVLTSAENQRRRLGVDAIDLYQVHWPACWHNTPICETMKTLEELVDRGLVRYIGVSNFPVQLLDYARSCLSRVDIATSQNRYNLVEREADKELLPYLKREGIALIAWSPLAKGLLTGKYSAESPPTFEDVRRADPLFLPQNLRLVQPLIDELKRLAAAYGKTPAQIALNWLTRDPSVVPIPGAKTPQQAEENAGAAGWTLSEEDWRRLDALGREISQKITYVAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB12</accession>
    <name>B1YB12_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1794</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351131.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB12"/>
    <dbReference type="STRING" id="444157.Tneu_1794"/>
    <dbReference type="GeneID" id="6165086"/>
    <dbReference type="KEGG" id="tne:Tneu_1794"/>
    <dbReference type="eggNOG" id="arCOG01543">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067218_4_6_2"/>
    <dbReference type="OrthoDB" id="23833at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016651">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010226">
        <property type="entry name" value="NADH_quinone_OxRdtase_chainI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10849">
        <property type="entry name" value="NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="37"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="71"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="132" mass="15003" checksum="0088EBDADC3AAEB9" modified="2008-05-20" version="1">MIAHLKMFGVALKYVFQRPITVRWPEERRDYGDRMRGFIVNDRGKCISCQLCEAVCPAKAIKFHLEADGRRYPGIDWGRCILCGYCVDACPTGSLKYVNNTEIVWTDLNVYRKPAEMDPDDVAPLAGTKSLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB59</accession>
    <name>B1YB59_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0237</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349611.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB59"/>
    <dbReference type="STRING" id="444157.Tneu_0237"/>
    <dbReference type="GeneID" id="6165976"/>
    <dbReference type="KEGG" id="tne:Tneu_0237"/>
    <dbReference type="eggNOG" id="arCOG00017">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1168612_0_0_2"/>
    <dbReference type="OrthoDB" id="42697at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00657">
        <property type="entry name" value="Ferritin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40730:SF3">
        <property type="entry name" value="HTH CRO_C1-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40730">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR PROTEIN-LIKE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="Ferritin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="14"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="237" mass="26181" checksum="970F9B8489BE1042" modified="2008-05-20" version="1">MSLERVLSAVRALLARELVERGLSVNETARLLGLTPAAVSMYLSGKRGGELVGVLASDERVMALVRSHAELFVDAAKRGARGPIDLTELAKVISNILAQKTPGVELEELIRERIRLEQETATRAMAYSYRMRNPLVRALFMQIATDSLRHAEILTMILDHLTGRLKADGLDISEEELEALAQEEASMRESIADLYKVGDPVLRALILSIELDEQKHFQLIKALQLAPRLPRGNPGPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB93</accession>
    <name>B1YB93_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0272</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349645.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB93"/>
    <dbReference type="STRING" id="444157.Tneu_0272"/>
    <dbReference type="GeneID" id="6165535"/>
    <dbReference type="KEGG" id="tne:Tneu_0272"/>
    <dbReference type="eggNOG" id="arCOG01775">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1451485_0_0_2"/>
    <dbReference type="OrthoDB" id="1018at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43591">
        <property type="entry name" value="METHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="domain" description="Methyltransferase type 11" evidence="2">
        <location>
            <begin position="45"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="182" mass="19899" checksum="065A64CFD5047880" modified="2008-05-20" version="1">MEFERFGSFSSAFYSLLVSLGVFEWAYGATYGAVQRAVPRGGRLLEVGPGVGALLRRLVETGYDAVGVDASPEMLKRSRAKSVSVAGVSFRLPFRDEIFDAAVALFTLHHWGDHGPSLREVKRVLKPGGVFIAVEADQARLPLVGSHGCTSRCLRDVLSAEFEAAVERRFPLLLAYARKPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBB3</accession>
    <name>B1YBB3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0292</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349665.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBB3"/>
    <dbReference type="STRING" id="444157.Tneu_0292"/>
    <dbReference type="GeneID" id="6165871"/>
    <dbReference type="KEGG" id="tne:Tneu_0292"/>
    <dbReference type="eggNOG" id="arCOG06991">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1478967_0_0_2"/>
    <dbReference type="OrthoDB" id="384650at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="141"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="179"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="202" mass="21916" checksum="A364F320B8E83A24" modified="2008-05-20" version="1">MPLRGLKAYFIIGALAALAQTAFLYAFAAPLAEHLHVKLAVEEAEEEYADWAIPLVAVFYGGMLGVVYHFFSRGQEPAEAAAVMFFAMSLLPGLKWLPTPHGVSYVEPVEWREAVHGLYVAYNVLSAAAVAGLVKRPYARAALLALAWLVGFYVAPPFTLPEKYAAALPDLRALQGLSLASWGLFWLILGAGGRVLAPIRRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBH4</accession>
    <name>B1YBH4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Putative [LysW]-lysine/[LysW]-ornithine hydrolase</fullName>
            <ecNumber evidence="9">3.5.1.130</ecNumber>
            <ecNumber evidence="9">3.5.1.132</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">lysK</name>
        <name evidence="11" type="ordered locus">Tneu_1861</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the release of L-lysine from [LysW]-gamma-L-lysine and the release of L-ornithine from [LysW]-L-ornithine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>[amino-group carrier protein]-C-terminal-gamma-(L-lysyl)-L-glutamate + H2O = [amino-group carrier protein]-C-terminal-L-glutamate + L-lysine</text>
            <dbReference type="Rhea" id="RHEA:48684"/>
            <dbReference type="Rhea" id="RHEA-COMP:9693"/>
            <dbReference type="Rhea" id="RHEA-COMP:9715"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:78525"/>
            <dbReference type="ChEBI" id="CHEBI:78526"/>
            <dbReference type="EC" id="3.5.1.130"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>[amino-group carrier protein]-C-terminal-gamma-(L-ornithyl)-L-glutamate + H2O = [amino-group carrier protein]-C-terminal-L-glutamate + L-ornithine</text>
            <dbReference type="Rhea" id="RHEA:52676"/>
            <dbReference type="Rhea" id="RHEA-COMP:9693"/>
            <dbReference type="Rhea" id="RHEA-COMP:13328"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:78525"/>
            <dbReference type="ChEBI" id="CHEBI:136763"/>
            <dbReference type="EC" id="3.5.1.132"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="9">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <text evidence="9">Binds 2 Zn(2+) or Co(2+) ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="9">Amino-acid biosynthesis; L-arginine biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="9">Amino-acid biosynthesis; L-lysine biosynthesis via AAA pathway; L-lysine from L-alpha-aminoadipate (Thermus route): step 5/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the peptidase M20A family. LysK subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.130" evidence="9"/>
    <dbReference type="EC" id="3.5.1.132" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351195.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBH4"/>
    <dbReference type="STRING" id="444157.Tneu_1861"/>
    <dbReference type="GeneID" id="6164830"/>
    <dbReference type="KEGG" id="tne:Tneu_1861"/>
    <dbReference type="eggNOG" id="arCOG01107">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021802_2_0_2"/>
    <dbReference type="OrthoDB" id="133929at2157"/>
    <dbReference type="UniPathway" id="UPA00033">
        <property type="reaction ID" value="UER00039"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050897">
        <property type="term" value="F:cobalt ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:L-arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019878">
        <property type="term" value="P:lysine biosynthetic process via aminoadipic acid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.10">
        <property type="entry name" value="Zn peptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01120">
        <property type="entry name" value="LysK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010175">
        <property type="entry name" value="LysK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050072">
        <property type="entry name" value="Peptidase_M20A"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01902">
        <property type="entry name" value="dapE-lys-deAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43808:SF28">
        <property type="entry name" value="[LYSW]-LYSINE_[LYSW]-ORNITHINE HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43808">
        <property type="entry name" value="ACETYLORNITHINE DEACETYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="Bacterial exopeptidase dimerisation domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53187">
        <property type="entry name" value="Zn-dependent exopeptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 9" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0170">Cobalt</keyword>
    <keyword evidence="1 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 9" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="4 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase M20 dimerisation" evidence="10">
        <location>
            <begin position="150"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="9">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="309"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="335" mass="36499" checksum="919D9669573F3122" modified="2008-05-20" version="1">MDAAAFLEEVLKIYSPPHGEGELAKWLLRYLRDHVSDVWIDEAGNVVAVRGRGEPVVWLHAHMDTVPGPLPVRREGDVLWGRGAVDDKGPLAAYTKAFLEAEPRGTVVLALVTAEEDDSAGTEALLRGGPPRPRYIYVGEPTSLHVAYAYRGGAKVYIELESRGGHASSPIYGNIVEELYAVYQEVKRALGHAERYDAFTVTPTLVNCGDAPNKIPTRCTMVLDVRIPPGRTCRDLLAALPPQARAKSCVEPAEVSPTNQAARALVRGLLKLGLEPKLSRKWGTADFNLLVDLTRDIAAFGPGDPRLAHTEDEHIDIKEVELAAVVLKNAIAELK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBJ7</accession>
    <name>B1YBJ7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1884</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351218.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBJ7"/>
    <dbReference type="STRING" id="444157.Tneu_1884"/>
    <dbReference type="GeneID" id="58787355"/>
    <dbReference type="KEGG" id="tne:Tneu_1884"/>
    <dbReference type="eggNOG" id="arCOG04200">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_198006_0_0_2"/>
    <dbReference type="OrthoDB" id="23408at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="55" mass="6425" checksum="776930AFAC82EF66" modified="2008-05-20" version="1">MKHKLKFYDIKAKKAFETDQYETVEKQTARGPMIFAVAKSPYTGIKVYRLIGKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBL8</accession>
    <name>B1YBL8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Phosphoribosylformylglycinamidine synthase subunit PurQ</fullName>
            <shortName evidence="8">FGAM synthase</shortName>
            <ecNumber evidence="8">6.3.5.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Formylglycinamide ribonucleotide amidotransferase subunit I</fullName>
            <shortName evidence="8">FGAR amidotransferase I</shortName>
            <shortName evidence="8">FGAR-AT I</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Glutaminase PurQ</fullName>
            <ecNumber evidence="8">3.5.1.2</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Phosphoribosylformylglycinamidine synthase subunit I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">purQ</name>
        <name evidence="9" type="ordered locus">Tneu_1905</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-glutamine + H2O = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="3.5.1.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide + L-glutamine + ATP + H2O = 2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + L-glutamate + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17129"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="6.3.5.3" evidence="8"/>
    <dbReference type="EC" id="3.5.1.2" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351239.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBL8"/>
    <dbReference type="STRING" id="444157.Tneu_1905"/>
    <dbReference type="GeneID" id="6164898"/>
    <dbReference type="KEGG" id="tne:Tneu_1905"/>
    <dbReference type="eggNOG" id="arCOG00102">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001031_3_1_2"/>
    <dbReference type="OrthoDB" id="6486at2157"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004642">
        <property type="term" value="F:phosphoribosylformylglycinamidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01740">
        <property type="entry name" value="GATase1_FGAR_AT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00421">
        <property type="entry name" value="PurQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010075">
        <property type="entry name" value="PRibForGlyAmidine_synth_PurQ"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01737">
        <property type="entry name" value="FGAM_synth_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002957">
        <property type="entry name" value="PRK03619.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47552">
        <property type="entry name" value="PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47552:SF1">
        <property type="entry name" value="PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13507">
        <property type="entry name" value="GATase_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001586">
        <property type="entry name" value="FGAM_synth_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01211">
        <property type="entry name" value="GATase_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="Class I glutamine amidotransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51273">
        <property type="entry name" value="GATASE_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 8" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Nucleophile" evidence="8">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="184"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="213" mass="23007" checksum="1E02E1E9E400A4CB" modified="2008-05-20" version="1">MHKVAVLKFPGTNGDYDVLRALELAGLRGEIVWYRDYAAGRYDAVVLAGGFSYGDYLRAGAIAAQTEAMEHLRRDAEGGTPVLGICNGFQILVETGLLPGALAPNEPPGFISRWIQVAVVDVKTPFTHLYEPGEVVYMPIAHGEGRYIPSGPYTQAFRYVENPNGSHDATAGVSKGNVLGLMPHPERAVDRDISRGGVGGLKLWLSLKSWLKG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBN0</accession>
    <name>HEM1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glutamyl-tRNA reductase</fullName>
            <shortName evidence="1">GluTR</shortName>
            <ecNumber evidence="1">1.2.1.70</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hemA</name>
        <name type="ordered locus">Tneu_1917</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(S)-4-amino-5-oxopentanoate + tRNA(Glu) + NADP(+) = L-glutamyl-tRNA(Glu) + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12344"/>
            <dbReference type="Rhea" id="RHEA-COMP:9663"/>
            <dbReference type="Rhea" id="RHEA-COMP:9680"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57501"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="EC" id="1.2.1.70"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="domain">
        <text evidence="1">Possesses an unusual extended V-shaped dimeric structure with each monomer consisting of three distinct domains arranged along a curved 'spinal' alpha-helix. The N-terminal catalytic domain specifically recognizes the glutamate moiety of the substrate. The second domain is the NADPH-binding domain, and the third C-terminal domain is responsible for dimerization.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="1">During catalysis, the active site Cys acts as a nucleophile attacking the alpha-carbonyl group of tRNA-bound glutamate with the formation of a thioester intermediate between enzyme and glutamate, and the concomitant release of tRNA(Glu). The thioester intermediate is finally reduced by direct hydride transfer from NADPH, to form the product GSA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glutamyl-tRNA reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.70" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351251.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBN0"/>
    <dbReference type="SMR" id="B1YBN0"/>
    <dbReference type="STRING" id="444157.Tneu_1917"/>
    <dbReference type="GeneID" id="6164814"/>
    <dbReference type="KEGG" id="tne:Tneu_1917"/>
    <dbReference type="eggNOG" id="arCOG01036">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035113_0_0_2"/>
    <dbReference type="OrthoDB" id="4562at2157"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00316"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008883">
        <property type="term" value="F:glutamyl-tRNA reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019353">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process from glutamate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.30">
        <property type="entry name" value="Glutamyl-tRNA reductase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00087">
        <property type="entry name" value="Glu_tRNA_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000343">
        <property type="entry name" value="4pyrrol_synth_GluRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015895">
        <property type="entry name" value="4pyrrol_synth_GluRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018214">
        <property type="entry name" value="GluRdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036453">
        <property type="entry name" value="GluRdtase_dimer_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036343">
        <property type="entry name" value="GluRdtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006151">
        <property type="entry name" value="Shikm_DH/Glu-tRNA_Rdtase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43013">
        <property type="entry name" value="GLUTAMYL-TRNA REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43013:SF1">
        <property type="entry name" value="GLUTAMYL-TRNA REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05201">
        <property type="entry name" value="GlutR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01488">
        <property type="entry name" value="Shikimate_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000445">
        <property type="entry name" value="4pyrrol_synth_GluRdtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69742">
        <property type="entry name" value="Glutamyl tRNA-reductase catalytic, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69075">
        <property type="entry name" value="Glutamyl tRNA-reductase dimerization domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00747">
        <property type="entry name" value="GLUTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0521">NADP</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000093175" description="Glutamyl-tRNA reductase">
        <location>
            <begin position="1"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="47"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="103"/>
            <end position="105"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="177"/>
            <end position="182"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for activity" evidence="1">
        <location>
            <position position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00087"/>
        </source>
    </evidence>
    <sequence length="393" mass="42756" checksum="27D03C3CC36DF232" modified="2008-05-20" version="1">MDLLAPLSAVVLTYREVSAEALGKVGQEMKRCIERRARAFPMYVLHTCSRVEAYLYGAPPEEVQEVAEAYRRYVDSVRVITGAEAARHLFRVAAGLDSILIGETDVLGQVEEAFDRQVRAGYTRGLLKTVVERAVRVGKRVRTETAISRGPRGLGSLSIIYVSRLLDLRQAKAAVLGAGAVGSGLAMELASRGVGKLYILNRTFEKAREVAAKTGGEARPLTREEVERCLRECDVVFSSVHSMEYVIDRVPEGASVKIVVDLGVPQTVAPGLPVKVVRIEDLRQVAEQYNAERAAEVAKAEAIVEEELAALPRLLARRYVEETVAALLETAMTAAEEEGARAGCDAAALAAKTTVKRVLLPLVEKMKKMAEDGQMEEAVRLANVLTQAVGRKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBP7</accession>
    <name>B1YBP7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metal dependent phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1934</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351268.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBP7"/>
    <dbReference type="STRING" id="444157.Tneu_1934"/>
    <dbReference type="GeneID" id="6164996"/>
    <dbReference type="KEGG" id="tne:Tneu_1934"/>
    <dbReference type="eggNOG" id="arCOG04430">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026821_0_0_2"/>
    <dbReference type="OrthoDB" id="8895at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008832">
        <property type="term" value="F:dGTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006203">
        <property type="term" value="P:dGTP catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3210.10">
        <property type="entry name" value="Hypothetical protein af1432"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050135">
        <property type="entry name" value="dGTPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11373">
        <property type="entry name" value="DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11373:SF4">
        <property type="entry name" value="DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE SAMHD1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109604">
        <property type="entry name" value="HD-domain/PDEase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="1">
        <location>
            <begin position="54"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="473" mass="53734" checksum="483D54F6DBDDB570" modified="2008-05-20" version="1">MQYRKAIRDPIHGFIKLTEEEVKLIDGEPLIQRLRYVKQLGFVYLVYPTATHTRFDHSLGVMHIATLIGERILQQLGSLDEEALRHLRVAALLHDIGHLPFSHSFEVLTRELLHMAAKRGCVDVDLALFDVGKPHEVTTRLLLEKLGPRLSELGYSPELVKELLFEGGGRYAPLGVILSGVLDADRLDYIMRDMYFTGAAVGTSFTHIDLERVIENLEVVGGRLQFNEKARVNLEGYLITRYNLYRHVYLHHKTVLFTEIARNILADNIARCSDGGGDGAVCQYLCDLAKFVAGQAEGEVVWKATDDYFVSVFSRDPRFRDLLSRRPPQYVALWKREKDFIEVFRDPARINEVVDRLGPLHWALVDRLRKKLVERLNVELGGGCGLSYEDVIISYVSFDPYAEDLYISTAMGPIAISKISPLVEAVNEAWRRAPHVFLYVRKEALERCGGEALESLKSFLEPLMELAVRRISA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBR0</accession>
    <name>B1YBR0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Sulfite reductase, dissimilatory-type alpha subunit</fullName>
            <ecNumber evidence="8">1.8.99.5</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0344</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.8.99.5" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349715.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBR0"/>
    <dbReference type="STRING" id="444157.Tneu_0344"/>
    <dbReference type="GeneID" id="6165355"/>
    <dbReference type="KEGG" id="tne:Tneu_0344"/>
    <dbReference type="eggNOG" id="arCOG02057">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_660112_0_0_2"/>
    <dbReference type="OrthoDB" id="15347at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018551">
        <property type="term" value="F:dissimilatory sulfite reductase (NADH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2500">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="entry name" value="Sulfite Reductase Hemoprotein, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011806">
        <property type="entry name" value="DsrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051329">
        <property type="entry name" value="NIR_SIR_4Fe-4S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036136">
        <property type="entry name" value="Nit/Sulf_reduc_fer-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006067">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006066">
        <property type="entry name" value="NO2/SO3_Rdtase_FeS/sirohaem_BS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02064">
        <property type="entry name" value="dsrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32439:SF9">
        <property type="entry name" value="BLR3264 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32439">
        <property type="entry name" value="FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01077">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00397">
        <property type="entry name" value="SIROHAEM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="Nitrite and sulphite reductase 4Fe-4S domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55124">
        <property type="entry name" value="Nitrite/Sulfite reductase N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00365">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitrite/sulphite reductase 4Fe-4S" evidence="7">
        <location>
            <begin position="154"/>
            <end position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="412" mass="45843" checksum="6EF8A0CF3C0307B1" modified="2008-05-20" version="1">MAAPPNLPPPDKLLEMAEQYLKELEKGPWPSHVAEIRKTGYPLHVYGVGLVARKSPWGPSAVKAKRLTGVLARIARDWVPKGGEEVHFRVFHTPGRFLPTSYLRGIIKVAREYGIGLVEVVGQTGAMVINVRSKEVGDAMIEALRQVGTDVGGSGDAIRELNTCVGPALCEFALYDTLKWFTEFRKDKKIHDAIAVPGFPYKFKIKFSGCPMDCGRANRADLGFIGTWKGAPEVDQELLRKKIEAGEVDPNDLVSKCAGGAISWDAEKKELKIDGSRCKKCMYCIRKAYPAIKPGKERRVAVVVGGGSKGRYGPKLGWFVGYLKPDEVQKGIELVFKVIEPWDKEAQAKVRVGDYILMTGLYQFIEKTGIQLEDTPKLVEKLPDNVPYRVLPEEERKKYAQFAEELRRAVGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBS2</accession>
    <name>B1YBS2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CRISPR-associated protein Cas6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0356</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349726.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBS2"/>
    <dbReference type="GeneID" id="6164956"/>
    <dbReference type="KEGG" id="tne:Tneu_0356"/>
    <dbReference type="eggNOG" id="arCOG01437">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1122658_0_0_2"/>
    <dbReference type="OrthoDB" id="26519at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1900">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019267">
        <property type="entry name" value="CRISPR-assoc_Cas6_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10040">
        <property type="entry name" value="CRISPR_Cas6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRISPR-associated protein Cas6 C-terminal" evidence="1">
        <location>
            <begin position="130"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="246" mass="26659" checksum="55F93690B9514A89" modified="2008-05-20" version="1">MVVAVSVKARVASPCLLTGWSGSLVYNFFLTAIRRSAEPKGRVYAHPLYYGGAPVLSGLNGSQRAFEPGAAFELRALLSDHDARLLLDSLAAEPRVEAGCVFEAVGVDIAPADGKLEEGHGMAAVDVAFYPTAFMFHGRDVLYPSPQRLAYSLAKTYRQLYGVDLKELADRAPTALELVGMRVRTGWLNIGEARKVPVFHGRARLAIYGDVGKWLSLLKLGELTGVGISRAIGLGKYRIEKVEILI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="92" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBV4</accession>
    <name>B1YBV4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0390</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349758.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBV4"/>
    <dbReference type="STRING" id="444157.Tneu_0390"/>
    <dbReference type="GeneID" id="6164896"/>
    <dbReference type="KEGG" id="tne:Tneu_0390"/>
    <dbReference type="eggNOG" id="arCOG00198">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_11_2"/>
    <dbReference type="OrthoDB" id="24644at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03214">
        <property type="entry name" value="ABC_Iron-Siderophores_B12_Hemin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000134">
        <property type="entry name" value="Iron-enterobactin ABC transporter ATP-binding protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050153">
        <property type="entry name" value="Metal_Ion_Import_ABC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42734:SF20">
        <property type="entry name" value="ABC-TYPE IRON(III)-SIDEROPHORE TRANSPORT SYSTEM, ATPASE COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42734">
        <property type="entry name" value="METAL TRANSPORT SYSTEM ATP-BINDING PROTEIN TM_0124-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="4"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="250" mass="27987" checksum="1836C72359FF2BFC" modified="2008-05-20" version="1">MVSIRIEGVEFSYPSRQALRGVTVEIPPRSFTAVLGPNGAGKSTLMKIMASVLKPRRGAVYFDGRIPRREELYRTVGYVPQRAAPGGRLRVIDLVVSSRKPYFRFFPTAGDYRAAEEALKRVGVSHLRDRFLEELSGGEFQLVLLARALAVEPRVLLLDEPFNNLDLRHQLEVASLLRKLSSDVTVVAVLHDLNMALRYADYAIFMSRGEVYAAGPTKAVFREDVIYDVYGVKTKILWEIPAVIPQQPPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBX5</accession>
    <name>B1YBX5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, CopG family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0411</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349779.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBX5"/>
    <dbReference type="STRING" id="444157.Tneu_0411"/>
    <dbReference type="GeneID" id="6166195"/>
    <dbReference type="KEGG" id="tne:Tneu_0411"/>
    <dbReference type="eggNOG" id="arCOG01008">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_113319_1_2_2"/>
    <dbReference type="OrthoDB" id="25654at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd22231">
        <property type="entry name" value="RHH_NikR_HicB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1150">
        <property type="entry name" value="ACT-like. Chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="entry name" value="Met repressor-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027271">
        <property type="entry name" value="Acetolactate_synth/TF_NikR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050192">
        <property type="entry name" value="CopG/NikR_regulator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014864">
        <property type="entry name" value="TF_NikR_Ni-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34719">
        <property type="entry name" value="NICKEL-RESPONSIVE REGULATOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34719:SF2">
        <property type="entry name" value="NICKEL-RESPONSIVE REGULATOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08753">
        <property type="entry name" value="NikR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="ACT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transcription factor NikR nickel binding C-terminal" evidence="1">
        <location>
            <begin position="52"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="132" mass="15014" checksum="ED87E670457A5810" modified="2008-05-20" version="1">MVKRISIVLDDDLYKEMERLMTELGEVNRSRFIASVIAEKIGEASKTPVASLVVIVYDHEVGDVAKHLTEVQHDFNDVIRVTTHVHLDERNCMEVIHAVGEGQRIRELTSRISRIGRGIRFLKVINVPKEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBX7</accession>
    <name>B1YBX7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0413</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349781.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBX7"/>
    <dbReference type="STRING" id="444157.Tneu_0413"/>
    <dbReference type="GeneID" id="6166177"/>
    <dbReference type="KEGG" id="tne:Tneu_0413"/>
    <dbReference type="eggNOG" id="arCOG00585">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024839_3_0_2"/>
    <dbReference type="OrthoDB" id="85513at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044304">
        <property type="entry name" value="NUBPL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033756">
        <property type="entry name" value="YlxH/NBP35"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42961">
        <property type="entry name" value="IRON-SULFUR PROTEIN NUBPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42961:SF2">
        <property type="entry name" value="IRON-SULFUR PROTEIN NUBPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10609">
        <property type="entry name" value="ParA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="241" mass="25606" checksum="6D4EC96976E7EFD6" modified="2008-05-20" version="1">MRPLLERARDNLRGREVVAVMSGKGGVGKSTVAALLAVGRGNTALVDLDIFGMSTPRLFGVVGRLHEVEKEGIRPFEVGGVKLFSLGGVVGDRYVVLPGANEGGVVEAILAFADLRGVDRVVVDMPPGMGEALLALERVARFKPVLVSTPSAMSVKVVSHLAEYLVERGAKPAALVLNMAYVECGGGRVYPFGRGDDARRLAERLGAALVELPIDPELESYVGRIGEYRGPAYRELLKAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBY6</accession>
    <name>B1YBY6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Vinylacetyl-CoA Delta-isomerase</fullName>
            <ecNumber evidence="7">5.3.3.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0422</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EC" id="5.3.3.3" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349790.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBY6"/>
    <dbReference type="STRING" id="444157.Tneu_0422"/>
    <dbReference type="GeneID" id="6166015"/>
    <dbReference type="KEGG" id="tne:Tneu_0422"/>
    <dbReference type="eggNOG" id="arCOG02143">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023920_1_0_2"/>
    <dbReference type="OrthoDB" id="32865at2157"/>
    <dbReference type="BRENDA" id="4.2.1.120">
        <property type="organism ID" value="6328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050393">
        <property type="term" value="F:vinylacetyl-CoA delta-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3140.10">
        <property type="entry name" value="4-hydroxybutyryl-coa dehydratase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="entry name" value="Butyryl-CoA Dehydrogenase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.140.10">
        <property type="entry name" value="Butyryl-CoA Dehydrogenase, subunit A, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004925">
        <property type="entry name" value="HpaB/PvcC/4-BUDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024719">
        <property type="entry name" value="HpaB/PvcC/4-BUDH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024674">
        <property type="entry name" value="HpaB/PvcC/4-BUDH_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36117">
        <property type="entry name" value="4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36117:SF3">
        <property type="entry name" value="4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03241">
        <property type="entry name" value="HpaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11794">
        <property type="entry name" value="HpaB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000331">
        <property type="entry name" value="HpaA_HpaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="Acyl-CoA dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="Acyl-CoA dehydrogenase NM domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HpaB/PvcC/4-BUDH N-terminal" evidence="6">
        <location>
            <begin position="5"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="HpaB/PvcC/4-BUDH C-terminal" evidence="5">
        <location>
            <begin position="281"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="476"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="488"/>
            <end position="497"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF11794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="497" mass="55551" checksum="5F873B1D76CE2450" modified="2008-05-20" version="1">MGLRTGDQYVEGLRNRKHVKVYVMGKRVEDVTTNLFMKPSLLSFKATFDAAFQEDTRDLARAYSPFINEEINRFVHIHQGPQDLVAKVKLLRALSHKTGSCFQRCVGWDGLNTMYIITGKLAEKGKPVYRERFLKYLEEVQRRDLALAGAMTDARGVRSLRPHEQPNPDAYVRVVEERDDGIIVRGAKANITGVALVDEVIVMPTRAMTEKDAPYAVAFAVPLDSPGVTVVVGRQINDVRKAEGDIDGLPYMSHHEGLIIFEDVFVPWDRVFLYQEWQWAGPLVEVFSAFHRQGYAGCKSGLGDVIIGAAYNLAKQIGVADKPNIVDKLTEMVFLNESMYSAGLAASWEGKKLLKDGGWWVNPMYANVTKHLVSRFPYEISRLSHDIAGGIIGTAPSEFDLKNSEIRQLVEKYLQGVPEFTAEDRLRMLRLLENVSVSVGFLIESVHGAGSPAAQKIVFSRLYDFQGAEAVAKRLARMRGPEPPGTPEPHKKSDVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC11</accession>
    <name>B1YC11_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF2070 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1950</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351284.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC11"/>
    <dbReference type="STRING" id="444157.Tneu_1950"/>
    <dbReference type="GeneID" id="6164474"/>
    <dbReference type="KEGG" id="tne:Tneu_1950"/>
    <dbReference type="eggNOG" id="arCOG04351">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_507747_0_0_2"/>
    <dbReference type="OrthoDB" id="8914at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019204">
        <property type="entry name" value="DUF2070_membrane"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09843">
        <property type="entry name" value="DUF2070"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="516"/>
            <end position="535"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2070" evidence="2">
        <location>
            <begin position="4"/>
            <end position="531"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="536" mass="57520" checksum="BF8C146997553429" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC46</accession>
    <name>FEN_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Flap endonuclease 1</fullName>
            <shortName evidence="2">FEN-1</shortName>
            <ecNumber evidence="2">3.1.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Flap structure-specific endonuclease 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">fen</name>
        <name type="ordered locus">Tneu_1985</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathway. Acts as a genome stabilization factor that prevents flaps from equilibrating into structures that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="2">Binds 2 magnesium ions per subunit. They probably participate in the reaction catalyzed by the enzyme. May bind an additional third magnesium ion after substrate binding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Interacts with PCNA. PCNA stimulates the nuclease activity without altering cleavage specificity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the XPG/RAD2 endonuclease family. FEN1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351319.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC46"/>
    <dbReference type="SMR" id="B1YC46"/>
    <dbReference type="STRING" id="444157.Tneu_1985"/>
    <dbReference type="GeneID" id="6165667"/>
    <dbReference type="KEGG" id="tne:Tneu_1985"/>
    <dbReference type="eggNOG" id="arCOG04050">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032444_0_0_2"/>
    <dbReference type="OrthoDB" id="9593at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008409">
        <property type="term" value="F:5'-3' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017108">
        <property type="term" value="F:5'-flap endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043137">
        <property type="term" value="P:DNA replication, removal of RNA primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09867">
        <property type="entry name" value="PIN_FEN1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.150.20:FF:000087">
        <property type="entry name" value="Flap endonuclease 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1010:FF:000016">
        <property type="entry name" value="Flap endonuclease 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1010">
        <property type="entry name" value="5'-nuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00614">
        <property type="entry name" value="Fen"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036279">
        <property type="entry name" value="5-3_exonuclease_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023426">
        <property type="entry name" value="Flap_endonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019973">
        <property type="entry name" value="Flap_endonuc_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008918">
        <property type="entry name" value="HhH2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006086">
        <property type="entry name" value="XPG-I_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006084">
        <property type="entry name" value="XPG/Rad2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019974">
        <property type="entry name" value="XPG_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006085">
        <property type="entry name" value="XPG_DNA_repair_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03674">
        <property type="entry name" value="fen_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11081:SF9">
        <property type="entry name" value="FLAP ENDONUCLEASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11081">
        <property type="entry name" value="FLAP ENDONUCLEASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00867">
        <property type="entry name" value="XPG_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00752">
        <property type="entry name" value="XPG_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00853">
        <property type="entry name" value="XPGRADSUPER"/>
    </dbReference>
    <dbReference type="SMART" id="SM00279">
        <property type="entry name" value="HhH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00484">
        <property type="entry name" value="XPGI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00485">
        <property type="entry name" value="XPGN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47807">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="PIN domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00841">
        <property type="entry name" value="XPG_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0227">DNA damage</keyword>
    <keyword id="KW-0234">DNA repair</keyword>
    <keyword id="KW-0235">DNA replication</keyword>
    <keyword id="KW-0255">Endonuclease</keyword>
    <keyword id="KW-0269">Exonuclease</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0540">Nuclease</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000130405" description="Flap endonuclease 1">
        <location>
            <begin position="1"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="region of interest" description="N-domain">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="I-domain">
        <location>
            <begin position="120"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="158"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000250" key="1"/>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00614"/>
        </source>
    </evidence>
    <sequence length="349" mass="39152" checksum="2250BF8FE3A46E30" modified="2008-05-20" version="1">MGVTELGKLIGREARREIKLENLAGRCIALDAYNALYQFLASIRQPDGTPLMDRQGRVTSHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEARRRVKEKAMEEVVKAIREGKRDDVAKYMKRVIFLTNEMVEDAKRLLTYMGVPWVQAPSEGEAQAAHMAKRGHCWAVGSQDYDSLLFGSPRLVRNLAVSPKRRSGEEVVEVSPEVVELDSVLKALKLKGREQLIDVAILLGTDYNPDGVPGVGPQKALKLVLEFGSLEKMLDTVLRGVSFPVDPLEIKRFFLNPPVTEEYALELKNVDERGLVNFLVGEHDFSEERVAKAVERLKKARARQKTSSLDSFFHGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC80</accession>
    <name>B1YC80_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0446</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349813.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC80"/>
    <dbReference type="STRING" id="444157.Tneu_0446"/>
    <dbReference type="GeneID" id="6166070"/>
    <dbReference type="KEGG" id="tne:Tneu_0446"/>
    <dbReference type="eggNOG" id="arCOG00503">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036012_0_0_2"/>
    <dbReference type="OrthoDB" id="7773at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd07713">
        <property type="entry name" value="DHPS-like_MBL-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041712">
        <property type="entry name" value="DHPS-like_MBL-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052926">
        <property type="entry name" value="Metallo-beta-lactamase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13754">
        <property type="entry name" value="METALLO-BETA-LACTAMASE SUPERFAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13754:SF13">
        <property type="entry name" value="METALLO-BETA-LACTAMASE SUPERFAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_3G07630)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallo-beta-lactamase" evidence="1">
        <location>
            <begin position="35"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="267" mass="28862" checksum="D6EF5D61F5A7C2B1" modified="2008-05-20" version="1">MRVTILVDNYLTDVKSIRHRLRGEWGFAAYLHDLKILYDTGLSGDVLLHNMRELGIDPDEPDVLVLSHRHSDHTGGVLAFLKARRRPITVYAHRLIFERAAVRDSKGEVDISAPFDLPFLQRHGARLVAVEEPREILPGVYVSGEIPRRWGPSHVGGVSDLVRDDMALYISSGGLVALTGCGHSGVENIVEYGLQVTGAKRLRGVVGGLHFMGLQGDRVAEAARYLASKGPELVVGTHCTGVMGVAKLAEALGPAARVGGVGVEIDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCA5</accession>
    <name>B1YCA5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATPase AAA-type core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0471</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349838.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCA5"/>
    <dbReference type="STRING" id="444157.Tneu_0471"/>
    <dbReference type="GeneID" id="6166097"/>
    <dbReference type="KEGG" id="tne:Tneu_0471"/>
    <dbReference type="eggNOG" id="arCOG03233">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_489696_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13304">
        <property type="entry name" value="AAA_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase AAA-type core" evidence="1">
        <location>
            <begin position="385"/>
            <end position="441"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="533" mass="58146" checksum="87EFA9C84D27C2BA" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCE0</accession>
    <name>B1YCE0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0510</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349873.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCE0"/>
    <dbReference type="STRING" id="444157.Tneu_0510"/>
    <dbReference type="GeneID" id="6165823"/>
    <dbReference type="KEGG" id="tne:Tneu_0510"/>
    <dbReference type="eggNOG" id="arCOG02050">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045498_5_0_2"/>
    <dbReference type="OrthoDB" id="12267at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051598">
        <property type="entry name" value="TSUP/Inactive_protease-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43701">
        <property type="entry name" value="MEMBRANE TRANSPORTER PROTEIN MJ0441-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43701:SF2">
        <property type="entry name" value="MEMBRANE TRANSPORTER PROTEIN YJNA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="51"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="85"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="110"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="147"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="209"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="234"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="256" mass="25182" checksum="18D452A85B68890F" modified="2008-05-20" version="1">MWPAWLYAASAISGAAVGFVLGVIGGGGSILAIPLLLYFAGLATLTDLNTAVHLAVGSTALAVGANALANFLMHWRRGNVSPRGAAVFSAAGVPAAWAGAWLGKATRGEVLLAALGAAMVALSIWVLKRRAAGGRQLNLAKAGAGGAAVGFLSGFLGIGGGFLVAPALMWAGLDVKRAVGTSLAAVAAFGLTTAAEYATSGYLDPLISLAYLAGGVAGGAAGVAVAAKTPREKIAIAYAAVLAAVGIYTIIKALKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCE5</accession>
    <name>B1YCE5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Nucleotide-diphospho-sugar transferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0515</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349878.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCE5"/>
    <dbReference type="STRING" id="444157.Tneu_0515"/>
    <dbReference type="GeneID" id="6165892"/>
    <dbReference type="KEGG" id="tne:Tneu_0515"/>
    <dbReference type="eggNOG" id="arCOG06064">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_982191_0_0_2"/>
    <dbReference type="OrthoDB" id="27741at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="260" mass="30213" checksum="BC11B2D8419B6312" modified="2008-05-20" version="1">MILATYLPLFRIHELEIFDRNHREIKPDEVAICVDYYHTERQMPIVEMYTSRYSPHLILGNWRNRTSCLLRLVDYIQRRGGDGLIVDSDVYIPNFHQLDKALDLPFYHIAEGPWGGPRVRCEKRGQLEVCYWRVRALWARTMQVFAGPKQAIRYRERLNLDVEPVLKTIEAMDPLYAAPLADETTLGIVYDKAGIREVPFVVAAKHDRHRSDPASTSPKLYGELRAKALWRLFKSTGYAPPAARYLVTSLYYSILTVFKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCI2</accession>
    <name>B1YCI2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Phosphate transport system permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0552</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cell membrane</location>
            <topology evidence="1 9">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349915.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCI2"/>
    <dbReference type="STRING" id="444157.Tneu_0552"/>
    <dbReference type="GeneID" id="6166153"/>
    <dbReference type="KEGG" id="tne:Tneu_0552"/>
    <dbReference type="eggNOG" id="arCOG00167">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033621_1_3_2"/>
    <dbReference type="OrthoDB" id="338493at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011864">
        <property type="entry name" value="Phosphate_PstC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051124">
        <property type="entry name" value="Phosphate_Transport_Permease"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02138">
        <property type="entry name" value="phosphate_pstC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30425">
        <property type="entry name" value="PHOSPHATE TRANSPORT SYSTEM PERMEASE PROTEIN PST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30425:SF1">
        <property type="entry name" value="PHOSPHATE TRANSPORT SYSTEM PERMEASE PROTEIN PSTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 10" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="75"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="118"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="162"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="219"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="248"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="280"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="11">
        <location>
            <begin position="81"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="307" mass="32279" checksum="8E8738DB74B002F9" modified="2008-05-20" version="1">MLGFVLAVLVFPYLAAAFALLFLKMRWGLRAFGVFALVAVALLIAMFLAYAYPILEREGLAVFTSAVWDPAREEYGVLPALVGTLVTSAVAISLAFPMAVGVAVTINEVLPPRLRPLFASLVDLTATMPTVLYGLWGIFALGPLLQSAVNAVFGPGAMPSQYSLLTAGVLLAVMVTPYAAAVIREGYAAVPRPVEEAVYSLGATRLETVLVKLRHIRNYVVGGIFLALGRAMGETVAVAMVVGGKLGSLPAGLFDGGITISSLIALQFPNAAAYKYMTAALFAGALALAVLGIAINAAALYLIRRWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCN2</accession>
    <name>B1YCN2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP10</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0606</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349965.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCN2"/>
    <dbReference type="STRING" id="444157.Tneu_0606"/>
    <dbReference type="GeneID" id="58787330"/>
    <dbReference type="KEGG" id="tne:Tneu_0606"/>
    <dbReference type="eggNOG" id="arCOG00746">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_181231_1_0_2"/>
    <dbReference type="OrthoDB" id="27735at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="54" mass="5694" checksum="EC501A951C164E88" modified="2008-05-20" version="1">MPSVRDVLGVSAVSLMRYGVRPEDDVYTAISLLERRAPHLAKLLKAVAGVGGAS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-07-22" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCQ5</accession>
    <name>CREN7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chromatin protein Cren7</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">creN7</name>
        <name type="ordered locus">Tneu_0629</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">A chromatin protein, binds double-stranded DNA without sequence specificity. Constrains negative DNA supercoils.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Chromosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="1">Methylated at multiple sites, to varying extents.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the Cren7 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349988.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCQ5"/>
    <dbReference type="SMR" id="B1YCQ5"/>
    <dbReference type="STRING" id="444157.Tneu_0629"/>
    <dbReference type="GeneID" id="6166258"/>
    <dbReference type="KEGG" id="tne:Tneu_0629"/>
    <dbReference type="eggNOG" id="arCOG04114">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_192664_0_0_2"/>
    <dbReference type="OrthoDB" id="38142at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.610">
        <property type="entry name" value="Chromatin protein Cren7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01387">
        <property type="entry name" value="Chromatin_Cren7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038647">
        <property type="entry name" value="Cren7_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020906">
        <property type="entry name" value="dsDNA-bd_Cren7"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11520">
        <property type="entry name" value="Cren7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0158">Chromosome</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0238">DNA-binding</keyword>
    <keyword id="KW-0488">Methylation</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000345180" description="Chromatin protein Cren7">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01387"/>
        </source>
    </evidence>
    <sequence length="59" mass="6822" checksum="F1FE07AA838D4227" modified="2008-05-20" version="1">MAEEILNREYEVEYGGKRYWLRPSKAWVLQPPGKPGVVIALFKLPDGRTVRKAIMRLPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCS5</accession>
    <name>B1YCS5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">KaiC-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0649</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350008.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCS5"/>
    <dbReference type="STRING" id="444157.Tneu_0649"/>
    <dbReference type="GeneID" id="6165247"/>
    <dbReference type="KEGG" id="tne:Tneu_0649"/>
    <dbReference type="eggNOG" id="arCOG01174">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_820438_0_0_2"/>
    <dbReference type="OrthoDB" id="26639at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014774">
        <property type="entry name" value="KaiC-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637:SF2">
        <property type="entry name" value="PROTEIN GVPD 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637">
        <property type="entry name" value="UPF0273 PROTEIN TM_0370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06745">
        <property type="entry name" value="ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KaiC-like" evidence="3">
        <location>
            <begin position="9"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF06745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="338" mass="38650" checksum="1E59F074B2A62E6C" modified="2008-05-20" version="1">MDLRRVFAERVSFVYGASGSGKTVLVSKVAFDFAKEGRRVVWVTFNEGKDTLYETWKSFGWRAEDVVVFDYPFVPQYRETLFNQVVDLAYKERADVFVVDGIEAIVFDRASADALTKIGLYSVIGIEAKYNPLADIADVIVKMEARYTDHGTIRRIKIEKARGIEVLKPIYYLAILPTGPVVLTNEFTPTAEVRTVPPPGLLGHLVREIPLGAQIAVYGPHQRLTAAVVDSLNAVAYVHKPHQLGYFKKARPRLVSLAEHRRLEHYAQKVVSTYVITLDAEEVPRWFRKFREPRHVWIDVYTSVPDLTGYDYVFYVDVEKIRVERSPDPVTQQEIRLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCV8</accession>
    <name>B1YCV8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Putative HTH-type transcriptional regulatory protein Tneu_0682</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0682</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350041.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCV8"/>
    <dbReference type="STRING" id="444157.Tneu_0682"/>
    <dbReference type="GeneID" id="6165408"/>
    <dbReference type="KEGG" id="tne:Tneu_0682"/>
    <dbReference type="eggNOG" id="arCOG04152">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1113915_0_0_2"/>
    <dbReference type="OrthoDB" id="31424at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="entry name" value="lambda repressor-like DNA-binding domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00584">
        <property type="entry name" value="HTH_type_cro_C1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020886">
        <property type="entry name" value="MTH_967-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR059051">
        <property type="entry name" value="MTH_967_PDDEXK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF26553">
        <property type="entry name" value="PDDEXK_19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="lambda repressor-like DNA-binding domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0804">Transcription</keyword>
    <keyword evidence="1 4" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="5">
        <location>
            <begin position="128"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="249" mass="27559" checksum="0154BB8773970E8B" modified="2008-05-20" version="1">MEKLLEATLNIVRNMGEELFIDTSRPYAYTLVAKFGSKKYIMRVASDADQIPTSAVRDLKILSAHTDATSVCLVSGVRGQILQRGVVYVKDNVVFLSLSTFTDALGGRLPAFKLGRGSVTAVINGEELRRRREGAGLSLGALAAELGVTRETVYRYERGEIEAPLRVAQKLISMFGEEVVKKFDVEGKPKIEPEELKSREEGRGTYKLLESHPDAVKVEDGVVFISRDRERYRKTVELAYALGADVETA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCW2</accession>
    <name>B1YCW2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA methylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0686</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350045.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCW2"/>
    <dbReference type="STRING" id="444157.Tneu_0686"/>
    <dbReference type="GeneID" id="6166165"/>
    <dbReference type="KEGG" id="tne:Tneu_0686"/>
    <dbReference type="eggNOG" id="arCOG00047">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_106568_0_0_2"/>
    <dbReference type="OrthoDB" id="7080at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016423">
        <property type="term" value="F:tRNA (guanine) methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030488">
        <property type="term" value="P:tRNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000241">
        <property type="entry name" value="RlmKL-like_Mtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14911">
        <property type="entry name" value="THUMP DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14911:SF13">
        <property type="entry name" value="TRNA (GUANINE(6)-N2)-METHYLTRANSFERASE THUMP3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01170">
        <property type="entry name" value="UPF0020"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00507">
        <property type="entry name" value="N12N6MTFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Ribosomal RNA large subunit methyltransferase K/L-like methyltransferase" evidence="1">
        <location>
            <begin position="80"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="224" mass="24456" checksum="949EE0532B9A112E" modified="2008-05-20" version="1">MICRVELSRRYPCLAREEALALGELGGCTPVELRDGSATFICGSCEIFARGALIKSVNGIKVKREAPAIRRSVKTLDHITARLMVNLARVKPGHRVWEPFVGTGAIAYEVERAGGYVVGGDVDEKALKIAKLNIRGDVVLSDVLLPPVSKFDAVVGDPPYGRLTASAMDVRPLLNVFLEVARSHVEKGGYLVFASPVYIDMPLLRSCAMYLHGGLYRVIYIERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCY8</accession>
    <name>B1YCY8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0712</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCY8"/>
    <dbReference type="KEGG" id="tne:Tneu_0712"/>
    <dbReference type="eggNOG" id="arCOG05531">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1881158_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="131" mass="15168" checksum="22D40FAF587E07B4" modified="2008-05-20" version="1">MGREKIKIVIKIYKNKFDKNRKYIVLKNDKYNISLIKSIPSRRAGKYVESLKKSWMRVRIERVEPGRVKIREEISGSGWLYFPSHRLAIGVVFLGSWGVLAASSIPSREPYFLPIGGKPPRLLGVRTIDFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="95" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCY9</accession>
    <name>B1YCY9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">Citrate synthase</fullName>
            <ecNumber evidence="6">2.3.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0713</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>oxaloacetate + acetyl-CoA + H2O = citrate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16845"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:16947"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.3.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate metabolism; tricarboxylic acid cycle.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6 8">Belongs to the citrate synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.16" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350072.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCY9"/>
    <dbReference type="STRING" id="444157.Tneu_0713"/>
    <dbReference type="GeneID" id="6165432"/>
    <dbReference type="KEGG" id="tne:Tneu_0713"/>
    <dbReference type="eggNOG" id="arCOG04237">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025068_2_1_2"/>
    <dbReference type="UniPathway" id="UPA00223"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036440">
        <property type="term" value="F:citrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd06118">
        <property type="entry name" value="citrate_synt_like_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.580.10">
        <property type="entry name" value="Citrate Synthase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.230.10">
        <property type="entry name" value="Cytochrome P450-Terp, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011278">
        <property type="entry name" value="2-MeCitrate/Citrate_synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016142">
        <property type="entry name" value="Citrate_synth-like_lrg_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016143">
        <property type="entry name" value="Citrate_synth-like_sm_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002020">
        <property type="entry name" value="Citrate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019810">
        <property type="entry name" value="Citrate_synthase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024176">
        <property type="entry name" value="Citrate_synthase_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036969">
        <property type="entry name" value="Citrate_synthase_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01800">
        <property type="entry name" value="cit_synth_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11739">
        <property type="entry name" value="CITRATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11739:SF4">
        <property type="entry name" value="CITRATE SYNTHASE, PEROXISOMAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00285">
        <property type="entry name" value="Citrate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001369">
        <property type="entry name" value="Citrate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00143">
        <property type="entry name" value="CITRTSNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48256">
        <property type="entry name" value="Citrate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00480">
        <property type="entry name" value="CITRATE_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="active site" evidence="7">
        <location>
            <position position="283"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00049288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR001369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001369-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="404" mass="45535" checksum="FC2DC5C411BAFFE6" modified="2008-05-20" version="1">MQRASKRKMSSPCGEIAHGLEDVLIKTTSISDIDGERGILWYRGYRIEDLARNSTYEEVAYLLLYGKLPTRGELDEFTSRLAKNRDLNPATVEVLKNLAYAHPMFAAEAAIATEGAFDDDNRKLSESLRTGKYGDEEKALAYRIAEKLVAKMATIVAYHYRLSRGLEPVRPREDLPHAANFLYLMFGKMPERLAVRGLDLYLILHADHEVPASTLAAQVVASTLSDLYSSIAAAVAALKGPLHGGANEAVVRTYLEIGDPSRAKSIVEAATKPGGPKLMGVGHRVYKAYDPRARILKDFARDYMTKYGDRDNLFAIAVAIEQEVLSLPYFRQRRLYPNVDFWSGIVLYYLGIPYEYYTPLFAVSRVVGWVAHILEYWDNNRIFRPRACYVGPHDLKYVPINERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD01</accession>
    <name>B1YD01_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Small ribosomal subunit protein uS17</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rps17</name>
        <name evidence="8" type="ordered locus">Tneu_0725</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uS17 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350084.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD01"/>
    <dbReference type="STRING" id="444157.Tneu_0725"/>
    <dbReference type="GeneID" id="6165734"/>
    <dbReference type="KEGG" id="tne:Tneu_0725"/>
    <dbReference type="eggNOG" id="arCOG04096">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073626_0_3_2"/>
    <dbReference type="OrthoDB" id="10698at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01345_A">
        <property type="entry name" value="Ribosomal_uS17_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000266">
        <property type="entry name" value="Ribosomal_uS17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028333">
        <property type="entry name" value="Ribosomal_uS17_arc/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019978">
        <property type="entry name" value="Ribosomal_uS17_archaeal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019979">
        <property type="entry name" value="Ribosomal_uS17_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006345">
        <property type="entry name" value="PRK08572.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03630">
        <property type="entry name" value="uS17_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10744">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10744:SF9">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S11-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00366">
        <property type="entry name" value="Ribosomal_S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00973">
        <property type="entry name" value="RIBOSOMALS17"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00056">
        <property type="entry name" value="RIBOSOMAL_S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="146" mass="16966" checksum="67A01366A800C6EF" modified="2008-05-20" version="1">MTVVKLQSRPRAGDVVTLPNGKKVEVRDIGLPYVQPPLAVCDDPLCPWHGHLKIRLKLLEVTVEKVRMHKAAVVTHEWVHYIRKYNRYERRRRRIKVRVPECIEVKPGDKVIIAETRPLSKTISWVVIGKREDLIAWKAKHETLTA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD06</accession>
    <name>G3P_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyceraldehyde-3-phosphate dehydrogenase</fullName>
            <shortName evidence="1">GAPDH</shortName>
            <ecNumber evidence="1">1.2.1.59</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">gap</name>
        <name type="ordered locus">Tneu_0730</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-glyceraldehyde 3-phosphate + phosphate + NADP(+) = (2R)-3-phospho-glyceroyl phosphate + NADPH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10296"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57604"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="1.2.1.59"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-glyceraldehyde 3-phosphate + phosphate + NAD(+) = (2R)-3-phospho-glyceroyl phosphate + NADH + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10300"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57604"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="1.2.1.59"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 1/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.59" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350089.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD06"/>
    <dbReference type="SMR" id="B1YD06"/>
    <dbReference type="STRING" id="444157.Tneu_0730"/>
    <dbReference type="GeneID" id="6165513"/>
    <dbReference type="KEGG" id="tne:Tneu_0730"/>
    <dbReference type="eggNOG" id="arCOG00493">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069533_0_0_2"/>
    <dbReference type="OrthoDB" id="295712at2157"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00184"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008839">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate reductase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004365">
        <property type="term" value="F:glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047100">
        <property type="term" value="F:glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18127">
        <property type="entry name" value="GAPDH_II_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02278">
        <property type="entry name" value="GAPDH_II_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.10">
        <property type="entry name" value="Dihydrodipicolinate Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00559">
        <property type="entry name" value="G3P_dehdrog_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000846">
        <property type="entry name" value="DapB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020831">
        <property type="entry name" value="GlycerAld/Erythrose_P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020830">
        <property type="entry name" value="GlycerAld_3-P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020829">
        <property type="entry name" value="GlycerAld_3-P_DH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020828">
        <property type="entry name" value="GlycerAld_3-P_DH_NAD(P)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006436">
        <property type="entry name" value="Glyceraldehyde-3-P_DH_2_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01546">
        <property type="entry name" value="GAPDH-II_archae"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003251">
        <property type="entry name" value="PRK04207.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01113">
        <property type="entry name" value="DapB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02800">
        <property type="entry name" value="Gp_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000149">
        <property type="entry name" value="GAP_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00846">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55347">
        <property type="entry name" value="Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00071">
        <property type="entry name" value="GAPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0324">Glycolysis</keyword>
    <keyword id="KW-0520">NAD</keyword>
    <keyword id="KW-0521">NADP</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000129247" description="Glyceraldehyde-3-phosphate dehydrogenase">
        <location>
            <begin position="1"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="11"/>
            <end position="12"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="139"/>
            <end position="141"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="195"/>
            <end position="196"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00559"/>
        </source>
    </evidence>
    <sequence length="344" mass="37902" checksum="2378B8F775D14492" modified="2008-05-20" version="1">MIRVGIVGYGTIGKRIADAVVAQDDMKIAGVLKVSPDYEAKVAVSRGFPVYTLPDRVEKFKKAGIEPAGTIEDLIKASDVVVDASPEDVGRENKEKYYQRYDKPVIFQGGEEADVAEVSFNALANYEEARGKRYVRVVSCNTTGITRVLTSLTLNGVGIKKARIFIARRGADPKEHKKGPINDVVPNPATVPSHHGPDVQTILRNVDIVTMAVAVPVTIMHMHMAYIELDSAYPKDQVIEAFAKTPRIFLADVGAGFQSLAQVIEYARDLGRPRGDFPEVAVFRDSVTTHGNELYLMYGVHQESIVVPENIDAIRSIFGTLPKWRSIEKTDKSLKLTTEGKRYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD11</accession>
    <name>B1YD11_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thymidylate synthase-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0735</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350094.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD11"/>
    <dbReference type="STRING" id="444157.Tneu_0735"/>
    <dbReference type="GeneID" id="6164882"/>
    <dbReference type="KEGG" id="tne:Tneu_0735"/>
    <dbReference type="eggNOG" id="arCOG05534">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_887450_0_0_2"/>
    <dbReference type="OrthoDB" id="27255at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="307" mass="34776" checksum="355AC15B01F12609" modified="2008-05-20" version="1">MSNLLLLLLWQSPDKIGRDILDKVAFVGTAYSADAVNFVVKSLYENLNGVDTVIVYGPDLNGAGDLIIQALRGVCNEALRVPCKYVENLGVRVVDLRWSSEDRLRRAVEELYKPAASEVRPRVEIQLEVPNKRMPYQGPHILYDSDLEALRYKAVDYLLTYGLDSGDVIYGVLILQVGSTGSYLTRPCDVLQEWPCGLEKSAFLIATPAFVQKRDLEAFYTAKPEIYKRDVYDPHGNFVIADRLYHYSPRGVLLRQLELDEANLRKEAQKLLPDHAFYLGQEWAAYKILRDRYVQDRWKTAGAGGGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD23</accession>
    <name>B1YD23_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Small ribosomal subunit protein uS3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rps3</name>
        <name evidence="9" type="ordered locus">Tneu_0747</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Binds the lower part of the 30S subunit head.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the universal ribosomal protein uS3 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD23"/>
    <dbReference type="STRING" id="444157.Tneu_0747"/>
    <dbReference type="KEGG" id="tne:Tneu_0747"/>
    <dbReference type="eggNOG" id="arCOG04097">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058591_1_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02411">
        <property type="entry name" value="KH-II_30S_S3_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.300.20:FF:000001">
        <property type="entry name" value="30S ribosomal protein S3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1140.32">
        <property type="entry name" value="Ribosomal protein S3, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01309_A">
        <property type="entry name" value="Ribosomal_uS3_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004044">
        <property type="entry name" value="KH_dom_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036419">
        <property type="entry name" value="Ribosomal_S3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057258">
        <property type="entry name" value="Ribosomal_uS3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027488">
        <property type="entry name" value="Ribosomal_uS3_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001351">
        <property type="entry name" value="Ribosomal_uS3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005703">
        <property type="entry name" value="Ribosomal_uS3_euk/arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003219">
        <property type="entry name" value="PRK04191.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01008">
        <property type="entry name" value="uS3_euk_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11760">
        <property type="entry name" value="30S/40S RIBOSOMAL PROTEIN S3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11760:SF32">
        <property type="entry name" value="SMALL RIBOSOMAL SUBUNIT PROTEIN US3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07650">
        <property type="entry name" value="KH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00189">
        <property type="entry name" value="Ribosomal_S3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="Prokaryotic type KH domain (KH-domain type II)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54821">
        <property type="entry name" value="Ribosomal protein S3 C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50823">
        <property type="entry name" value="KH_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="KH type-2" evidence="8">
        <location>
            <begin position="31"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01309"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="224" mass="25439" checksum="748381E3E8F99DCC" modified="2008-05-20" version="1">MVPIVGAMSAVQRRLPVYKKILEENKKKWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGKKGAIVKEISNILMNKLGVENPQIDVIDVSKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERARFEKHTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRIAPAALQYSDEYKIKPPTKPEAAGQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD25</accession>
    <name>B1YD25_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">UbiA prenyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0749</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350108.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD25"/>
    <dbReference type="STRING" id="444157.Tneu_0749"/>
    <dbReference type="GeneID" id="6165165"/>
    <dbReference type="KEGG" id="tne:Tneu_0749"/>
    <dbReference type="eggNOG" id="arCOG00476">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073311_1_1_2"/>
    <dbReference type="OrthoDB" id="11851at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.140">
        <property type="entry name" value="UbiA prenyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1780">
        <property type="entry name" value="UbiA prenyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050475">
        <property type="entry name" value="Prenyltransferase_related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044878">
        <property type="entry name" value="UbiA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42723">
        <property type="entry name" value="CHLOROPHYLL SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42723:SF1">
        <property type="entry name" value="CHLOROPHYLL SYNTHASE, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="93"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="122"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="147"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="198"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="222"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="253"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="276" mass="28191" checksum="8A7667EDEB2BB96B" modified="2008-05-20" version="1">MSLWRLIRGEHGVLAALASASSYAVAGGSDAYKLALLAASTFLAEAGLFAHNDLSNLEEDKINRPDAPLVTGAVSVNAARAVAYGSLAAGAALALPLGPAPLAIYAAAAVFGVLYNAKLKRVPVVGNLIVAFLTSMTYLYGMAAAGGTSAALLLLFASSLVANVGREFVKTAMDYEGDLRSGIKTLAVAAGPHTAARLGAAVTLASTALGAVLAYTAVMEKLYALAAGAAATSLALVYLSLEAARGRWRRYRNGTLAAFGVTLLALVAEALWRLFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD32</accession>
    <name>B1YD32_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AraC effector-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0756</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350115.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD32"/>
    <dbReference type="STRING" id="444157.Tneu_0756"/>
    <dbReference type="GeneID" id="6164417"/>
    <dbReference type="KEGG" id="tne:Tneu_0756"/>
    <dbReference type="eggNOG" id="arCOG03200">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1976622_0_0_2"/>
    <dbReference type="OrthoDB" id="24885at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.80.10">
        <property type="entry name" value="Regulatory factor, effector binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010499">
        <property type="entry name" value="AraC_E-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029442">
        <property type="entry name" value="GyrI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011256">
        <property type="entry name" value="Reg_factor_effector_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06445">
        <property type="entry name" value="GyrI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00871">
        <property type="entry name" value="AraC_E_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55136">
        <property type="entry name" value="Probable bacterial effector-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AraC effector-binding" evidence="1">
        <location>
            <begin position="2"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="126" mass="13924" checksum="A4B8E64A292BC8B1" modified="2008-05-20" version="1">MAKIEVKDVQEVRGFSVVKRVTNRAALFADLKQNAVFIFHGKEGQELVFEIFTPDPNGDKVLPASKVASTKFTGSAEKVDNAYATLLFWALKEGKTLGTPIREVYTKVDTKQSPPEVEVEVQAPVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD38</accession>
    <name>B1YD38_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0762</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350121.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD38"/>
    <dbReference type="STRING" id="444157.Tneu_0762"/>
    <dbReference type="GeneID" id="6164413"/>
    <dbReference type="KEGG" id="tne:Tneu_0762"/>
    <dbReference type="eggNOG" id="arCOG05540">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1381468_0_0_2"/>
    <dbReference type="OrthoDB" id="26403at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="198" mass="21648" checksum="320ADC0B941B69D7" modified="2008-05-20" version="1">MHSCVSEKFTLCNPEVDRERALAAALEMEKTLSASPYDLIAVAIAFGADPAEAKRRFAVEISGYRRKPVATFLAYYGKIHGYEKVESELLKLYQAQRGACLCPVGPIAPLEDGRYIVQRPGGIYICGGGECREAAPEPIAVYEHPSGCMFYTPPLVLADQPITAVANALKQLKVAEPDVVARYLLPGLCRDLWGVYIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD39</accession>
    <name>B1YD39_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Alpha-L-glutamate ligase, RimK family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0763</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350122.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD39"/>
    <dbReference type="STRING" id="444157.Tneu_0763"/>
    <dbReference type="GeneID" id="6164544"/>
    <dbReference type="KEGG" id="tne:Tneu_0763"/>
    <dbReference type="eggNOG" id="arCOG01589">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054353_2_0_2"/>
    <dbReference type="OrthoDB" id="33241at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016879">
        <property type="term" value="F:ligase activity, forming carbon-nitrogen bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013651">
        <property type="entry name" value="ATP-grasp_RimK-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004666">
        <property type="entry name" value="Rp_bS6_RimK/Lys_biosynth_LsyX"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00768">
        <property type="entry name" value="rimK_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21621:SF0">
        <property type="entry name" value="BETA-CITRYLGLUTAMATE SYNTHASE B-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21621">
        <property type="entry name" value="RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08443">
        <property type="entry name" value="RimK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="5">
        <location>
            <begin position="116"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="299" mass="33035" checksum="38F28CD2308600B0" modified="2008-05-20" version="1">MEIGIIRPYEVEFNPGDVADLEEAVRKRGHTPVRIYVDMLEVRIESAGLRIRQSVGKSPPVEVAPPGAVLRHLGIFRDFEQFLYRVWAAKALEEAGTYVMNPVERWVVAGDKMAALMKLAKAGLPVPPTVVTENMFVGYRAVGEFKRAVVKQMRGAMGYGAFLVEDPDVAFHIFSMLANINKPIYVQRFLEKGPGDYRVVVVGGRAVGAEYRRADGWKTNVAQGAAPEPAKLTPQLEELAVKAVETLGLDYGGVDIAETREGYYILEVNPTMSWQGFKVATGVNPAEHIVDHLIGKIKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="93" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD67</accession>
    <name>B1YD67_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Tyrosine--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Tyrosyl-tRNA synthetase</fullName>
            <shortName evidence="8">TyrRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">tyrS</name>
        <name evidence="10" type="ordered locus">Tneu_0791</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 8">
            <text>tRNA(Tyr) + L-tyrosine + ATP = L-tyrosyl-tRNA(Tyr) + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10220"/>
            <dbReference type="Rhea" id="RHEA-COMP:9706"/>
            <dbReference type="Rhea" id="RHEA-COMP:9707"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78536"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 4 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.1" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350150.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD67"/>
    <dbReference type="STRING" id="444157.Tneu_0791"/>
    <dbReference type="GeneID" id="6164560"/>
    <dbReference type="KEGG" id="tne:Tneu_0791"/>
    <dbReference type="eggNOG" id="arCOG01886">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035267_1_1_2"/>
    <dbReference type="OrthoDB" id="8389at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004831">
        <property type="term" value="F:tyrosine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006437">
        <property type="term" value="P:tyrosyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.240.10">
        <property type="entry name" value="Tyrosyl-Transfer RNA Synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02009">
        <property type="entry name" value="Tyr_tRNA_synth_type4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002305">
        <property type="entry name" value="aa-tRNA-synth_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002307">
        <property type="entry name" value="Tyr-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023678">
        <property type="entry name" value="Tyr-tRNA-ligase_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023617">
        <property type="entry name" value="Tyr-tRNA-ligase_arc/euk-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050489">
        <property type="entry name" value="Tyr-tRNA_synthase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006330">
        <property type="entry name" value="PRK08560.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00234">
        <property type="entry name" value="tyrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46264:SF4">
        <property type="entry name" value="TYROSINE--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46264">
        <property type="entry name" value="TYROSINE-TRNA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00579">
        <property type="entry name" value="tRNA-synt_1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006588">
        <property type="entry name" value="TyrRS_arch_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01040">
        <property type="entry name" value="TRNASYNTHTYR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="219"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="26"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00048248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="319" mass="35923" checksum="4C68DA0C45A55BD8" modified="2008-05-20" version="1">MEHLLRNVEEVVTKEEFLNLRGGVAYLGFEPLWPIHVGWLVWAHKLAELREAGFDVVVLVATWHAWINDKGSLEELRSHGEKVKAVLDKIGKFKYVYGDEIAKDPRYWELVVKTAKETSLARVRRATPVMGRRTEEVELDFSKLLYPIMQVADIFYLGVDVAVGGMDQRRAHMLARDVAERLGFKKPVAIHTPIITSLSGTGRMEGTHRELDEVYAMYKMSKSKPQSAILVTDAEEEVRRKIWAAYCPPRETKFNPVFEIAAYLLIPYGGPLEVGGRRYEDAEALGKDYREGAVSPQALKEAVAAALAAMLTRLGAPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD86</accession>
    <name>B1YD86_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 14 15">Shikimate kinase</fullName>
            <shortName evidence="14">SK</shortName>
            <ecNumber evidence="4 14 15">2.7.1.71</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="primary">aroK</name>
        <name evidence="17" type="ordered locus">Tneu_0811</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="17" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="13 14">
            <text>shikimate + ATP = 3-phosphoshikimate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13121"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:36208"/>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.71"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 14">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 5/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the GHMP kinase family. Archaeal shikimate kinase subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.71" evidence="4 14 15"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350169.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD86"/>
    <dbReference type="STRING" id="444157.Tneu_0811"/>
    <dbReference type="GeneID" id="6164426"/>
    <dbReference type="KEGG" id="tne:Tneu_0811"/>
    <dbReference type="eggNOG" id="arCOG01025">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073768_0_0_2"/>
    <dbReference type="OrthoDB" id="9602at2157"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00088"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004765">
        <property type="term" value="F:shikimate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00370">
        <property type="entry name" value="Shik_kinase_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribsml_uS5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010189">
        <property type="entry name" value="SK_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01920">
        <property type="entry name" value="Shik_kin_archae"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20861">
        <property type="entry name" value="HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20861:SF3">
        <property type="entry name" value="SHIKIMATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005758">
        <property type="entry name" value="Shikimt_kin_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 14" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="12 14" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="11 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10 14 17" id="KW-0418">Kinase</keyword>
    <keyword evidence="9 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 14 17" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GHMP kinase N-terminal" evidence="16">
        <location>
            <begin position="55"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="80"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00048567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="NCBIfam" id="TIGR01920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF00288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ACB39749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="271" mass="28368" checksum="E8F4A5BE747E2825" modified="2008-05-20" version="1">MGCAVGCAYGGGTVINAIATGHGAAFPISLRVAARVCASDRFEVSTYADVDISPVRRIVERIAERFGLGPLSVEISGDLPTAGGLKSSSAAVNAVIIAAAKLAGARLDLFDVARLNAELSRWAGISVTGAFDDAVASATGRSYLTDNYKMLVIRDLDVSGRAVVLIPPYEKRRHKLDEMRALAPVVRTAVAYAGLGMWREAMLINAVAYGYALGYPPEPTLEALKLGAVGGVSGTGPSHVFISDEPERLADALAKFGKVYVVDIPNSPCQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD93</accession>
    <name>B1YD93_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF2067 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0818</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350176.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD93"/>
    <dbReference type="STRING" id="444157.Tneu_0818"/>
    <dbReference type="GeneID" id="6164283"/>
    <dbReference type="KEGG" id="tne:Tneu_0818"/>
    <dbReference type="eggNOG" id="arCOG00908">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_118420_0_0_2"/>
    <dbReference type="OrthoDB" id="28903at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019202">
        <property type="entry name" value="DUF2067"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09840">
        <property type="entry name" value="DUF2067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="197" mass="21704" checksum="F51A8A110660151D" modified="2008-05-20" version="1">MYLTLSFKFHSREEVERFLSFLERHLKTTYLVDTRLTHVYVQLEGEGRELEEAASLVKSLAALARGGRGRAKVPLLVVFKDAELARPVPPDALADALTLAGAPSEVRGGFLDTAASYEEVLKTAEALSRLYQEAEGYPLTPQAKKIAVVYAYVSGKPLGQALEDLQSAGLLNRGAVLSLRGPPDEARRRLRELLRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDJ4</accession>
    <name>B1YDJ4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Carboxypeptidase regulatory-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0920</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350277.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDJ4"/>
    <dbReference type="STRING" id="444157.Tneu_0920"/>
    <dbReference type="GeneID" id="6164337"/>
    <dbReference type="KEGG" id="tne:Tneu_0920"/>
    <dbReference type="eggNOG" id="arCOG03265">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1318583_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="210" mass="22177" checksum="72AD6E823292F2C7" modified="2008-05-20" version="1">MCLVRPLLALALLAAAAAALGIRDWNDRPLVYGTAAVFDEGGSLVGLTYVFGGEALYGLPWRPGYVLRVAWGIATPSEAASGRVIWIYDSSVARDVYELGAPGGGKIRTWVYPVTVVVREAGGRPAAGCYARVVDAASGGRWVNVFASTASDGSVRLYQAPATDYIVSIYCGGYLAATAKFSVQRGAPSTAWNYEIAVEYITSVKVENAP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDK8</accession>
    <name>Y934_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0282 protein Tneu_0934</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_0934</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0282 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350291.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDK8"/>
    <dbReference type="STRING" id="444157.Tneu_0934"/>
    <dbReference type="GeneID" id="6164355"/>
    <dbReference type="KEGG" id="tne:Tneu_0934"/>
    <dbReference type="eggNOG" id="arCOG00969">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079268_0_0_2"/>
    <dbReference type="OrthoDB" id="21331at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01406">
        <property type="entry name" value="UPF0282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050114">
        <property type="entry name" value="UPF0173_UPF0282_UlaG_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014426">
        <property type="entry name" value="UPF0282_hydrls"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43546">
        <property type="entry name" value="UPF0173 METAL-DEPENDENT HYDROLASE MJ1163-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43546:SF4">
        <property type="entry name" value="UPF0282 PROTEIN MJ1629"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13483">
        <property type="entry name" value="Lactamase_B_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004944">
        <property type="entry name" value="UCP004944_hydrls"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000145505" description="UPF0282 protein Tneu_0934">
        <location>
            <begin position="1"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01406"/>
        </source>
    </evidence>
    <sequence length="305" mass="33914" checksum="8FD82E21C0E66C10" modified="2008-05-20" version="1">MDFSPVGEESLGVRSMCFYVETRDVRILFDAGVSLAPRRFGLPPHPRELERARAVRAEILRLAEAADVVTVSHYHRDHFTPWYPSVYMATDGEMYKRVYGGKRVLLKSPQDLNWSQRRRHYGLSKALREAGAEAVYADGGEWAFGGTRVAASPPLWHGPAGSKTGRVLGFAVSDGEERLVFLPDVEGPLEPEPIAFARGARPTVVVVGGPPTYLGWDLEKAVKNLAELVELRPHTLVLAHHLLRDVQWREKVAPLFELAERRGVVVATYASLAGRPEELLEARRRELYAEEPAAVAEAGEGEEED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDL1</accession>
    <name>B1YDL1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">ABC3 transporter permease protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0937</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDL1"/>
    <dbReference type="STRING" id="444157.Tneu_0937"/>
    <dbReference type="KEGG" id="tne:Tneu_0937"/>
    <dbReference type="eggNOG" id="arCOG02312">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_8_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051125">
        <property type="entry name" value="ABC-4/HrtB_transporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43738:SF2">
        <property type="entry name" value="ABC TRANSPORTER PERMEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43738">
        <property type="entry name" value="ABC TRANSPORTER, MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="23"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="256"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="303"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="364"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="domain" description="MacB-like periplasmic core" evidence="8">
        <location>
            <begin position="23"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="domain" description="ABC3 transporter permease C-terminal" evidence="7">
        <location>
            <begin position="262"/>
            <end position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="11">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="400" mass="42229" checksum="B5F538EDF8F28918" modified="2008-05-20" version="1">MVEVLLEILRLSWQALWERKGRTVGAIVGVVIAFSALSYALLLGQTFKDYTTRYFTSNFQTNVAYVTGALFTDADVGTLSTIEGVEAAIPIASARGVVRISGQATPIPVTVYGVDPALLRLLLPPTALYEGEMVVGSSLVLAGYYVAFDRSTGEQRISVGSPLSLSIGKRSINAIASGILATGALGYIDTARGVVMDISAFRQATGVTTYSVVVLVLRDPSLVEQVANDVRAAFPNVDVISPQAVLQTINSFLTSFQLFLGLIAGVSTVITALWLYDTMSISVVQKTKEIGVLRALGYKRRHVLAMFLGEAAIVALIGVAIGAALLLPLSQMGLPFGGQSTSAAAPRTAPHPTFNISHIEVDPAIVAATAALVVGINLLGAFLPAYRASRINIVAALRYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDL3</accession>
    <name>B1YDL3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ArnR1-like winged helix-turn-helix domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0939</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350296.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDL3"/>
    <dbReference type="STRING" id="444157.Tneu_0939"/>
    <dbReference type="GeneID" id="6164638"/>
    <dbReference type="KEGG" id="tne:Tneu_0939"/>
    <dbReference type="eggNOG" id="arCOG01055">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_159725_1_0_2"/>
    <dbReference type="OrthoDB" id="140255at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038723">
        <property type="entry name" value="ArnR1-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14947">
        <property type="entry name" value="HTH_45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ArnR1-like winged helix-turn-helix" evidence="1">
        <location>
            <begin position="5"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="85" mass="9705" checksum="9194CD7FBD910D05" modified="2008-05-20" version="1">MARKRRTRLEIIADILAVLSTGCRPPTRLATEANLAYDRMAKIMESLVEKGLVREDAGVYCITQEGHRLLEAYRQWRNFLDAVGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="33" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDL5</accession>
    <name>B1YDL5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0942</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDL5"/>
    <dbReference type="KEGG" id="tne:Tneu_0942"/>
    <dbReference type="HOGENOM" id="CLU_2534817_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="83" mass="9182" checksum="81C2BEEE317A5B2B" modified="2008-05-20" version="1">MVHLPDGVVVRQVGQESRCEEAALEPPPLSPAATALHLTRGSTEIAPEKVDFAKREKVKYRHGQYTEDIATTKNTPKTVSHVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDM7</accession>
    <name>B1YDM7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Adhesin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0955</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350310.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDM7"/>
    <dbReference type="STRING" id="444157.Tneu_0955"/>
    <dbReference type="GeneID" id="6164335"/>
    <dbReference type="KEGG" id="tne:Tneu_0955"/>
    <dbReference type="eggNOG" id="arCOG05417">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1136094_0_0_2"/>
    <dbReference type="OrthoDB" id="28677at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="244" mass="25345" checksum="F35A423E856622EF" modified="2008-05-20" version="1">MRCFCGRPAGEGGLCPYHDPGCVRDPACRRQLVFTADCEGCSLPGGEAVEVAPRLRGARIYGPLVVEFVVGDVDLRGARGVDLFVYSVRGDIYLEGARFRHIYIDQAAGGVYFSGGVAYSFFAASVEGRISARGARVGGHVVVVDSSGALDLSGASAAGEVAVDGFRGDVAAGARAYAVSLSRVRGDVDLSGGRVEGDVAVVESSGGRLDLSGLEVGGRVFVLGSRFGGVRVDRAEVLRRLVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="36" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDN1</accession>
    <name>B1YDN1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0959</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDN1"/>
    <dbReference type="STRING" id="444157.Tneu_0959"/>
    <dbReference type="KEGG" id="tne:Tneu_0959"/>
    <dbReference type="HOGENOM" id="CLU_2067902_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="11"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="118" mass="13175" checksum="828174F2D29CCD90" modified="2008-05-20" version="1">MTTMAANQAIYIRGDGNTPHNEPRKKISTPLGMDPGPILVAIRKTLKIINENKEVELVDVDIAKEIDGNWETTVIKYAMRGDADALLKVWDQLSKTIHGELKKLGIDKDVFVVVEPHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDQ5</accession>
    <name>B1YDQ5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Peptidase S26B, signal peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0985</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350338.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDQ5"/>
    <dbReference type="STRING" id="444157.Tneu_0985"/>
    <dbReference type="GeneID" id="6164607"/>
    <dbReference type="KEGG" id="tne:Tneu_0985"/>
    <dbReference type="eggNOG" id="arCOG01739">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_726874_0_0_2"/>
    <dbReference type="OrthoDB" id="4822at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06530">
        <property type="entry name" value="S26_SPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.109.10">
        <property type="entry name" value="Umud Fragment, subunit A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001733">
        <property type="entry name" value="Peptidase_S26B"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02228">
        <property type="entry name" value="sigpep_I_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10806">
        <property type="entry name" value="SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10806:SF6">
        <property type="entry name" value="SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00728">
        <property type="entry name" value="SIGNALPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="LexA/Signal peptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="42"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="198"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="222"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="368" mass="39473" checksum="CCB686419B0F68D7" modified="2008-05-20" version="1">MDGRHLWLAVPLLSLAPAFVKVELWTLAPVWGLLALYFSRYVWGGGLASGLAPAAAYMAVWAGLGLVFGFEANRYGGSPTATLLNGVYFGLAALAREFARYAALSLRAEELYLLGPPKRLLWSRGDLWTGLVSTALAVDASWLSPSPQWVGLSLVPSLSISHACSLLQRRYGPFASLPLATVWGALPYVSPAVPKSPWVLYGLVHLLLLLGVMAEDAPRRDLIPAVGAVALAAFLVGAFGVRPFVVATGSMSPLYQPGDVVFVVPIRHAEVGDVVLYRADFGYVLHRVIDVREVGGRTYYITKGDANPTPDARPVPQEAVLGKAVFKVPYVGTPALWARDPSSWPLLAVLLAAAAGLEHLLKTLLKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDT8</accession>
    <name>B1YDT8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Diadenosine 5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1020</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350371.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDT8"/>
    <dbReference type="STRING" id="444157.Tneu_1020"/>
    <dbReference type="GeneID" id="6164881"/>
    <dbReference type="KEGG" id="tne:Tneu_1020"/>
    <dbReference type="eggNOG" id="arCOG01078">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037162_14_4_2"/>
    <dbReference type="OrthoDB" id="25379at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004081">
        <property type="term" value="F:bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006167">
        <property type="term" value="P:AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006754">
        <property type="term" value="P:ATP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03428">
        <property type="entry name" value="NUDIX_Ap4A_Nudt2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.79.10">
        <property type="entry name" value="Nucleoside Triphosphate Pyrophosphohydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051325">
        <property type="entry name" value="Nudix_hydrolase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003565">
        <property type="entry name" value="Tetra_PHTase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21340:SF0">
        <property type="entry name" value="BIS(5'-NUCLEOSYL)-TETRAPHOSPHATASE [ASYMMETRICAL]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21340">
        <property type="entry name" value="DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="Nudix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="6">
        <location>
            <begin position="3"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00018911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00032644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="139" mass="15982" checksum="C1964E99A557EBF7" modified="2008-05-20" version="1">MEYDEVSAGAVVFHRSEGAVEYLLLHYPAGHWDFPKGNVEPGETPEQTALREIREETGLEVVLIPGFMEEVEYVYARGGRRVRKKVIFFLAEAKTKEVKLSWEHTGYVWLPFDKALARATYETTRRVLAKAHRHVKHGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDU4</accession>
    <name>B1YDU4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1026</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350377.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDU4"/>
    <dbReference type="STRING" id="444157.Tneu_1026"/>
    <dbReference type="GeneID" id="6164994"/>
    <dbReference type="KEGG" id="tne:Tneu_1026"/>
    <dbReference type="eggNOG" id="arCOG05631">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_620583_0_0_2"/>
    <dbReference type="OrthoDB" id="91586at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036918">
        <property type="entry name" value="Pyrv_Knase_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52935">
        <property type="entry name" value="PK C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="436" mass="45016" checksum="1409F027D199EF0B" modified="2008-05-20" version="1">MKSGIITAVALIIGIAVGALLGGYAAPKPAPTTVVSTVTQTSVVTQTSVQTVTQTVVQTTTVAPPAPRLSAADVELRRSVGSLVGRYFLSQFPTVAVATQPNVLCSALASASLAALPSYSRGYLVLYNATSPEASAARAAGAAAVFLAFGGEETPAVADKSMRDFLAALAKTNFTGALVVNGRAFAATDSFKTVLNDTRISSWVKARPVYVVSANATHVTVSRLNVTTGALAPVLVADRRTGEAVRRYTDSDSLFLRSAVGRVAGGVLFKGYGRVAIVTGTDPACAALTGAAFASSRANSTRIIVYTGDGAALAREIAEYRPDAVFIAFGGDMPSYAISQATRGVLAALASANYTGDVLLHAFVLRATNLLATALDDKTAHWLSQRTVKGIVPDLANRRVNIVVFAVADGKLRPVNVTATLPMPEAVAQALAKILS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDU8</accession>
    <name>B1YDU8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH arsR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1030</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350381.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDU8"/>
    <dbReference type="STRING" id="444157.Tneu_1030"/>
    <dbReference type="GeneID" id="6165009"/>
    <dbReference type="KEGG" id="tne:Tneu_1030"/>
    <dbReference type="eggNOG" id="arCOG05425">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2140300_0_0_2"/>
    <dbReference type="OrthoDB" id="29075at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="domain" description="HTH arsR-type" evidence="2">
        <location>
            <begin position="36"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="110" mass="12115" checksum="4ED9863C626D5027" modified="2008-05-20" version="1">MRYLLAAIAVAAFAASLSIAFPRLAPLVLRISAIALLAIAALWLIEYIAARPPPLAQRILKTLRARGPLTAGELARELNADPTEVAEALQYLLEKGLVRRYRVGEEEYFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDV4</accession>
    <name>B1YDV4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1036</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350387.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDV4"/>
    <dbReference type="STRING" id="444157.Tneu_1036"/>
    <dbReference type="GeneID" id="6164860"/>
    <dbReference type="KEGG" id="tne:Tneu_1036"/>
    <dbReference type="eggNOG" id="arCOG04009">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1912413_0_0_2"/>
    <dbReference type="OrthoDB" id="23657at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="134" mass="14725" checksum="E0D4DBDB8CC0BF63" modified="2008-05-20" version="1">MVEAVEASIVEYKPAVAVFETPEFGRVAVRLIPIVAEIQRVGEGYNVGLVMKTAVEAERRVYSGLLCSQEIPLRPVPLEDKQIGRVLVRGEDGTVLEAYIEVDRVFVGVGASDRLGRPCVNVVWSYGIRMPPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDX8</accession>
    <name>B1YDX8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1060</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350410.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDX8"/>
    <dbReference type="STRING" id="444157.Tneu_1060"/>
    <dbReference type="GeneID" id="6166305"/>
    <dbReference type="KEGG" id="tne:Tneu_1060"/>
    <dbReference type="eggNOG" id="arCOG04074">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1943938_0_0_2"/>
    <dbReference type="OrthoDB" id="32867at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12837">
        <property type="entry name" value="Fer4_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="2">
        <location>
            <begin position="31"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="129" mass="13394" checksum="DDF35F237DF59652" modified="2008-05-20" version="1">MKLTRRVAAIDGRRCAKCNLCVRTCPTGALKPPRVLYSRCTGCGLCTYTCPRGAIEMATRPSLAAYLLIGVLALAAVSAAGLILLTPYLYPSHAQTLNFTANVTLPTFTPTNATVPTGEEAAGAGSGFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="46" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDX9</accession>
    <name>B1YDX9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1061</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350411.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDX9"/>
    <dbReference type="STRING" id="444157.Tneu_1061"/>
    <dbReference type="GeneID" id="6164487"/>
    <dbReference type="KEGG" id="tne:Tneu_1061"/>
    <dbReference type="eggNOG" id="arCOG09852">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1438165_0_0_2"/>
    <dbReference type="OrthoDB" id="23451at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="188" mass="21440" checksum="020E24EC0CB6F1C7" modified="2008-05-20" version="1">MIYIYSVPETHPFLINLLRGRGKTLSLPLAHCPLLISHAYGRLSKRQLLEKTGFSDAFYARGEGLIRQLHGLTKRFEVRCYYDPDLVKGRERAMYQAAQLAFLKLRGVEADVKIEFPRLGGCVEGDFVVVDNYIDFLTLRGCGEWIYLREPKPTPVEEFILTGDLDVQRYLAHLSVAHREGLARALSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE06</accession>
    <name>B1YE06_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Thiamine transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1088</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE06"/>
    <dbReference type="STRING" id="444157.Tneu_1088"/>
    <dbReference type="KEGG" id="tne:Tneu_1088"/>
    <dbReference type="eggNOG" id="arCOG00163">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_579547_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43357">
        <property type="entry name" value="INNER MEMBRANE ABC TRANSPORTER PERMEASE PROTEIN YDCV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43357:SF4">
        <property type="entry name" value="INNER MEMBRANE ABC TRANSPORTER PERMEASE PROTEIN YDCV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="36"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="74"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="99"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="157"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="190"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="238"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="281"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="312"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="338"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="445"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="40"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="471" mass="49158" checksum="BC98A8735461F24D" modified="2008-05-20" version="1">MKPHGLPALFFLALFTTPYAALFAKLGFSPQLDPYSLWVLLFTAGQAAASALLSTALGLALLPAYVRAPWLKPVALVPFFAPALSTVDALARLHGDFMYGPWGIVLAHGVYYGPYSALLLESNLRSIPSDLLDALALYTRRRATAARVLLAELKPSLLYSLYTTYVFSFLSFTTPLLLGGRYPTVELLVYLYATSFASTALAAPLVLVSLAASAALAAPFFKIPPPPPAGPAPSTPRVGPAATAASAAVALYFAVVAAYIFAPLASPRAVGDLARPLANSLQVALVSSGAALAMGLLLLVGDAAASKAPAVAYAASLSLSRSVFALGFFYLAQPLYGTLIALAAAHALVLTPLVYSLLKPSWDKIRSDVREACVLYLGPTRCVVRAAAEALGPSIVQAWLLAFAASLSETTLAYILTAGGEPTIAAAAARLLTSRAPELIEAGHFYSAVLAAAVMAAVAASRLIRPRPYSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE11</accession>
    <name>B1YE11_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Periplasmic binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1093</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350443.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE11"/>
    <dbReference type="STRING" id="444157.Tneu_1093"/>
    <dbReference type="GeneID" id="6165585"/>
    <dbReference type="KEGG" id="tne:Tneu_1093"/>
    <dbReference type="eggNOG" id="arCOG03417">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025776_0_0_2"/>
    <dbReference type="OrthoDB" id="24039at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd01141">
        <property type="entry name" value="TroA_d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1980">
        <property type="entry name" value="Nitrogenase molybdenum iron protein domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050902">
        <property type="entry name" value="ABC_Transporter_SBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30535:SF34">
        <property type="entry name" value="MOLYBDATE-BINDING PROTEIN MOLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30535">
        <property type="entry name" value="VITAMIN B12-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53807">
        <property type="entry name" value="Helical backbone' metal receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="1">
        <location>
            <begin position="146"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="428" mass="47912" checksum="4EFF8A04FDD76565" modified="2008-05-20" version="1">MQSRLAYLLAAVALAVAAAAFVQTYYAVQAVNDKLAQLQSRVEAVGAEVSRGLAGVEAKLSSINSTAAAAYREAKLLREISGRPSGFVPVRYARLFSIQYEGDVYILRDALGRRILLLPRGMSQDLANYYRAKYRPDAVVYYPVKRAVYMSSTEVAMAYRLYKEAGRADVLRSIVGIMWGREYRWYLPEVEAMLNNGTIADVGPAYSPDFEKIASLKPDVVFVFYYPGPYGTESVVKKLDQLGIPYAVVNEFQEQTALGRAEWIKFIAAFYNATDDAVKIFDRVEARWSSLASLVADLDRPRVAWFTIFGGVLYPAGAGVRDLIRTAGGRYAYANYSRVDLEVVLKHKNDVDVLIWSSYGVSSVRDLLKVEPRLAELRPVVLGRVYAYSPAFYQLANAYPERLLEELVWIIHPEVAPPGNFTLFVHLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE29</accession>
    <name>B1YE29_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1111</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350461.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE29"/>
    <dbReference type="STRING" id="444157.Tneu_1111"/>
    <dbReference type="GeneID" id="6165713"/>
    <dbReference type="KEGG" id="tne:Tneu_1111"/>
    <dbReference type="eggNOG" id="arCOG04583">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_856901_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransferase type 11" evidence="1">
        <location>
            <begin position="230"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="367" mass="39869" checksum="50717A0B3CFEF624" modified="2008-05-20" version="1">MFLFVGALRFVFAPFFAGGDVATCGVVGRLCCGSGRLGVNYWVGRHVAVVRGELGSLRRWFIPCSVDRRRMPPLARYERGGFVRLLGGGVWVDVGAVRGTEVGGVVARLAERWRVCGGRDVYSLARCVGVAVGSLVDVVVLLRGLFPNLVEVYSGGVSFDEFLRGFGVGGAVDAGVLWEEARRFVRGGVVVPNLGLLPRGRYVSVRSRAARYAIPPILSYADFKNAVVADVGSGFGTKGAASLRWGARHVVLLDVDEAVLRERGSGLLVDRVVADAHMLPLRDRAADVVIFWNVLNFLSDPDRAVEEVGRVARREVVFSVYNAASGRQISYGEFLEVLSRWGVPKAVRRLGNSQMQAVVRRHEDPGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE31</accession>
    <name>B1YE31_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1113</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350463.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE31"/>
    <dbReference type="STRING" id="444157.Tneu_1113"/>
    <dbReference type="GeneID" id="6165897"/>
    <dbReference type="KEGG" id="tne:Tneu_1113"/>
    <dbReference type="eggNOG" id="arCOG00792">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_507748_0_0_2"/>
    <dbReference type="OrthoDB" id="382646at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050534">
        <property type="entry name" value="Coronavir_polyprotein_1ab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041679">
        <property type="entry name" value="DNA2/NAM7-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43788:SF8">
        <property type="entry name" value="DNA-BINDING PROTEIN SMUBP-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43788">
        <property type="entry name" value="DNA2/NAM7 HELICASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13087">
        <property type="entry name" value="AAA_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DEAD/DEAH-box helicase" evidence="5">
        <location>
            <begin position="41"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="DNA2/NAM7 helicase-like C-terminal" evidence="6">
        <location>
            <begin position="329"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="484" mass="54361" checksum="DB43015CD24BC983" modified="2008-05-20" version="1">MSTSFYNVDRIVKRLDQEQSRRQRVDVVFKGPPYSDIGKAVEDIVAEKLRVVGVAGVPGAGKTTFYAYLLSNLLGDSLCRGAAENLYIYIAPTNELLVDFLEKFAAFMSARGGCRSSDFAKAVRIYGSKISASEFTQLLKRADERVGLIISTDWQRVYARMYPPRPAYLLIDEASRMTLARFLVPIADGLAKGKPDDLIRGFAVIGDPNQAIGISEDEREWLLLEKAVQLREQGSDYVEIKRLDVSMRLPPETETPIKEGYYAGDLRAMGKPYLLGLTSDEVKEVMKRVAGDCERYGGAVEEALTKLSNTPLLYIETEVFEKGDQYDIERAKLTSCLAKAIRAAVELKKDEKRIAVVAPYGKMAFAARILAGDADIRFSTVASFLGREDDIIIAPAAKEYTDIAFWTYYFSDPYIFNVQLSRQRGTLVVIGHMTSLKEETETLFKRSERGLKRLKKTQVEGLRKLMKTAEMFENLEETKKVVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE39</accession>
    <name>B1YE39_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Antitoxin SocA-like Panacea domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1121</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE39"/>
    <dbReference type="STRING" id="444157.Tneu_1121"/>
    <dbReference type="KEGG" id="tne:Tneu_1121"/>
    <dbReference type="eggNOG" id="arCOG07011">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1521936_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025272">
        <property type="entry name" value="SocA_Panacea"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13274">
        <property type="entry name" value="SocA_Panacea"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Antitoxin SocA-like Panacea" evidence="1">
        <location>
            <begin position="31"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="188" mass="21750" checksum="FF16BA8D6EB58964" modified="2008-05-20" version="1">MGVVEVGRRALLYLVVSHWRRWGEVWGKKKVQKLMFLVEHWDGGRGVSRSLGLTGYGFVVWLYGPYSPQVDEDLEWLVEEGYISERVYGYDSYHSVVADGEVVRLGFYDDDKSPKVIYVYRPTWRARFVRVEEKLRARIDAVVDKFGRYTANELEILTTAMLGVEKRKTLGKRVDEIVQLGGGTRNTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE40</accession>
    <name>B1YE40_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP8</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1122</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350472.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE40"/>
    <dbReference type="STRING" id="444157.Tneu_1122"/>
    <dbReference type="GeneID" id="6166082"/>
    <dbReference type="KEGG" id="tne:Tneu_1122"/>
    <dbReference type="eggNOG" id="arCOG03723">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_142665_1_0_2"/>
    <dbReference type="OrthoDB" id="27722at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.330">
        <property type="entry name" value="Nucleotidyltransferases domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34237:SF1">
        <property type="entry name" value="PAREP8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34237">
        <property type="entry name" value="PAREP8-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="125" mass="14494" checksum="16F064F4A1634C46" modified="2008-05-20" version="1">MLEEARRALKAAYEELERFGKTGDPMLVRDAAEKGWLAVVEAVEELLGAYGVEAKTYREKRDALYRLGFAELVDRFAAREKLLHIDCFYDGMCDEQYVREYLKDVEDILDEVRRRLQRLKGRGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8J8</accession>
    <name>B1Y8J8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ATPase AAA-type core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1147</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350496.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8J8"/>
    <dbReference type="STRING" id="444157.Tneu_1147"/>
    <dbReference type="GeneID" id="6166039"/>
    <dbReference type="KEGG" id="tne:Tneu_1147"/>
    <dbReference type="eggNOG" id="arCOG06982">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_840964_0_0_2"/>
    <dbReference type="OrthoDB" id="350864at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="335" mass="37260" checksum="AE9D3841C63FC21E" modified="2008-05-20" version="1">MDNAQPHLKVILKSDGLTYGDTKLKVDIELDVGGATALIGPNMAGKSLALHCIAARSRRLYARAMPELPPELDCRVEPDLDYYAVLVDAYRVMAQAYEKLLEKPLGYISSEAEELKNYSDERIRAAGYSIGERVVDISKAAGGDHLVAKELKLRARDTLLWEAGQVFRDLVVEFEKASERLREEVREVFTDYAPLLLSAVEEGFVWEDLAMGARGRRLGQLSSVFAPALVALYAAYTYALGEAAYLLVEEPEAHAHPLYAFFLGRYLRRLVERSGGRFNVVAATHSLDFVRGLGGRTYVLRRSRERGIYVAGEWKGEAYVPGFSDPAIYQLFGGV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="94" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8P8</accession>
    <name>KAE1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA N6-adenosine threonylcarbamoyltransferase</fullName>
            <ecNumber evidence="1">2.3.1.234</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">N6-L-threonylcarbamoyladenine synthase</fullName>
            <shortName evidence="1">t(6)A synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">t(6)A37 threonylcarbamoyladenosine biosynthesis protein Kae1</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA threonylcarbamoyladenosine biosynthesis protein Kae1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">kae1</name>
        <name type="ordered locus">Tneu_1199</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-threonylcarbamoyladenylate + adenosine(37) in tRNA = N(6)-L-threonylcarbamoyladenosine(37) in tRNA + AMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:37059"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10163"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:73682"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74418"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.3.1.234"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="1">Binds 1 Fe(2+) ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the KAE1 / TsaD family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.234" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350546.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8P8"/>
    <dbReference type="SMR" id="B1Y8P8"/>
    <dbReference type="STRING" id="444157.Tneu_1199"/>
    <dbReference type="GeneID" id="6165281"/>
    <dbReference type="KEGG" id="tne:Tneu_1199"/>
    <dbReference type="eggNOG" id="arCOG01183">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023208_2_2_2"/>
    <dbReference type="OrthoDB" id="6818at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000408">
        <property type="term" value="C:EKC/KEOPS complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061711">
        <property type="term" value="F:tRNA N(6)-L-threonylcarbamoyladenine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01446">
        <property type="entry name" value="Kae1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000905">
        <property type="entry name" value="Gcp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017861">
        <property type="entry name" value="KAE1/TsaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034680">
        <property type="entry name" value="Kae1_archaea_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017860">
        <property type="entry name" value="Peptidase_M22_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03722">
        <property type="entry name" value="arch_KAE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00329">
        <property type="entry name" value="gcp_kae1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735">
        <property type="entry name" value="TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735:SF14">
        <property type="entry name" value="TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00814">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00789">
        <property type="entry name" value="OSIALOPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01016">
        <property type="entry name" value="GLYCOPROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0012">Acyltransferase</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <feature type="chain" id="PRO_1000146049" description="tRNA N6-adenosine threonylcarbamoyltransferase">
        <location>
            <begin position="1"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="129"/>
            <end position="133"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="286"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01446"/>
        </source>
    </evidence>
    <sequence length="336" mass="35547" checksum="BBCD7A9CE5687880" modified="2008-05-20" version="1">MLVLGVESTAHTFSIGVVKDGVVLGQLGKTYIPPGGGGIHPREAAEHHARVAPSILRQLLGQLGVGLSDIGAVAYAAGPGLGPALRVGAVLARALAIRLGVPVVPVHHGVAHIEVARYATGACDPLVVLISGGHTVVAGYSDGRYRVFGETLDVAIGNAIDMFAREVGLGFPGVPAVEKCAESAETVVPFPMPIVGQDLSYAGLATHALQLVKRGVPLPVVCRSLVETAYYMLAEVVERALAYTRKREVVVAGGVARSRRLKEILRAVGEEHGAVVKVVPDEYAGDNGAMIALTGYYAYRRGVYTTPEGSFVRQRWRLDSVDVPWFRDLCPVTTYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8P9</accession>
    <name>B1Y8P9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350547.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8P9"/>
    <dbReference type="STRING" id="444157.Tneu_1200"/>
    <dbReference type="GeneID" id="6165302"/>
    <dbReference type="KEGG" id="tne:Tneu_1200"/>
    <dbReference type="eggNOG" id="arCOG05621">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2191119_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="107" mass="11625" checksum="D6A42499CE75854B" modified="2008-05-20" version="1">MKLALALIGAGAALVAFALANALYLYFSAVPKTALNVTAPLIGQVKISGVPDPYHVGVGVLRGVLLLAIGLIGGKLIDTGLAELRERRREEALRRYYEQYGYQYQQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Q4</accession>
    <name>B1Y8Q4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 8">Small ribosomal subunit protein uS5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rps5</name>
        <name evidence="12" type="ordered locus">Tneu_1206</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">With S4 and S12 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">Part of the 30S ribosomal subunit. Contacts protein S4.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 10">Belongs to the universal ribosomal protein uS5 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350552.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Q4"/>
    <dbReference type="STRING" id="444157.Tneu_1206"/>
    <dbReference type="GeneID" id="6165381"/>
    <dbReference type="KEGG" id="tne:Tneu_1206"/>
    <dbReference type="eggNOG" id="arCOG04087">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065898_0_1_2"/>
    <dbReference type="OrthoDB" id="38155at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.160.20:FF:000002">
        <property type="entry name" value="40S ribosomal protein S2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.230.10:FF:000004">
        <property type="entry name" value="40S ribosomal protein S2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01307_A">
        <property type="entry name" value="Ribosomal_uS5_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000851">
        <property type="entry name" value="Ribosomal_uS5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047866">
        <property type="entry name" value="Ribosomal_uS5_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005324">
        <property type="entry name" value="Ribosomal_uS5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005711">
        <property type="entry name" value="Ribosomal_uS5_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013810">
        <property type="entry name" value="Ribosomal_uS5_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018192">
        <property type="entry name" value="Ribosomal_uS5_N_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribsml_uS5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003125">
        <property type="entry name" value="PRK04044.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01020">
        <property type="entry name" value="uS5_euk_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13718:SF4">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13718">
        <property type="entry name" value="RIBOSOMAL S SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00333">
        <property type="entry name" value="Ribosomal_S5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03719">
        <property type="entry name" value="Ribosomal_S5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54768">
        <property type="entry name" value="dsRNA-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00585">
        <property type="entry name" value="RIBOSOMAL_S5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50881">
        <property type="entry name" value="S5_DSRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8 9" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 8 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 8" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="S5 DRBM" evidence="11">
        <location>
            <begin position="50"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00035255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB40133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="202" mass="22253" checksum="FDA1303F5F47E17B" modified="2008-05-20" version="1">MSVVDLSIWEPRTELGRLVKEGKIRTIDEVFANNYIIKEPEIVDVLVPGLKQELLNVNLVQRQTHAGERNQFQAVVVVGNEDGYVGVGIGKARQVRQAIEKATREAKLNLTPVRRGCGSWKCSCDEPHSVPIVVRGKSGSVEVTLIPAPKGVGLVAGDVAKAVLRLAGVRDVWTKTRGDTRSTLNFAMAVYNALRNTYYFRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8T0</accession>
    <name>B1Y8T0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1232</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350578.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8T0"/>
    <dbReference type="GeneID" id="6166151"/>
    <dbReference type="KEGG" id="tne:Tneu_1232"/>
    <dbReference type="eggNOG" id="arCOG05603">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1227720_0_0_2"/>
    <dbReference type="OrthoDB" id="27781at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="219" mass="24387" checksum="A6289BD8A7776407" modified="2008-05-20" version="1">MNNWLIMAIAFAATAGLLFATLATGAYGREPLFKPYWEDQAKRQEILGKAAQIGVLAQRGSQGVVVVGYRDQLNATNRQELLATLNELLKAADGYTVYLAPWATDNATKRYLSLLYSGKIALQDYLRGRVETSTLYDQRVDQALDLATLVANTYGQYRPLGGSPVSQTPPIYVAIFRNDTSYVVYEPFTVGRDRTYADWFKWVKTAIVNLGQEQGKVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8U2</accession>
    <name>B1Y8U2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1244</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350590.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8U2"/>
    <dbReference type="STRING" id="444157.Tneu_1244"/>
    <dbReference type="GeneID" id="6166033"/>
    <dbReference type="KEGG" id="tne:Tneu_1244"/>
    <dbReference type="eggNOG" id="arCOG05686">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2461888_0_0_2"/>
    <dbReference type="OrthoDB" id="27717at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="89" mass="9959" checksum="EAC1C17D8D86B5FA" modified="2008-05-20" version="1">MNLLHFIGSFHVEVAKMLDKVVSYGEAGGLMEWVNGEVGRSEVYFLWFPKTGRLAYAVRGPLHRGSGEVEAKNAAEAIAQAERLIRRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8U9</accession>
    <name>B1Y8U9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1251</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350597.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8U9"/>
    <dbReference type="STRING" id="444157.Tneu_1251"/>
    <dbReference type="GeneID" id="6165981"/>
    <dbReference type="KEGG" id="tne:Tneu_1251"/>
    <dbReference type="eggNOG" id="arCOG03774">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1017875_0_0_2"/>
    <dbReference type="OrthoDB" id="26390at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="259" mass="28130" checksum="0C07461B05B407BF" modified="2008-05-20" version="1">MSSALDSGIAGSRYMRILLKQTEVKADDALGRIYGLLAELGYFAKRGDRYKRTGKLPPAVSSRLLGAVFDDVIIPHLLGDPVKPNYEALFAATALFQGLRVRAAEKLGRGGIVLVAGWLPCGFSTEVAAATGADLVILDEHWEILALEEERMSLLPLELVKVGTEMAPSLYVGFEVGRLEDLPLDKYGRFTLALVCHRGVDVRKAREIAERVYRVTFSGGLGIFADLIAEALGLGRGEECGRGGKTIYKDRDLCITDVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8V4</accession>
    <name>B1Y8V4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Large ribosomal subunit protein eL32</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpl32e</name>
        <name evidence="6" type="ordered locus">Tneu_1256</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the eukaryotic ribosomal protein eL32 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350602.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8V4"/>
    <dbReference type="STRING" id="444157.Tneu_1256"/>
    <dbReference type="GeneID" id="6165982"/>
    <dbReference type="KEGG" id="tne:Tneu_1256"/>
    <dbReference type="eggNOG" id="arCOG00781">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071479_3_0_2"/>
    <dbReference type="OrthoDB" id="372100at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00513">
        <property type="entry name" value="Ribosomal_L32_L32e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00810">
        <property type="entry name" value="Ribosomal_eL32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001515">
        <property type="entry name" value="Ribosomal_eL32"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023654">
        <property type="entry name" value="Ribosomal_eL32_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036351">
        <property type="entry name" value="Ribosomal_eL32_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006332">
        <property type="entry name" value="PRK08562.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23413">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23413:SF1">
        <property type="entry name" value="RIBOSOMAL PROTEIN L32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01655">
        <property type="entry name" value="Ribosomal_L32e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01393">
        <property type="entry name" value="Ribosomal_L32e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52042">
        <property type="entry name" value="Ribosomal protein L32e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00035229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="153" mass="17951" checksum="EA31289B9812DE59" modified="2008-05-20" version="1">MSARPRRDLPQPLRRLLKLRLVLKRRKPEFVRIDQWRYKRIEDSGWRNQRTIDNKIRRKWKGWPKPVEVGYRKPAAVRGLHPSGFVEVLVHSPDQLAGLDPKTHAVRIGGTVGLRKRLEIVKKARELGFYVLNPGRRVEELLKKELNKAQSGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8X1</accession>
    <name>B1Y8X1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1273</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350619.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8X1"/>
    <dbReference type="GeneID" id="6165796"/>
    <dbReference type="KEGG" id="tne:Tneu_1273"/>
    <dbReference type="eggNOG" id="arCOG07042">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1782551_0_0_2"/>
    <dbReference type="OrthoDB" id="29152at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="144" mass="15616" checksum="F37DFC4548DC96BA" modified="2008-05-20" version="1">MRWLYLTYVIYWSSVALSAALALAGHPLVDPRALEKAYNETAALPYEQRLLQSAAYVAAVALMSYPALIYAATAFGVVTAAMAGAFGLGPALVNSAVMQLVLLFLEEVARWHPAAQYLAGRRVDWRRYLLWVAAALSLAGVLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8X8</accession>
    <name>B1Y8X8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350626.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8X8"/>
    <dbReference type="STRING" id="444157.Tneu_1280"/>
    <dbReference type="GeneID" id="6165867"/>
    <dbReference type="KEGG" id="tne:Tneu_1280"/>
    <dbReference type="eggNOG" id="arCOG00737">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_157721_0_0_2"/>
    <dbReference type="OrthoDB" id="28610at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36216:SF1">
        <property type="entry name" value="HTH ARSR-TYPE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36216">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR, TRMB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13412">
        <property type="entry name" value="HTH_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="7"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="120" mass="13495" checksum="A2033E92D5B8A671" modified="2008-05-20" version="1">MGAKDPKAAIVEILKREGPVPVYRLAKALGMSYGAIQWYIYTLEREGVVETVKIGKRRYVVLKASDWMGNVKVGDVLEEFLLTLAALGVRQDMTLREALETLEKKAPHIAELLRRLVEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Y0</accession>
    <name>B1Y8Y0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Peptidase M24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1282</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M24B family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350628.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Y0"/>
    <dbReference type="STRING" id="444157.Tneu_1282"/>
    <dbReference type="GeneID" id="6165630"/>
    <dbReference type="KEGG" id="tne:Tneu_1282"/>
    <dbReference type="eggNOG" id="arCOG01000">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017266_4_0_2"/>
    <dbReference type="OrthoDB" id="1346at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="entry name" value="Creatinase/methionine aminopeptidase superfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="entry name" value="Creatinase/prolidase N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000587">
        <property type="entry name" value="Creatinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050659">
        <property type="entry name" value="Peptidase_M24B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001131">
        <property type="entry name" value="Peptidase_M24B_aminopep-P_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46112">
        <property type="entry name" value="AMINOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46112:SF9">
        <property type="entry name" value="XAA-PRO AMINOPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01321">
        <property type="entry name" value="Creatinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="Creatinase/aminopeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="Creatinase/prolidase N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00491">
        <property type="entry name" value="PROLINE_PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Creatinase N-terminal" evidence="5">
        <location>
            <begin position="14"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase M24" evidence="4">
        <location>
            <begin position="131"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="336" mass="36417" checksum="4B999E72C02AC947" modified="2008-05-20" version="1">MTAPPAGRPPEEAALIATTTVNFAYFTGVWLETYERFKAVVICGGRKAAVVPALDAGRIAGEVYAYKDGEDPAQALRQAAAGCRTDVVYIDGGTTLRHLDIVKRALPHARLATADAVIRELRAVKRRDEVERIKTAALKIRAVLESLELTPGISERQLAARIYTSLYEEGLDPGPILVQFGPNTALPHQEPTEKKLRQGEAAVLDVSASYRGYYADLTKSLYYGNPPEEYRRIYAAVEEAQRAALSAARPGAGASEVDKAARGTIERWGYGPYFIHRTGHGLGLEIHEAPDVSPASPDVLKPGMVFTIEPGVYIPGKYGVRLEIDVHLGEGGPEVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y907</accession>
    <name>B1Y907_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alpha-amylase</fullName>
            <ecNumber evidence="4">3.2.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1309</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 57 family.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.1" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350655.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y907"/>
    <dbReference type="STRING" id="444157.Tneu_1309"/>
    <dbReference type="CAZy" id="GH57">
        <property type="family name" value="Glycoside Hydrolase Family 57"/>
    </dbReference>
    <dbReference type="GeneID" id="6165387"/>
    <dbReference type="KEGG" id="tne:Tneu_1309"/>
    <dbReference type="eggNOG" id="arCOG03278">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033691_0_0_2"/>
    <dbReference type="OrthoDB" id="64936at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004556">
        <property type="term" value="F:alpha-amylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10795">
        <property type="entry name" value="GH57N_MJA1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.110.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052046">
        <property type="entry name" value="GH57_Enzymes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004300">
        <property type="entry name" value="Glyco_hydro_57_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36306:SF1">
        <property type="entry name" value="ALPHA-AMYLASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36306">
        <property type="entry name" value="ALPHA-AMYLASE-RELATED-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03065">
        <property type="entry name" value="Glyco_hydro_57"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="Glycoside hydrolase/deacetylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glycoside hydrolase family 57 N-terminal" evidence="3">
        <location>
            <begin position="5"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="457" mass="53346" checksum="4F016083EAEFEA10" modified="2008-05-20" version="1">MHVVLFLEVHQPRRIRPDLHRVYPRRPSDVEIFYDELNAAIFRRVSERVYRKATKIIYEAALETPGFKVTFSLSGLALEQFRRHAPDVLDLFRALASREAAEFTAQTYYHSLAWFIDREEFREQVEMQRKAVEELIGVRPRAAENTEFIYNNDIACFLHSMGFETVVTEGVDWVLGWRSPNYVYKAWGCDARVLVRNYRLSDDIGFRFGARWWDQWPLTADKYASWLDATPGDVAFIAVDYETFGEHHWPESGIHEFLRWLPREIAKRPRLRFATVSEAASLHPPRDTYDVPPWATISWADERDLSAWLGNEMQRSSFALLTWLYPYAKALGGETLKLWRELSTSDHFYYQATKTGPAGEVHSYFSPYGSAYKAHDVYMAALTALLVEIREKWSAEAAERLVFNDERCFHGHGARICSLKELRNTDAGFKKRHRQDLKRWLTDVFLLSPQEAERILG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y932</accession>
    <name>B1Y932_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit</fullName>
            <ecNumber evidence="8">4.2.1.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1335</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I fumarase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.2" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350680.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y932"/>
    <dbReference type="STRING" id="444157.Tneu_1335"/>
    <dbReference type="GeneID" id="6165149"/>
    <dbReference type="KEGG" id="tne:Tneu_1335"/>
    <dbReference type="eggNOG" id="arCOG04407">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041245_0_0_2"/>
    <dbReference type="OrthoDB" id="371925at2157"/>
    <dbReference type="BRENDA" id="4.2.1.2">
        <property type="organism ID" value="6328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004333">
        <property type="term" value="F:fumarate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051208">
        <property type="entry name" value="Class-I_Fumarase/Tartrate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004646">
        <property type="entry name" value="Fe-S_hydro-lyase_TtdA-typ_cat"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004885">
        <property type="entry name" value="PRK06246.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00722">
        <property type="entry name" value="ttdA_fumA_fumB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30389">
        <property type="entry name" value="FUMARATE HYDRATASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30389:SF17">
        <property type="entry name" value="L(+)-TARTRATE DEHYDRATASE SUBUNIT ALPHA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05681">
        <property type="entry name" value="Fumerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe-S hydro-lyase tartrate dehydratase alpha-type catalytic" evidence="7">
        <location>
            <begin position="8"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="288" mass="31290" checksum="CD84FD099869C76F" modified="2008-05-20" version="1">MLEHVILKAAKEAIIRASVGPALDVASALKRAKEEEEAEAARIQLSAILKNIDLSTDKKAAVCQDTGFPNFYVKLGDRFPVRSKIYDILTQALREVTRELPLRPNTVQPFTEKNPGDNTGVGAPWFEVELFDGDYLEFYYVPKGGGTELPSKAFTLPPGVAMKELPRLVLEAVVDAGPMPCPPVIVGVGIGPSVDIAAKLAKKAAALRPVGSRHPEPEVAKMEEELLRAINKLGIGAHGVGGRITALDVHIEYIYRHPAAFSIGIVFSCWATRRAGARIYPDGRYEIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y957</accession>
    <name>B1Y957_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Roadblock/LAMTOR2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1360</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y957"/>
    <dbReference type="KEGG" id="tne:Tneu_1360"/>
    <dbReference type="eggNOG" id="arCOG05565">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1840665_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="139" mass="15911" checksum="3581F5AFD1323DCD" modified="2008-05-20" version="1">MFVVIYVSPHKTDNKTSAATDLKRVIVTEIINEAIHGVTILDERGVPLIHHLPNTLTAKTLRQVTNLIEIINIIKQNQDESLGEFNYVTVKYANYKVGIFELPNKRGWLIVFVNPLWHIENLLPKIRQFAHKISQSLTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y967</accession>
    <name>B1Y967_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1370</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350715.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y967"/>
    <dbReference type="GeneID" id="6164704"/>
    <dbReference type="KEGG" id="tne:Tneu_1370"/>
    <dbReference type="eggNOG" id="arCOG00934">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062674_0_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040085">
        <property type="entry name" value="MJ0674-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43075">
        <property type="entry name" value="FORMATE LYASE ACTIVATING ENZYME, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G15630)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43075:SF1">
        <property type="entry name" value="FORMATE LYASE ACTIVATING ENZYME, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G15630)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01099">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="154"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="373" mass="43636" checksum="BB83D7A86FBC84F5" modified="2008-05-20" version="1">MSWLLYRPDAVTVWESATVRERLAWYSAVMRNRAPAKYHIAARLEAPRDYREMDGGELWRLHEELGRNFDEEWRRQRERPDPTLAKRELPPASFLDVKIELARRQLRRCMLCERRCGVDRTTRRGACLLDHRPRVASFFHHLGEEAPLVPSGTIFFAGCNFRCVYCQNWDISQHPEAGVEVTSESLAAIQIGLREEGARNINWVGGEPTPNIPYILESMKVLASRGVNVPQLWNSNMYLTPEGLSLILHVMDIWLPDFKYGNDGCALRYSVAPRYWEVTTRNFEVLCRRREDIIVRHLVLPGHLDCCTKPVLRWLAENCPHALVNIMDQYRPDYLVPKLERYRELRRRVSEAEIEEAYRYADSLGLAWREVSR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y978</accession>
    <name>RRP41_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Exosome complex component Rrp41</fullName>
            <ecNumber evidence="1">3.1.13.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rrp41</name>
        <name type="ordered locus">Tneu_1381</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'-&gt;5' exoribonuclease activity. Can also synthesize heteromeric RNA-tails.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Component of the archaeal exosome complex. Forms a hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 heterodimers. The hexameric ring associates with a trimer of Rrp4 and/or Csl4 subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RNase PH family. Rrp41 subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.1.13.-" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350726.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y978"/>
    <dbReference type="SMR" id="B1Y978"/>
    <dbReference type="STRING" id="444157.Tneu_1381"/>
    <dbReference type="GeneID" id="6164727"/>
    <dbReference type="KEGG" id="tne:Tneu_1381"/>
    <dbReference type="eggNOG" id="arCOG01575">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063514_0_0_2"/>
    <dbReference type="OrthoDB" id="24266at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000177">
        <property type="term" value="C:cytoplasmic exosome (RNase complex)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000175">
        <property type="term" value="F:3'-5'-RNA exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010467">
        <property type="term" value="P:gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000956">
        <property type="term" value="P:nuclear-transcribed mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016075">
        <property type="term" value="P:rRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd11366">
        <property type="entry name" value="RNase_PH_archRRP41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.230.70:FF:000004">
        <property type="entry name" value="Exosome complex component Rrp41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.70">
        <property type="entry name" value="GHMP Kinase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00591">
        <property type="entry name" value="Exosome_Rrp41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001247">
        <property type="entry name" value="ExoRNase_PH_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015847">
        <property type="entry name" value="ExoRNase_PH_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036345">
        <property type="entry name" value="ExoRNase_PH_dom2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027408">
        <property type="entry name" value="PNPase/RNase_PH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_Su5_D2-typ_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050080">
        <property type="entry name" value="RNase_PH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011807">
        <property type="entry name" value="Rrp41"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02065">
        <property type="entry name" value="ECX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11953">
        <property type="entry name" value="EXOSOME COMPLEX COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11953:SF0">
        <property type="entry name" value="EXOSOME COMPLEX COMPONENT RRP41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01138">
        <property type="entry name" value="RNase_PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03725">
        <property type="entry name" value="RNase_PH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55666">
        <property type="entry name" value="Ribonuclease PH domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="Ribosomal protein S5 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0269">Exonuclease</keyword>
    <keyword id="KW-0271">Exosome</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0540">Nuclease</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000146960" description="Exosome complex component Rrp41">
        <location>
            <begin position="1"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00591"/>
        </source>
    </evidence>
    <sequence length="246" mass="27028" checksum="E950A4EA6D0E09CE" modified="2008-05-20" version="1">MKKPPVPLLQGGVRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYMPNLRRYTLLQLDGAWGRDKLLEALNLAVKGAEFVYQKARDALKNRYMAIAEEIYGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y996</accession>
    <name>B1Y996_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA-(Apurinic or apyrimidinic site) lyase</fullName>
            <ecNumber evidence="1">4.2.99.18</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1400</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EC" id="4.2.99.18" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350744.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y996"/>
    <dbReference type="STRING" id="444157.Tneu_1400"/>
    <dbReference type="GeneID" id="6165679"/>
    <dbReference type="KEGG" id="tne:Tneu_1400"/>
    <dbReference type="eggNOG" id="arCOG04144">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_085935_0_0_2"/>
    <dbReference type="OrthoDB" id="15106at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140078">
        <property type="term" value="F:class I DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016799">
        <property type="term" value="F:hydrolase activity, hydrolyzing N-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="entry name" value="Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.340.30">
        <property type="entry name" value="Hypothetical protein, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015254">
        <property type="entry name" value="AGOG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09171">
        <property type="entry name" value="AGOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="DNA-glycosylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="267" mass="30849" checksum="2A54FAA23B3113B9" modified="2008-05-20" version="1">MGEDLQLKRVVELLRALGVRGVLRLERQDPQYHAVCRVLQHNGEETAARLAMLNALVSYRLSGKGEEHWGYFGRYFSRRVYDVCAEFLRYVETSPYLRLGVEARKRRVQKACGYLPDLEDLGNVPDRLAALLGADRNQKTLVFTIKILNYVYMCSRGVDRPLPFDIPIPVDYRVAHLTWCAGLIDIPPHEAMRRYREVQEVWNTISREAGIPPLHIDTVLWLAGRAVLYGENIHNIPTEIISAFQWRQECRRLSKRRGETSEERSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y998</accession>
    <name>B1Y998_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phage head-tail adaptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1402</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350746.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y998"/>
    <dbReference type="STRING" id="444157.Tneu_1402"/>
    <dbReference type="GeneID" id="6164967"/>
    <dbReference type="KEGG" id="tne:Tneu_1402"/>
    <dbReference type="eggNOG" id="arCOG00445">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_775270_0_0_2"/>
    <dbReference type="OrthoDB" id="64524at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00198">
        <property type="entry name" value="vWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="entry name" value="von Willebrand factor, type A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13519">
        <property type="entry name" value="VWA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="vWA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="1">
        <location>
            <begin position="199"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="357" mass="39065" checksum="C6A3DE32D420C76C" modified="2008-05-20" version="1">MELADLLVAIHRCLGGISTRSLIYALADVYARAQLGDVDGNKVLEILAQNLAGYLRLSPSEAKRVIEAALSCTPSAEGGYTTAATAAVGREEAPTLAHLVNRYVPVDATPRVKLEVIKRLSLPRDAVEESKANIVARGAGLLHVKSAVRSIRQYTPYSPPSDVDLIKTAVSVARKAALGRPISDGDLYIREYTHVIDKPIYVALDVSGSMKEYLGPSTKLRVAKNAVARYLRQVAQLRGSVSLVLFNVGADFMWTPHPVHRYLGDMLEILRYIYAMGGTELASALELLHNHGVVNDVVVITDGRTSDVEKVLDLAKRFRRLHVIATEKNPFLKQIAKITGGRYRELAPTLDILELHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9C1</accession>
    <name>B1Y9C1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1425</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350769.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9C1"/>
    <dbReference type="STRING" id="444157.Tneu_1425"/>
    <dbReference type="GeneID" id="6164360"/>
    <dbReference type="KEGG" id="tne:Tneu_1425"/>
    <dbReference type="eggNOG" id="arCOG04146">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2079504_0_0_2"/>
    <dbReference type="OrthoDB" id="25082at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="117" mass="13653" checksum="385A43468478C517" modified="2008-05-20" version="1">MEDRLIYSGLRSCYAVNEGMYVEGGRIDVGKAAAHLYLHMRDLERGYTYDHRCRRVEMTPELFEARSRYLVKLCREQGGLDCGEVEKLVNHVLKNFELPPWALDLAMKKIVKISRLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9C9</accession>
    <name>B1Y9C9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">glycine--tRNA ligase</fullName>
            <ecNumber evidence="2">6.1.1.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Diadenosine tetraphosphate synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1433</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.14" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350777.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9C9"/>
    <dbReference type="STRING" id="444157.Tneu_1433"/>
    <dbReference type="GeneID" id="6164574"/>
    <dbReference type="KEGG" id="tne:Tneu_1433"/>
    <dbReference type="eggNOG" id="arCOG00405">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015515_1_0_2"/>
    <dbReference type="OrthoDB" id="6113at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004820">
        <property type="term" value="F:glycine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006426">
        <property type="term" value="P:glycyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00774">
        <property type="entry name" value="GlyRS-like_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.40.230:FF:000005">
        <property type="entry name" value="Glycine--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.40.230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="entry name" value="Anticodon-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="entry name" value="Bira Bifunctional Protein, Domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027031">
        <property type="entry name" value="Gly-tRNA_synthase/POLG2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033731">
        <property type="entry name" value="GlyRS-like_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002315">
        <property type="entry name" value="tRNA-synt_gly"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00389">
        <property type="entry name" value="glyS_dimeric"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003211">
        <property type="entry name" value="PRK04173.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10745:SF0">
        <property type="entry name" value="GLYCINE--TRNA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10745">
        <property type="entry name" value="GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01043">
        <property type="entry name" value="TRNASYNTHGLY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52954">
        <property type="entry name" value="Class II aaRS ABD-related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="Class II aaRS and biotin synthetases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminoacyl-transfer RNA synthetases class-II family profile" evidence="10">
        <location>
            <begin position="5"/>
            <end position="469"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="583" mass="66114" checksum="C39A7BC8A6F17F3C" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9D4</accession>
    <name>B1Y9D4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1438</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350782.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9D4"/>
    <dbReference type="STRING" id="444157.Tneu_1438"/>
    <dbReference type="GeneID" id="6164674"/>
    <dbReference type="KEGG" id="tne:Tneu_1438"/>
    <dbReference type="eggNOG" id="arCOG05581">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_195703_0_0_2"/>
    <dbReference type="OrthoDB" id="23286at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57783">
        <property type="entry name" value="Zinc beta-ribbon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="74" mass="8495" checksum="8DB243E5C7A0C7FC" modified="2008-05-20" version="1">MVAQEFPEDWEYSGGELEKTLKVRATCPYCKHKFEVEIGESWYNIGFSINCPKCGRSFPINMYGEVIGVVEPKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9E9</accession>
    <name>B1Y9E9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1453</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350797.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9E9"/>
    <dbReference type="STRING" id="444157.Tneu_1453"/>
    <dbReference type="GeneID" id="6165693"/>
    <dbReference type="KEGG" id="tne:Tneu_1453"/>
    <dbReference type="eggNOG" id="arCOG04013">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_202283_0_0_2"/>
    <dbReference type="OrthoDB" id="23349at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="73" mass="8523" checksum="1062A0B63FF44A3B" modified="2008-05-20" version="1">MITCPRCGLREWEALPAPYTYRHKGPENTVMIARCKNCGLVFYIFRTPLETFTLEMEKAERKHGAIPHIDLEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9L5</accession>
    <name>B1Y9L5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Circadian clock protein, KaiC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1520</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350863.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9L5"/>
    <dbReference type="STRING" id="444157.Tneu_1520"/>
    <dbReference type="GeneID" id="6165841"/>
    <dbReference type="KEGG" id="tne:Tneu_1520"/>
    <dbReference type="eggNOG" id="arCOG01171">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023669_0_0_2"/>
    <dbReference type="OrthoDB" id="27015at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014774">
        <property type="entry name" value="KaiC-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010624">
        <property type="entry name" value="KaiC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637">
        <property type="entry name" value="UPF0273 PROTEIN TM_0370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637:SF1">
        <property type="entry name" value="UPF0273 PROTEIN TM_0370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06745">
        <property type="entry name" value="ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51146">
        <property type="entry name" value="KAIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KaiC" evidence="3">
        <location>
            <begin position="20"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="281" mass="32887" checksum="A2F6D5F3E780D703" modified="2008-05-20" version="1">MSYQEQYSYDYQDYYPVYDNRAPTGIWYVDQLLQGGFRKGEIYLVAGEAGQGKTIFSLQFLKTGAEMYDEPGLYITIDEPSEDVKRGVRESLGWDLDALESQSKLIFVDLRTHFRTYAKEEKVSADPRDIAKIILEYVKKFGVKRLVIDPIAPLIITSHTDVLWVREYMRELVFQLRRLKDITTLMTSEIPTGENKISRFGVEEYLASGVIKLELMEYRGFVFRVMFIRKMRWTAVRPQKLVFEIYPHYGIYVLDRLENFMKQIDVWYATLGQQAQAPPAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9L7</accession>
    <name>B1Y9L7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1522</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350865.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9L7"/>
    <dbReference type="STRING" id="444157.Tneu_1522"/>
    <dbReference type="GeneID" id="6165952"/>
    <dbReference type="KEGG" id="tne:Tneu_1522"/>
    <dbReference type="eggNOG" id="arCOG00130">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040020_2_0_2"/>
    <dbReference type="OrthoDB" id="117970at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd17370">
        <property type="entry name" value="MFS_MJ1317_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="entry name" value="MFS general substrate transporter like domains"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052425">
        <property type="entry name" value="Uncharacterized_MFS-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42688:SF1">
        <property type="entry name" value="BLR5212 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42688">
        <property type="entry name" value="CONSERVED PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="MFS general substrate transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="34"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="163"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="201"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="228"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="313"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="341"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily (MFS) profile" evidence="7">
        <location>
            <begin position="1"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="365" mass="38337" checksum="DA306CD727C569DC" modified="2008-05-20" version="1">MNLRLILLLGLVSLLADWLYEGMRSVAPQYLVELGASAAFVGFVFGLGDALGYAARFITGPLADRRGGYWLETFLGYAIQVAAVAGLVFARDVWQVAALIFLERFSKALRTPARDAIISAAGGPGARGRAFGIHASLDQIGAIAGALMATLMLYYSYTPRQVFLASLAPGLAALAVLYIAYATSGIKPERRGVRQSADPSVLKFGAAQLFLGLSTIHISLLMYKLSGVPWLASLLYLTAMVAEVPLSLLQGHLYDRDARAILIAPVFSVLLAACYASGALPALFVGAVVYSVVTSYADVVAKAQAARAGGAASLGVVNAMWGLGLLIGGTLYGYLQDVGALHLAFVTAAVSAIISLALLWRQTTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9R3</accession>
    <name>B1Y9R3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type II secretion system protein E</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0027</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349407.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9R3"/>
    <dbReference type="STRING" id="444157.Tneu_0027"/>
    <dbReference type="GeneID" id="6165001"/>
    <dbReference type="KEGG" id="tne:Tneu_0027"/>
    <dbReference type="eggNOG" id="arCOG01818">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005379_2_2_2"/>
    <dbReference type="OrthoDB" id="33500at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050921">
        <property type="entry name" value="T4SS_GSP_E_ATPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30486">
        <property type="entry name" value="TWITCHING MOTILITY PROTEIN PILT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30486:SF6">
        <property type="entry name" value="TYPE IV PILUS RETRACTATION ATPASE PILT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bacterial type II secretion system protein E" evidence="2">
        <location>
            <begin position="147"/>
            <end position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB38985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="494" mass="56384" checksum="E7C8B48804E9D15D" modified="2008-05-20" version="1">MLDFRLDSCRGAVVEEYPSEGARIQIYRSEDGYCYNVAYAFPYSEKVGEYAYKVVEYLTANQIIRPNLTREELGKLIEMAMADIGVPRQLRAAVRYYVQLEAADYSYLTPILYDIKLENVNINGTDSPIYVDHRDYGYNVKTNVIPTNKETLIKVIGRVYAETGRPLNEQYPIQDTYIRLRNGALLRFATAMSGRVARNPPYVSVRIQPPHPISPTELIKRRTISALAMAYLWYLFEHHKSVMVVGGTGTGKTTLLNALLVLLPHKRLAIAEETPEIRMPPSYQNVVMLFTSPMYDYMKNLPGSESAIYLIDLVKYLLRARPDIIVIGESRGREIHELIQGVLTGHGGATTFHAEDIMEVFMRLTGEAMGVSSEHISAFHVTATIKRFEFGRRVTSITEVVWLRAYPYAAPGKIKIKEEEFGLINVGWYDQRSDTVEVDLRRSYWLQKLGGYDEIAERAKFLTSLVERGVFDAEKVGEAVREYYRQKHALLRKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9S2</accession>
    <name>B1Y9S2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1548</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350891.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9S2"/>
    <dbReference type="STRING" id="444157.Tneu_1548"/>
    <dbReference type="GeneID" id="6165413"/>
    <dbReference type="KEGG" id="tne:Tneu_1548"/>
    <dbReference type="eggNOG" id="arCOG00541">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009673_5_1_2"/>
    <dbReference type="OrthoDB" id="40950at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:RNA endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd16295">
        <property type="entry name" value="TTHA0252-CPSF-like_MBL-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="entry name" value="Ribonuclease Z/Hydroxyacylglutathione hydrolase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022712">
        <property type="entry name" value="Beta_Casp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050698">
        <property type="entry name" value="MBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011108">
        <property type="entry name" value="RMMBL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11203">
        <property type="entry name" value="CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11203:SF52">
        <property type="entry name" value="MRNA 3-END PROCESSING FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10996">
        <property type="entry name" value="Beta-Casp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16661">
        <property type="entry name" value="Lactamase_B_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07521">
        <property type="entry name" value="RMMBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01027">
        <property type="entry name" value="Beta-Casp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="Metallo-hydrolase/oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallo-beta-lactamase" evidence="2">
        <location>
            <begin position="13"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="Beta-Casp" evidence="3">
        <location>
            <begin position="231"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM01027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="425" mass="46578" checksum="74E4F51686EFFDC8" modified="2008-05-20" version="1">MRIKFLGGAGEVGRLAVFIKTAANGVLLDYGVSFDAEDKPVFPLHVRPKDLTATFLSHAHLDHSGGLPSLYVSTRTPLYSTPLTMELSDLMYTDAIKLSGYYLPYTQEEVRETMASAVPLTYGEPVEIGRDAVLTAYNAGHIPGSAIGVLEIEGRVVVFTGDFNTVDTNLLRGADLYNLPKAPDVVIMEATYASADHPPREKLEKEFVQAVKEVLDQGGTVLIPSFALGRAQEIMLTLVKHGVNAPIYIDGLARQINQIVGRYPYLLRDPTLYRKALEAAIEVPNTYVRKGAIEEASVIITPAGMLKGGAALYYFKRLAQNRKNGIFLPSFQAPNTPGFEILSKGHAVVDGTLVKVEARLEWFDFSAHAGRREIVHFIKRFSADTRIILVHTEPKAAAPLVRRLAGEGFDNIYVPTEPGEEAVLQ</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9T4</accession>
    <name>CCA_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CCA-adding enzyme</fullName>
            <ecNumber evidence="1">2.7.7.72</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">CCA tRNA nucleotidyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA CCA-pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA adenylyl-/cytidylyl- transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA nucleotidyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA-NT</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">cca</name>
        <name type="ordered locus">Tneu_1560</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. tRNA 3'-terminal CCA addition is required both for tRNA processing and repair. Also involved in tRNA surveillance by mediating tandem CCA addition to generate a CCACCA at the 3' terminus of unstable tRNAs. While stable tRNAs receive only 3'-terminal CCA, unstable tRNAs are marked with CCACCA and rapidly degraded.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a tRNA precursor + 2 CTP + ATP = a tRNA with a 3' CCA end + 3 diphosphate</text>
            <dbReference type="Rhea" id="RHEA:14433"/>
            <dbReference type="Rhea" id="RHEA-COMP:10465"/>
            <dbReference type="Rhea" id="RHEA-COMP:10468"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:74896"/>
            <dbReference type="ChEBI" id="CHEBI:83071"/>
            <dbReference type="EC" id="2.7.7.72"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a tRNA with a 3' CCA end + 2 CTP + ATP = a tRNA with a 3' CCACCA end + 3 diphosphate</text>
            <dbReference type="Rhea" id="RHEA:76235"/>
            <dbReference type="Rhea" id="RHEA-COMP:10468"/>
            <dbReference type="Rhea" id="RHEA-COMP:18655"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:83071"/>
            <dbReference type="ChEBI" id="CHEBI:195187"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:76236"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="1">A single active site specifically recognizes both ATP and CTP and is responsible for their addition.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Archaeal CCA-adding enzyme subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.72" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350903.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9T4"/>
    <dbReference type="SMR" id="B1Y9T4"/>
    <dbReference type="STRING" id="444157.Tneu_1560"/>
    <dbReference type="GeneID" id="6165372"/>
    <dbReference type="KEGG" id="tne:Tneu_1560"/>
    <dbReference type="eggNOG" id="arCOG04249">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044679_1_0_2"/>
    <dbReference type="OrthoDB" id="7378at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004810">
        <property type="term" value="F:CCA tRNA nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0160016">
        <property type="term" value="F:CCACCA tRNA nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042245">
        <property type="term" value="P:RNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001680">
        <property type="term" value="P:tRNA 3'-terminal CCA addition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05400">
        <property type="entry name" value="NT_2-5OAS_ClassI-CCAase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="entry name" value="Beta Polymerase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1410.30">
        <property type="entry name" value="CCA tRNA nucleotidyltransferase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.590">
        <property type="entry name" value="Poly(A) polymerase predicted RNA binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01264">
        <property type="entry name" value="CCA_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048833">
        <property type="entry name" value="CAA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008229">
        <property type="entry name" value="CCA-adding_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042090">
        <property type="entry name" value="CCA_tRNA_nucleotrans_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006116">
        <property type="entry name" value="NT_2-5OAS_ClassI-CCAase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011068">
        <property type="entry name" value="NuclTrfase_I-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015329">
        <property type="entry name" value="tRNA_NucTransf2"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03671">
        <property type="entry name" value="cca_archaeal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39643">
        <property type="entry name" value="CCA-ADDING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39643:SF1">
        <property type="entry name" value="CCA-ADDING ENZYME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21133">
        <property type="entry name" value="CAA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09249">
        <property type="entry name" value="tRNA_NucTransf2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005335">
        <property type="entry name" value="CCA_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="Nucleotidyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55003">
        <property type="entry name" value="PAP/Archaeal CCA-adding enzyme, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81631">
        <property type="entry name" value="PAP/OAS1 substrate-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0692">RNA repair</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <feature type="chain" id="PRO_1000140080" description="CCA-adding enzyme">
        <location>
            <begin position="1"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01264"/>
        </source>
    </evidence>
    <sequence length="415" mass="46967" checksum="8EA04393AB748344" modified="2008-05-20" version="1">MSEVEEVLKEAYKLVTPTPEEERKVAEVGSRVRQWVSEALAGVAAEVDMYGSSARSTWLPGQRDIDIFVVLRDRSIKPEDVVQTLSRYFDGVGVPWSLRYAQHPYLSLYVEGYEVDVVPCYKIAPGERPITAADRSPLHHKFLSERLSEDQRRDVRLLKLFLKSIGVYGAEIKVEGFSGYLTELLVAYYGSFVDVLKAASGWRPYRTYISFTESKTKFKAPLVVVDPVDPNRNVAAAVSLTSMSTFVLASRRFLKKPSLSYFSPPEAPALGVNAVEVVFPYPGESPDVVWGRYKRLGKSLYKHLRECGFKIYRWGVESDEKTYVSIIYVVEDVELPPYVLHRGPPVYDNAIDAFVEKYLREEVVGPFVLGTRAYVIKRRRYTNIGDCIRAKLGGGYAIRINQYGGGLVRKTPWLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9W0</accession>
    <name>B1Y9W0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1587</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350929.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9W0"/>
    <dbReference type="STRING" id="444157.Tneu_1587"/>
    <dbReference type="GeneID" id="6165999"/>
    <dbReference type="KEGG" id="tne:Tneu_1587"/>
    <dbReference type="eggNOG" id="arCOG01021">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_5_1_2"/>
    <dbReference type="OrthoDB" id="21336at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001828">
        <property type="entry name" value="ANF_lig-bd_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051010">
        <property type="entry name" value="BCAA_transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30483:SF40">
        <property type="entry name" value="HISTIDINE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30483">
        <property type="entry name" value="LEUCINE-SPECIFIC-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01094">
        <property type="entry name" value="ANF_receptor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="Periplasmic binding protein-like I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Receptor ligand binding region" evidence="5">
        <location>
            <begin position="61"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="426" mass="46236" checksum="037243E0E807CFFE" modified="2008-05-20" version="1">MSRVYIVALAVVLLIAVGVLLSMQKPATAPTSTTTQNATKVFKLGALLPLTGGFSSYAKLAQCAAELAVDDLNAEYASRGYRFELYVEDTQLDPNVALQKLQALYAKGVHAVHAGLTSREASGEKPFADKNKIVLFSAWSTSSLLAIPNDWLYRIVGTDAKQIRAIGAIIKELGVKKVAIVYRKDPYGEGLYQELQKEAARRGFQVVAAESYDPDPKAFTEAAPQAVRAISAKVRDLVGPDFALVVVSFEDDGQVVLRAIGQDPVLSKARLIGTEGMAFSPVLLQSGGDVMAAGRIIGTANWALPTTPEYKEFYRKFKAKCGAEPITPAPQSYDVIKMLGEIMATIGTDDPDKVRATLEQWGREGRYRGATGVVLLDENGDRANPNFLLWGVALKNGTAAYIEVGYYNFDNDSIVFTTEGRQYFRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9W5</accession>
    <name>B1Y9W5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">NFACT RNA-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1592</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350934.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9W5"/>
    <dbReference type="STRING" id="444157.Tneu_1592"/>
    <dbReference type="GeneID" id="6165341"/>
    <dbReference type="KEGG" id="tne:Tneu_1592"/>
    <dbReference type="eggNOG" id="arCOG01695">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003612_2_1_2"/>
    <dbReference type="OrthoDB" id="10943at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990112">
        <property type="term" value="C:RQC complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043023">
        <property type="term" value="F:ribosomal large subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072344">
        <property type="term" value="P:rescue of stalled ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.310.10">
        <property type="entry name" value="ibrinogen binding protein from staphylococcus aureus domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008532">
        <property type="entry name" value="NFACT_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051608">
        <property type="entry name" value="RQC_Subunit_NEMF"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041120">
        <property type="entry name" value="RqcH_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15239">
        <property type="entry name" value="NUCLEAR EXPORT MEDIATOR FACTOR NEMF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15239:SF6">
        <property type="entry name" value="RIBOSOME QUALITY CONTROL COMPLEX SUBUNIT NEMF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05670">
        <property type="entry name" value="NFACT-R_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05833">
        <property type="entry name" value="NFACT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NFACT RNA-binding" evidence="2">
        <location>
            <begin position="406"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="262"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="349"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="613" mass="68481" checksum="A57323F6860009C3" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9W8</accession>
    <name>B1Y9W8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF362 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1595</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350937.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9W8"/>
    <dbReference type="STRING" id="444157.Tneu_1595"/>
    <dbReference type="GeneID" id="6166293"/>
    <dbReference type="KEGG" id="tne:Tneu_1595"/>
    <dbReference type="eggNOG" id="arCOG02451">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1056092_0_0_2"/>
    <dbReference type="OrthoDB" id="24078at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007160">
        <property type="entry name" value="DUF362"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04015">
        <property type="entry name" value="DUF362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF362" evidence="1">
        <location>
            <begin position="36"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="265" mass="29387" checksum="4799A699F3A95919" modified="2008-05-20" version="1">MVEAYPADADLPIPKRDALVVLAVHSYIPSQSNPRAELVEMLLRSLQGRDVSITFSMPKSYFEKAVKIMGLEKLAASYGAKIIQPQQHATYRLELETPRGGKIAVKAIGAAFDESLLKIVVSIPVSHPQTILYLTMPAAALQILDPKDAQGLYEGFRALYKYIAEIYRLEKNTFCIADGKFVIEGDGPIKGFQRYWGIAVVGENCAEVDYATAQALGVSPEDLGYLYFYYGGVWPKLKLPQLLEKNKIQVKLTSNVGILLSWKRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="98" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Z2</accession>
    <name>B1Y9Z2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">AAA family ATPase, CDC48 subfamily</fullName>
            <ecNumber evidence="8">3.6.4.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1619</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AAA ATPase family. CDC48 subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.3" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350961.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Z2"/>
    <dbReference type="STRING" id="444157.Tneu_1619"/>
    <dbReference type="GeneID" id="6165727"/>
    <dbReference type="KEGG" id="tne:Tneu_1619"/>
    <dbReference type="eggNOG" id="arCOG01308">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000688_12_2_2"/>
    <dbReference type="OrthoDB" id="77269at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd19511">
        <property type="entry name" value="RecA-like_CDC48_r2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.40.20:FF:000007">
        <property type="entry name" value="AAA family ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.60:FF:000057">
        <property type="entry name" value="AAA family ATPase, CDC48 subfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000018">
        <property type="entry name" value="Cell division control 48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.8.60:FF:000038">
        <property type="entry name" value="spermatogenesis-associated protein 5-like protein 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000012">
        <property type="entry name" value="Transitional endoplasmic reticulum ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005938">
        <property type="entry name" value="AAA_ATPase_CDC48"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050168">
        <property type="entry name" value="AAA_ATPase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004201">
        <property type="entry name" value="Cdc48_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029067">
        <property type="entry name" value="CDC48_domain_2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003338">
        <property type="entry name" value="CDC4_N-term_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01243">
        <property type="entry name" value="CDC48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23077:SF199">
        <property type="entry name" value="AAA FAMILY ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23077">
        <property type="entry name" value="AAA-FAMILY ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02933">
        <property type="entry name" value="CDC48_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02359">
        <property type="entry name" value="CDC48_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01072">
        <property type="entry name" value="CDC48_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01073">
        <property type="entry name" value="CDC48_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="ADC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54585">
        <property type="entry name" value="Cdc48 domain 2-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="CDC48 N-terminal subdomain" evidence="7">
        <location>
            <begin position="5"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="CDC48" evidence="6">
        <location>
            <begin position="104"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="domain" description="AAA+ ATPase" evidence="5">
        <location>
            <begin position="209"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="domain" description="AAA+ ATPase" evidence="5">
        <location>
            <begin position="497"/>
            <end position="635"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="737" mass="81813" checksum="AA54518EE8FEEE38" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA75</accession>
    <name>B1YA75_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Sulfurtransferase TusA family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0091</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349470.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA75"/>
    <dbReference type="STRING" id="444157.Tneu_0091"/>
    <dbReference type="GeneID" id="6164483"/>
    <dbReference type="KEGG" id="tne:Tneu_0091"/>
    <dbReference type="eggNOG" id="arCOG07004">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2695978_0_0_2"/>
    <dbReference type="OrthoDB" id="27327at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036868">
        <property type="entry name" value="TusA-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64307">
        <property type="entry name" value="SirA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="73" mass="8019" checksum="DC7E01D088D0F80E" modified="2008-05-20" version="1">MRRYRVEGPCPELGMVLAKMTAELAPGEEAVVESRWRYVATDLAKSAGLVRMSVVDVKEGPGGVFEIRVRKLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA80</accession>
    <name>B1YA80_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Metal-dependent carboxypeptidase</fullName>
            <ecNumber evidence="1">3.4.17.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0096</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Release of a C-terminal amino acid with broad specificity, except for -Pro.</text>
            <dbReference type="EC" id="3.4.17.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="2">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M32 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.17.19" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349475.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA80"/>
    <dbReference type="STRING" id="444157.Tneu_0096"/>
    <dbReference type="MEROPS" id="M32.002"/>
    <dbReference type="GeneID" id="6164580"/>
    <dbReference type="KEGG" id="tne:Tneu_0096"/>
    <dbReference type="eggNOG" id="arCOG04247">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032916_1_1_2"/>
    <dbReference type="OrthoDB" id="7244at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004181">
        <property type="term" value="F:metallocarboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06460">
        <property type="entry name" value="M32_Taq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1370.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001333">
        <property type="entry name" value="Peptidase_M32_Taq"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34217:SF1">
        <property type="entry name" value="CARBOXYPEPTIDASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34217">
        <property type="entry name" value="METAL-DEPENDENT CARBOXYPEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02074">
        <property type="entry name" value="Peptidase_M32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006615">
        <property type="entry name" value="Zn_crbxpep_Taq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00998">
        <property type="entry name" value="CRBOXYPTASET"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55486">
        <property type="entry name" value="Metalloproteases ('zincins'), catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52034">
        <property type="entry name" value="PEPTIDASE_M32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="1 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="3">
        <location>
            <position position="266"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="265"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="269"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="295"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006615"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006615-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR006615-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="491" mass="56714" checksum="981FF03BBAD997A8" modified="2008-05-20" version="1">MIRSQTVKEILDHYRVIWALGHAQALMGWDSETYMPEEGVKGRAAARAEIAQLIQRFMLDEKFVKLLDKAEEERDLTDVERGIVRVLKRDLRFYTRVPPEVVKELAKVTSEAFVAWRGAKEKARFDLFAPYLEKIVELSRVVAEKLGYEEHPYDALLDLYEEGLTSRDVESIFSTLEPGIRSLLNKLEARGWPRSHPLEEAPYDRPALEAAIAEVLDLLGYPRGRFRVDVSPHPFTIGIATPYDVRITVRYRGVDFREPLFSALHEYGHALYELNVAEELAMTPVGTGVSLGVHESQSRFVENVVGRSREFIQRISPILRRRLPLLSKYGDEDLFYYFNLVRPSLIRTEADEVTYNLHILLRYRLERLMITGEVKVSQLPELWNSEMERLLGVKPRNDAEGVLQDVHWSHGSIGYFPTYTLGNVVAAMIYYKHGNVRGLVSEGNFAAVKEYLREKIHRWGSVYPPKELLRRSFGEAYNAGYLVKYLEEKYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA82</accession>
    <name>B1YA82_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phosphopantetheine adenylyltransferase</fullName>
            <ecNumber evidence="7">2.7.7.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Dephospho-CoA pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Pantetheine-phosphate adenylyltransferase</fullName>
            <shortName evidence="7">PPAT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">coaD</name>
        <name evidence="9" type="ordered locus">Tneu_0098</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(R)-4'-phosphopantetheine + ATP + H(+) = 3'-dephospho-CoA + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:19801"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57328"/>
            <dbReference type="ChEBI" id="CHEBI:61723"/>
            <dbReference type="EC" id="2.7.7.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cofactor biosynthesis; coenzyme A biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the eukaryotic CoaD family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.3" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349477.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA82"/>
    <dbReference type="STRING" id="444157.Tneu_0098"/>
    <dbReference type="GeneID" id="6164652"/>
    <dbReference type="KEGG" id="tne:Tneu_0098"/>
    <dbReference type="eggNOG" id="arCOG01223">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035272_5_0_2"/>
    <dbReference type="OrthoDB" id="53228at2157"/>
    <dbReference type="UniPathway" id="UPA00241"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004595">
        <property type="term" value="F:pantetheine-phosphate adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00647">
        <property type="entry name" value="PPAT_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050385">
        <property type="entry name" value="Archaeal_FAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023540">
        <property type="entry name" value="PPAT_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001985">
        <property type="entry name" value="PRK00777.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43793">
        <property type="entry name" value="FAD SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43793:SF1">
        <property type="entry name" value="FAD SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 7" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="1 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 7" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cytidyltransferase-like" evidence="8">
        <location>
            <begin position="9"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="153" mass="16963" checksum="0C068AA15D1AA0CF" modified="2008-05-20" version="1">MRLKFRTVVLGGTFDTLHSGHVKLLATATLIGERILIGLTSDSFASTYKQYKVRPLSVRLGNVKNLMSLIAPDREVVYTEIDNPYGPAVELPSLDAIVASIETAPRALEINEERARRGLRPMEIVVISTVRDGFGHVLSSTYIRRALEKLEAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAA0</accession>
    <name>B1YAA0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0116</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349495.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAA0"/>
    <dbReference type="STRING" id="444157.Tneu_0116"/>
    <dbReference type="GeneID" id="6165362"/>
    <dbReference type="KEGG" id="tne:Tneu_0116"/>
    <dbReference type="eggNOG" id="arCOG05474">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1212653_0_0_2"/>
    <dbReference type="OrthoDB" id="29003at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="222" mass="23752" checksum="A1DB4680FAF411EE" modified="2008-05-20" version="1">MQSLELLVLVSFSLLIVFAAVPYIWQLASATMAQWEARQFVTFMSTLADSMESDFGMAGVVRSYYMPSLVFGAFSVRSYPMYLVCQSTGAGVTFNSLYIWYNSSYILGGAKPVRGERSVAPAPLGQPLVAVNATGMGYVLFTGPVYVPGQSTVLYVVNATVSPLSGYAITYRVVGVSDGYSNDRLRIDCPGGVFKVGLVGGPSYLYNLGTTVVVVSTQVAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAA5</accession>
    <name>B1YAA5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP1 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0121</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349500.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAA5"/>
    <dbReference type="GeneID" id="6166016"/>
    <dbReference type="KEGG" id="tne:Tneu_0121"/>
    <dbReference type="eggNOG" id="arCOG03709">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_118419_1_0_2"/>
    <dbReference type="OrthoDB" id="27131at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010268">
        <property type="entry name" value="PaREP1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05942">
        <property type="entry name" value="PaREP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="173" mass="19394" checksum="832D8BDC694AC56D" modified="2008-05-20" version="1">MTFDAWPLPKPWRDVKQYAELRTEEAVLEAELALRFLEQGLVRNAAGKAWQAWKALLAAAAAQNREAIASRFGGVVKDKTGEARQKSDIIIAYMPTTGAREVASILADIYGVEMVYLTDLAINLHEFQYNGLDPEGVASRYTDLRDVEKDIRHLAQKTKEWAKKIQQPPPGDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAE9</accession>
    <name>B1YAE9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transcription elongation factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1676</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351017.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAE9"/>
    <dbReference type="STRING" id="444157.Tneu_1676"/>
    <dbReference type="GeneID" id="6165327"/>
    <dbReference type="KEGG" id="tne:Tneu_1676"/>
    <dbReference type="eggNOG" id="arCOG04136">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_165872_0_0_2"/>
    <dbReference type="OrthoDB" id="15334at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.25.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007808">
        <property type="entry name" value="Elf1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038567">
        <property type="entry name" value="T_Elf1_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF011482">
        <property type="entry name" value="PRK14892.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05129">
        <property type="entry name" value="Zn_ribbon_Elf1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57783">
        <property type="entry name" value="Zinc beta-ribbon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="96" mass="10738" checksum="C05AF71D8364535C" modified="2008-05-20" version="1">MGRRRKTRKVLLRPKKTLPKIFTCPHCGAQLVTVKKTEDGYLVVCGNCGLRHEFEERPGWMPVDYYNAFVDLYLEGKIAPPEKAKSGEAGGGDEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAF5</accession>
    <name>B1YAF5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DNA polymerase sliding clamp</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Proliferating cell nuclear antigen homolog</fullName>
            <shortName evidence="4">PCNA</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">pcn</name>
        <name evidence="9" type="ordered locus">Tneu_1682</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication.</text>
    </comment>
    <comment type="function">
        <text evidence="6">Sliding clamp subunit. Responsible for tethering the catalytic subunit of DNA polymerase to DNA during high-speed replication.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homotrimer. The subunits circularize to form a toroid; DNA passes through its center. Replication factor C (RFC) is required to load the toroid on the DNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the PCNA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351023.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAF5"/>
    <dbReference type="STRING" id="444157.Tneu_1682"/>
    <dbReference type="GeneID" id="6165226"/>
    <dbReference type="KEGG" id="tne:Tneu_1682"/>
    <dbReference type="eggNOG" id="arCOG00488">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043978_1_0_2"/>
    <dbReference type="OrthoDB" id="14749at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030337">
        <property type="term" value="F:DNA polymerase processivity factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006272">
        <property type="term" value="P:leading strand elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006275">
        <property type="term" value="P:regulation of DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00577">
        <property type="entry name" value="PCNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.70.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00317">
        <property type="entry name" value="DNApol_clamp_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046938">
        <property type="entry name" value="DNA_clamp_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000730">
        <property type="entry name" value="Pr_cel_nuc_antig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022649">
        <property type="entry name" value="Pr_cel_nuc_antig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022659">
        <property type="entry name" value="Pr_cel_nuc_antig_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022648">
        <property type="entry name" value="Pr_cel_nuc_antig_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00590">
        <property type="entry name" value="pcna"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002221">
        <property type="entry name" value="PRK01115.1-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11352">
        <property type="entry name" value="PROLIFERATING CELL NUCLEAR ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11352:SF0">
        <property type="entry name" value="PROLIFERATING CELL NUCLEAR ANTIGEN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02747">
        <property type="entry name" value="PCNA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00705">
        <property type="entry name" value="PCNA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00339">
        <property type="entry name" value="PCNACYCLIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55979">
        <property type="entry name" value="DNA clamp"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01251">
        <property type="entry name" value="PCNA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4 5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="3 4 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Proliferating cell nuclear antigen PCNA N-terminal" evidence="7">
        <location>
            <begin position="15"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="Proliferating cell nuclear antigen PCNA C-terminal" evidence="8">
        <location>
            <begin position="127"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="249" mass="27531" checksum="C5A2533BAFA1571F" modified="2008-05-20" version="1">MSKHVITYLDAKEFAYIVDAVSVLVEEANFVVRSDGLYLRALDPSRTAMVDLSIPKEAFDEFPEVEELRVGVNFKDLKKILRRVKKGDKISMEVEEGRIRIKLVGKSVRSITLPSIEVVGEELPTPKVVYTAMVKTASDVLASAIKDADAVADEVKFEANEEALVIGATSDKGEVEVRLDKNSELVYEFDVKEPASARYSLEYLVDMVGRTSKISDIVTIELATAKPLLLTFDIPAGGKIAYFLAPRVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAF7</accession>
    <name>B1YAF7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Gins51 C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1684</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351025.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAF7"/>
    <dbReference type="STRING" id="444157.Tneu_1684"/>
    <dbReference type="GeneID" id="6165206"/>
    <dbReference type="KEGG" id="tne:Tneu_1684"/>
    <dbReference type="eggNOG" id="arCOG00551">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1631709_0_0_2"/>
    <dbReference type="OrthoDB" id="86040at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd21695">
        <property type="entry name" value="GINS_B_archaea_Gins51"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.5.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054314">
        <property type="entry name" value="Gins51_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22090">
        <property type="entry name" value="Gins51_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gins51 C-terminal" evidence="1">
        <location>
            <begin position="112"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF22090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="158" mass="18021" checksum="10674EA5DD566F03" modified="2008-05-20" version="1">MIEKLRLWLSAEVNSRFLTDPPYGSYAEAAEEFARELQRSPLPQALQDRVKEQAASMLLTIMEIRTRKILWELSQGRVPGRMTAEEERLVGPIAKIKQAGPQRRRAQDYVVVQFLVPHPAIVTEEFVQIGPFAKGDLAKLPARDARDLEERGVARRFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAG8</accession>
    <name>B1YAG8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1695</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAG8"/>
    <dbReference type="KEGG" id="tne:Tneu_1695"/>
    <dbReference type="eggNOG" id="arCOG09839">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_777596_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="105"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="356" mass="39409" checksum="04853BBC4E811AF8" modified="2008-05-20" version="1">MHHGLNDASQAREGHQKPPPVRGGKRHRHREPPKATIDKDIRRHAGENTTHNNHKNTGRKAPRDAKGKTPRKTTRPHPNRHQPLKVCTGGTSSIKSLVSAIAMRLGVAVVAAALALALAVYIAAAAGSDSKAQPAQSASDSQQYTQDAAVEGLTIGGNDPFWYMEGRLPKKMNIEVDDVVRRILERPVRAPGPARGEFQIDERLREWFHNDTAGREVYERCYGGMFVDAARIYIVVTDRACGEKIRRAVEDLASRYGTELVILKGKYTYRQLSQWADALFHRVKEGLEDRLKQICGKYVVTMLMVDQATNQIVVGINPDCTSQAVVKEIAKALDELGIPKDAVVLEKFPGFVLLSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="43" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAG9</accession>
    <name>B1YAG9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1697</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351037.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAG9"/>
    <dbReference type="GeneID" id="6165298"/>
    <dbReference type="KEGG" id="tne:Tneu_1697"/>
    <dbReference type="eggNOG" id="arCOG10105">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_619148_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="447" mass="50876" checksum="9E13DA8641084E9D" modified="2008-05-20" version="1">MIELPRPIVDKLLMAYRANNYLGVEAMGLPIPPVTLEYPLFRLDGELPEDVYSVLDHVGLSADVYYGSRVGYIPSIDLDPLKLFISHPTPSLYIESSELRVDPRSGMYIGPVRALKVDTNPPAPKWPGLKLIHDYIEYEDVLDYVELSSLLLLYNERMPDGNMYFYTWAYNAVTLLSLFDNPEAGDLLRERTPELAPVWDRLEELARETRVEYSEEDMRFFEAAGVGVEGAAFEFGPVITPKGRISIPDAIVKALYKKLKGEGIDTDAGMDFGMRFGCAAGLGYVIFDEMSDTVDECIDKPRLKKAYRKWRWEFFEKWDYIAELTLLLPGSYCVCMLGEDPEVPEDEWPASLAKSVEFAVRRYRPGERVGECMCFDASCRGAELDLRRLEELLDVYLGRLHRAIWRGLAVVERGVKAWEKSGMLKATTEEELRWIADKIYGNIPGLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAI5</accession>
    <name>B1YAI5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1714</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351053.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAI5"/>
    <dbReference type="STRING" id="444157.Tneu_1714"/>
    <dbReference type="GeneID" id="6165883"/>
    <dbReference type="KEGG" id="tne:Tneu_1714"/>
    <dbReference type="eggNOG" id="arCOG05654">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1438161_0_0_2"/>
    <dbReference type="OrthoDB" id="24138at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="209" mass="23660" checksum="4BD1CE489F164991" modified="2008-05-20" version="1">MRKALFIATTSLTRSGVEACADFLEATAPRLGEFWLPLPRELCAGRPVDLGPLERYLEPLLALYHEVEADWRCYGSAEDLRRREMATAKLAALVIKARVYGKIDLREWDTYFSRPPSPPPTPSLVFGTVGGEELVICGAHPPNPIEAAHELWHTLTPQKKTELATWITKFIAHIVDSINLDEAYHKLIREGWENTYKTILGNSRPQPKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAK9</accession>
    <name>B1YAK9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Fe-S oxidoreductase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1740</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351077.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAK9"/>
    <dbReference type="STRING" id="444157.Tneu_1740"/>
    <dbReference type="GeneID" id="6165279"/>
    <dbReference type="KEGG" id="tne:Tneu_1740"/>
    <dbReference type="eggNOG" id="arCOG02579">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_126379_1_0_2"/>
    <dbReference type="OrthoDB" id="36424at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005358">
        <property type="entry name" value="Puta_zinc/iron-chelating_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35866">
        <property type="entry name" value="PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35866:SF2">
        <property type="entry name" value="YKGJ FAMILY CYSTEINE CLUSTER PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03692">
        <property type="entry name" value="CxxCxxCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="137" mass="16212" checksum="D0A6DE15C56A7187" modified="2008-05-20" version="1">MWKNASWFEVKFRCIKCGICCIGTEMELLADDIARITSRGYKLEEFAEERDGVYRLKNVDGHCVFYDPSTRSCRIYDIRPVGCRLYPLIYDGEKVDVDRTCPTWDTVPQEEIKRLGRYVVEFLREAELTRIKIRLRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAL0</accession>
    <name>B1YAL0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UPF0056 membrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0132</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Cell membrane</location>
            <topology evidence="1 7">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the UPF0056 (MarC) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349510.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAL0"/>
    <dbReference type="STRING" id="444157.Tneu_0132"/>
    <dbReference type="GeneID" id="6166196"/>
    <dbReference type="KEGG" id="tne:Tneu_0132"/>
    <dbReference type="eggNOG" id="arCOG01997">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079909_2_1_2"/>
    <dbReference type="OrthoDB" id="10856at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002771">
        <property type="entry name" value="Multi_antbiot-R_MarC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33508">
        <property type="entry name" value="UPF0056 MEMBRANE PROTEIN YHCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33508:SF1">
        <property type="entry name" value="UPF0056 MEMBRANE PROTEIN YHCE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01914">
        <property type="entry name" value="MarC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="42"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="73"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="106"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="133"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="167"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="198" mass="20644" checksum="E061FD06FE2215F2" modified="2008-05-20" version="1">MSITEFFALVGQLYAIMNPIGKLAIVGPLASERPQFVKKVTTVVVFAVYILTSLFALSGGAILAAFGVSLDSFRIAGGIMLMAISIMTLMSGSYVGKVEIAEEQAVVPLATPLIVGPGTITALIIISSTYGPLWALAVAASASTAVAATLLLGIRAVRYLGATPLRLLGRFMSLVIASVATEMIITGIRNQIANLFTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAV3</accession>
    <name>B1YAV3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0227</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349603.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAV3"/>
    <dbReference type="STRING" id="444157.Tneu_0227"/>
    <dbReference type="GeneID" id="6164412"/>
    <dbReference type="KEGG" id="tne:Tneu_0227"/>
    <dbReference type="eggNOG" id="arCOG01772">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055583_0_0_2"/>
    <dbReference type="OrthoDB" id="26618at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016861">
        <property type="term" value="F:intramolecular oxidoreductase activity, interconverting aldoses and ketoses"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005996">
        <property type="term" value="P:monosaccharide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009015">
        <property type="entry name" value="Fucose_isomerase_N/cen_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36120">
        <property type="entry name" value="FUCOSE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36120:SF2">
        <property type="entry name" value="FUCOSE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53743">
        <property type="entry name" value="FucI/AraA N-terminal and middle domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="375" mass="39810" checksum="E5D97E49A5A0B6E4" modified="2008-05-20" version="1">MAYLLTSAVHGADFIAEVERYVAKYISLKDPARPEPERFPVIIHGTGGTTAQALELVERAGARGAVLVGFGEHNSFASALHAKAELEAAGRTAVVYHCPTYAECGPALAKAARVSAAASSLIGAKAVLIGSKTKQADLVSERFGWSVEVVPLADFESTVANSEPDSEALSLFGDERVAKVASALRRLAAGSHLVAIQCFPFLMKAGYTPCPALALLNARGLTAACEGDLSAGFAMLLLRRLAGGSSWIANVVESRGEMATFAHCTVSLDLVERWWSMPHFESGLPYGIAGELRRGVYTAVSISPRFEKAAVGRVYVERSGNYLQSACRTQATVRFGRPVRLEEEAPANHHVFAPGDVAAEAAAVLKLLSFSTVIY</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAX4</accession>
    <name>SYE_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glutamate--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Glutamyl-tRNA synthetase</fullName>
            <shortName evidence="1">GluRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">gltX</name>
        <name type="ordered locus">Tneu_1756</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>tRNA(Glu) + L-glutamate + ATP = L-glutamyl-tRNA(Glu) + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23540"/>
            <dbReference type="Rhea" id="RHEA-COMP:9663"/>
            <dbReference type="Rhea" id="RHEA-COMP:9680"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.17"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.17" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351093.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAX4"/>
    <dbReference type="SMR" id="B1YAX4"/>
    <dbReference type="STRING" id="444157.Tneu_1756"/>
    <dbReference type="GeneID" id="6165414"/>
    <dbReference type="KEGG" id="tne:Tneu_1756"/>
    <dbReference type="eggNOG" id="arCOG04302">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001882_1_3_2"/>
    <dbReference type="OrthoDB" id="10470at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004818">
        <property type="term" value="F:glutamate-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043604">
        <property type="term" value="P:amide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006424">
        <property type="term" value="P:glutamyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.240.10">
        <property type="entry name" value="Ribosomal Protein L25, Chain P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02076">
        <property type="entry name" value="Glu_tRNA_synth_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050132">
        <property type="entry name" value="Gln/Glu-tRNA_Ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004526">
        <property type="entry name" value="Glu-tRNA-synth_arc/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000924">
        <property type="entry name" value="Glu/Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020058">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020059">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_codon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020056">
        <property type="entry name" value="Rbsml_bL25/Gln-tRNA_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011035">
        <property type="entry name" value="Ribosomal_bL25/Gln-tRNA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00463">
        <property type="entry name" value="gltX_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003169">
        <property type="entry name" value="PRK04156.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43097:SF5">
        <property type="entry name" value="GLUTAMATE--TRNA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43097">
        <property type="entry name" value="GLUTAMINE-TRNA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00749">
        <property type="entry name" value="tRNA-synt_1c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03950">
        <property type="entry name" value="tRNA-synt_1c_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00987">
        <property type="entry name" value="TRNASYNTHGLU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50715">
        <property type="entry name" value="Ribosomal protein L25-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000090116" description="Glutamate--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="570"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="1">
        <location>
            <begin position="107"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02076"/>
        </source>
    </evidence>
    <sequence length="570" mass="65052" checksum="A8CEDDCB043E24C2" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAY1</accession>
    <name>B1YAY1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF309 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1763</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351100.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAY1"/>
    <dbReference type="STRING" id="444157.Tneu_1763"/>
    <dbReference type="GeneID" id="6165581"/>
    <dbReference type="KEGG" id="tne:Tneu_1763"/>
    <dbReference type="eggNOG" id="arCOG03705">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1465195_0_0_2"/>
    <dbReference type="OrthoDB" id="28179at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3450.10">
        <property type="entry name" value="TTHA0068-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005500">
        <property type="entry name" value="DUF309"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023203">
        <property type="entry name" value="TTHA0068_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03745">
        <property type="entry name" value="DUF309"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140663">
        <property type="entry name" value="TTHA0068-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="174" mass="19765" checksum="09B4764B01BDBF4D" modified="2008-05-20" version="1">MRVLIIAENPGFTPSQRRHLIRRLRERLRVITVRIATRHVEIDVDAEDPPAAAAYVEQAVGRVLEVAAPEEGGGFIRYVELFNRERFWEAHGALERIWMETRDEAVRGLILLAAAFVKLQEGLPERFEHMLREALGLLRDVSCIKAEEIKAKAEKALMDKTPFKIECSTPSPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB11</accession>
    <name>B1YB11_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">NADH dehydrogenase (Quinone)</fullName>
            <ecNumber evidence="6">1.6.5.11</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1793</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="1.6.5.11" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351130.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB11"/>
    <dbReference type="STRING" id="444157.Tneu_1793"/>
    <dbReference type="GeneID" id="6165128"/>
    <dbReference type="KEGG" id="tne:Tneu_1793"/>
    <dbReference type="eggNOG" id="arCOG01546">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015134_0_2_2"/>
    <dbReference type="OrthoDB" id="15253at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003954">
        <property type="term" value="F:NADH dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009060">
        <property type="term" value="P:aerobic respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01350">
        <property type="entry name" value="NDH1_NuoH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001694">
        <property type="entry name" value="NADH_UbQ_OxRdtase_su1/FPO"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004741">
        <property type="entry name" value="PRK06076.1-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11432">
        <property type="entry name" value="NADH DEHYDROGENASE SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11432:SF3">
        <property type="entry name" value="NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00146">
        <property type="entry name" value="NADHdh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="49"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="77"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="110"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="146"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="187"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="229"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="259"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="294"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="320" mass="34596" checksum="C961202E3623A9A6" modified="2008-05-20" version="1">MSIPMDILAAVVFPGVLGVFGFLVVAIWLERKLVARIQWRYGPLYVSKSVGGFLQPIADLVKLVFSELVLPAHTNRLLFAATPIFLFFAEAVPLIFIAPAPGLVIAYQPYGLAIALVLVLLVAVLVVTMAWTEADKFTYIGAVREILLTAAYEVPLLLAALAMFILYKSADPYGVVEAQSGLWGVLLNPLAFAVYLVALLMSTTRLPFEIPEAEPEVVLGPYTEYGSTLFIYAFGANYVKLYTLSLLGAVLFLGGWAPAAGLLGAAVTATKMAVFVLPALLVRAVYPRYRIDQALRLGWGKLLALSAAAVAWSIAVDLLW</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB29</accession>
    <name>DAPAL_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName>Uncharacterized DapA-like lyase Tneu_1812</fullName>
            <ecNumber>4.-.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name type="primary">dapAL</name>
        <name type="ordered locus">Tneu_1812</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DapA family.</text>
    </comment>
    <dbReference type="EC" id="4.-.-.-"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351148.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB29"/>
    <dbReference type="SMR" id="B1YB29"/>
    <dbReference type="STRING" id="444157.Tneu_1812"/>
    <dbReference type="GeneID" id="6164478"/>
    <dbReference type="KEGG" id="tne:Tneu_1812"/>
    <dbReference type="eggNOG" id="arCOG04172">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049343_5_1_2"/>
    <dbReference type="OrthoDB" id="33636at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008675">
        <property type="term" value="F:2-dehydro-3-deoxy-phosphogluconate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008840">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00408">
        <property type="entry name" value="DHDPS-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002220">
        <property type="entry name" value="DapA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128:SF66">
        <property type="entry name" value="4-HYDROXY-2-OXOGLUTARATE ALDOLASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128">
        <property type="entry name" value="DIHYDRODIPICOLINATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00701">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001365">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00146">
        <property type="entry name" value="DHPICSNTHASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01130">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51569">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0704">Schiff base</keyword>
    <feature type="chain" id="PRO_1000124073" description="Uncharacterized DapA-like lyase Tneu_1812">
        <location>
            <begin position="1"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="1">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="1">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="1">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000250" key="1"/>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="301" mass="33177" checksum="8FE491F6C485BF98" modified="2008-05-20" version="1">MRIEGVVVATVTPFAKDGVNYEGLRALLSKIVEEGYQGVFPTSSTGEVTKLTFEERVKAMEVAKEVAGGRALVVAGTGTGDHLSTIEIARRYRDVGVDVLLITPPYYIQYDWAAVYAFYKRVLDKVDMPVVLYTIPLATGYNIPVEVFELVANEYSQVVGVKDSSGDFRYHLDLIHLLGKRLSVLQGLDLLFVPSLLMGAHGGVLAGPNFLGRITLEQYRLVKEGKTAEAVALHNKLMPLWRFMGGCGLVGKLGGKWPTLYKVATQMVRGIDMGPPREPLPPIDDRDRKELEKLLKDLGLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB48</accession>
    <name>B1YB48_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1831</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351167.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB48"/>
    <dbReference type="STRING" id="444157.Tneu_1831"/>
    <dbReference type="GeneID" id="6164694"/>
    <dbReference type="KEGG" id="tne:Tneu_1831"/>
    <dbReference type="eggNOG" id="arCOG06071">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_160446_0_0_2"/>
    <dbReference type="OrthoDB" id="28012at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="103" mass="11183" checksum="FE6CA3CF088605CF" modified="2008-05-20" version="1">MVKKLVRVVAAVPTGHRHLRMLLYFDDGDVALLTEALAAGLARAYLDVVGHPTRRGVVMCVKDVEGKPGYAKTQLVECGGEEEAVQEVDAALERLLSAKDQPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB51</accession>
    <name>B1YB51_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9">Argininosuccinate synthase</fullName>
            <ecNumber evidence="3 9">6.3.4.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Citrulline--aspartate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">argG</name>
        <name evidence="12" type="ordered locus">Tneu_1834</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-citrulline + L-aspartate + ATP = 2-(N(omega)-L-arginino)succinate + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10932"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57472"/>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 9">Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 2/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 9">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the argininosuccinate synthase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.5" evidence="3 9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB51"/>
    <dbReference type="STRING" id="444157.Tneu_1834"/>
    <dbReference type="KEGG" id="tne:Tneu_1834"/>
    <dbReference type="eggNOG" id="arCOG00112">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032784_4_2_2"/>
    <dbReference type="OrthoDB" id="5877at2157"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004055">
        <property type="term" value="F:argininosuccinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000053">
        <property type="term" value="P:argininosuccinate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:L-arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000050">
        <property type="term" value="P:urea cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01999">
        <property type="entry name" value="ASS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.620:FF:000019">
        <property type="entry name" value="Argininosuccinate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.1260.10:FF:000007">
        <property type="entry name" value="Argininosuccinate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1260.10">
        <property type="entry name" value="Argininosuccinate synthetase, chain A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00005">
        <property type="entry name" value="Arg_succ_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048268">
        <property type="entry name" value="Arginosuc_syn_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048267">
        <property type="entry name" value="Arginosuc_syn_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001518">
        <property type="entry name" value="Arginosuc_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018223">
        <property type="entry name" value="Arginosuc_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023434">
        <property type="entry name" value="Arginosuc_synth_type_1_subfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024074">
        <property type="entry name" value="AS_cat/multimer_dom_body"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00032">
        <property type="entry name" value="argG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001770">
        <property type="entry name" value="PRK00509.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11587">
        <property type="entry name" value="ARGININOSUCCINATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11587:SF2">
        <property type="entry name" value="ARGININOSUCCINATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20979">
        <property type="entry name" value="Arginosuc_syn_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00764">
        <property type="entry name" value="Arginosuc_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69864">
        <property type="entry name" value="Argininosuccinate synthetase, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00565">
        <property type="entry name" value="ARGININOSUCCIN_SYN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4 9" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9 12" id="KW-0436">Ligase</keyword>
    <keyword evidence="7 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Arginosuccinate synthase-like N-terminal" evidence="10">
        <location>
            <begin position="1"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="domain" description="Arginosuccinate synthase C-terminal" evidence="11">
        <location>
            <begin position="160"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="246"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF20979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB40751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="387" mass="43562" checksum="D419A3970843D48B" modified="2008-05-20" version="1">MDTTVAIRWLREKFNAEVYTVTVDVGQEDDFSKIEERAYKAGAVQHFYIDAKRDFADEYIARAVLMNGMYEGVYPLGTALARPLIAAKAIEVARRVGADAVAHGSTSKGNDQVRFDVTVKALAPDLKIIAPARIWGMTRAEEIEYARRHGLPIGEEHKKYSIDDNLWTRSIEGGPLDDPMAEPGEDAFKWTVSPEKAPHEPAYITIGFKDGVPTSINGEKMDMVSLVAALNQIAGSHGVGRIDHVENRLVGFKSREVYEAPAAVVLFHAHRDLEKLVLTPRELRFKHHVLDPQWADLVYQGLWVEPLRTALEKAAEEMERWVTGEVRVKLYKGSVQVVGRDSPYGGYSRELADYSAGWYPSDEEARGFIEMWSLHSLTALRRRRPEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB65</accession>
    <name>B1YB65_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cystathionine gamma-lyase</fullName>
            <ecNumber evidence="4">4.4.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0243</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the trans-sulfuration enzymes family.</text>
    </comment>
    <dbReference type="EC" id="4.4.1.1" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349617.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB65"/>
    <dbReference type="STRING" id="444157.Tneu_0243"/>
    <dbReference type="GeneID" id="6166072"/>
    <dbReference type="KEGG" id="tne:Tneu_0243"/>
    <dbReference type="eggNOG" id="arCOG00060">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018986_2_0_2"/>
    <dbReference type="OrthoDB" id="43458at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004123">
        <property type="term" value="F:cystathionine gamma-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019343">
        <property type="term" value="P:cysteine biosynthetic process via cystathionine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019346">
        <property type="term" value="P:transsulfuration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00614">
        <property type="entry name" value="CGS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.640.10:FF:000046">
        <property type="entry name" value="Cystathionine gamma-lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="entry name" value="Aspartate Aminotransferase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="entry name" value="Type I PLP-dependent aspartate aminotransferase-like (Major domain)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000277">
        <property type="entry name" value="Cys/Met-Metab_PyrdxlP-dep_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006347">
        <property type="entry name" value="PRK08574.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11808:SF15">
        <property type="entry name" value="CYSTATHIONINE GAMMA-LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11808">
        <property type="entry name" value="TRANS-SULFURATION ENZYME FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01053">
        <property type="entry name" value="Cys_Met_Meta_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001434">
        <property type="entry name" value="CGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="PLP-dependent transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="383" mass="41620" checksum="D187B0BA1968FB68" modified="2008-05-20" version="1">MRRGTAAVRGFRLLDPYGSLQPPIYQTALFRMEGEALKSDRGFDLKYSREENPTLRPLEEALATLEDGVDALVFNSGMAALSSVFFSLLNADATVLTTMEAYGTTLRLLSSLGRFGVKLRKTYPSTETYIEGLKSGRPTVAFVETITNPLLHVLDIPEVVKTAKDLGSVVVVDNTFATPVLIQPISHGADVVVHSTSKYIAGHNDVIGGVAVVSSRAMLEELWVWRAMLGGIMQPFEAFLTLRGLKTLFVRFEYQCKSAKAIAEFLAEHSKVAEVIYPGLPTHPDHGVAKKLFGDKFGAVVSFRVKGGRDAVFKFFKSLKLVTPGPSLGGVESIATYPVASAASPIPEEDRKILGITEDLVRLSVGLEDVDDLIEDLDQALNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB66</accession>
    <name>B1YB66_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TrkA-C domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0244</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349618.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB66"/>
    <dbReference type="STRING" id="444157.Tneu_0244"/>
    <dbReference type="GeneID" id="6166014"/>
    <dbReference type="KEGG" id="tne:Tneu_0244"/>
    <dbReference type="eggNOG" id="arCOG01957">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1307885_0_0_2"/>
    <dbReference type="OrthoDB" id="26991at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:monoatomic cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="entry name" value="Regulator of K+ conductance, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003148">
        <property type="entry name" value="RCK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02254">
        <property type="entry name" value="TrkA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="TrkA C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RCK C-terminal" evidence="1">
        <location>
            <begin position="133"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="209" mass="23148" checksum="4624927AE5619F46" modified="2008-05-20" version="1">MVREAVVLDSNDDLGPLLARMLVDNGYVVRVLANQERAKMYEREAVYIHNLVENYERVLRGIDFSRVEVAVFPSPNDMLNLSFAKFARSQGVPIVVIVARGEAVAREAEELGIMAIVSYHCVLSRLTRILNLRFTRILPLKAGVAMLEMLVTSDSPLLGKTIGEVEEETGAKVAIVRGDEYLTSSDVEIQDGDYLIAVGPQADLQQLTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB71</accession>
    <name>B1YB71_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetyl-CoA acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0249</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349623.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB71"/>
    <dbReference type="STRING" id="444157.Tneu_0249"/>
    <dbReference type="GeneID" id="6166180"/>
    <dbReference type="KEGG" id="tne:Tneu_0249"/>
    <dbReference type="eggNOG" id="arCOG01282">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031026_0_0_2"/>
    <dbReference type="OrthoDB" id="25212at2157"/>
    <dbReference type="BRENDA" id="2.3.1.9">
        <property type="organism ID" value="6328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003988">
        <property type="term" value="F:acetyl-CoA C-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.47.10:FF:000010">
        <property type="entry name" value="Acetyl-CoA acetyltransferase (Thiolase)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020615">
        <property type="entry name" value="Thiolase_acyl_enz_int_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18919:SF107">
        <property type="entry name" value="ACETYL-COA ACETYLTRANSFERASE, CYTOSOLIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18919">
        <property type="entry name" value="ACETYL-COA C-ACYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="Thiolase-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00098">
        <property type="entry name" value="THIOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase N-terminal" evidence="5">
        <location>
            <begin position="3"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase C-terminal" evidence="6">
        <location>
            <begin position="270"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="392" mass="42444" checksum="B377E9665DB10CF7" modified="2008-05-20" version="1">MDVVVVGYVRTPIGKFGGAFKDVKPPHLAAFTIKKLLERTGVDGKLVEEVIFGSTLQGGVGQNVARYAALLAGLPVDVSAFTVNRVCSSGMQAIIEAYREIALGDASVVIAGGVESMSTQPICVSHEARWGLRHSIGRRFELTDLMVFDGLTDPATGMLMGEEADMVAKEHKIAREELDKVAYESHMRAWRATENKWFDDMEPVEGEFGGVKLDRDEGIRPDTSLEKLAKLKPAFKPDGLHTAGNSSQLSDGAAALLLMSEEKARELGVKPIARILGYSWHMLEPWRFTEAPVYAIQKLLRKLGVSVDYFDYYEANEAFAVVNVLVNRVLGVPYDRMNVFGGAIALGHPLGASGTRIVTTLISVLRRMGGRRGVAALCHGTGGGTAVALELI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBD5</accession>
    <name>B1YBD5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">4-phosphopantoate--beta-alanine ligase</fullName>
            <ecNumber evidence="5">6.3.2.36</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Phosphopantothenate synthetase</fullName>
            <shortName evidence="5">PPS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0315</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the condensation of (R)-4-phosphopantoate and beta-alanine to 4'-phosphopantothenate in the CoA biosynthesis pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>(R)-4-phosphopantoate + beta-alanine + ATP = (R)-4'-phosphopantothenate + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:27930"/>
            <dbReference type="ChEBI" id="CHEBI:10986"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57966"/>
            <dbReference type="ChEBI" id="CHEBI:61294"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.2.36"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; coenzyme A biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the archaeal phosphopantothenate synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.36" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349687.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBD5"/>
    <dbReference type="STRING" id="444157.Tneu_0315"/>
    <dbReference type="GeneID" id="6166296"/>
    <dbReference type="KEGG" id="tne:Tneu_0315"/>
    <dbReference type="eggNOG" id="arCOG04262">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078701_0_0_2"/>
    <dbReference type="OrthoDB" id="10078at2157"/>
    <dbReference type="UniPathway" id="UPA00241"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016881">
        <property type="term" value="F:acid-amino acid ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12640">
        <property type="entry name" value="Phosphopantoate/pantothenate synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02224">
        <property type="entry name" value="PPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002855">
        <property type="entry name" value="PPS/PS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038138">
        <property type="entry name" value="PPS/PS_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041123">
        <property type="entry name" value="phpantohe_syn_Arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF010324">
        <property type="entry name" value="PRK13761.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40695">
        <property type="entry name" value="4-PHOSPHOPANTOATE--BETA-ALANINE LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40695:SF1">
        <property type="entry name" value="4-PHOSPHOPANTOATE--BETA-ALANINE LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02006">
        <property type="entry name" value="PPS_PS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004853">
        <property type="entry name" value="UCP004853"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 5" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="196"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="180"/>
            <end position="182"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="186"/>
            <end position="187"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="198"/>
            <end position="199"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="252" mass="27781" checksum="1B1323E4F94BF17F" modified="2008-05-20" version="1">MIPPTHPRYRSLLEREKIVEGAREGYVALQGLIAQGRGECFDYLIGEETQPFAQRAIEAAAAALLAARRPVISVNGNVAALAPGDVVRLAKAVPALIEVNLFYRTREREKKIAEILRRHGAEEVLGVGEDAACTIPELFSERRRVSCRGIYTADVVLVPLEDGDRTEALRKMGKTVIAIDLNPLSRTARAASITIVDNVTRALPRLVEAVENLKKDRSQIQDILARYNNSAVLAEALLHIKTRLEKIASEML</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBM3</accession>
    <name>B1YBM3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">phosphoribosylglycinamide formyltransferase 1</fullName>
            <ecNumber evidence="2">2.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">5'-phosphoribosylglycinamide transformylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">GAR transformylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1910</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>N(1)-(5-phospho-beta-D-ribosyl)glycinamide + (6R)-10-formyltetrahydrofolate = N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide + (6S)-5,6,7,8-tetrahydrofolate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15053"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="ChEBI" id="CHEBI:195366"/>
            <dbReference type="EC" id="2.1.2.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Purine metabolism; IMP biosynthesis via de novo pathway; N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide from N(1)-(5-phospho-D-ribosyl)glycinamide (10-formyl THF route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GART family.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.2" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351244.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBM3"/>
    <dbReference type="STRING" id="444157.Tneu_1910"/>
    <dbReference type="GeneID" id="6164916"/>
    <dbReference type="KEGG" id="tne:Tneu_1910"/>
    <dbReference type="eggNOG" id="arCOG02825">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038395_1_3_2"/>
    <dbReference type="OrthoDB" id="27277at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004644">
        <property type="term" value="F:phosphoribosylglycinamide formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.170">
        <property type="entry name" value="Formyl transferase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002376">
        <property type="entry name" value="Formyl_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036477">
        <property type="entry name" value="Formyl_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001555">
        <property type="entry name" value="GART_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43369">
        <property type="entry name" value="PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43369:SF2">
        <property type="entry name" value="PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00551">
        <property type="entry name" value="Formyl_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53328">
        <property type="entry name" value="Formyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00373">
        <property type="entry name" value="GART"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Formyl transferase N-terminal" evidence="9">
        <location>
            <begin position="1"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00038440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00041324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00041682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00047664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="277" mass="31531" checksum="FD7157E867D2655B" modified="2008-05-20" version="1">MKIGILASWRGTNAKAIFDHVKLGVLRGVEPAVLIYSDQEAPVRKIAEAYGVEAVYVQHRGVARSRREQEMAEVLKRYGVDLVVLAGYDYILGVPFIEQFRWRILNIHPSLLPFAGGKGMHGVRVHMEVYKAGVKTSGPTVHLVDESVDGGPIVDQWPVYIGDIYSLDIPYDQKLSILADRVLIYEHRLYSRVLQAVADGLLEVRTERVKAPRVAEEGGRVRYVEEEVEVARAVLKAGEGWMRQWRERQRVYVEHQLREWRESGKPMHLICPHGCLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBR1</accession>
    <name>B1YBR1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Sulfite reductase, dissimilatory-type beta subunit</fullName>
            <ecNumber evidence="9">1.8.99.5</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0345</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.</text>
    </comment>
    <dbReference type="EC" id="1.8.99.5" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349716.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBR1"/>
    <dbReference type="STRING" id="444157.Tneu_0345"/>
    <dbReference type="GeneID" id="6165382"/>
    <dbReference type="KEGG" id="tne:Tneu_0345"/>
    <dbReference type="eggNOG" id="arCOG02059">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044442_0_0_2"/>
    <dbReference type="OrthoDB" id="15347at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018551">
        <property type="term" value="F:dissimilatory sulfite reductase (NADH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006790">
        <property type="term" value="P:sulfur compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="entry name" value="Sulfite Reductase Hemoprotein, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011808">
        <property type="entry name" value="DsrB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005117">
        <property type="entry name" value="NiRdtase/SiRdtase_haem-b_fer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036136">
        <property type="entry name" value="Nit/Sulf_reduc_fer-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006067">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045169">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006066">
        <property type="entry name" value="NO2/SO3_Rdtase_FeS/sirohaem_BS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02066">
        <property type="entry name" value="dsrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11493:SF54">
        <property type="entry name" value="ANAEROBIC SULFITE REDUCTASE SUBUNIT C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11493">
        <property type="entry name" value="SULFITE REDUCTASE [NADPH] SUBUNIT BETA-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01077">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03460">
        <property type="entry name" value="NIR_SIR_ferr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="Nitrite and sulphite reductase 4Fe-4S domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55124">
        <property type="entry name" value="Nitrite/Sulfite reductase N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00365">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0349">Heme</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="8">
        <location>
            <begin position="238"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="378" mass="41296" checksum="6C3468BCA7A12D12" modified="2008-05-20" version="1">MSAIQLNIPNELDRFLPDIVKRNYGKWKERKFHGPGIIEHVSETGERVFTVKAALPPNARVSVDTLEKFADIADKLGVGALRITIAGNVEFITDSLEKALKIREELEKLGFPVGGWGGALWGINTCTAFLTCQIAVIDAPSIGKALGDALKPYFTGEEKLPAKLRVFISGCPSGCAGGTAIDIAIVGMWGAPPKIREEVLPLCMPPPKALAKIPESQVFLVQVCPTGALTLRREGEKIKLVLVGEKCINCGRCKDNCDAFDYDPKDVGAAILIGGKMANTGVGPRLARVLIPWIPANPPRYDEIIAVVKKVVDVWKKHGRPGERLADFVERIGWAKFVELVGAPKMAAQYLWWPDAARTYLTYRARGEVIFKGFRDAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBR5</accession>
    <name>B1YBR5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Peroxiredoxin</fullName>
            <ecNumber evidence="7">1.11.1.24</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Thioredoxin peroxidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Thioredoxin-dependent peroxiredoxin</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_0349</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a hydroperoxide + [thioredoxin]-dithiol = an alcohol + [thioredoxin]-disulfide + H2O</text>
            <dbReference type="Rhea" id="RHEA:62620"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:30879"/>
            <dbReference type="ChEBI" id="CHEBI:35924"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.11.1.24"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodecamer. Pentamer of dimers that assemble into a ring structure.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="7">The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. Although the primary sequence of this enzyme is similar to those of the 1-Cys Prx6 enzymes, its catalytic properties resemble those of the typical 2-Cys Prxs and C(R) is provided by the other dimeric subunit to form an intersubunit disulfide. The disulfide is subsequently reduced by thioredoxin.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the peroxiredoxin family. Prx6 subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.24" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349719.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBR5"/>
    <dbReference type="STRING" id="444157.Tneu_0349"/>
    <dbReference type="GeneID" id="6165445"/>
    <dbReference type="KEGG" id="tne:Tneu_0349"/>
    <dbReference type="eggNOG" id="arCOG00312">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042529_4_4_2"/>
    <dbReference type="OrthoDB" id="6924at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008379">
        <property type="term" value="F:thioredoxin peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033554">
        <property type="term" value="P:cellular response to stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042744">
        <property type="term" value="P:hydrogen peroxide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1020.10">
        <property type="entry name" value="Antioxidant, Horf6, Chain A, domain2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00401">
        <property type="entry name" value="Peroxiredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050217">
        <property type="entry name" value="Peroxiredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024706">
        <property type="entry name" value="Peroxiredoxin_AhpC-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019479">
        <property type="entry name" value="Peroxiredoxin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022915">
        <property type="entry name" value="Peroxiredoxin_TDXH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF009668">
        <property type="entry name" value="PRK13189.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10681">
        <property type="entry name" value="THIOREDOXIN PEROXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10681:SF128">
        <property type="entry name" value="THIOREDOXIN-DEPENDENT PEROXIDE REDUCTASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10417">
        <property type="entry name" value="1-cysPrx_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000239">
        <property type="entry name" value="AHPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0049">Antioxidant</keyword>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3 7" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="6 7" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="9">
        <location>
            <begin position="1"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine sulfenic acid (-SOH) intermediate" evidence="7">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine sulfenic acid (-SOH) intermediate; for peroxidase activity" evidence="8">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Interchain (with Cys-208); in linked form" evidence="7">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Alternate" evidence="7">
        <location>
            <begin position="202"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Interchain (with Cys-49); in linked form" evidence="7">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000239-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="217" mass="24932" checksum="2232A5315B06D2E9" modified="2008-05-20" version="1">MPEVKGPYLGMKIPEDLCFDTDAGRRCFRDYKGRWLLLFSHPGDFRPVCTTEFIAFAKKYDEFKKRGVELLGLSVDTVYSNVEWKRQIKQLWGVEIPFPIISDVPDFQVASLFNAIPPGTTVTVRALALIDPELKLVWFALYPLAVGRGVDEILRVIDAIQFNYKHGYLAPVDWRPGDPVIVPPPQRYEGAEKRLKETGIECKTWWFCTKKYEEVVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBV5</accession>
    <name>B1YBV5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cobalamin (Vitamin B12) biosynthesis CbiM protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0391</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349759.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBV5"/>
    <dbReference type="STRING" id="444157.Tneu_0391"/>
    <dbReference type="GeneID" id="6164910"/>
    <dbReference type="KEGG" id="tne:Tneu_0391"/>
    <dbReference type="eggNOG" id="arCOG02248">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052508_2_1_2"/>
    <dbReference type="OrthoDB" id="30946at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000041">
        <property type="term" value="P:transition metal ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1760.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002751">
        <property type="entry name" value="CbiM/NikMN"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34229">
        <property type="entry name" value="METAL TRANSPORT PROTEIN HI_1621-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34229:SF1">
        <property type="entry name" value="METAL TRANSPORT PROTEIN HI_1621-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01891">
        <property type="entry name" value="CbiM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="39"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="69"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="107"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="132"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="173"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="202" mass="21530" checksum="EF9301A9E3E3F998" modified="2008-05-20" version="1">MHIPDGYLDPISAGVTWAIMLIYGFFAYRKAALGKNLEVVVGLAAAIFIAQMFNWPIPGGTSLHLVGGALAAIMLGPFEAFFVLLLVLLAQTLVFHDGGITTLGANVINMGVVAPLVGWAAWRLLSRYNKPLAAAVAGWASITVAGMAAGFEIGVSPYFPYAWTISVPVMTTWHALLGIVEGVITAAVVEYLLRRAPQYVRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="92" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBW1</accession>
    <name>B1YBW1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Carbamoyltransferase</fullName>
            <ecNumber evidence="8">6.2.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0397</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>C-terminal L-cysteinyl-[HypE protein] + carbamoyl phosphate + ATP + H2O = C-terminal S-carboxamide-L-cysteinyl-[HypE protein] + AMP + phosphate + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:55636"/>
            <dbReference type="Rhea" id="RHEA-COMP:14247"/>
            <dbReference type="Rhea" id="RHEA-COMP:14392"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="ChEBI" id="CHEBI:76913"/>
            <dbReference type="ChEBI" id="CHEBI:139126"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>an acyl phosphate + H2O = a carboxylate + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14965"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29067"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:59918"/>
            <dbReference type="EC" id="3.6.1.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Protein modification; [NiFe] hydrogenase maturation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the carbamoyltransferase HypF family.</text>
    </comment>
    <dbReference type="EC" id="6.2.-.-" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349765.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBW1"/>
    <dbReference type="STRING" id="444157.Tneu_0397"/>
    <dbReference type="GeneID" id="6164715"/>
    <dbReference type="KEGG" id="tne:Tneu_0397"/>
    <dbReference type="eggNOG" id="arCOG01187">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009164_0_0_2"/>
    <dbReference type="OrthoDB" id="371970at2157"/>
    <dbReference type="UniPathway" id="UPA00335"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003998">
        <property type="term" value="F:acylphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016743">
        <property type="term" value="F:carboxyl- or carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003725">
        <property type="term" value="F:double-stranded RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051604">
        <property type="term" value="P:protein maturation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.870.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001792">
        <property type="entry name" value="Acylphosphatase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036046">
        <property type="entry name" value="Acylphosphatase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017968">
        <property type="entry name" value="Acylphosphatase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051060">
        <property type="entry name" value="Carbamoyltrans_HypF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004421">
        <property type="entry name" value="Carbamoyltransferase_HypF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017945">
        <property type="entry name" value="DHBP_synth_RibB-like_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041440">
        <property type="entry name" value="HypF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055128">
        <property type="entry name" value="HypF_C_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006070">
        <property type="entry name" value="Sua5-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011125">
        <property type="entry name" value="Znf_HypF"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00143">
        <property type="entry name" value="hypF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42959">
        <property type="entry name" value="CARBAMOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42959:SF1">
        <property type="entry name" value="CARBAMOYLTRANSFERASE HYPF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00708">
        <property type="entry name" value="Acylphosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17788">
        <property type="entry name" value="HypF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22521">
        <property type="entry name" value="HypF_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01300">
        <property type="entry name" value="Sua5_yciO_yrdC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07503">
        <property type="entry name" value="zf-HYPF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006256">
        <property type="entry name" value="CMPcnvr_hdrg_mat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="Actin-like ATPase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54975">
        <property type="entry name" value="Acylphosphatase/BLUF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55821">
        <property type="entry name" value="YrdC/RibB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00150">
        <property type="entry name" value="ACYLPHOSPHATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00151">
        <property type="entry name" value="ACYLPHOSPHATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51160">
        <property type="entry name" value="ACYLPHOSPHATASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51163">
        <property type="entry name" value="YRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Acylphosphatase-like" evidence="10">
        <location>
            <begin position="4"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="YrdC-like" evidence="11">
        <location>
            <begin position="202"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="19"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00048220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR006256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="748" mass="81186" checksum="7EB135EFD31C777F" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBY1</accession>
    <name>B1YBY1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Signal transduction protein with CBS domains</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0417</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349785.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBY1"/>
    <dbReference type="STRING" id="444157.Tneu_0417"/>
    <dbReference type="GeneID" id="6166121"/>
    <dbReference type="KEGG" id="tne:Tneu_0417"/>
    <dbReference type="eggNOG" id="arCOG00631">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040681_12_1_2"/>
    <dbReference type="OrthoDB" id="43333at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd09836">
        <property type="entry name" value="CBS_pair_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="entry name" value="CBS-domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051257">
        <property type="entry name" value="Diverse_CBS-Domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080:SF2">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43080">
        <property type="entry name" value="CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="CBS-domain pair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="8"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="71"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="139" mass="15254" checksum="2A1D35DEFAD053F5" modified="2008-05-20" version="1">MDKVGNYIRREPITVPPGATLREAVKIMAQYNVGLVVIADQARRPVGVLSERDIIRAVAAGRTLDAKVEEVGTVGNILTVKKDEDIYTAIKAMRSRGVRHVVVVNEDGTVAGVLSIRDLVEDRALKTLGDRAWWPPPEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBZ7</accession>
    <name>B1YBZ7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0433</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349801.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBZ7"/>
    <dbReference type="STRING" id="444157.Tneu_0433"/>
    <dbReference type="GeneID" id="6166138"/>
    <dbReference type="KEGG" id="tne:Tneu_0433"/>
    <dbReference type="eggNOG" id="arCOG03169">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061108_0_0_2"/>
    <dbReference type="OrthoDB" id="132045at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011579">
        <property type="entry name" value="ATPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048907">
        <property type="entry name" value="WHD_MCM_arc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34301:SF8">
        <property type="entry name" value="ATPASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34301">
        <property type="entry name" value="DNA-BINDING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01637">
        <property type="entry name" value="ATPase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21100">
        <property type="entry name" value="WHD_MCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase" evidence="1">
        <location>
            <begin position="14"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="MCM C-terminal" evidence="2">
        <location>
            <begin position="287"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF21100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="359" mass="40550" checksum="55977B813BC04BBA" modified="2008-05-20" version="1">MLFREGPVERPDELFDREAELEELRRALGERRVVALLGVRRVGKTSLARAATWDLPRVYVDVREFEWRTYVTWDDFYGVLRSALPRSRRLLEALSKISGVSVAGLEISFAVGRGRPPPAELLKALDRWAESEGARIVFVIDEAQELHKLKGGSFAPLLAWAYDNLSNVVFLLTGSKVGLIHRLLRPEDPQSPMYGRYIYTIHVGPLPRDRAREFLARGLEEAGVRYAEEALEVAVDKLGGVIGWLAYLGLEAVKAGGLTETLVAEALEKAARLAWGEFCRFVQLRQSRRYIYIMQAAAEGAAWSEIKRYLEIREGPLYDAELSRLLKTLVEEGWLEKNDVYRPADPLLRHAAKTAASCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC17</accession>
    <name>B1YC17_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1956</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351290.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC17"/>
    <dbReference type="STRING" id="444157.Tneu_1956"/>
    <dbReference type="GeneID" id="6164601"/>
    <dbReference type="KEGG" id="tne:Tneu_1956"/>
    <dbReference type="eggNOG" id="arCOG05443">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1745618_0_0_2"/>
    <dbReference type="OrthoDB" id="27359at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="144" mass="15989" checksum="F470F856FDFBF8A8" modified="2008-05-20" version="1">MRRGAALVDWRRGLLAYVEADEETLKKFREIMALCGGNVEPRTLPCLSSLASRLSARSVLYITDLYGIANSLAFERKTPRGPLLEKAWAYLSELICRDGEVECGEEVALACCRPCGDACRLAEILGAAKVGVEVDLREELRRRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC19</accession>
    <name>B1YC19_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">CDP-archaeol synthase</fullName>
            <ecNumber evidence="11">2.7.7.67</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">carS</name>
        <name evidence="12" type="ordered locus">Tneu_1958</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1-phosphate (DGGGP) and CTP. This reaction is the third ether-bond-formation step in the biosynthesis of archaeal membrane lipids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate + CTP + H(+) = CDP-2,3-bis-O-(geranylgeranyl)-sn-glycerol + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:25690"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:58837"/>
            <dbReference type="ChEBI" id="CHEBI:58838"/>
            <dbReference type="EC" id="2.7.7.67"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="11">Membrane lipid metabolism; glycerophospholipid metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell membrane</location>
            <topology evidence="11">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the CDP-archaeol synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.67" evidence="11"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351292.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC19"/>
    <dbReference type="STRING" id="444157.Tneu_1958"/>
    <dbReference type="GeneID" id="6164481"/>
    <dbReference type="KEGG" id="tne:Tneu_1958"/>
    <dbReference type="eggNOG" id="arCOG04106">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105710_0_0_2"/>
    <dbReference type="OrthoDB" id="45383at2157"/>
    <dbReference type="UniPathway" id="UPA00940"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043338">
        <property type="term" value="F:CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046474">
        <property type="term" value="P:glycerophospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01117">
        <property type="entry name" value="CDP_archaeol_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032690">
        <property type="entry name" value="CarS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002726">
        <property type="entry name" value="CarS_archaea"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003114">
        <property type="entry name" value="PRK04032.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39650">
        <property type="entry name" value="CDP-ARCHAEOL SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39650:SF1">
        <property type="entry name" value="CDP-ARCHAEOL SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01864">
        <property type="entry name" value="CarS-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2 11" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="7 11" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="9 11" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="10 11" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 11" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="74"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB40873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="164" mass="18099" checksum="007472492F25FBF2" modified="2008-05-20" version="1">MDIAQFFLLIWPPYVANGAAVFAGRLRWRHPIDFGRSFVDGRRIFGDGKTFEGFLIGVAAGTLLGYAPNLAYRYLSPIDALVLSAAALLGDLVGAFVKRRLCMPRGHPAFPLDQLDFILTAIAVYSLYRDVPLAYIAAAAVVTPLIHRATNYVAYLLGLKREPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC51</accession>
    <name>B1YC51_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1990</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351324.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC51"/>
    <dbReference type="STRING" id="444157.Tneu_1990"/>
    <dbReference type="GeneID" id="6165673"/>
    <dbReference type="KEGG" id="tne:Tneu_1990"/>
    <dbReference type="eggNOG" id="arCOG05446">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2857241_0_0_2"/>
    <dbReference type="OrthoDB" id="26354at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="5"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="64" mass="7263" checksum="759074D4576A7410" modified="2008-05-20" version="1">MRLVYAYAGFSLGIAVYLLYLAASGLRTPEIPIGAVYINLFDMVTVAFIVFTFYVIYKLTERRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC58</accession>
    <name>B1YC58_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Electron transfer flavoprotein alpha/beta-subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1998</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351331.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC58"/>
    <dbReference type="STRING" id="444157.Tneu_1998"/>
    <dbReference type="GeneID" id="6165833"/>
    <dbReference type="KEGG" id="tne:Tneu_1998"/>
    <dbReference type="eggNOG" id="arCOG00446">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060196_2_1_2"/>
    <dbReference type="OrthoDB" id="6635at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01714">
        <property type="entry name" value="ETF_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014730">
        <property type="entry name" value="ETF_a/b_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012255">
        <property type="entry name" value="ETF_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033948">
        <property type="entry name" value="ETF_beta_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21294">
        <property type="entry name" value="ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21294:SF17">
        <property type="entry name" value="PROTEIN FIXA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01012">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000090">
        <property type="entry name" value="Beta-ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00893">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Electron transfer flavoprotein alpha/beta-subunit N-terminal" evidence="1">
        <location>
            <begin position="23"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="266" mass="28999" checksum="595928D61E1B134C" modified="2008-05-20" version="1">MKIVVLVKSAVPLTSAVKVDPKTGSLIREGVPLSVNMWDRDAVELALKLKDKYGGEVVAVSMAPPTGISGLKSLIGMGVDSALLVTDRAYARADTWATSYVLAKAVEKYVPDFDLVVAGEESTDGATGHVGAQVAYWLKLPYVYYVYDVEVKGRAAVVKRFLEDEGVEEVYELDLPAAISVLKRSQVPREVRLSYKLDAESRIKVVTNKELGLETECVGLQGSPTIIARVAESLYPPRRKALLQGQPRDVAKKLVEVLREIGVLEL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-07-22" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC67</accession>
    <name>RS7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein uS7</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">30S ribosomal protein S7</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps7</name>
        <name type="ordered locus">Tneu_2007</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS7 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351340.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC67"/>
    <dbReference type="SMR" id="B1YC67"/>
    <dbReference type="STRING" id="444157.Tneu_2007"/>
    <dbReference type="GeneID" id="6165553"/>
    <dbReference type="KEGG" id="tne:Tneu_2007"/>
    <dbReference type="eggNOG" id="arCOG04254">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063975_0_0_2"/>
    <dbReference type="OrthoDB" id="45346at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd14867">
        <property type="entry name" value="uS7_Eukaryote"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.455.10:FF:000011">
        <property type="entry name" value="30S ribosomal protein S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.455.10">
        <property type="entry name" value="Ribosomal protein S7 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00480_A">
        <property type="entry name" value="Ribosomal_uS7_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000235">
        <property type="entry name" value="Ribosomal_uS7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026018">
        <property type="entry name" value="Ribosomal_uS7_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020606">
        <property type="entry name" value="Ribosomal_uS7_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023798">
        <property type="entry name" value="Ribosomal_uS7_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036823">
        <property type="entry name" value="Ribosomal_uS7_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005716">
        <property type="entry name" value="Ribosomal_uS7_euk/arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003106">
        <property type="entry name" value="PRK04027.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01028">
        <property type="entry name" value="uS7_euk_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11205">
        <property type="entry name" value="RIBOSOMAL PROTEIN S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00177">
        <property type="entry name" value="Ribosomal_S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002122">
        <property type="entry name" value="RPS7p_RPS7a_RPS5e_RPS7o"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47973">
        <property type="entry name" value="Ribosomal protein S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00052">
        <property type="entry name" value="RIBOSOMAL_S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_0000344319" description="Small ribosomal subunit protein uS7">
        <location>
            <begin position="1"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="224" mass="25434" checksum="9B57B3C3A24450C6" modified="2008-05-20" version="1">MSSTIFGEQLPKYSRVEYVGDVPIVEECPRDVKTINGEPPLLFGKWSFENVVVRDPGLRRYICLKPVVLPHTEGRYQNYRFGKARIPIVERLINLMMRPGRNAGKKHKAYNIVKRAFDIVYYKTGQNPIQVFIDAIVNTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFNNPKPIEECLADELVAAAANDPKSYAVRKREELERIAAASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="38" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCA9</accession>
    <name>B1YCA9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Apea-like HEPN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0475</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCA9"/>
    <dbReference type="STRING" id="444157.Tneu_0475"/>
    <dbReference type="KEGG" id="tne:Tneu_0475"/>
    <dbReference type="HOGENOM" id="CLU_854233_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="325" mass="38271" checksum="9DD850AB6F1A0414" modified="2008-05-20" version="1">MGSLNDDFGLEVVIRSVCNEYVEKWKTEGKRYINVSSFEQMYAEDNVTPIEHEFTLRARLPVLNRENPAIPPAIPLLPLRILRRLAIYLTKTLEIQINWDHYEYWAWSAEVFRFFENSSPLLKALRERESIELLYLLFHLCLSRLGYTPQTREGVILNRVVDSVVNRHVKQIISNKFVIGIPIAAATFETVVKLLIELYGDDETKREIGGKKTLGRILSIFEEKVVPRLPQTLREDIQEMNKVIEGIWDIYGSNWRAILRNWRNEFMHGAKTWAPRAFAVYTNYISLLLWHSIPSGEYERMREKIIELRFYADIENYWGFYPPPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCB6</accession>
    <name>B1YCB6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0482</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCB6"/>
    <dbReference type="STRING" id="444157.Tneu_0482"/>
    <dbReference type="KEGG" id="tne:Tneu_0482"/>
    <dbReference type="HOGENOM" id="CLU_348733_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="142"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="206"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="278"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="300"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="323"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="347"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="384"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="410"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="439"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="482"/>
            <end position="500"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="507"/>
            <end position="528"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="808" mass="93981" checksum="0B9E3C77A9D43BF6" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="40" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCC8</accession>
    <name>B1YCC8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0496</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCC8"/>
    <dbReference type="KEGG" id="tne:Tneu_0496"/>
    <dbReference type="HOGENOM" id="CLU_1656945_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="159" mass="17879" checksum="2A930595F32FE275" modified="2008-05-20" version="1">MGGFGFRFKNDCVVSVVALIVESPVRRGYVMRGGLSQMFLEVDSKYLSEQYSIGLFVEAWAEGEVLGVRRVGGVLSAEEEGAFREHVVGRRVRLYVIPGVFSGVDQLYFDESSWSIFRDAGVFPDEYQVVVRLEKVVVKPDGAVRELALYPYRDVVAKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCE7</accession>
    <name>B1YCE7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Polysaccharide biosynthesis protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0517</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349880.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCE7"/>
    <dbReference type="STRING" id="444157.Tneu_0517"/>
    <dbReference type="GeneID" id="6165885"/>
    <dbReference type="KEGG" id="tne:Tneu_0517"/>
    <dbReference type="eggNOG" id="arCOG02215">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_595316_0_0_2"/>
    <dbReference type="OrthoDB" id="28661at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="155"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="192"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="231"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="262"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="302"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="333"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="360"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="393"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="425"/>
            <end position="447"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="459" mass="48161" checksum="09E2BA9B5C359855" modified="2008-05-20" version="1">MSSRLLAVGSGVFSLVASLVFMVAVTRRLPEGELAQLARFNAAFAIASAALGYITTWYPRILARDRGALPDLLGLGLIFSAAAASAAALYLALSGVWDPALYLFLFVLTALAGLPTGAYLSVYRQTLLASLSYLSQAAKVVGAFVVRLFPTADTALAVNVFMSLPTAAASLRRPRLRRAAELLREAARGASYQTLALAAAYAGGLYVYVYGAVGGDRLLSYSYVLFQASKAVYPALAIVPLMYGSLLRAGDKARRALLDGAAVLYLYLAVAAVMASAPDWLVAFLRPGELSGELVEAMRANAVALLLSGFHLHLSNFLLGVEEKAVFTARDKPGLALLGDLALTPVGLALAYYAASAFGAVGMVAASAATTAAAVAVRALLLGAAARPLVARLYLPALGTLALFYLLPMPRWYKFGDAATTLLSFIPNGLLIAALALAVFAALSPATREALVLLYRRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCF5</accession>
    <name>B1YCF5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Nitrogen regulatory protein P-II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0525</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Could be involved in the regulation of nitrogen fixation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the P(II) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349888.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCF5"/>
    <dbReference type="STRING" id="444157.Tneu_0525"/>
    <dbReference type="GeneID" id="6165813"/>
    <dbReference type="KEGG" id="tne:Tneu_0525"/>
    <dbReference type="eggNOG" id="arCOG02305">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082268_0_0_2"/>
    <dbReference type="OrthoDB" id="10960at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030234">
        <property type="term" value="F:enzyme regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006808">
        <property type="term" value="P:regulation of nitrogen utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002187">
        <property type="entry name" value="N-reg_PII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017918">
        <property type="entry name" value="N-reg_PII_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30115">
        <property type="entry name" value="NITROGEN REGULATORY PROTEIN P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30115:SF13">
        <property type="entry name" value="PII-LIKE PROTEIN GLNBI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00543">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00340">
        <property type="entry name" value="PIIGLNB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00938">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="GlnB-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00638">
        <property type="entry name" value="PII_GLNB_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51343">
        <property type="entry name" value="PII_GLNB_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0535">Nitrogen fixation</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="modified residue" description="O-UMP-tyrosine" evidence="5">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR602187-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="108" mass="11579" checksum="E0B4DA9A6221B3E5" modified="2008-05-20" version="1">MKLVRAVIREDKLVDVLDALVRAGYTGATVFRDVGGMGGESGVVKIRGRTYEALLPRAVVEVAVEDGEVEKVVKTIMEAARTGHVGDGRIFVLGVEGAWRIRSGEKLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCH9</accession>
    <name>B1YCH9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0549</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349912.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCH9"/>
    <dbReference type="STRING" id="444157.Tneu_0549"/>
    <dbReference type="GeneID" id="6165335"/>
    <dbReference type="KEGG" id="tne:Tneu_0549"/>
    <dbReference type="eggNOG" id="arCOG01020">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_4_1_2"/>
    <dbReference type="OrthoDB" id="162762at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd06338">
        <property type="entry name" value="PBP1_ABC_ligand_binding-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051010">
        <property type="entry name" value="BCAA_transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30483:SF37">
        <property type="entry name" value="ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30483">
        <property type="entry name" value="LEUCINE-SPECIFIC-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="Periplasmic binding protein-like I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Leucine-binding protein" evidence="2">
        <location>
            <begin position="55"/>
            <end position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="453" mass="48641" checksum="486577DB4F9CE60D" modified="2008-05-20" version="1">MASKTALAVVGLVAAALLVGIALFAPKSPPPAVAPPQYTSTTTAPQTTAAACPDEITIGTAMPLSGRYAAEGQYSLWGALAVVNWVNDRGGVDCGGKKVKVRLVYRDSESKLELAQSITESLVTQDKVNFLLSPYGSDLALGVSSIAEKYGVLMAVVGASSDRIFQQGFKYVVGVAAPASQYMVPVLDMVVKRDPTAKRVAILYRDSEFNRQVAEGAKAYAEKLGLQVVLYEAYPASPKDLTPQILKVKQAAPDVIIVASHFADGQLVVRQLAEQKVDAKLIALSVAPLVPDFYKALGTKAECVVGPSHWEPGVTYSPQLAKQRGEDWFGPTKEEFITYFKKVAKEMGGREVEPGYHAAWAAEGVLAILYGVQKAASADSDKVLNALRGSRFMTFFGEFKLDPATNLNVAHTMVVVQWQGGQRLVVWPADVAEGKLVYPSLTWDQKAAGQLCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCI6</accession>
    <name>B1YCI6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0557</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349919.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCI6"/>
    <dbReference type="STRING" id="444157.Tneu_0557"/>
    <dbReference type="GeneID" id="6165700"/>
    <dbReference type="KEGG" id="tne:Tneu_0557"/>
    <dbReference type="eggNOG" id="arCOG02217">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_175270_0_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="54" mass="6341" checksum="724D3DFBA9D82F57" modified="2008-05-20" version="1">MNWGEELRKFVEEKIRELEAEENMGKVVEELESLDVEVPAGFSQTSIKEDRDRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCL0</accession>
    <name>B1YCL0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphohistidine phosphatase, SixA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0582</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349943.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCL0"/>
    <dbReference type="GeneID" id="6165666"/>
    <dbReference type="KEGG" id="tne:Tneu_0582"/>
    <dbReference type="eggNOG" id="arCOG01992">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084603_3_1_2"/>
    <dbReference type="OrthoDB" id="304253at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0101006">
        <property type="term" value="F:protein histidine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051021">
        <property type="entry name" value="Mito_Ser/Thr_phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004449">
        <property type="entry name" value="SixA"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00249">
        <property type="entry name" value="sixA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20935">
        <property type="entry name" value="PHOSPHOGLYCERATE MUTASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20935:SF0">
        <property type="entry name" value="SERINE_THREONINE-PROTEIN PHOSPHATASE PGAM5, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="Phosphoglycerate mutase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="146" mass="15801" checksum="AD9704B5A53B5C6E" modified="2008-05-20" version="1">MPLLCLVQHGKAYPESVDPERSLTPEGADETRRVAAALAKAGVKIAAIYHSGKKRAKQTAEIFAEALKPARLEEAQGLNPNDDPAPWAQRINAIAEDAMIVGHLPHLARLAASLLGADVVEFRHSAALCLAGPPWRIRWYLTPELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCQ6</accession>
    <name>B1YCQ6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCQ6"/>
    <dbReference type="STRING" id="444157.Tneu_0630"/>
    <dbReference type="KEGG" id="tne:Tneu_0630"/>
    <dbReference type="eggNOG" id="arCOG07058">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1631708_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="168" mass="18639" checksum="8D3D1F560CEEC6D1" modified="2008-05-20" version="1">MWKDVRRLVVYSREWRDERTLKLYRALTVLLQRQRALILEEIARLSPARALVFTYPCGWHGDVLFIAPYVVAVGPFENTAVVDGVAALPDRVALVMLEGGWTAEDVFKEFGPFDVGIACSGAPLLGARRYVHKMVIARVEGPLGELIDSIFQPADAEADVVIKVGDSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCR0</accession>
    <name>B1YCR0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome c biogenesis protein transmembrane region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0634</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349993.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCR0"/>
    <dbReference type="STRING" id="444157.Tneu_0634"/>
    <dbReference type="GeneID" id="6165425"/>
    <dbReference type="KEGG" id="tne:Tneu_0634"/>
    <dbReference type="eggNOG" id="arCOG02405">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_732847_0_0_2"/>
    <dbReference type="OrthoDB" id="115386at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051790">
        <property type="entry name" value="Cytochrome_c-biogenesis_DsbD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31272:SF9">
        <property type="entry name" value="BLL1027 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31272">
        <property type="entry name" value="CYTOCHROME C-TYPE BIOGENESIS PROTEIN HI_1454-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="217"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="246"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="297"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="332"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="377"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="408" mass="42508" checksum="1F275D02FF9F1FFE" modified="2008-05-20" version="1">MRALTALLIASALVLALQIGQLQFIDVNSAQDLANALGEGPVLIFIHQPDCPGCIYMKTQVFPNGQVAAALKGVRLISIDLSKYLLRSLDVVADGQVYIYYERSLSVQRASGPQRIPVVGTPTLVMGYVKDGKLHVTFVMIGAADVPTFLEFVKMAYGAAQKTPQQAPQQAPQPTPNVAVQLAASFAAGAASVFSPCVLPVLTIAATTYLARRSLPLVLAGMAASFAALATAVTALASWVGQAVNTALYLVGGAVLIAMGLVLVVERLNRSFVLWASRFQTSAYKASKRAVGRAGDVLLGASLGAVWTPCIAPFFGAVVVANFVASALSGNYIALFVSTLAYAAGLAVVIHLLVGALKRGAGRASRSMKWAAWGRRLEYAVGIASIALGALLIGEAAGLGTFSALFKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCR2</accession>
    <name>B1YCR2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0636</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349995.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCR2"/>
    <dbReference type="STRING" id="444157.Tneu_0636"/>
    <dbReference type="GeneID" id="6165406"/>
    <dbReference type="KEGG" id="tne:Tneu_0636"/>
    <dbReference type="eggNOG" id="arCOG07031">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1243065_0_0_2"/>
    <dbReference type="OrthoDB" id="211843at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="222" mass="24978" checksum="873520E2A593C338" modified="2008-05-20" version="1">MQTAVRAKLLQYPPPPVLTPQLITTVSLISTRLYGLFDLGVFLARLVEAGVQKFGDRLDPCWLYVVLPNGYKHFAYFSNDVPEASTYATLYPDPYLGALFIAGSGRRAAFRPLGNDYLDGLFETLAQSEGWNIHVSNYVEYESHQNKHVVDKECIVERLKSVLPREATYEKDALLSVLVPTMPQAFLTDPQLMKLISLGLMEYRETTIVPTQLLVSLLGMLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCU1</accession>
    <name>B1YCU1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0665</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350024.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCU1"/>
    <dbReference type="STRING" id="444157.Tneu_0665"/>
    <dbReference type="GeneID" id="6165158"/>
    <dbReference type="KEGG" id="tne:Tneu_0665"/>
    <dbReference type="eggNOG" id="arCOG07694">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1232807_0_0_2"/>
    <dbReference type="OrthoDB" id="28334at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="230" mass="26122" checksum="1C5E37C0954E4C71" modified="2008-05-20" version="1">MELLLAELKTKIEYQIAWLLYTIGVRSHKRLPALKELYAKAMAAKWCSKKDRKFCEAAFMRLYSYDIAKYLRQGEAAFILSLALYDVERGDHRLTTVVNYVERGVMPTEIAVFTNKIDIDSLVPTLAGIIKALGETSPELLASTWHIMATRTRLLPPLEKVLDNAVILGVLAEMEKKGYVMRDGNRYVLTEEGKLVARDVELPQDVARLKQLKYVTPAFFAILNTPVENL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD04</accession>
    <name>B1YD04_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UspA domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0728</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350087.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD04"/>
    <dbReference type="STRING" id="444157.Tneu_0728"/>
    <dbReference type="GeneID" id="6165520"/>
    <dbReference type="KEGG" id="tne:Tneu_0728"/>
    <dbReference type="eggNOG" id="arCOG02053">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049301_16_5_2"/>
    <dbReference type="OrthoDB" id="14880at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00293">
        <property type="entry name" value="USP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UspA" evidence="1">
        <location>
            <begin position="13"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="139" mass="15529" checksum="63CF61BC2EE00017" modified="2008-05-20" version="1">MVDEPSYELAYRFRRILVPVSPMNPSRLKEILSVAADFGERYGAEIVYVYVAAGDADVEQLKRSIEEHMARKGVRYSFKVRKLGEGETVASEIVKELSENSYDMVILHSRGYYGSSALLYNSTSIAVALAANTSVLILR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="37" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD05</accession>
    <name>B1YD05_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0729</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350088.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD05"/>
    <dbReference type="STRING" id="444157.Tneu_0729"/>
    <dbReference type="GeneID" id="6165483"/>
    <dbReference type="KEGG" id="tne:Tneu_0729"/>
    <dbReference type="HOGENOM" id="CLU_1821092_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="141" mass="15607" checksum="6356BE8CB18BCE4A" modified="2008-05-20" version="1">MKWVTHYVWAALPLISVYRCSYLLLIAAYAIAATKLTDVLAHGRKPVKAWRGGPWAVAKTVPYRTRWHDPWAVATHSLTAASVAWIAGLPWALWAALGALGGLTHVFLDRLTPGKRAISWVYNAPALVLGLLMAYYLCLPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD16</accession>
    <name>B1YD16_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 13">CRISPR-associated exonuclease Cas4</fullName>
            <ecNumber evidence="3 13">3.1.12.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Tneu_0740</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="15" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="13">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="13">Mg(2+) or Mn(2+) required for ssDNA cleavage activity.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>iron-sulfur cluster</name>
            <dbReference type="ChEBI" id="CHEBI:30408"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the CRISPR-associated exonuclease Cas4 family.</text>
    </comment>
    <dbReference type="EC" id="3.1.12.1" evidence="3 13"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350099.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD16"/>
    <dbReference type="STRING" id="444157.Tneu_0740"/>
    <dbReference type="GeneID" id="6165163"/>
    <dbReference type="KEGG" id="tne:Tneu_0740"/>
    <dbReference type="eggNOG" id="arCOG00790">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1507438_0_0_2"/>
    <dbReference type="OrthoDB" id="24369at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051827">
        <property type="entry name" value="Cas4_exonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013343">
        <property type="entry name" value="CRISPR-assoc_prot_Cas4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022765">
        <property type="entry name" value="Dna2/Cas4_DUF83"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00372">
        <property type="entry name" value="cas4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36531">
        <property type="entry name" value="CRISPR-ASSOCIATED EXONUCLEASE CAS4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36531:SF2">
        <property type="entry name" value="CRISPR-ASSOCIATED EXONUCLEASE CAS4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01930">
        <property type="entry name" value="Cas_Cas4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 13" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="8 13" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="7 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9 13" id="KW-0408">Iron</keyword>
    <keyword evidence="10 13" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="12 13" id="KW-0464">Manganese</keyword>
    <keyword evidence="6 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 13" id="KW-0540">Nuclease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF83" evidence="14">
        <location>
            <begin position="58"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU365022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF01930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ACB39679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="217" mass="25051" checksum="D86F491221574628" modified="2008-05-20" version="1">MELLLPRPICSLVNCDDLENSIDADSALEEMKKEQEVFRLLPDVYAYRYDFRRISPSVINDFEYCPRLLWVQYKLGLKLFTKSSAISLVRGRLLHERYERAVSAFDNVITEYKVEVGDLVGVIDVVIRKGGRSIPVEVKTGLASKEAHRKQLQIYIYLLNAGYGYLVYRNKVERVERDDRAVELLMEIKKVLSSDRPPAARCGRCPFEVICRNVATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD26</accession>
    <name>B1YD26_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Haloacid dehalogenase domain protein hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0750</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350109.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD26"/>
    <dbReference type="STRING" id="444157.Tneu_0750"/>
    <dbReference type="GeneID" id="6165207"/>
    <dbReference type="KEGG" id="tne:Tneu_0750"/>
    <dbReference type="eggNOG" id="arCOG02291">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093397_0_0_2"/>
    <dbReference type="OrthoDB" id="26932at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.520">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="entry name" value="HAD superfamily/HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051400">
        <property type="entry name" value="HAD-like_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46470:SF4">
        <property type="entry name" value="5-AMINO-6-(5-PHOSPHO-D-RIBITYLAMINO)URACIL PHOSPHATASE YIGB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46470">
        <property type="entry name" value="N-ACYLNEURAMINATE-9-PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00702">
        <property type="entry name" value="Hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01129">
        <property type="entry name" value="C1.5:_HAD__Beta-PGM__Phosphata"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00003">
        <property type="entry name" value="Haloacid_Dehalogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="HAD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="233" mass="26657" checksum="CCED0742C3459A15" modified="2008-05-20" version="1">MATVLIDLDGTLIPLNAWRPVFAELCEEIAREAGVRPEDVWRRARQRNLEQMRALDWRAFDWQRIFTEVARELGLSRAPDVGEALQRHLHAFTLNEGAAEALARLREMGHRVEIATNGHAVYQLPVIRRLGLDRLVDGVRTSDMYQCPKTCPQYFENADAIVGDNPIFDVYFPRRFGLITVFYGEWERSSAVHGQRMAIDLTETVPHAVVKALREVPDAVERLLPRRSTARSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD34</accession>
    <name>B1YD34_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0758</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350117.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD34"/>
    <dbReference type="GeneID" id="6164609"/>
    <dbReference type="KEGG" id="tne:Tneu_0758"/>
    <dbReference type="eggNOG" id="arCOG03750">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_187360_0_0_2"/>
    <dbReference type="OrthoDB" id="27188at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="73" mass="8416" checksum="0A6C7847E3B3E9E3" modified="2008-05-20" version="1">MYRVLANKREGRILVTGKEKDLELLAEGWDLLLESLDWEEAFEYALEIAGDDVVEWYYDEAVKKKHLAGLVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD96</accession>
    <name>B1YD96_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0821</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350179.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD96"/>
    <dbReference type="STRING" id="444157.Tneu_0821"/>
    <dbReference type="GeneID" id="6164280"/>
    <dbReference type="KEGG" id="tne:Tneu_0821"/>
    <dbReference type="eggNOG" id="arCOG05551">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1118248_0_0_2"/>
    <dbReference type="OrthoDB" id="26272at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.150">
        <property type="entry name" value="Divalent-metal-dependent TIM barrel enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="Xylose isomerase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="250" mass="28257" checksum="4972CD9905D7A59D" modified="2008-05-20" version="1">MRFQVYLKRRGKWRSYLNAVERVGAPYVLEVGHLDTSRSPLAAALELEEAAPEALVLPWIGVAELEWYILLADALGVRRLVLPPPPTLQEIEAYYRAAVEYGIEVNWIYGVPPMARIKDVEAVARALRPTAARIVYDPVKARGTKEIYTTVVALSGYIREIYLSNRRGERGPRLPPFDPIGRINYVELLQALQLIQWEGRATIRQSPQFVNELELQLRLGSEVLETAKNAGVSKKVQRRISAVIDELVSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="99" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDC8</accession>
    <name>B1YDC8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 15">Indolepyruvate oxidoreductase subunit IorA</fullName>
            <shortName evidence="15">IOR</shortName>
            <ecNumber evidence="15">1.2.7.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12 15">Indolepyruvate ferredoxin oxidoreductase subunit alpha</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ordered locus">Tneu_0854</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="18" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 15">Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="14">
            <text>a 2-oxocarboxylate + 2 oxidized [2Fe-2S]-[ferredoxin] + CoA = an acyl-CoA + 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:42316"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="1.2.7.11"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13 15">
            <text>indole-3-pyruvate + 2 oxidized [2Fe-2S]-[ferredoxin] + CoA = (indol-3-yl)acetyl-CoA + 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12645"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:17640"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57271"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="EC" id="1.2.7.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15 16">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="15 16">Binds 2 [4Fe-4S] clusters. In this family the first cluster has a non-standard and varying [4Fe-4S] binding motif CX(2)CX(2)CX(4-5)CP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heterodimer composed of an alpha and a beta subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 15">Heterodimer of the IorA and IorB subunits.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.8" evidence="15"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350211.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDC8"/>
    <dbReference type="STRING" id="444157.Tneu_0854"/>
    <dbReference type="GeneID" id="6165765"/>
    <dbReference type="KEGG" id="tne:Tneu_0854"/>
    <dbReference type="eggNOG" id="arCOG01609">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017727_0_0_2"/>
    <dbReference type="OrthoDB" id="19071at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018491">
        <property type="term" value="F:2-oxobutyrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043805">
        <property type="term" value="F:indolepyruvate ferredoxin oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02008">
        <property type="entry name" value="TPP_IOR_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.970:FF:000039">
        <property type="entry name" value="Indolepyruvate oxidoreductase subunit IorA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.970">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045025">
        <property type="entry name" value="HACL1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017721">
        <property type="entry name" value="IorA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme_TPP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43710">
        <property type="entry name" value="2-HYDROXYACYL-COA LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43710:SF7">
        <property type="entry name" value="INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01855">
        <property type="entry name" value="POR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006439">
        <property type="entry name" value="Indolepyruvate_ferr_oxidored"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="TK C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 15 16" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="8 15" id="KW-0249">Electron transport</keyword>
    <keyword evidence="10 15 16" id="KW-0408">Iron</keyword>
    <keyword evidence="11 15 16" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7 15 16" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 15" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 15" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="17">
        <location>
            <begin position="522"/>
            <end position="551"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="17">
        <location>
            <begin position="552"/>
            <end position="581"/>
        </location>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="531"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="534"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="537"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="543"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="561"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="564"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="567"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="571"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00017710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00030514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00048332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00048893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRNR" id="PIRNR006439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR006439-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="ACB39791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="590" mass="63493" checksum="F80FD5926E40CA8D" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDD3</accession>
    <name>B1YDD3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Small ribosomal subunit protein uS15</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rps15</name>
        <name evidence="8" type="ordered locus">Tneu_0859</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="4">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the universal ribosomal protein uS15 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350216.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDD3"/>
    <dbReference type="STRING" id="444157.Tneu_0859"/>
    <dbReference type="GeneID" id="6164564"/>
    <dbReference type="KEGG" id="tne:Tneu_0859"/>
    <dbReference type="eggNOG" id="arCOG04185">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090139_2_0_2"/>
    <dbReference type="OrthoDB" id="6533at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022627">
        <property type="term" value="C:cytosolic small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070181">
        <property type="term" value="F:small ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00353">
        <property type="entry name" value="Ribosomal_S15p_S13e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.10:FF:000003">
        <property type="entry name" value="40S ribosomal protein S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.860.130:FF:000001">
        <property type="entry name" value="40S ribosomal protein S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.860.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.10">
        <property type="entry name" value="S15/NS1, RNA-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01343_A">
        <property type="entry name" value="Ribosomal_uS15_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000589">
        <property type="entry name" value="Ribosomal_uS15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023029">
        <property type="entry name" value="Ribosomal_uS15_arc_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012606">
        <property type="entry name" value="Ribosomal_uS15_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009068">
        <property type="entry name" value="uS15_NS1_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006331">
        <property type="entry name" value="PRK08561.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11885">
        <property type="entry name" value="RIBOSOMAL PROTEIN S15P/S13E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11885:SF6">
        <property type="entry name" value="SMALL RIBOSOMAL SUBUNIT PROTEIN US15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08069">
        <property type="entry name" value="Ribosomal_S13_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00312">
        <property type="entry name" value="Ribosomal_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01386">
        <property type="entry name" value="Ribosomal_S13_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01387">
        <property type="entry name" value="Ribosomal_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47060">
        <property type="entry name" value="S15/NS1 RNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00362">
        <property type="entry name" value="RIBOSOMAL_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Small ribosomal subunit protein uS15 N-terminal" evidence="7">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="151" mass="17573" checksum="E2E55DCAE0113D21" modified="2008-05-20" version="1">MPHRSRSKRGRSRSVRPAHPTVPTWIQYTPDEVEQLAVELARRGFRPSQIGLILRDQYGIPLVKPITGKKLTRILAEHGVRQELPEDLLNLIRRALRIRKHLEEHPKDMSSRRGLQLVESKIHRLVKYYKRVGKLPPDFVYNPEALSHLAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="102" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDE6</accession>
    <name>B1YDE6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">NAD-dependent protein deacylase</fullName>
            <ecNumber evidence="5">2.3.1.286</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Regulatory protein SIR2 homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">cobB</name>
        <name evidence="8" type="ordered locus">Tneu_0872</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form. Deacetylates the N-terminal lysine residue of Alba, the major archaeal chromatin protein and that, in turn, increases Alba's DNA binding affinity, thereby repressing transcription.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>N(6)-acetyl-L-lysyl-[protein] + NAD(+) + H2O = 2''-O-acetyl-ADP-D-ribose + nicotinamide + L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:43636"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:10731"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:61930"/>
            <dbReference type="ChEBI" id="CHEBI:83767"/>
            <dbReference type="EC" id="2.3.1.286"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>N(6)-succinyl-L-lysyl-[protein] + NAD(+) + H2O = 2''-O-succinyl-ADP-D-ribose + nicotinamide + L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:47668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:11877"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:87830"/>
            <dbReference type="ChEBI" id="CHEBI:87832"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="5">2 residues (Tyr-67 and Arg-70) present in a large hydrophobic pocket are probably involved in substrate specificity. They are important for desuccinylation activity, but dispensable for deacetylation activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the sirtuin family. Class III subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.286" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350229.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDE6"/>
    <dbReference type="STRING" id="444157.Tneu_0872"/>
    <dbReference type="GeneID" id="6164493"/>
    <dbReference type="KEGG" id="tne:Tneu_0872"/>
    <dbReference type="eggNOG" id="arCOG04248">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023643_3_1_2"/>
    <dbReference type="OrthoDB" id="728at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017136">
        <property type="term" value="F:histone deacetylase activity, NAD-dependent"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036054">
        <property type="term" value="F:protein-malonyllysine demalonylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036055">
        <property type="term" value="F:protein-succinyllysine desuccinylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01412">
        <property type="entry name" value="SIRT5_Af1_CobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1600.10">
        <property type="entry name" value="SIR2/SIRT2 'Small Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1220">
        <property type="entry name" value="TPP-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01121">
        <property type="entry name" value="Sirtuin_ClassIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050134">
        <property type="entry name" value="NAD-dep_sirtuin_deacylases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003000">
        <property type="entry name" value="Sirtuin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026591">
        <property type="entry name" value="Sirtuin_cat_small_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027546">
        <property type="entry name" value="Sirtuin_class_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026590">
        <property type="entry name" value="Ssirtuin_cat_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001753">
        <property type="entry name" value="PRK00481.1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040867">
        <property type="entry name" value="prot_deacyl_CobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11085">
        <property type="entry name" value="NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11085:SF10">
        <property type="entry name" value="NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02146">
        <property type="entry name" value="SIR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="DHS-like NAD/FAD-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50305">
        <property type="entry name" value="SIRTUIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 5" id="KW-0520">NAD</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 5" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Deacetylase sirtuin-type" evidence="7">
        <location>
            <begin position="1"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="5 6">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="23"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="101"/>
            <end position="104"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="187"/>
            <end position="189"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="213"/>
            <end position="215"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="251" mass="27455" checksum="C58050B60C50DFE8" modified="2008-05-20" version="1">MDAPLPKAAEALLRARFCVVFTGAGVSAESGIPTFRGAGGLWERYRAEDLATPEAFARDPKLVWEWYRWRQTLAYNARPNPAHYAIAQLEEAGLVKAVITQNVDGLHQRAGSRRVVELHGSLWRARCVQCGAVYKLEKPVEETPPRCPRCRGLLRPDVVWFGEPLPREAWEEAVQLASSADVVLVVGTSGAVYPAAAIPQIAKRRGAAVVEVNVEKSALTAIADVFIRGKAGEVLPALVEEVRRGLGTRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDF5</accession>
    <name>B1YDF5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">5'-nucleotidase SurE</fullName>
            <ecNumber evidence="4">3.1.3.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Nucleoside 5'-monophosphate phosphohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">surE</name>
        <name evidence="6" type="ordered locus">Tneu_0881</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a ribonucleoside 5'-phosphate + H2O = a ribonucleoside + phosphate</text>
            <dbReference type="Rhea" id="RHEA:12484"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18254"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58043"/>
            <dbReference type="EC" id="3.1.3.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="4">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the SurE nucleotidase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.5" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350238.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDF5"/>
    <dbReference type="STRING" id="444157.Tneu_0881"/>
    <dbReference type="GeneID" id="6164630"/>
    <dbReference type="KEGG" id="tne:Tneu_0881"/>
    <dbReference type="eggNOG" id="arCOG02303">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045192_1_3_2"/>
    <dbReference type="OrthoDB" id="26873at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008253">
        <property type="term" value="F:5'-nucleotidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1210.10">
        <property type="entry name" value="Survival protein SurE-like phosphatase/nucleotidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00060">
        <property type="entry name" value="SurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030048">
        <property type="entry name" value="SurE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002828">
        <property type="entry name" value="SurE-like_Pase/nucleotidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036523">
        <property type="entry name" value="SurE-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00087">
        <property type="entry name" value="surE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30457">
        <property type="entry name" value="5'-NUCLEOTIDASE SURE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30457:SF0">
        <property type="entry name" value="PHOSPHATASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G01070)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01975">
        <property type="entry name" value="SurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64167">
        <property type="entry name" value="SurE-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Survival protein SurE-like phosphatase/nucleotidase" evidence="5">
        <location>
            <begin position="3"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="249" mass="26614" checksum="D6DA07DBB6A669D5" modified="2008-05-20" version="1">MKIVVTNDDGPHTPYLQPLVEALTSAGHAVVVVVPERPRSAAGLARTYHKPLRVRRLGNYYVVNGYPADAVFLALRLVAPDADLVLSGVNVGENIGVEATYGSGTVGAAIQGGVLGARSIAISMEAGGDLGLMTKVAVEAVEASSHIPRGVLAVSLNIPGEWSGGVYCARRLARAVYRERLYEGVDPRGERFYWRWGPRAEVFEPETDAYFFYGERGVTIVGVTETGLVQLDAFGRKLGAGLGAKHIYC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDG0</accession>
    <name>B1YDG0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0886</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350243.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDG0"/>
    <dbReference type="STRING" id="444157.Tneu_0886"/>
    <dbReference type="GeneID" id="6164327"/>
    <dbReference type="KEGG" id="tne:Tneu_0886"/>
    <dbReference type="eggNOG" id="arCOG05698">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2021637_0_0_2"/>
    <dbReference type="OrthoDB" id="27652at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="120" mass="13834" checksum="00F38095031FC44A" modified="2008-05-20" version="1">MRFLTSLARAVEQLERVAQKYDDEELRALAADLYKQLTVVVNLLEKIYLIYTELDMLVKTDLKLEPGLYIDAPQQPEKLADFIERARREGHDPNKAVAYLLGAGVAQLEVRDGELYIRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDI3</accession>
    <name>B1YDI3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Fmu (Sun) domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0909</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350266.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDI3"/>
    <dbReference type="STRING" id="444157.Tneu_0909"/>
    <dbReference type="GeneID" id="6164605"/>
    <dbReference type="KEGG" id="tne:Tneu_0909"/>
    <dbReference type="eggNOG" id="arCOG00975">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005316_7_6_2"/>
    <dbReference type="OrthoDB" id="14725at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001510">
        <property type="term" value="P:RNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049560">
        <property type="entry name" value="MeTrfase_RsmB-F_NOP2_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001678">
        <property type="entry name" value="MeTrfase_RsmB-F_NOP2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023267">
        <property type="entry name" value="RCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054728">
        <property type="entry name" value="RsmB-like_ferredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22807">
        <property type="entry name" value="NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22807:SF70">
        <property type="entry name" value="TRNA_RRNA CYTOSINE-C5-METHYLASE, NOL1_NOP2_SUN FAMILY, FUSED TO N-TERMINAL NUSB REGULATOR DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01189">
        <property type="entry name" value="Methyltr_RsmB-F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22458">
        <property type="entry name" value="RsmF-B_ferredox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02008">
        <property type="entry name" value="RCMTFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51686">
        <property type="entry name" value="SAM_MT_RSMB_NOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SAM-dependent MTase RsmB/NOP-type" evidence="5">
        <location>
            <begin position="153"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="416" mass="46505" checksum="A4E242A0F6C9E1CA" modified="2008-05-20" version="1">MTWTADELAAFIAKVLHEVTKNGLTLDYAFQKVKRGWRRLDSFKVFYDASFDAVRHYFLLRHLASALLGSTSAKAVARTWFVYRADKLLYNRDLVERYRRRVLKRARARPEEALASLEALRGDLPRYLSVKYSYHPAIVKTLLANLPPEEVERILDAGNNTWIWLRVNTLKTDVDKALKMLEREAEVEPHPRIPFALLLKKAKRPVQYLTAVRTFAAVPQDLASIYAVLSLDPAPGEKILDLAAAPGMKTSLIVQLAEGRAKVVAADFSAKRVARMKHLLKALGAGDAVEVVRADSRRLKTRRFDKALLDAPCTSSGAFTKEPAVKIYPRVEEAPRYGTLQRELLANALSLAEQVVYAVCSIMPQEGEEVVASAPAKAEKPHPDLAPAYRGGPGGRTFPHIHKSEAFYIALVQKNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDI4</accession>
    <name>B1YDI4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0910</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350267.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDI4"/>
    <dbReference type="STRING" id="444157.Tneu_0910"/>
    <dbReference type="GeneID" id="6164553"/>
    <dbReference type="KEGG" id="tne:Tneu_0910"/>
    <dbReference type="eggNOG" id="arCOG03754">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_526424_0_0_2"/>
    <dbReference type="OrthoDB" id="46247at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="508" mass="55948" checksum="27A6755F80329E59" modified="2008-05-20" version="1">MRKVWLIGVLAAALVATFVISSTVGDPPGVHIRLKLYDGGKPADYLLQRGDVSVVALVYGIDPPSRNESRVVFFNGTARGGSIYIPAAKLREWARRWAEWRRGDVKDFRTALFITVAVVNKTSHKPIYLVIDNIDISPADVEMVNIYTIHMERGVRNAVKVEKTQKPPPLIPTGTVAAYVATPEPTLEYISEVLIYRVATEDLAKLYPSTYFKTADGKLYMKIPAVVAYNKYTYSGTIAISFRAVRTDVQFGIYPTFGFGDNLAEKLKSNILPSVTIWKGSVFSWGDRAVYSASLVLGPERRGWIWLWGRVVSEGYQVYYCAAIMGCEYLGDKITNYVSEVRTYYLGSSKYIDGGFEYSYPSEIMSRFFDGNTLALVGTTSGALVDTFLSPGETAEFADIFKTFDTCGADFEVGLPVGAILSDAACGAITRGAASTACRVLLSGFDVSLSASGPSIYIDGWVTNHGDHPDVSNDYNVREYVYIATSKFKYSSGLCQYEVPAGLYIETH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDM4</accession>
    <name>B1YDM4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0952</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350307.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDM4"/>
    <dbReference type="STRING" id="444157.Tneu_0952"/>
    <dbReference type="GeneID" id="6164452"/>
    <dbReference type="KEGG" id="tne:Tneu_0952"/>
    <dbReference type="eggNOG" id="arCOG04236">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_48_1_2"/>
    <dbReference type="OrthoDB" id="18492at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050153">
        <property type="entry name" value="Metal_Ion_Import_ABC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42734">
        <property type="entry name" value="METAL TRANSPORT SYSTEM ATP-BINDING PROTEIN TM_0124-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="228" mass="24264" checksum="07E4152622806169" modified="2008-05-20" version="1">MLVVEGLSVWVGGRELLRGVSFSAARGEAVYILGPNGVGKSSLLKALMGIPGYEAPEGRVLLDCEDLSRLRPHERAARGLALAFQTPPRLQGVRVGALLGNICRKWGCDVREVARAVEVEHLLEREVGRLSGGEGKRVELATVLARRPKAALVDEPDSGVDVDSLQVVARALRKLAEEAALVVVTHGAHIARHLPPDKVCVLYGGGLRRCGGRELAEEVLAHGFAGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDP6</accession>
    <name>B1YDP6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid permease-associated region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0974</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350329.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDP6"/>
    <dbReference type="STRING" id="444157.Tneu_0974"/>
    <dbReference type="GeneID" id="6164647"/>
    <dbReference type="KEGG" id="tne:Tneu_0974"/>
    <dbReference type="eggNOG" id="arCOG00009">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007946_15_12_2"/>
    <dbReference type="OrthoDB" id="43026at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1740.10">
        <property type="entry name" value="Amino acid/polyamine transporter I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002293">
        <property type="entry name" value="AA/rel_permease1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050367">
        <property type="entry name" value="APC_superfamily"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42770">
        <property type="entry name" value="AMINO ACID TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42770:SF7">
        <property type="entry name" value="MEMBRANE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13520">
        <property type="entry name" value="AA_permease_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006060">
        <property type="entry name" value="AA_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="86"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="120"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="152"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="190"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="223"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="268"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="318"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="341"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="382"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="407"/>
            <end position="424"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="438" mass="46584" checksum="4889D7F0ED979A76" modified="2008-05-20" version="1">MALARSWLRRRLGVFDMYALVHSDSQSTYYFLLGFIALYAGEYAFFGAIYGVLLMAAIAVTYGEMGSRFPETGGSYLYIKSAFGPTLAYISAWLIAFDQIVMVAYGTIDAAKTINKTLGLGIHEAALAAAFTTALFALTVVGIRESANFAKAVAAVDLAVMPALIIWALATHPAPPPHFGWAGVEGASLLFALSLLSRGFTGVDAIGQLAGEAREPLVQVPKATALVVAVGAFFGLGLTAALMSALRPEELADPAVAPLYLAAKVNPALAYAVALNLFLVMITAALAGYVSFSRLVYMMAEEGHLPGILGRLHRRFRTPHVSLLLVYTISLLLIAPGEIEIILAIYAVGSLLNYLLVAAALAKLSRSGDLYSAFRTPKVAGVPLSAAAALVLLPLGIGLTVLEKYRYLWALALWLGAGLALLYLTKRRDPRRRAVGAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDP9</accession>
    <name>B1YDP9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Sulfate ABC transporter, permease protein, putative</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_0977</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350332.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDP9"/>
    <dbReference type="STRING" id="444157.Tneu_0977"/>
    <dbReference type="GeneID" id="6164543"/>
    <dbReference type="KEGG" id="tne:Tneu_0977"/>
    <dbReference type="eggNOG" id="arCOG00164">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1145255_0_0_2"/>
    <dbReference type="OrthoDB" id="29211at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30183">
        <property type="entry name" value="MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30183:SF3">
        <property type="entry name" value="MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="37"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="106"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="180"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="205"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="233" mass="24422" checksum="C41D07A93A0DBD00" modified="2008-05-20" version="1">MLSFVALALAAVVFVALLLFILPVAYLGAPPPGFAEVFLLTALFSGAAAGLGLLPGLAVAVWGRGGWRAAVAQILYAPAVVPPTAVGVLLLAAFRNPLLPEWLYGFFVNKAAGVLLAMFVMALPVSYAVFDGALKDVRAELYFRSLGLGGLRLLAALLLSLRRAAAAAFLLSFLRGFGELGVLLIFASYPPTMSIYIYQAFLQEGLGATVAASMAVAALGVSTAYLLRLWLSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDQ2</accession>
    <name>B1YDQ2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0982</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350335.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDQ2"/>
    <dbReference type="STRING" id="444157.Tneu_0982"/>
    <dbReference type="GeneID" id="6165285"/>
    <dbReference type="KEGG" id="tne:Tneu_0982"/>
    <dbReference type="eggNOG" id="arCOG08858">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1418741_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="entry name" value="Immunoglobulins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="169" mass="17737" checksum="B945386DD804BA4F" modified="2008-05-20" version="1">MKSTITIAALAIVLAVAFAIWQETATISVNAQTGYLDADFQNVQVDRSPYVTAEAKTAGSDAGNDGPPSLTVTVTNAYPGASVTVSFDVYNDGTIPLRFRWTACTISGDTGYLKVSGMPTSDTTLDLGATQKVTLTITAADNVEEQKTYSLTIQCPYQQAVPVASGPSQ</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDX0</accession>
    <name>THI4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Thiamine thiazole synthase</fullName>
            <ecNumber evidence="1">2.4.2.59</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">thi4</name>
        <name type="ordered locus">Tneu_1052</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>hydrogen sulfide + glycine + NAD(+) = ADP-5-ethyl-4-methylthiazole-2-carboxylate + nicotinamide + 3 H2O + H(+)</text>
            <dbReference type="Rhea" id="RHEA:55704"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
            <dbReference type="ChEBI" id="CHEBI:29919"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:139151"/>
            <dbReference type="EC" id="2.4.2.59"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; thiamine diphosphate biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homooctamer; tetramer of dimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the THI4 family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.59" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350403.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDX0"/>
    <dbReference type="SMR" id="B1YDX0"/>
    <dbReference type="STRING" id="444157.Tneu_1052"/>
    <dbReference type="GeneID" id="6164400"/>
    <dbReference type="KEGG" id="tne:Tneu_1052"/>
    <dbReference type="eggNOG" id="arCOG00574">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053727_2_0_2"/>
    <dbReference type="OrthoDB" id="4240at2157"/>
    <dbReference type="UniPathway" id="UPA00060"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016763">
        <property type="term" value="F:pentosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052837">
        <property type="term" value="P:thiazole biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00304">
        <property type="entry name" value="Thi4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002922">
        <property type="entry name" value="Thi4_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022828">
        <property type="entry name" value="Thi4_prok"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00292">
        <property type="entry name" value="sulfide-dependent adenosine diphosphate thiazole synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43422">
        <property type="entry name" value="THIAMINE THIAZOLE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43422:SF3">
        <property type="entry name" value="THIAMINE THIAZOLE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01946">
        <property type="entry name" value="Thi4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00419">
        <property type="entry name" value="ADXRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0520">NAD</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000115615" description="Thiamine thiazole synthase">
        <location>
            <begin position="1"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <note>ligand shared between two adjacent protomers</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <begin position="52"/>
            <end position="53"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <note>ligand shared between two adjacent protomers</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <note>ligand shared between two adjacent protomers</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <note>ligand shared between two adjacent protomers</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="152"/>
            <end position="154"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <note>ligand shared between two adjacent protomers</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <note>ligand shared between two adjacent protomers</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <note>ligand shared between two adjacent protomers</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <note>ligand shared between two adjacent protomers</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>glycine</name>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00304"/>
        </source>
    </evidence>
    <sequence length="259" mass="27715" checksum="C3B3842342391BB8" modified="2008-05-20" version="1">MELKIARAIIKHGLEDLYEYSEVDVAVVGAGPAGLTAARYLAERGHRVVVYERRFSFGGGIGPGGNMIPKIVVQEEAVPVLKDFRVRYRPVGDGLYTVDPAELIAKLAAGAIDAGAKIILGVHVDDVIFRGDPPRVAGLLWVWTPIQMSGSHVDPLYTQARAVLDATGHDAEVISIASRKVPELGVEVRGEKSAWAEVSEKLVVEHTGRVAPGLYAAGMAVCAVHGLPRMGPIFGGMLLSGRRAAEIIHKDLVEYAVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDY2</accession>
    <name>B1YDY2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1064</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDY2"/>
    <dbReference type="STRING" id="444157.Tneu_1064"/>
    <dbReference type="KEGG" id="tne:Tneu_1064"/>
    <dbReference type="eggNOG" id="arCOG01500">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_985597_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd10551">
        <property type="entry name" value="PsrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050954">
        <property type="entry name" value="ET_IronSulfur_Cluster-Binding"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43177">
        <property type="entry name" value="PROTEIN NRFC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43177:SF3">
        <property type="entry name" value="PROTEIN NRFC HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13247">
        <property type="entry name" value="Fer4_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="264"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="45"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="78"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="290" mass="31502" checksum="17A7B3B103400916" modified="2008-05-20" version="1">MATIEDLCMLCWACVAACKQEFDVPLGKWRLFITEHYAGEYPNVVGYILHLPQCNHCENAPCVNSCPTGALRHNPETGIVQLDKDLCIGCRACTRACPYNAVYIDPRTNKADKCTFCEHLVYSGLLPACVAACPTGARIFGDIEDPNSLIGKLYREGRIKPVGKVAEVVKPRLFFAPFGAERPINTDAGAFKKVVTAEASNRALVDTVVDLSTWNPNADPALQPGAHPEWSPEPNALGLWKQYRPTKDPSTAELSNAVRDTRQALVYAAIALLVIAGAGAVWTGLIKPAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDY3</accession>
    <name>B1YDY3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1065</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350415.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDY3"/>
    <dbReference type="STRING" id="444157.Tneu_1065"/>
    <dbReference type="GeneID" id="6164302"/>
    <dbReference type="KEGG" id="tne:Tneu_1065"/>
    <dbReference type="eggNOG" id="arCOG09851">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1811526_0_0_2"/>
    <dbReference type="OrthoDB" id="26278at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="142" mass="16464" checksum="B7CD8BFDDA1D3F89" modified="2008-05-20" version="1">MSLDEKMQYVQGYGVLVAVRQLARLLSAPAKAGFYISVPDVLEIAESLGVPAMPRNERQWFFEEVMKAALDMEKLDAFLNELSKLIDERAREVATYVNKYPRAGEYLRWSLERAEELKKRIRETARIYQGFLRLKKEYGEPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE22</accession>
    <name>B1YE22_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1104</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350454.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE22"/>
    <dbReference type="STRING" id="444157.Tneu_1104"/>
    <dbReference type="GeneID" id="6165472"/>
    <dbReference type="KEGG" id="tne:Tneu_1104"/>
    <dbReference type="eggNOG" id="arCOG07429">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1745617_0_0_2"/>
    <dbReference type="OrthoDB" id="29251at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="149" mass="16903" checksum="ED9249B9D8DCAA8D" modified="2008-05-20" version="1">MAEKFDRYYEYYSRRRRGPRTINLGLVKLNLGGRPSIEVRGIPRRPRGPPGGTTLETAEGEDVALKNAVVQRVAGRRVKLYNCDADYVEGEEVTLINTHAKEVTATRAKLINSHVKVLRYRESYTATNSVVEKPEKIAEHQRGRPQTPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="37" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8J7</accession>
    <name>B1Y8J7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1146</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350495.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8J7"/>
    <dbReference type="STRING" id="444157.Tneu_1146"/>
    <dbReference type="GeneID" id="6165850"/>
    <dbReference type="KEGG" id="tne:Tneu_1146"/>
    <dbReference type="eggNOG" id="arCOG10121">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1792202_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="144" mass="15684" checksum="A4BA0C0009BD9545" modified="2008-05-20" version="1">MLWIDSAGLYYLLNANPNGAMMLIKYIYENSGGLKIGLLADGDKTTSKCRGGCTDRKAMAVLVFLAGAGLAVNCIWCVKHVNCDHVCVNKHELYTALCQCDPGEEFIIAQCNCTYGEGAVFQEGANVADCQKPMRCFCHLSCKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8S2</accession>
    <name>B1Y8S2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1224</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350570.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8S2"/>
    <dbReference type="STRING" id="444157.Tneu_1224"/>
    <dbReference type="GeneID" id="6166187"/>
    <dbReference type="KEGG" id="tne:Tneu_1224"/>
    <dbReference type="eggNOG" id="arCOG05607">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_181232_0_0_2"/>
    <dbReference type="OrthoDB" id="28635at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="99" mass="10937" checksum="7C2E5ECA3D3812EE" modified="2008-05-20" version="1">MLDGAASELLKKVSEACRDEAFYRAHRDICIAARLALLNVKGGGVKLRPSLLRLESLSDKKAASYVLREIRREVGPVTDGESLKRAAAALVYRRLAERL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8V2</accession>
    <name>RL18_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein uL18</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L18</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl18</name>
        <name type="ordered locus">Tneu_1254</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">This is one of the proteins that bind and probably mediate the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit. Contacts the 5S and 23S rRNAs.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL18 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350600.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8V2"/>
    <dbReference type="SMR" id="B1Y8V2"/>
    <dbReference type="STRING" id="444157.Tneu_1254"/>
    <dbReference type="GeneID" id="6165968"/>
    <dbReference type="KEGG" id="tne:Tneu_1254"/>
    <dbReference type="eggNOG" id="arCOG04088">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056222_2_0_2"/>
    <dbReference type="OrthoDB" id="8644at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008097">
        <property type="term" value="F:5S rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000027">
        <property type="term" value="P:ribosomal large subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00432">
        <property type="entry name" value="Ribosomal_L18_L5e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.100:FF:000008">
        <property type="entry name" value="50S ribosomal protein L18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01337_A">
        <property type="entry name" value="Ribosomal_uL18_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057267">
        <property type="entry name" value="Rbsml_uL18_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005485">
        <property type="entry name" value="Rbsml_uL18_euk_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057268">
        <property type="entry name" value="Ribosomal_L18"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006342">
        <property type="entry name" value="PRK08569.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23410:SF12">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23410">
        <property type="entry name" value="RIBOSOMAL PROTEIN L5-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17144">
        <property type="entry name" value="Ribosomal_L5e"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53137">
        <property type="entry name" value="Translational machinery components"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000142729" description="Large ribosomal subunit protein uL18">
        <location>
            <begin position="1"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="205" mass="23206" checksum="05D96E5FE6E84462" modified="2008-05-20" version="1">MARGPRYKVPFRRRREGLTNYRKRRRLILSRKPRLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLVAGYKARLRGVREAVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEVLPEDDRVSGKHVAEYAAKLKEENPELYKARFSRYLQRGVQPEDLPKHFEEVKKKIVEHYEAKLAKAVAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Z9</accession>
    <name>B1Y8Z9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glutamate dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1301</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Homohexamer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 8">Belongs to the Glu/Leu/Phe/Val dehydrogenases family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350647.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Z9"/>
    <dbReference type="STRING" id="444157.Tneu_1301"/>
    <dbReference type="GeneID" id="6165624"/>
    <dbReference type="KEGG" id="tne:Tneu_1301"/>
    <dbReference type="eggNOG" id="arCOG01352">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025763_1_2_2"/>
    <dbReference type="OrthoDB" id="6425at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030554">
        <property type="term" value="F:adenyl nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043168">
        <property type="term" value="F:anion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004352">
        <property type="term" value="F:glutamate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006103">
        <property type="term" value="P:2-oxoglutarate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006538">
        <property type="term" value="P:L-glutamate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01076">
        <property type="entry name" value="NAD_bind_1_Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:001273">
        <property type="entry name" value="Glutamate dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10860">
        <property type="entry name" value="Leucine Dehydrogenase, chain A, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminoacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006095">
        <property type="entry name" value="Glu/Leu/Phe/Val/Trp_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006096">
        <property type="entry name" value="Glu/Leu/Phe/Val/Trp_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006097">
        <property type="entry name" value="Glu/Leu/Phe/Val/Trp_DH_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014362">
        <property type="entry name" value="Glu_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033922">
        <property type="entry name" value="NAD_bind_Glu_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11606">
        <property type="entry name" value="GLUTAMATE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11606:SF13">
        <property type="entry name" value="GLUTAMATE DEHYDROGENASE 1, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00208">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02812">
        <property type="entry name" value="ELFV_dehydrog_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000185">
        <property type="entry name" value="Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00082">
        <property type="entry name" value="GLFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00839">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="Aminoacid dehydrogenase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0520">NAD</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 4 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase C-terminal" evidence="9">
        <location>
            <begin position="188"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="5">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="360"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="7">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="427" mass="47276" checksum="4ACE34BB3ECC4600" modified="2008-05-20" version="1">MAHASWAYTISAFLENTILMVKRGVELANLPPEFFEMMARPQRILIVNIPVKMDNGRYEVFEGYRVQHNGALGPYKGGIRFHPEVTLADDIALATLMTLKNSLAGLPYGGAKGAVRVDPKRLSPRELEELSRGYARAIAPLIGETVDIPAPDVGTNAQIMAWMVDEYSKLRGYNVPAVFTSKPPQLWGNPVREYATGFGVAVAAREMARRLWGGIEGRTVAVQGAGNTGAWAAYWLEKMGAKVVAISDSKGSVVNKSGIPAEDIIKIYRAKAQTRDRSVLELDGEKSKDPSLPLYMDVDIVVPAAIENVIRLDNAKLVKAKLVVEGANGPTTPEAEKALYERGTLVVPDILANAGGVIMSYLEWVENLQWFIWDEEETRKRLESIMANNVARVYNRWQSEKGWTMRDAAIVTALERIYNAMKLRGWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="37" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y917</accession>
    <name>B1Y917_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1319</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y917"/>
    <dbReference type="KEGG" id="tne:Tneu_1319"/>
    <dbReference type="eggNOG" id="arCOG12858">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3379980_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="33" mass="3952" checksum="96F98C2CEEEC5EA3" modified="2008-05-20" version="1">MEALKRCLEQLPRRPGTPHGHIIQWLIERLEET</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y919</accession>
    <name>DNAG_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA primase DnaG</fullName>
            <ecNumber evidence="1">2.7.7.101</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">dnaG</name>
        <name type="ordered locus">Tneu_1321</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteromeric, adenine-rich transcripts and the exosome.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ssDNA + n NTP = ssDNA/pppN(pN)n-1 hybrid + (n-1) diphosphate.</text>
            <dbReference type="EC" id="2.7.7.101"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds two Mg(2+) per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Forms a ternary complex with MCM helicase and DNA. Component of the archaeal exosome complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the archaeal DnaG primase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.101" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350667.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y919"/>
    <dbReference type="SMR" id="B1Y919"/>
    <dbReference type="STRING" id="444157.Tneu_1321"/>
    <dbReference type="GeneID" id="6165297"/>
    <dbReference type="KEGG" id="tne:Tneu_1321"/>
    <dbReference type="eggNOG" id="arCOG04281">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034626_0_0_2"/>
    <dbReference type="OrthoDB" id="8643at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000178">
        <property type="term" value="C:exosome (RNase complex)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008143">
        <property type="term" value="F:poly(A) binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006269">
        <property type="term" value="P:DNA replication, synthesis of primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01029">
        <property type="entry name" value="TOPRIM_primases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1360.10:FF:000010">
        <property type="entry name" value="DNA primase DnaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1360.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00007">
        <property type="entry name" value="DNA_primase_DnaG_arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050219">
        <property type="entry name" value="DnaG_primase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020607">
        <property type="entry name" value="Primase_DnaG_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034154">
        <property type="entry name" value="TOPRIM_DnaG/twinkle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003108">
        <property type="entry name" value="PRK04031.1-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30313">
        <property type="entry name" value="DNA PRIMASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30313:SF2">
        <property type="entry name" value="DNA PRIMASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13662">
        <property type="entry name" value="Toprim_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56731">
        <property type="entry name" value="DNA primase core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0235">DNA replication</keyword>
    <keyword id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword id="KW-0271">Exosome</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword id="KW-0639">Primosome</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0804">Transcription</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000089138" description="DNA primase DnaG">
        <location>
            <begin position="1"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="domain" description="Toprim" evidence="1">
        <location>
            <begin position="172"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="279"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="403" mass="44743" checksum="8F4A0F35F965350A" modified="2008-05-20" version="1">MGALTIVAKYMIVAQIEVNGSVDKSDIIGALFSQTEGLLGKDMDLRELQMMGRIGRIEVDIFEKNSKTKAKIYIPSNLDRYETALVAALIESIERVGPYLANIKVLEIKDLREEKRRRIIEKAKELVKMIEEEILPDTKEIIEKLKEDVAKAEIVEYGPEKLPAGPDVEKSDSVIIVEGRADVVNLVKHGYRNVIAIEGISRGIPQTVIDLSKKKSVTVFIDGDKGGELVLRELLKVAHIDYIARAPPGKEVEQLTAKEIAKALRNKVTLEEWLAQQKAAGEKTEAPAQPTQQQPPPAEAPIQFPFDMSKKVEEMLGTLEAEIYDANWGLVKKLPVRELPDFLTGEGDSFYAIVMDGIVTQRIVDLAAKKGVKVIVTARVGPLTKVPEDMKIITFEKLTQKVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y926</accession>
    <name>B1Y926_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type II secretion system protein E</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1329</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350674.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y926"/>
    <dbReference type="STRING" id="444157.Tneu_1329"/>
    <dbReference type="GeneID" id="6165260"/>
    <dbReference type="KEGG" id="tne:Tneu_1329"/>
    <dbReference type="eggNOG" id="arCOG05558">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_828000_0_0_2"/>
    <dbReference type="OrthoDB" id="31341at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050921">
        <property type="entry name" value="T4SS_GSP_E_ATPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30486">
        <property type="entry name" value="TWITCHING MOTILITY PROTEIN PILT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30486:SF6">
        <property type="entry name" value="TYPE IV PILUS RETRACTATION ATPASE PILT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="2">
        <location>
            <begin position="199"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="342" mass="39171" checksum="1006A4AFF2D80D51" modified="2008-05-20" version="1">MYQLLTRILECAECRYSCREKGLCNFTEEEIEDVVKLASRIFKRDLDATLDFRYGLFKKIKGSAALRATLATVGLEELAPYLEQDDVEDLLLIPGRPIYITRRSGKEKGQEVATLRLVKNLMRLAYLKGVELTTATPSLRFGIRIGEVRMRISLDLPPVVPSPQAYVRIHRKKLRIGDLLKSGFLTLEQLQEIYRYVREGKHIVVTGPPGSGKTTLLVALDDIIPPNLQRVYIDEADEFEEDPDKNQIKIHNVNKMREVYASLNRNIDVIFVGELQYEDHFHAFRTATEMGIQTLATMHSTSVEGALRRLAKYVEVENTAIIQLSKTYGKRIERRVIDIYVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y928</accession>
    <name>B1Y928_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1331</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350676.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y928"/>
    <dbReference type="STRING" id="444157.Tneu_1331"/>
    <dbReference type="GeneID" id="6165209"/>
    <dbReference type="KEGG" id="tne:Tneu_1331"/>
    <dbReference type="eggNOG" id="arCOG04271">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_169407_0_0_2"/>
    <dbReference type="OrthoDB" id="26752at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="104" mass="11736" checksum="1096D61E90E04FC4" modified="2008-05-20" version="1">MEFLLEVSDITNDLPNVIKLSGEVNATIEIPLERLGVSLQKGDKVKLVIQREKDQDMKKYKIYAWGIVYYIGDGITRISIGGLQLDIMKELPLQIGDKVYIGII</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y959</accession>
    <name>B1Y959_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF2286 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1362</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350707.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y959"/>
    <dbReference type="STRING" id="444157.Tneu_1362"/>
    <dbReference type="GeneID" id="6164445"/>
    <dbReference type="KEGG" id="tne:Tneu_1362"/>
    <dbReference type="eggNOG" id="arCOG04251">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_126372_0_0_2"/>
    <dbReference type="OrthoDB" id="15027at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017006">
        <property type="entry name" value="UCP032756"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10051">
        <property type="entry name" value="DUF2286"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="135" mass="15064" checksum="F9976FEB6EC83ACD" modified="2008-05-20" version="1">MSVVAKISKGAVLNKEVVNKDVFNAVKDVAAELLKSWDPTASDFIVLRDFYSVSYPAPLPRELLEKVRKYSPKRIEDKVEVTLPIFEIVHGAQWAGENLQVGDATVVFPYIDDATTDEILRGVVTNLTAEEEELE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y968</accession>
    <name>B1Y968_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1371</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350716.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y968"/>
    <dbReference type="STRING" id="444157.Tneu_1371"/>
    <dbReference type="GeneID" id="6164670"/>
    <dbReference type="KEGG" id="tne:Tneu_1371"/>
    <dbReference type="eggNOG" id="arCOG05566">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_926282_0_0_2"/>
    <dbReference type="OrthoDB" id="27817at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="308" mass="33702" checksum="FE18F55590C56E8A" modified="2008-05-20" version="1">MICTTLSECLEFAKPKKVLAVSSPLGGLGVLALAQRVKLSVVTSGPVFNKVAVLEAMDNYGAEVRYAPRLHTALYKLEGDRECLAAGPPLVRSVALGNSTAVSIYSCSKVEGLEKLFTGGKPIEMLNSKVIGGGRDGRYFDVITRLRSLRVDKDDEEDIADWVIRSGAFDVDDPDAVSHLMWRLISHLRNRSAVIFRDPVVGLGLTIPMVYYAVRVAAAGQDCPQGRCIKTTAKLLERALRMAPPAKIHDEWRVALREPQTRRKIEESPYIPAVLMLTGKVEVKHDAATSSRLYIFSRSPADLSPGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="93" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y986</accession>
    <name>B1Y986_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Proteasome subunit alpha</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">20S proteasome alpha subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Proteasome core protein PsmA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">psmA</name>
        <name evidence="8" type="ordered locus">Tneu_1390</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 6">Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.</text>
    </comment>
    <comment type="activity regulation">
        <text evidence="4">The formation of the proteasomal ATPase PAN-20S proteasome complex, via the docking of the C-termini of PAN into the intersubunit pockets in the alpha-rings, triggers opening of the gate for substrate entry. Interconversion between the open-gate and close-gate conformations leads to a dynamic regulation of the 20S proteasome proteolysis activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 6">The 20S proteasome core is composed of 14 alpha and 14 beta subunits that assemble into four stacked heptameric rings, resulting in a barrel-shaped structure. The two inner rings, each composed of seven catalytic beta subunits, are sandwiched by two outer rings, each composed of seven alpha subunits. The catalytic chamber with the active sites is on the inside of the barrel. Has a gated structure, the ends of the cylinder being occluded by the N-termini of the alpha-subunits. Is capped at one or both ends by the proteasome regulatory ATPase, PAN.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 4 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 5 6">Belongs to the peptidase T1A family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350734.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y986"/>
    <dbReference type="STRING" id="444157.Tneu_1390"/>
    <dbReference type="GeneID" id="6165075"/>
    <dbReference type="KEGG" id="tne:Tneu_1390"/>
    <dbReference type="eggNOG" id="arCOG00971">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035750_4_1_2"/>
    <dbReference type="OrthoDB" id="9421at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019773">
        <property type="term" value="C:proteasome core complex, alpha-subunit complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004298">
        <property type="term" value="F:threonine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010498">
        <property type="term" value="P:proteasomal protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006511">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03756">
        <property type="entry name" value="proteasome_alpha_archeal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.60.20.10:FF:000004">
        <property type="entry name" value="Proteasome subunit alpha type-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="entry name" value="Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00289_A">
        <property type="entry name" value="Proteasome_A_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050115">
        <property type="entry name" value="Proteasome_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023332">
        <property type="entry name" value="Proteasome_alpha-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019982">
        <property type="entry name" value="Proteasome_asu_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000426">
        <property type="entry name" value="Proteasome_asu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001353">
        <property type="entry name" value="Proteasome_sua/b"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03633">
        <property type="entry name" value="arc_protsome_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003075">
        <property type="entry name" value="PRK03996.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11599">
        <property type="entry name" value="PROTEASOME SUBUNIT ALPHA/BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00227">
        <property type="entry name" value="Proteasome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10584">
        <property type="entry name" value="Proteasome_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00948">
        <property type="entry name" value="Proteasome_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00388">
        <property type="entry name" value="PROTEASOME_ALPHA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51475">
        <property type="entry name" value="PROTEASOME_ALPHA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 4 5" id="KW-0647">Proteasome</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Proteasome alpha-type subunits" evidence="7">
        <location>
            <begin position="9"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS00388"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="241" mass="26251" checksum="0D606502D4423D10" modified="2008-05-20" version="1">MFPPAMAGYDRAITIFSPEGKIYQVEYAGEAVKRGWPTVGVKCRSGVVLVAEKRKISALFDPSSLEKIYLVDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPIDIELLTKAVCNLKQQYTQFGGTRPFGVALLVAGVDRHGARLFQTDPSGVYIGYFATAIGADSGTISEFLEKNYKFDLGMGECVELAVKALASAVEITESGNIEVAYATVEEKKMKKMTQEEVAALVAKLPKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9A0</accession>
    <name>B1Y9A0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">polynucleotide 5'-hydroxyl-kinase</fullName>
            <ecNumber evidence="2">2.7.1.78</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1404</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of both single-stranded RNA (ssRNA) and single-stranded DNA (ssDNA). Exhibits a strong preference for ssRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>a 5'-end dephospho-2'-deoxyribonucleoside-DNA + ATP = a 5'-end 5'-phospho-2'-deoxyribonucleoside-DNA + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15669"/>
            <dbReference type="Rhea" id="RHEA-COMP:13180"/>
            <dbReference type="Rhea" id="RHEA-COMP:13184"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:136412"/>
            <dbReference type="ChEBI" id="CHEBI:136416"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.78"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>a 5'-end dephospho-ribonucleoside-RNA + ATP = a 5'-end 5'-phospho-ribonucleoside-RNA + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:54580"/>
            <dbReference type="Rhea" id="RHEA-COMP:13936"/>
            <dbReference type="Rhea" id="RHEA-COMP:15179"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:138282"/>
            <dbReference type="ChEBI" id="CHEBI:138284"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.78"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <dbReference type="EC" id="2.7.1.78" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350748.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9A0"/>
    <dbReference type="STRING" id="444157.Tneu_1404"/>
    <dbReference type="GeneID" id="6166191"/>
    <dbReference type="KEGG" id="tne:Tneu_1404"/>
    <dbReference type="eggNOG" id="arCOG04127">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051301_1_0_2"/>
    <dbReference type="OrthoDB" id="359472at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051734">
        <property type="term" value="F:ATP-dependent polynucleotide 5'-hydroxyl-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045116">
        <property type="entry name" value="Clp1/Grc3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032319">
        <property type="entry name" value="CLP1_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12755">
        <property type="entry name" value="CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12755:SF3">
        <property type="entry name" value="POLYNUCLEOTIDE 5'-HYDROXYL-KINASE NOL9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16575">
        <property type="entry name" value="CLP1_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Clp1 P-loop" evidence="10">
        <location>
            <begin position="98"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00044641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00044673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF16575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="425" mass="47558" checksum="5FB3994DF76FBF9B" modified="2008-05-20" version="1">MTIRVLKTGDMYRIEGPAKVVVRRGQIYATGVVYGEGQSFTVLRARRLVIKALGDSEVELVLGPGALMEKVAPQEEIVDEWERRIADVDPRGVALIIGMMDVGKSTLAAMLGNKALSRGYKVAVIDADVGQNDLGPPTTVSMARLTRYITHLRQLAAEKSIFLQSTSLERVWPRAVEQIAKAVDYARERWGVETIVINTDGWVLDEEAVAFKRKLIERLKPSLIVAIQVERELAPIIEGYGNVVVLPPPPHVRVRTREDRKIHREMGYGRYIFPPVELALSLDKTPLCNLPIFRGVELSDDLRRMLTRAVGAPVLKAFQAGGRVYAVVQSDTWSLRKVGGFQVVCLPNEFEKGLLVGLEDREGFLVGLGVLKKIYYDRRKAVVYTSSDVERRIGEVKCIRLGLVRLDENFNEVERATNLLKVEET</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9A6</accession>
    <name>B1Y9A6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NurA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1410</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350754.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9A6"/>
    <dbReference type="STRING" id="444157.Tneu_1410"/>
    <dbReference type="GeneID" id="6165332"/>
    <dbReference type="KEGG" id="tne:Tneu_1410"/>
    <dbReference type="eggNOG" id="arCOG05577">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1113912_0_0_2"/>
    <dbReference type="OrthoDB" id="25114at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018977">
        <property type="entry name" value="NurA_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09376">
        <property type="entry name" value="NurA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00933">
        <property type="entry name" value="NurA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NurA" evidence="1">
        <location>
            <begin position="40"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="249" mass="28481" checksum="3FBC105153E48368" modified="2008-05-20" version="1">MRQLLSEVLRFAELEFATPEPEPTGELVELVHACEAEESPEYYAVDSGYAVYRVGSVDVLLQSLVAVGRDVRRRFILRRVEKDHHLEARENELRFAESIGAEVVLVDGPLTPYVNISELIGVSKEPRLVRYGPRIEDPEKRRRFMKLAELLGEREAAGLLLRRAPRGSFLTPVDLGGLYGTFFKSDWVIYVEFPKKTSAERICALFKRYPIKLRLAHHLAKVSSRQANAVWTVLANVLHRPIHRPRELL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9B3</accession>
    <name>B1Y9B3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1417</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9B3"/>
    <dbReference type="STRING" id="444157.Tneu_1417"/>
    <dbReference type="KEGG" id="tne:Tneu_1417"/>
    <dbReference type="eggNOG" id="arCOG08367">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2597892_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="79" mass="8879" checksum="DEDCBB1F328EE7FE" modified="2008-05-20" version="1">MQPLDVSKKLIAIGFFLLFLSFSIALQQSYVQAHCTEGRCLDPSLVLLSFLLLIAGAAVLFYSVTLFINTKIEENLKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9B9</accession>
    <name>B1Y9B9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Plant-type L-asparaginase</fullName>
            <ecNumber evidence="1">3.5.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">L-asparagine amidohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1423</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-asparagine + H2O = L-aspartate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:21016"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:58048"/>
            <dbReference type="EC" id="3.5.1.1"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="3.5.1.1" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350767.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9B9"/>
    <dbReference type="STRING" id="444157.Tneu_1423"/>
    <dbReference type="GeneID" id="6164338"/>
    <dbReference type="KEGG" id="tne:Tneu_1423"/>
    <dbReference type="eggNOG" id="arCOG04779">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021603_1_2_2"/>
    <dbReference type="OrthoDB" id="18230at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004067">
        <property type="term" value="F:asparaginase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14950">
        <property type="entry name" value="Asparaginase_2_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.60.20.30:FF:000001">
        <property type="entry name" value="Isoaspartyl peptidase/L-asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.30">
        <property type="entry name" value="(Glycosyl)asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000246">
        <property type="entry name" value="Peptidase_T2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10188">
        <property type="entry name" value="L-ASPARAGINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10188:SF6">
        <property type="entry name" value="N(4)-(BETA-N-ACETYLGLUCOSAMINYL)-L-ASPARAGINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01112">
        <property type="entry name" value="Asparaginase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="N-terminal nucleophile aminohydrolases (Ntn hydrolases)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Nucleophile" evidence="8">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="199"/>
            <end position="202"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="222"/>
            <end position="225"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Cleavage; by autolysis" evidence="10">
        <location>
            <begin position="170"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00030414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00044776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00049366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR600246-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR600246-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR600246-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="302" mass="31692" checksum="1CD4ED99C6E4C613" modified="2008-05-20" version="1">MRPTVAVHGGAGLWNIGEEERERVKRALRDAVEEGLTAVQRGSALDAVVASVEYMEKSGVFNAGYGAAYAADGAVYLDAGVMDGRTKKAGAVAAVGAVKSAVRLARLVMEQTDHVILAGEGAMLLAARAGLLEARHRFYSEGKNRRFGEVLEEARRGRWPYRRSAGLIGDTVGAVALDREGNVAAATSTGGVWLKWPGRVGDSPIPGAGYWAENGVGAFSATGLGEAILMSHLCLRARDALVEMGDVAKAVERAVGQITEAYGSDTAGIIAVDARGNTAYAFNTKAMARGWGRPGEPIYAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9E2</accession>
    <name>B1Y9E2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1446</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350790.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9E2"/>
    <dbReference type="STRING" id="444157.Tneu_1446"/>
    <dbReference type="GeneID" id="6165054"/>
    <dbReference type="KEGG" id="tne:Tneu_1446"/>
    <dbReference type="eggNOG" id="arCOG00933">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023791_0_0_2"/>
    <dbReference type="OrthoDB" id="49555at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034471">
        <property type="entry name" value="GDGT/MA_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034474">
        <property type="entry name" value="Methyltransferase_Class_D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056488">
        <property type="entry name" value="Zn_ribbon_HMPTM"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF045702">
        <property type="entry name" value="rSAM_GDGT_ether"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43306">
        <property type="entry name" value="7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN DIMETHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43306:SF1">
        <property type="entry name" value="7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN DIMETHYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF23545">
        <property type="entry name" value="Zn_ribbon_HMPTM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00385">
        <property type="entry name" value="7_8-dihydro-6-hydroxymethylpte"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01100">
        <property type="entry name" value="methyltransferase_(Class_D)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01067">
        <property type="entry name" value="SPASM/twitch_domain_containing"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="142"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="573" mass="66101" checksum="5A186D322A5B10E1" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9E3</accession>
    <name>B1Y9E3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1447</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350791.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9E3"/>
    <dbReference type="STRING" id="444157.Tneu_1447"/>
    <dbReference type="GeneID" id="6165975"/>
    <dbReference type="KEGG" id="tne:Tneu_1447"/>
    <dbReference type="eggNOG" id="arCOG05585">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_443882_0_0_2"/>
    <dbReference type="OrthoDB" id="27930at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="588"/>
            <end position="605"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="332"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="611" mass="66275" checksum="507AA45BC5665378" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9E5</accession>
    <name>B1Y9E5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">ABC3 transporter permease protein domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1449</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ABC-4 integral membrane protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350793.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9E5"/>
    <dbReference type="STRING" id="444157.Tneu_1449"/>
    <dbReference type="GeneID" id="6166322"/>
    <dbReference type="KEGG" id="tne:Tneu_1449"/>
    <dbReference type="eggNOG" id="arCOG02312">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_718908_0_0_2"/>
    <dbReference type="OrthoDB" id="11469at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050250">
        <property type="entry name" value="Macrolide_Exporter_MacB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30572:SF4">
        <property type="entry name" value="ABC TRANSPORTER PERMEASE YTRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30572">
        <property type="entry name" value="MEMBRANE COMPONENT OF TRANSPORTER-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="246"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="291"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="342"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="domain" description="MacB-like periplasmic core" evidence="9">
        <location>
            <begin position="20"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="ABC3 transporter permease C-terminal" evidence="8">
        <location>
            <begin position="250"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00038076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="12">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="378" mass="40609" checksum="2D65D6D0C9081F3A" modified="2008-05-20" version="1">MEHILMIAVGDFKARAVRYILTALAIGVGVALLVALTAVSDATRDYVQQTLLRLYPADIMLYSESINIPMRLVDYLRGYPLVQTAEGIIITTGVYRGKVVSIVGIPLRDVDYFAVDLAAGRLPASGGEAVVEESLGVRPGDEMEIKIYSASGGEKTIKVKAVGVMRSFLRGFIGAFRLNLVVVPLDWLQSKLGTGPFVNAVLITARDKSYVAPLYQALKETYGDAQVYTQENLLQTVTQVFNALNFVFSAISGAALATAAITTFAVMSITVRERLREFGLIKAMGVPSRDLALSLLVEVFIIAAVAGAVGVLVGYFGANAVKEALVGMGVNFHVPIAFRPQYALLGMATSLAVAMAGAVAPLYKVAKLRPLEIMQLWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9E6</accession>
    <name>B1Y9E6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">SSD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1450</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. MmpL subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350794.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9E6"/>
    <dbReference type="STRING" id="444157.Tneu_1450"/>
    <dbReference type="GeneID" id="6165725"/>
    <dbReference type="KEGG" id="tne:Tneu_1450"/>
    <dbReference type="eggNOG" id="arCOG02175">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_313455_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1640.10">
        <property type="entry name" value="Multidrug efflux transporter AcrB transmembrane domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050545">
        <property type="entry name" value="Mycobact_MmpL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33406">
        <property type="entry name" value="MEMBRANE PROTEIN MJ1562-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33406:SF6">
        <property type="entry name" value="MEMBRANE PROTEIN YDGH-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82866">
        <property type="entry name" value="Multidrug efflux transporter AcrB transmembrane domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50156">
        <property type="entry name" value="SSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="356"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="398"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="450"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="478"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="534"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="676"/>
            <end position="696"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="703"/>
            <end position="722"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="734"/>
            <end position="755"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="776"/>
            <end position="805"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="811"/>
            <end position="835"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="8">
        <location>
            <begin position="710"/>
            <end position="835"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="863" mass="95141" checksum="68813325ED511896" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9G8</accession>
    <name>B1Y9G8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metal dependent phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1472</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9G8"/>
    <dbReference type="STRING" id="444157.Tneu_1472"/>
    <dbReference type="KEGG" id="tne:Tneu_1472"/>
    <dbReference type="eggNOG" id="arCOG04230">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068640_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3210.10">
        <property type="entry name" value="Hypothetical protein af1432"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039967">
        <property type="entry name" value="MJ1020-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40517">
        <property type="entry name" value="METAL-DEPENDENT PHOSPHOHYDROLASE, HD SUPERFAMILY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40517:SF1">
        <property type="entry name" value="METAL-DEPENDENT PHOSPHOHYDROLASE, HD SUPERFAMILY-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109604">
        <property type="entry name" value="HD-domain/PDEase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD/PDEase" evidence="1">
        <location>
            <begin position="54"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="273" mass="30377" checksum="33E217B3E981A9F3" modified="2008-05-20" version="1">MQTAVTYEVGVKLIEQVMPHSERVRKIWELLTTDVETQAYLKMANVFAVQRLRYNDHGPVHSRIVAGSALAIYKIFTERGFKPSVVADGVGDVEDSIVVTLMGAYLHDIGNSVHRTHHPIYSAMLVDKLAEKILSKVYGDGEKRYMLKQEVMHAVFCHDEAYTCLTFEAACAKIADGTDMSSGRARIPYRIGKSDIHALSALAIERVELAPNDSRPLAINVYMSNETGIFQVDSVLGQKIATSGLAPYVEVRAYVRGKLFAVRTFETTHVIRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9K1</accession>
    <name>B1Y9K1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">dITP/XTP pyrophosphatase</fullName>
            <ecNumber evidence="7">3.6.1.66</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Non-canonical purine NTP pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Non-standard purine NTP pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Nucleoside-triphosphate diphosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Nucleoside-triphosphate pyrophosphatase</fullName>
            <shortName evidence="7">NTPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1506</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ITP + H2O = IMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:29399"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:61402"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>XTP + H2O = XMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28610"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:61314"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>dITP + H2O = dIMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28342"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61194"/>
            <dbReference type="ChEBI" id="CHEBI:61382"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="7">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the HAM1 NTPase family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.66" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350849.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9K1"/>
    <dbReference type="STRING" id="444157.Tneu_1506"/>
    <dbReference type="GeneID" id="6164562"/>
    <dbReference type="KEGG" id="tne:Tneu_1506"/>
    <dbReference type="eggNOG" id="arCOG04184">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082080_0_2_2"/>
    <dbReference type="OrthoDB" id="372108at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035870">
        <property type="term" value="F:dITP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036220">
        <property type="term" value="F:ITP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017111">
        <property type="term" value="F:ribonucleoside triphosphate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036222">
        <property type="term" value="F:XTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009146">
        <property type="term" value="P:purine nucleoside triphosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00515">
        <property type="entry name" value="HAM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01405">
        <property type="entry name" value="Non_canon_purine_NTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020922">
        <property type="entry name" value="dITP/XTP_pyrophosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029001">
        <property type="entry name" value="ITPase-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002637">
        <property type="entry name" value="RdgB/HAM1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF011396">
        <property type="entry name" value="PRK14821.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00042">
        <property type="entry name" value="RdgB/HAM1 family non-canonical purine NTP pyrophosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11067:SF9">
        <property type="entry name" value="INOSINE TRIPHOSPHATE PYROPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11067">
        <property type="entry name" value="INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01725">
        <property type="entry name" value="Ham1p_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52972">
        <property type="entry name" value="ITPase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 7" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="7"/>
            <end position="12"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="140"/>
            <end position="143"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="168"/>
            <end position="169"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="186" mass="20379" checksum="401B3350656515CB" modified="2008-05-20" version="1">MRIRVATGNPHKISEISQILKPLGIAVERLEARKIEVQDDDVVNVAKHAAEALCRDYGDNVVVEDTGLYVDALGGFPGPYAEYVYRTIGLRGLLKLLEGVENRSAVFRCAAALCVGGDVKVFLGETRGRISEEPRGSGGFGFDPVFIPEGFDKTYAELGDEVKNRVSHRAKAFISLGNWLLTRRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9K3</accession>
    <name>B1Y9K3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1508</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350851.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9K3"/>
    <dbReference type="STRING" id="444157.Tneu_1508"/>
    <dbReference type="GeneID" id="6165752"/>
    <dbReference type="KEGG" id="tne:Tneu_1508"/>
    <dbReference type="eggNOG" id="arCOG05601">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1965645_0_0_2"/>
    <dbReference type="OrthoDB" id="27676at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="97"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="98"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="108"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="129" mass="15052" checksum="DADF209F48920A4F" modified="2008-05-20" version="1">MSTILEIQGQKGKLVVVEDPEVGHVFAVIPYGKRATPTLIRELRERTLDPWRYVEGVGFVLDLTAWKSESQLGAEEIKNKVEKYRETIDEVVQMLEEVSSRESEERKAKKKKKKRKKTAGRKRRKRRSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9L2</accession>
    <name>B1Y9L2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">tRNA pseudouridine synthase Pus10</fullName>
            <ecNumber evidence="5">5.4.99.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">tRNA pseudouridine 54/55 synthase</fullName>
            <shortName evidence="5">Psi54/55 synthase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">pus10</name>
        <name evidence="8" type="ordered locus">Tneu_1517</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>uridine(54) in tRNA = pseudouridine(54) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:57876"/>
            <dbReference type="Rhea" id="RHEA-COMP:10193"/>
            <dbReference type="Rhea" id="RHEA-COMP:14141"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>uridine(55) in tRNA = pseudouridine(55) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:42532"/>
            <dbReference type="Rhea" id="RHEA-COMP:10101"/>
            <dbReference type="Rhea" id="RHEA-COMP:10102"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="EC" id="5.4.99.25"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the pseudouridine synthase Pus10 family.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.25" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9L2"/>
    <dbReference type="STRING" id="444157.Tneu_1517"/>
    <dbReference type="KEGG" id="tne:Tneu_1517"/>
    <dbReference type="eggNOG" id="arCOG01015">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028780_2_0_2"/>
    <dbReference type="OrthoDB" id="10348at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0160148">
        <property type="term" value="F:tRNA pseudouridine(55) synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031119">
        <property type="term" value="P:tRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.3190:FF:000001">
        <property type="entry name" value="tRNA pseudouridine synthase Pus10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01893">
        <property type="entry name" value="Pus10_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005912">
        <property type="entry name" value="Pus10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039894">
        <property type="entry name" value="Pus10-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048741">
        <property type="entry name" value="Pus10-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055174">
        <property type="entry name" value="Pus10_THUMP_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004114">
        <property type="entry name" value="THUMP_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01213">
        <property type="entry name" value="pseudo_Pus10arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21568">
        <property type="entry name" value="TRNA PSEUDOURIDINE SYNTHASE PUS10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21568:SF0">
        <property type="entry name" value="TRNA PSEUDOURIDINE SYNTHASE PUS10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21238">
        <property type="entry name" value="Pus10_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22023">
        <property type="entry name" value="Pus10_THUMP_arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="Pseudouridine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51165">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 5" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="THUMP" evidence="7">
        <location>
            <begin position="67"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="244"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="305"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="376"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009652"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="411" mass="46558" checksum="9CAF07526891822C" modified="2008-05-20" version="1">MDVLERSMEILRAYPLCDSCLGRLFAQLGYALENAERGSAIKTLLHMKLVTEYRQGADVSGDLKSLARVHRPTRRFLASVGVAVEDSQCYICGGLTSSVERYAKDAVVQLSGVDFETFAVGTTLPREVLERESEVVKRFLISTGESIKHEINRRIGREILKLLPGKKVDKQRPNVLVRIDLVTGKVDVVRNPLLIEGVYLKLSRRVSQAKKFGDVKASLLEKLAHVRDLYGGVEHLIHVSGREDSDARMLGPGRPLVIEVKNPSRYRGLPGRYEDGDVIYIPRGFTVREEIRRLKDKAKTDIKLYRALVYSENPLTETDLAKLGELTGKTILQYTPRRIKRLSPRKRRTRMVYELAWRLVSPHVFELYIRCQGGLYVKEFIHGDGGRTTPSVAEILNTYLEVLELDVLSIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Q0</accession>
    <name>B1Y9Q0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">H+transporting two-sector ATPase C subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_0014</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the V-ATPase proteolipid subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349394.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Q0"/>
    <dbReference type="STRING" id="444157.Tneu_0014"/>
    <dbReference type="GeneID" id="6164962"/>
    <dbReference type="KEGG" id="tne:Tneu_0014"/>
    <dbReference type="eggNOG" id="arCOG02455">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_148047_3_2_2"/>
    <dbReference type="OrthoDB" id="385590at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033179">
        <property type="term" value="C:proton-transporting V-type ATPase, V0 domain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.610">
        <property type="entry name" value="lithium bound rotor ring of v- atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002379">
        <property type="entry name" value="ATPase_proteolipid_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000245">
        <property type="entry name" value="ATPase_proteolipid_csu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035921">
        <property type="entry name" value="F/V-ATP_Csub_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00137">
        <property type="entry name" value="ATP-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00122">
        <property type="entry name" value="VACATPASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81333">
        <property type="entry name" value="F1F0 ATP synthase subunit C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="28"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="65"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="V-ATPase proteolipid subunit C-like" evidence="9">
        <location>
            <begin position="29"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB38972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="91" mass="9176" checksum="FC93F02B466DEA83" modified="2008-05-20" version="1">MNAKALSAIVLMAMLAMAQTTHTGGEKYLGAGIAAGLAGLGAGIALGLAGAAAMSALVERPQERIWYLIYLALAEAVAIYGLLIGLLVFTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9R6</accession>
    <name>B1Y9R6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Acetolactate synthase small subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1542</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350885.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9R6"/>
    <dbReference type="STRING" id="444157.Tneu_1542"/>
    <dbReference type="GeneID" id="6165315"/>
    <dbReference type="KEGG" id="tne:Tneu_1542"/>
    <dbReference type="eggNOG" id="arCOG05680">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2646065_0_0_2"/>
    <dbReference type="OrthoDB" id="27744at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13710">
        <property type="entry name" value="ACT_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="ACT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="77" mass="8933" checksum="AA879FD6237FBAC8" modified="2008-05-20" version="1">MRGINIVTPRSLDSLGRVIAITRRAKVQVMNMQVVQEDSVYRIHMEVEGPQDEVQWLVAKLDKLPEVLKIEEIHINR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="100" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9R7</accession>
    <name>B1Y9R7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Acetolactate synthase</fullName>
            <ecNumber evidence="12">2.2.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ordered locus">Tneu_1543</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>2 pyruvate + H(+) = (2S)-2-acetolactate + CO2</text>
            <dbReference type="Rhea" id="RHEA:25249"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="2.2.1.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>a 2-oxocarboxylate + 2 oxidized [2Fe-2S]-[ferredoxin] + CoA = an acyl-CoA + 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:42316"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="1.2.7.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="12">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
        <text evidence="12">Binds 1 thiamine pyrophosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 12">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 12">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Heterodimer composed of an alpha and a beta subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 12">Belongs to the TPP enzyme family.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.6" evidence="12"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9R7"/>
    <dbReference type="STRING" id="444157.Tneu_1543"/>
    <dbReference type="KEGG" id="tne:Tneu_1543"/>
    <dbReference type="eggNOG" id="arCOG01998">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013748_1_2_2"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00055"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005948">
        <property type="term" value="C:acetolactate synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018491">
        <property type="term" value="F:2-oxobutyrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003984">
        <property type="term" value="F:acetolactate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:L-valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd02015">
        <property type="entry name" value="TPP_AHAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd07035">
        <property type="entry name" value="TPP_PYR_POX_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.970:FF:000007">
        <property type="entry name" value="Acetolactate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.970">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1220">
        <property type="entry name" value="TPP-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012846">
        <property type="entry name" value="Acetolactate_synth_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039368">
        <property type="entry name" value="AHAS_TPP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000399">
        <property type="entry name" value="TPP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme_TPP-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00118">
        <property type="entry name" value="acolac_lg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968:SF13">
        <property type="entry name" value="ACETOLACTATE SYNTHASE CATALYTIC SUBUNIT, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="THIAMINE PYROPHOSPHATE ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="DHS-like NAD/FAD-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00187">
        <property type="entry name" value="TPP_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 12" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 12" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="8 12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 12" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="6 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiamine pyrophosphate enzyme N-terminal TPP-binding" evidence="15">
        <location>
            <begin position="2"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="Thiamine pyrophosphate enzyme central" evidence="13">
        <location>
            <begin position="164"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="Thiamine pyrophosphate enzyme TPP-binding" evidence="14">
        <location>
            <begin position="363"/>
            <end position="510"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00048893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ACB40467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="548" mass="59901" checksum="DBD9560FC1D0EF2B" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9S7</accession>
    <name>B1Y9S7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Oligopeptide/dipeptide ABC transporter, ATPase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1553</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350896.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9S7"/>
    <dbReference type="STRING" id="444157.Tneu_1553"/>
    <dbReference type="GeneID" id="6165460"/>
    <dbReference type="KEGG" id="tne:Tneu_1553"/>
    <dbReference type="eggNOG" id="arCOG00181">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_23_2"/>
    <dbReference type="OrthoDB" id="18209at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03257">
        <property type="entry name" value="ABC_NikE_OppD_transporters"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000016">
        <property type="entry name" value="Oligopeptide ABC transporter ATP-binding component"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050388">
        <property type="entry name" value="ABC_Ni/Peptide_Import"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43297:SF14">
        <property type="entry name" value="ATPASE AAA-TYPE CORE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43297">
        <property type="entry name" value="OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-1278">Translocase</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="5"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="322" mass="35914" checksum="597A13B612921FB6" modified="2008-05-20" version="1">MTLLLELRNVVMYYGTSKGVVKAVDGISLRLNRGEALALVGESGSGKSSLAFTIIKLLPRNVAKLGGEIFFHDEELGVVDLMKMKDDEIRQKIRWKKISMVFQASMNALNPIMRVEDQMVEPLMLHLGMSRDEAVKVAQEALYSVGLSKDVMARYPFELSGGMKQRVVIAMAIMMRPKLVILDEPTSALDVITQANIMNLLKDLKRKLGLSYILITHDIALASEIADKVGVMYAGKLVEVAPADVFYSKPRHPYSQKLIAAVPSLREEKTIEHIPGDVPSLINPPSGCRFHPRCPYAIKGKCDAEEPPRKQIEEGEVYCWLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9T0</accession>
    <name>B1Y9T0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1556</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9T0"/>
    <dbReference type="STRING" id="444157.Tneu_1556"/>
    <dbReference type="KEGG" id="tne:Tneu_1556"/>
    <dbReference type="eggNOG" id="arCOG01754">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019796_1_3_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047545">
        <property type="term" value="F:(S)-2-hydroxyglutarate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004617">
        <property type="term" value="F:phosphoglycerate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006564">
        <property type="term" value="P:L-serine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd05303">
        <property type="entry name" value="PGDH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000041">
        <property type="entry name" value="D-3-phosphoglycerate dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029753">
        <property type="entry name" value="D-isomer_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42938">
        <property type="entry name" value="FORMATE DEHYDROGENASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42938:SF9">
        <property type="entry name" value="FORMATE DEHYDROGENASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52283">
        <property type="entry name" value="Formate/glycerate dehydrogenase catalytic domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00670">
        <property type="entry name" value="D_2_HYDROXYACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00671">
        <property type="entry name" value="D_2_HYDROXYACID_DH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0520">NAD</keyword>
    <keyword evidence="2 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="D-isomer specific 2-hydroxyacid dehydrogenase catalytic" evidence="5">
        <location>
            <begin position="8"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="domain" description="D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding" evidence="6">
        <location>
            <begin position="109"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="311" mass="34157" checksum="6BDEA2B7E4A82B9D" modified="2008-05-20" version="1">MGALMSALVADSVDPLIRERLERRGIRVDMRPGISREELLSIIKNYNILIFRGRLKIDREVIDAGTNLKILARYGVGLDNVDVEYAVKRGLVVVSAPNAPTQSVAELTIGLMLAVARRIPLLSGKVKGGEWPKGRYVGVELGGKTLGVVGFGRIGRAVAHIARGLGMRIVASDVIDVSSEVEKLGGRQLPLEELLKTSDVVTVHVPLTPNTYKLINADRIALLKDGAIFVNTSRGEVVDYEALYRHIDRLWGVGLDVLPEEPPKSPYLRELVAHEKVVVTPHVGSETYEAMRRLAEELALNIEEVISRIKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9T5</accession>
    <name>B1Y9T5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RNA 2',3'-cyclic phosphodiesterase</fullName>
            <shortName evidence="2">RNA 2',3'-CPDase</shortName>
            <ecNumber evidence="2">3.1.4.58</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1561</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'-phosphomonoester.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a 3'-end 2',3'-cyclophospho-ribonucleotide-RNA + H2O = a 3'-end 2'-phospho-ribonucleotide-RNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:11828"/>
            <dbReference type="Rhea" id="RHEA-COMP:10464"/>
            <dbReference type="Rhea" id="RHEA-COMP:17353"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:83064"/>
            <dbReference type="ChEBI" id="CHEBI:173113"/>
            <dbReference type="EC" id="3.1.4.58"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the 2H phosphoesterase superfamily. ThpR family.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.58" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350904.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9T5"/>
    <dbReference type="STRING" id="444157.Tneu_1561"/>
    <dbReference type="GeneID" id="6166254"/>
    <dbReference type="KEGG" id="tne:Tneu_1561"/>
    <dbReference type="eggNOG" id="arCOG01736">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081251_3_4_2"/>
    <dbReference type="OrthoDB" id="44091at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004113">
        <property type="term" value="F:2',3'-cyclic-nucleotide 3'-phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008664">
        <property type="term" value="F:RNA 2',3'-cyclic 3'-phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1140.10">
        <property type="entry name" value="Cyclic phosphodiesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01940">
        <property type="entry name" value="RNA_CPDase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009097">
        <property type="entry name" value="Cyclic_Pdiesterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004175">
        <property type="entry name" value="RNA_CPDase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02258">
        <property type="entry name" value="2_5_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35561">
        <property type="entry name" value="RNA 2',3'-CYCLIC PHOSPHODIESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35561:SF1">
        <property type="entry name" value="RNA 2',3'-CYCLIC PHOSPHODIESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13563">
        <property type="entry name" value="2_5_RNA_ligase2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55144">
        <property type="entry name" value="LigT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="HXTX 1" evidence="2">
        <location>
            <begin position="43"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="HXTX 2" evidence="2">
        <location>
            <begin position="128"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="186" mass="20982" checksum="BD0EC0DDAB0B5A8B" modified="2008-05-20" version="1">MSVRAFIAVDIDSPEVVRRVEQIQREVLGLGVDVKLVERENLHITLRFLGEVPQGRINDIARALAALKHQRFEIRLVGLGVFPHMASPRVLWVGVAQGAEELTRLANAVRAAVDKYAEHREERDFTPHLTIGRVKSGRNVDKLRELVERHKNTEFGAAVVDKVKLKRSVLTPRGPIYSDLFVQVLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9U8</accession>
    <name>B1Y9U8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Protein translation factor SUI1 homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1574</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the SUI1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9U8"/>
    <dbReference type="STRING" id="444157.Tneu_1574"/>
    <dbReference type="KEGG" id="tne:Tneu_1574"/>
    <dbReference type="eggNOG" id="arCOG04223">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082805_6_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001731">
        <property type="term" value="P:formation of translation preinitiation complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002188">
        <property type="term" value="P:translation reinitiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11567">
        <property type="entry name" value="YciH_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.780.10">
        <property type="entry name" value="SUI1-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001950">
        <property type="entry name" value="SUI1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005872">
        <property type="entry name" value="SUI1_arc_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036877">
        <property type="entry name" value="SUI1_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01253">
        <property type="entry name" value="SUI1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037511">
        <property type="entry name" value="Transl_init_SUI1_pro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55159">
        <property type="entry name" value="eIF1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50296">
        <property type="entry name" value="SUI1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="2 3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0810">Translation regulation</keyword>
    <feature type="domain" description="SUI1" evidence="4">
        <location>
            <begin position="45"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR037511"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="128" mass="14436" checksum="37D49C0862220F7B" modified="2008-05-20" version="1">MSISTVARMEIKLPGQDAEDIIDQLLGGGEDQSLMQTLTKEKALVRIRLENRRGHYVTIVDFGNSEDAKQLGIKDMARELKKRLAAGGTIRDSWIEIQGDHRQKVKKLLIEMGFKEENILIDEGVTET</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Z3</accession>
    <name>B1Y9Z3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Heat shock protein Hsp20</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1620</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Z3"/>
    <dbReference type="STRING" id="444157.Tneu_1620"/>
    <dbReference type="KEGG" id="tne:Tneu_1620"/>
    <dbReference type="eggNOG" id="arCOG01833">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117605_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009408">
        <property type="term" value="P:response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06464">
        <property type="entry name" value="ACD_sHsps-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007052">
        <property type="entry name" value="CS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044587">
        <property type="entry name" value="HSP21-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041800">
        <property type="entry name" value="Hsp20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46733">
        <property type="entry name" value="26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46733:SF4">
        <property type="entry name" value="HEAT SHOCK PROTEIN 21, CHLOROPLASTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="HSP20-like chaperones"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51203">
        <property type="entry name" value="CS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 6" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="SHSP" evidence="4">
        <location>
            <begin position="77"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="CS" evidence="5">
        <location>
            <begin position="82"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="175" mass="20659" checksum="AA1C7C4F679A989B" modified="2008-05-20" version="1">MLHMSIFDEFERFMRRWQKFFEEVERQIEEDFRRLSAGGPGRPRYYYYGFEITMGPDGRPVVREFGNVRRKPDVERIEVVDEIDPLTDVVEENDKIKVVVDMPGVEKEDIKLYVSEDGRTLTIDARGKERKYHKEIRLPAAVDPNKAKATYKNGVLSIELEKVEKKKRGFEIKVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA09</accession>
    <name>B1YA09_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1636</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350978.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA09"/>
    <dbReference type="STRING" id="444157.Tneu_1636"/>
    <dbReference type="GeneID" id="6165738"/>
    <dbReference type="KEGG" id="tne:Tneu_1636"/>
    <dbReference type="eggNOG" id="arCOG05676">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1154386_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="236" mass="26412" checksum="95C095755B056A62" modified="2008-05-20" version="1">MNLLQALGADVGYLGEYVFSKAFPNAARGEHVAMLVEGVYSSHRLKPRPAGPPAESGPGIYSRHVNVEWPIHKSWFVPVVDYGEPAVLVDPPKRLVKYVGRDVDGAYAYILSLGLAELTWYIQREDPPSLLRGLEAFTEAELEAARLLYKRLGGDPEFVAQVVETLREVDFLLVEDGEIYHVEVKTTARPTDAKLRKKRAMLQRRQAVVGKLGLKPALAVVVPRENWEVELWLEKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA23</accession>
    <name>B1YA23_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="10 11">Large ribosomal subunit protein eL37</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">rpl37e</name>
        <name evidence="13" type="ordered locus">Tneu_0039</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 11">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="function">
        <text evidence="12">Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="11">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11 12">Belongs to the eukaryotic ribosomal protein eL37 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_011899567.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA23"/>
    <dbReference type="STRING" id="444157.Tneu_0039"/>
    <dbReference type="GeneID" id="6164984"/>
    <dbReference type="KEGG" id="tne:Tneu_0039"/>
    <dbReference type="eggNOG" id="arCOG04126">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_208825_0_0_2"/>
    <dbReference type="OrthoDB" id="5619at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.25.30:FF:000003">
        <property type="entry name" value="50S ribosomal protein L37e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.25.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00547">
        <property type="entry name" value="Ribosomal_eL37"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001569">
        <property type="entry name" value="Ribosomal_eL37"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011331">
        <property type="entry name" value="Ribosomal_eL37/eL43"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018267">
        <property type="entry name" value="Ribosomal_eL37_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003214">
        <property type="entry name" value="PRK04179.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01907">
        <property type="entry name" value="Ribosomal_L37e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="Zn-binding ribosomal proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01077">
        <property type="entry name" value="RIBOSOMAL_L37E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 11 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 11 12" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="8 11 12" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="7 11 12" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 11 12" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="6 11 12" id="KW-0862">Zinc</keyword>
    <keyword evidence="5 11" id="KW-0863">Zinc-finger</keyword>
    <feature type="zinc finger region" description="C4-type" evidence="11">
        <location>
            <begin position="19"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00035225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB38997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="52" mass="6143" checksum="8F1C82BB8FF46EC7" modified="2008-05-20" version="1">MKGTPSMGKHNRGKTHIRCPRCGRHSYNVTKKYCASCGWGRTKRWRKYSWAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA25</accession>
    <name>B1YA25_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 8">Iron-sulfur cluster carrier protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0041</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the Mrp/NBP35 ATP-binding proteins family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349420.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA25"/>
    <dbReference type="STRING" id="444157.Tneu_0041"/>
    <dbReference type="GeneID" id="6164677"/>
    <dbReference type="KEGG" id="tne:Tneu_0041"/>
    <dbReference type="eggNOG" id="arCOG00585">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024839_0_2_2"/>
    <dbReference type="OrthoDB" id="8297at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140663">
        <property type="term" value="F:ATP-dependent FeS chaperone activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02037">
        <property type="entry name" value="Mrp_NBP35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:001119">
        <property type="entry name" value="Iron-sulfur cluster carrier protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02040">
        <property type="entry name" value="Mrp_NBP35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019591">
        <property type="entry name" value="Mrp/NBP35_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044304">
        <property type="entry name" value="NUBPL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033756">
        <property type="entry name" value="YlxH/NBP35"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42961">
        <property type="entry name" value="IRON-SULFUR PROTEIN NUBPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42961:SF2">
        <property type="entry name" value="IRON-SULFUR PROTEIN NUBPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10609">
        <property type="entry name" value="ParA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 8" id="KW-0408">Iron</keyword>
    <keyword evidence="5 8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="33"/>
            <end position="40"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00058094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00074706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB38999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="304" mass="32410" checksum="0E1882B37AF296C3" modified="2008-05-20" version="1">MSVKVSIRGQSAAPGSLADALKGVKLKLVTISGKGGVGKSLVTASIAVGFAMRGYKVGVLDGDVYGPTVPKMLGVSNSTLFVDERTGKIVPVTGPLGIKVVSIEFALPSDDTAVIWRAPLVNQALRDFIAQVDWGSLDLLVVDLPPGTGDAPLTIAQSLQGGLDGSIVVTIPTEISRRIVLKSVDFSRKLNIRVAGVVENMCCFKCPDNGKIYYIFGRDAGRRVAEAAGVPFLGGIPIDPELSHYLDSGRLHEFLAKENDTARAVLAIVDQLAEMYKDKLSQQVKAEEKPKRLSLLKLPGEEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA28</accession>
    <name>B1YA28_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0044</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349423.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA28"/>
    <dbReference type="STRING" id="444157.Tneu_0044"/>
    <dbReference type="GeneID" id="6164823"/>
    <dbReference type="KEGG" id="tne:Tneu_0044"/>
    <dbReference type="eggNOG" id="arCOG01259">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_2_2"/>
    <dbReference type="OrthoDB" id="24596at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd05344">
        <property type="entry name" value="BKR_like_SDR_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.720:FF:000084">
        <property type="entry name" value="Short-chain dehydrogenase reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050259">
        <property type="entry name" value="SDR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42879">
        <property type="entry name" value="3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42879:SF6">
        <property type="entry name" value="NADPH-DEPENDENT REDUCTASE BACG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13561">
        <property type="entry name" value="adh_short_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="259" mass="28422" checksum="9DF265DC6C98BCF0" modified="2008-05-20" version="1">MLKGKVSIVTAASRGIGRGVASVLAREGSDLVIAARDWGRLKEVAEELSSQHGVSVVPVAADLTKREDVKRIVETAVKQFGKVDVLVYNTGPPKPGTFLELTEEDWDYGVRLLLMSAVWITRDVLPHMVERRQGRLIYITSSTLKQPIPTLTLSNVVRISLAGLVKTLAYQLGRYNILVNGIMQGYVDTDRVREVAAARAQREGRTVEDILEEMGREIPLGRLAKPEEIGELVAFLASERASYITGSLILIDGGRTLCI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA54</accession>
    <name>B1YA54_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">PfkB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0070</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the carbohydrate kinase PfkB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349449.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA54"/>
    <dbReference type="STRING" id="444157.Tneu_0070"/>
    <dbReference type="GeneID" id="6165012"/>
    <dbReference type="KEGG" id="tne:Tneu_0070"/>
    <dbReference type="eggNOG" id="arCOG00014">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027634_6_0_2"/>
    <dbReference type="OrthoDB" id="26949at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006796">
        <property type="term" value="P:phosphate-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd01942">
        <property type="entry name" value="ribokinase_group_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002139">
        <property type="entry name" value="Ribo/fructo_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10584:SF166">
        <property type="entry name" value="RIBOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10584">
        <property type="entry name" value="SUGAR KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00990">
        <property type="entry name" value="RIBOKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="Ribokinase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00584">
        <property type="entry name" value="PFKB_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Carbohydrate kinase PfkB" evidence="5">
        <location>
            <begin position="2"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="305" mass="32177" checksum="F01C74AFA2632BC1" modified="2008-05-20" version="1">MEIASVGNLNFDVYLRVSELPGPDENAEVLDLYTGGGGSAANFAVAAARLGLAPRFIGAVGEDPLGEISLRELREEGVDVTYVKRIAGVRSGLVVVLVHPDGVKRMLSYRGANLGLAPGDLTPEKFRGVRHIHLATGRTELILKAKEVAREVGASLSVDGGTALAKKGLDIVRPAVEGVDVLFMNQAEARLLAGSHDHRTAVEKLARELRVGELVVTLGARGAAAYGGGKLLHVDAFRVDAVDTTGAGDCFAAAYIAMHLRGRDPYEKLLFANAAAAIKVTRPGARSSPRYAEVEAFLASLGYKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA61</accession>
    <name>B1YA61_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0077</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349456.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA61"/>
    <dbReference type="STRING" id="444157.Tneu_0077"/>
    <dbReference type="GeneID" id="6164497"/>
    <dbReference type="KEGG" id="tne:Tneu_0077"/>
    <dbReference type="eggNOG" id="arCOG05466">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_932621_0_0_2"/>
    <dbReference type="OrthoDB" id="15347at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="244"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="281"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="299" mass="31989" checksum="2B08D7977F717CE6" modified="2008-05-20" version="1">MVEYIVDGDYGEDEKLAIALGLSITFRRALAVARPSPEAVKAAVGGVWGALLITPCPPELPCFKDLQEAADYSEAYSTPVGYEGPLPATERRRVSTFNKHYLRPWRWARAGEEPAVGHRLLPLMACLYQKLKALDATPVVISDVRLQPRSAGSPDYMVIPTWHSPSEVAEVVDVYLPPLKAAAIALGVLAGGYSAGPVVAIAKARDRLVEELAKLGGYAVVLDEGGDPCQLFERRVVGYSPDQRRYVVDPSLCDRCGDCLKTGCPAVAPTPGGVPQLLQTCTGCGACALVCTRGAIRPE</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA63</accession>
    <name>RL14E_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein eL14</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L14e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl14e</name>
        <name type="ordered locus">Tneu_0079</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL14 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349458.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA63"/>
    <dbReference type="SMR" id="B1YA63"/>
    <dbReference type="STRING" id="444157.Tneu_0079"/>
    <dbReference type="GeneID" id="6164987"/>
    <dbReference type="KEGG" id="tne:Tneu_0079"/>
    <dbReference type="eggNOG" id="arCOG04167">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_183474_0_0_2"/>
    <dbReference type="OrthoDB" id="63594at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042273">
        <property type="term" value="P:ribosomal large subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06088">
        <property type="entry name" value="KOW_RPL14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.30:FF:000045">
        <property type="entry name" value="50S ribosomal protein L14e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00721">
        <property type="entry name" value="Ribosomal_eL14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_uL2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039660">
        <property type="entry name" value="Ribosomal_eL14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023651">
        <property type="entry name" value="Ribosomal_eL14_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041985">
        <property type="entry name" value="Ribosomal_eL14_KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003320">
        <property type="entry name" value="PRK04333.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11127">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11127:SF2">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN EL14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="Translation proteins SH3-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000132638" description="Large ribosomal subunit protein eL14">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="103" mass="11439" checksum="1E1925E054486DA6" modified="2008-05-20" version="1">MVKVIDVGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKQLTGVRRRRVNVNHIEPTDKKVEVKRGASDEEVLKAVEAAGLADYMRERVKPQMFGITASEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA70</accession>
    <name>B1YA70_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Abortive infection protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0086</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349465.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA70"/>
    <dbReference type="STRING" id="444157.Tneu_0086"/>
    <dbReference type="GeneID" id="6164935"/>
    <dbReference type="KEGG" id="tne:Tneu_0086"/>
    <dbReference type="eggNOG" id="arCOG03735">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1412413_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004175">
        <property type="term" value="F:endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0080120">
        <property type="term" value="P:CAAX-box protein maturation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052710">
        <property type="entry name" value="CAAX_protease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003675">
        <property type="entry name" value="Rce1/LyrA-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36435:SF1">
        <property type="entry name" value="CAAX AMINO TERMINAL PROTEASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36435">
        <property type="entry name" value="SLR1288 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02517">
        <property type="entry name" value="Rce1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="173"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="domain" description="CAAX prenyl protease 2/Lysostaphin resistance protein A-like" evidence="2">
        <location>
            <begin position="98"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="193" mass="20899" checksum="3C89817534037F99" modified="2008-05-20" version="1">MRLVVLALSLPAMFIAMGAAALLAPGCGLAIPMAAAYLALTPVVYYSRRYLTLRPRYFLVSLGMFAALWGLEALLSPILREYEAFTRELLEAIAGCPSWLLYFFITAVVLAPVVEETLFRVILYTELERRAGALVGYVGNSLAFALVHGLPALTPLYFASGLILTYSFKKGGALSSIVLHGLNNLLALLSILP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA74</accession>
    <name>B1YA74_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">thioredoxin-dependent peroxiredoxin</fullName>
            <ecNumber evidence="1">1.11.1.24</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Thioredoxin peroxidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_0090</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>a hydroperoxide + [thioredoxin]-dithiol = an alcohol + [thioredoxin]-disulfide + H2O</text>
            <dbReference type="Rhea" id="RHEA:62620"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:30879"/>
            <dbReference type="ChEBI" id="CHEBI:35924"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.11.1.24"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the peroxiredoxin family. BCP/PrxQ subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.24" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349469.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA74"/>
    <dbReference type="STRING" id="444157.Tneu_0090"/>
    <dbReference type="GeneID" id="6165048"/>
    <dbReference type="KEGG" id="tne:Tneu_0090"/>
    <dbReference type="eggNOG" id="arCOG00310">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042529_14_1_2"/>
    <dbReference type="OrthoDB" id="145578at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008379">
        <property type="term" value="F:thioredoxin peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034599">
        <property type="term" value="P:cellular response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03017">
        <property type="entry name" value="PRX_BCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.30.10">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050924">
        <property type="entry name" value="Peroxiredoxin_BCP/PrxQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42801:SF4">
        <property type="entry name" value="AHPC_TSA FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42801">
        <property type="entry name" value="THIOREDOXIN-DEPENDENT PEROXIDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="Thioredoxin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0049">Antioxidant</keyword>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="6" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="10">
        <location>
            <begin position="1"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00032824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00038489"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00049091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="136" mass="15395" checksum="ED86C5587F233737" modified="2008-05-20" version="1">MEFPDLELTAHTGERVSPARAPKAVVYFFPKAFTQGCTRETVRFNELYPRFRERGYEVYGVSTDGVETLRRFAERYKVQFKLLSDEGGRLASQLGILRPTGTAERVTYIVVGGRVVHVLRGLKSADEHADRALELT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA83</accession>
    <name>B1YA83_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidase M28 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0099</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349478.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA83"/>
    <dbReference type="GeneID" id="6164334"/>
    <dbReference type="KEGG" id="tne:Tneu_0099"/>
    <dbReference type="eggNOG" id="arCOG02960">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_625029_0_0_2"/>
    <dbReference type="OrthoDB" id="34215at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.10">
        <property type="entry name" value="Zn peptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007484">
        <property type="entry name" value="Peptidase_M28"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04389">
        <property type="entry name" value="Peptidase_M28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53187">
        <property type="entry name" value="Zn-dependent exopeptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase M28" evidence="1">
        <location>
            <begin position="184"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="435" mass="48059" checksum="7BC37573ACDD4975" modified="2008-05-20" version="1">MAEVYAKCTSYRDLVAGSPAEREFLQWLMAFLDSPSLWFHLSPVEVLHWEDLGTRLVVGGEEEVGLAMPYSRPTSVEGRLAPLDGDVEGNIAVADLPADLDDAKYIVLEAARRGASAVVFTGERPRRIVVTGEPGFKSDAAPPPIPAASFGDLKRHLGRRARLEVATRSRVTYSYSLIAFNSFENTPMISAHWDHWLVGATDNCAGVEAAVLAFVELAAGEFPIALGLFTAEEGVAPHVPSFYWAWGSFNYLRRWRPTLLVNVDVVGVGTPRIYAMPYLHEELKSLGPVEWPVAYFDSVHYERWGLPALTISSLRDAWDRYHSPADSHVDVENVLYVAELAKRAVKVKPRAPQVGLEEYGLANPEADPYAAWSAVYNYLVLFRDLRHSEIVYANVPRFLRGEAGSYSRIDLLGGPTLCVGDCAGAFETYRALLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAA2</accession>
    <name>B1YAA2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0118</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349497.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAA2"/>
    <dbReference type="STRING" id="444157.Tneu_0118"/>
    <dbReference type="GeneID" id="6164619"/>
    <dbReference type="KEGG" id="tne:Tneu_0118"/>
    <dbReference type="eggNOG" id="arCOG05624">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2217147_0_0_2"/>
    <dbReference type="OrthoDB" id="24687at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="99" mass="11019" checksum="3994C19580F79E26" modified="2008-05-20" version="1">MAYINPADKARFGEDATPEALKNAERAGLRSGPNELRMGNFYARYAGGHVETSYGRYSADPQQWEILKALIISHAATYRRPPTQEELRDMLFAAGVTSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAA4</accession>
    <name>B1YAA4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AAA ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0120</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349499.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAA4"/>
    <dbReference type="STRING" id="444157.Tneu_0120"/>
    <dbReference type="GeneID" id="6164286"/>
    <dbReference type="KEGG" id="tne:Tneu_0120"/>
    <dbReference type="eggNOG" id="arCOG03409">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070505_0_0_2"/>
    <dbReference type="OrthoDB" id="25948at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011579">
        <property type="entry name" value="ATPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01637">
        <property type="entry name" value="ATPase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="1">
        <location>
            <begin position="22"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="329" mass="37570" checksum="6AAB4A92DF8C79E9" modified="2008-05-20" version="1">MDIFVGRVRELGWFREVMGVQHTYPFLLYGPLGCGKTTLAQKVAEKAEELFGGVVVLYINARAKRAENALFTNAVQWLKEALSKFAKAAAGEVGELLARTAVDIALYFVEKTSKDILLIVDEFHRAYRDDPVGWVKYYMDLMEHPSLRDEELRNITLNVVLITSEYTAVREIAPKRYADPYMVWNLAREEFRELYNALNPPIDFETLWRTCGGNPRCAGDLKRVGWDVERYVDRLAGDVYPLVYEAARYKVRDLLAEVVKDPDFLHHAVDRADGGKLLRLEKLLYRHNALLKTRETIAGGKPPRDPALGVGERYAWHWPALKDAVARAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAC0</accession>
    <name>B1YAC0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1647</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350988.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAC0"/>
    <dbReference type="STRING" id="444157.Tneu_1647"/>
    <dbReference type="GeneID" id="6165515"/>
    <dbReference type="KEGG" id="tne:Tneu_1647"/>
    <dbReference type="eggNOG" id="arCOG00261">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040769_1_2_2"/>
    <dbReference type="OrthoDB" id="372203at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06580">
        <property type="entry name" value="TM_PBP1_transp_TpRbsC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43370:SF1">
        <property type="entry name" value="GUANOSINE ABC TRANSPORTER PERMEASE PROTEIN NUPQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43370">
        <property type="entry name" value="SUGAR ABC TRANSPORTER INTEGRAL MEMBRANE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="69"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="101"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="188"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="223"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="269"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="299" mass="31404" checksum="C88022CD41CBF840" modified="2008-05-20" version="1">MTELLYLLALQALLASVPILLATLGEILTERSGVVNIGVEGVMLLGALAGPLLVDYMRLRAGLQLPEPLWPLVAMLVAAAVGALVGLIHGYISAYLAGDQIISGVAINLFAAGAVAYGIQAYWGVAGYKQIPDWAKADPVPVAAFSIALAGLMWYLLYKTRAGAVIRACGESPEAAFNVGIDVYKVRLISTAAGSSLAALAGAYLSVAYLSVVTKEISAGRGFIALANVVFSNWNPALAVAGAFVFGFFDALSYWLQTLGVARYEITRMIPYVATLLIVAGVIGRAKPPRAVGKAFRRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAC2</accession>
    <name>B1YAC2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">RecB-family nuclease-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1649</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350990.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAC2"/>
    <dbReference type="STRING" id="444157.Tneu_1649"/>
    <dbReference type="GeneID" id="6165506"/>
    <dbReference type="KEGG" id="tne:Tneu_1649"/>
    <dbReference type="eggNOG" id="arCOG01019">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140136_0_0_2"/>
    <dbReference type="OrthoDB" id="18579at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018665">
        <property type="entry name" value="DUF2122_RecB-nuclease-rel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09895">
        <property type="entry name" value="DUF2122"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="142" mass="15406" checksum="0D5C21A0524A065E" modified="2008-05-20" version="1">MEVAVAVYNVSSVPKMLELAKVTYGFGVKRFALIKVFGAAAQQIGDLFKLAFKMGGEVLVFNDIGDALEVLRPEVVYAIGRPDKDTRPVERVDKRVMLLIHGADLPFSPRELPPYAVLSHAVPKDVGSVGQLAVALYKLLGP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAF9</accession>
    <name>RS27_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Small ribosomal subunit protein eS27</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">30S ribosomal protein S27e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rps27e</name>
        <name type="ordered locus">Tneu_1686</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eS27 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351027.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAF9"/>
    <dbReference type="SMR" id="B1YAF9"/>
    <dbReference type="STRING" id="444157.Tneu_1686"/>
    <dbReference type="GeneID" id="6165137"/>
    <dbReference type="KEGG" id="tne:Tneu_1686"/>
    <dbReference type="eggNOG" id="arCOG04108">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_199465_0_0_2"/>
    <dbReference type="OrthoDB" id="5718at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="2.20.25.100:FF:000002">
        <property type="entry name" value="30S ribosomal protein S27e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.25.100">
        <property type="entry name" value="Zn-binding ribosomal proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00371">
        <property type="entry name" value="Ribosomal_eS27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000592">
        <property type="entry name" value="Ribosomal_eS27"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023407">
        <property type="entry name" value="Ribosomal_eS27_Zn-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001629">
        <property type="entry name" value="PRK00415.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11594">
        <property type="entry name" value="40S RIBOSOMAL PROTEIN S27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01667">
        <property type="entry name" value="Ribosomal_S27e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="Zn-binding ribosomal proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01168">
        <property type="entry name" value="RIBOSOMAL_S27E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <keyword id="KW-0863">Zinc-finger</keyword>
    <feature type="chain" id="PRO_1000121521" description="Small ribosomal subunit protein eS27">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="1">
        <location>
            <begin position="22"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="25"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="67" mass="7317" checksum="E0E0D7110DD7DED6" modified="2008-05-20" version="1">MPARFGKTLIPQPRSRFIKVRCPDCGNEQVTFSHAAMVVRCLVCGRVLAQPTGGKARLAGHVIKVLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAU1</accession>
    <name>B1YAU1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Molybdopterin-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0215</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349591.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAU1"/>
    <dbReference type="STRING" id="444157.Tneu_0215"/>
    <dbReference type="GeneID" id="6164485"/>
    <dbReference type="KEGG" id="tne:Tneu_0215"/>
    <dbReference type="eggNOG" id="arCOG05486">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1631711_0_0_2"/>
    <dbReference type="OrthoDB" id="27585at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="ADC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="157" mass="17171" checksum="360833A4F37CEEF9" modified="2008-05-20" version="1">MYAVARLYGYSEEAGFKAWVGRDLATALGLRVGDGIRVETKSGASSARIAEVRDDVKAGVVLSIDVYMAVAGFRTVLLKKLSRAFEAHAVSLGVAQPIDVEQLAELVNVLIAYRVPVFTNFMGYVQGAGGRWIRISIKEVSPREPAYLSRETKIHVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAU8</accession>
    <name>B1YAU8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0222</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349598.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAU8"/>
    <dbReference type="STRING" id="444157.Tneu_0222"/>
    <dbReference type="GeneID" id="6165941"/>
    <dbReference type="KEGG" id="tne:Tneu_0222"/>
    <dbReference type="eggNOG" id="arCOG00656">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040406_0_0_2"/>
    <dbReference type="OrthoDB" id="8186at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044689">
        <property type="term" value="F:7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01335">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045567">
        <property type="entry name" value="CofH/MnqC-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaA/NifB-like_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034405">
        <property type="entry name" value="F420"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020050">
        <property type="entry name" value="FO_synthase_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058240">
        <property type="entry name" value="rSAM_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00423">
        <property type="entry name" value="CofH family radical SAM protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43076">
        <property type="entry name" value="FO SYNTHASE (COFH)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43076:SF14">
        <property type="entry name" value="RADICAL SAM DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19288">
        <property type="entry name" value="CofH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004762">
        <property type="entry name" value="CHP00423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00343">
        <property type="entry name" value="aminofutalosine_synthase_(mqnE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01064">
        <property type="entry name" value="F420__menaquinone_cofactor_bio"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01389">
        <property type="entry name" value="menaquinone_synthsis_involved"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102114">
        <property type="entry name" value="Radical SAM enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="8">
        <location>
            <begin position="39"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR004762-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR004762-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="353" mass="38836" checksum="3F5C1ABA96BF0EB2" modified="2008-05-20" version="1">MTARGLSRNDAVYLMREVDLFTLAEAAHAVTQKFYGDVVTFVNNVVINYTNICVAKCPICAFYRSPGHPEAYTRKAEEVAALVERFAVEYGVTELHINGGFNPLLPPEYFDELFKAVKRRVPHVVVKGPTMAEAAYYAGLWKMSVREVLSRWKEAGLDAISGGGAEIFADEVRKVVAPHKISGEEWLRVAEVAHELGIPSNATVLYGHVEAVEHLVDHIFRVRELQEKTGGLLLFIPVKFNPLNTELHRRGVVKAPAPSTYDVKVVALARLILLDRLKVAAYWLSVGKKLASTLLLAGANDLVGTMYNEAVLTSAGAKHSATVEELAAIAREAGKTPALRDTFHRRIKPLDGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAV1</accession>
    <name>B1YAV1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0225</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349601.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAV1"/>
    <dbReference type="STRING" id="444157.Tneu_0225"/>
    <dbReference type="GeneID" id="6164384"/>
    <dbReference type="KEGG" id="tne:Tneu_0225"/>
    <dbReference type="eggNOG" id="arCOG00194">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="87732at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03230">
        <property type="entry name" value="ABC_DR_subfamily_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43613">
        <property type="entry name" value="ABC TRANSPORTER, ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43613:SF1">
        <property type="entry name" value="ABC TRANSPORTER, ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="3">
        <location>
            <begin position="2"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="245" mass="26619" checksum="7DEB9A3FFECB5B1F" modified="2008-05-20" version="1">MIRAVGVRKRFGRLDVLRGVDLEARAGEVVGLVGPNGAGKTTTLRILAGLLKPDGGYAEVLGVRTDSPEFQKRRRYLAYLPEEVLPYDNLTGRQFIEFIHGLYGVDNVREAVEISALGPRVDDKVKTYSKGMRRRLVVAALLTVEALALLLDEPTAGVDVVHAVEMRRLVKDYAKSRGAAVVYSSHNMLEVESVCDRVYFIDKGVVIARGTPKQLMELYGASDLEEAFVRALGSAGGGGPTPPPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAZ2</accession>
    <name>B1YAZ2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1774</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351111.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAZ2"/>
    <dbReference type="STRING" id="444157.Tneu_1774"/>
    <dbReference type="GeneID" id="6165242"/>
    <dbReference type="KEGG" id="tne:Tneu_1774"/>
    <dbReference type="eggNOG" id="arCOG02487">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_348732_0_0_2"/>
    <dbReference type="OrthoDB" id="28558at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017868">
        <property type="entry name" value="Filamin/ABP280_repeat-like"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50194">
        <property type="entry name" value="FILAMIN_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="772"/>
            <end position="797"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="805" mass="86727" checksum="CC9C204B0EEF24B6" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB24</accession>
    <name>B1YB24_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1806</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351143.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB24"/>
    <dbReference type="STRING" id="444157.Tneu_1806"/>
    <dbReference type="GeneID" id="6164429"/>
    <dbReference type="KEGG" id="tne:Tneu_1806"/>
    <dbReference type="eggNOG" id="arCOG00925">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="24644at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03219">
        <property type="entry name" value="ABC_Mj1267_LivG_branched"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051120">
        <property type="entry name" value="ABC_AA/LPS_Transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45772:SF5">
        <property type="entry name" value="BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVG-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45772">
        <property type="entry name" value="CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="7"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="246" mass="26820" checksum="43083F1C94DC941A" modified="2008-05-20" version="1">MPSGLLLQASGVVKKFGGLTALDGASISVPQNSFVILAGPNGSGKTTLLNVISGLYRPDGGKVLYQGLDITHARPYERARLGIVRTFQTPRVATKMSVLDNVIFGHISADAPFEFGWARREGELVEKAFKVLKVVKLDHMWDRAAGELSGGQLKLLEIARALMADAKLILMDEPGAGLNPTLAHELFKLMRELTQRGHTLLVVEHRLDIAAEYADYMYVLYNGRVLAEGRPGEVLSDPRVVQAFLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB35</accession>
    <name>B1YB35_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 9">Peptide chain release factor subunit 1</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">Translation termination factor aRF1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">prf1</name>
        <name evidence="11" type="ordered locus">Tneu_1818</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 9">Heterodimer of two subunits, one of which binds GTP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the eukaryotic release factor 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351154.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB35"/>
    <dbReference type="STRING" id="444157.Tneu_1818"/>
    <dbReference type="GeneID" id="6164649"/>
    <dbReference type="KEGG" id="tne:Tneu_1818"/>
    <dbReference type="eggNOG" id="arCOG01742">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035759_3_0_2"/>
    <dbReference type="OrthoDB" id="1011at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016149">
        <property type="term" value="F:translation release factor activity, codon specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.420.60:FF:000003">
        <property type="entry name" value="Peptide chain release factor subunit 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.960.10:FF:000003">
        <property type="entry name" value="Peptide chain release factor subunit 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.960.10">
        <property type="entry name" value="eRF1 domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.60">
        <property type="entry name" value="eRF1 domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00424">
        <property type="entry name" value="Rel_fact_arch_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042226">
        <property type="entry name" value="eFR1_2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024049">
        <property type="entry name" value="eRF1_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005141">
        <property type="entry name" value="eRF1_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005142">
        <property type="entry name" value="eRF1_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005140">
        <property type="entry name" value="eRF1_Pelota-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020918">
        <property type="entry name" value="Peptide_chain-rel_aRF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004403">
        <property type="entry name" value="Peptide_chain-rel_eRF1/aRF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="Ribosomal_eL30-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03676">
        <property type="entry name" value="aRF1_eRF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10113">
        <property type="entry name" value="PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03463">
        <property type="entry name" value="eRF1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03464">
        <property type="entry name" value="eRF1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03465">
        <property type="entry name" value="eRF1_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01194">
        <property type="entry name" value="eRF1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="L30e-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55481">
        <property type="entry name" value="N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53137">
        <property type="entry name" value="Translational machinery components"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="eRF1/Pelota-like N-terminal" evidence="10">
        <location>
            <begin position="10"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00019723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00031168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00424"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM01194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="385" mass="43269" checksum="4B20D6E53FDBE4B4" modified="2008-05-20" version="1">MSFNRPPNGVYYIKTPVEMRAFINLLKKFRGYATTLITLYINSERPIPDVLNLLRSEWSTASNIKDKTTRTHVQDTLERIINNLKGEAKAPENGMAVFAGFHMINQGNYEWVYYVVVPPQPIYTFKYICDTAFHTEILEDQMHAGVVYGIVVVERGEAVIALLKGGQWEVVKTVEFFVPSKHHAGGQSANRFKRQTEHLAETFYKVLAEEVNKIFLQIPTLKGIIVGGPGPTKEDFLEEGGLDYRLKDKVLAVVPACCANEYGVVEAIKNAQEQLKESEYVHAKEVMEKVMYYAVRKSDYMVYGKERALKALEMGMAETIVVAEELGEDAVLEVVMKAEEKGVKVEVVPKGVEESKTLMQAFGGYVALLSTPVWVLEQQIQAEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB77</accession>
    <name>B1YB77_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6">acylphosphatase</fullName>
            <ecNumber evidence="2 6">3.6.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0255</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>an acyl phosphate + H2O = a carboxylate + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14965"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29067"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:59918"/>
            <dbReference type="EC" id="3.6.1.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the acylphosphatase family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.7" evidence="2 6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349629.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB77"/>
    <dbReference type="STRING" id="444157.Tneu_0255"/>
    <dbReference type="GeneID" id="6166259"/>
    <dbReference type="KEGG" id="tne:Tneu_0255"/>
    <dbReference type="eggNOG" id="arCOG01674">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_141932_3_2_2"/>
    <dbReference type="OrthoDB" id="6643at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003998">
        <property type="term" value="F:acylphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.100:FF:000012">
        <property type="entry name" value="Acylphosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020456">
        <property type="entry name" value="Acylphosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001792">
        <property type="entry name" value="Acylphosphatase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036046">
        <property type="entry name" value="Acylphosphatase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017968">
        <property type="entry name" value="Acylphosphatase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47268">
        <property type="entry name" value="ACYLPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47268:SF4">
        <property type="entry name" value="ACYLPHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00708">
        <property type="entry name" value="Acylphosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00112">
        <property type="entry name" value="ACYLPHPHTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54975">
        <property type="entry name" value="Acylphosphatase/BLUF domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00150">
        <property type="entry name" value="ACYLPHOSPHATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51160">
        <property type="entry name" value="ACYLPHOSPHATASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acylphosphatase-like" evidence="8">
        <location>
            <begin position="5"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="20"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00047645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="95" mass="10910" checksum="A0886A29DEDC2E4C" modified="2008-05-20" version="1">MDHVRAHLYIRGKVQGVFFRQSMREVAARNGVRGWVRNRSDGRTVEAVLEGPRDAVAKVIEWAKVGPPGARVEDVEVTWEEYRGEFTDFRILPTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB99</accession>
    <name>B1YB99_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0278</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349651.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB99"/>
    <dbReference type="STRING" id="444157.Tneu_0278"/>
    <dbReference type="GeneID" id="6165682"/>
    <dbReference type="KEGG" id="tne:Tneu_0278"/>
    <dbReference type="eggNOG" id="arCOG07483">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091234_0_0_2"/>
    <dbReference type="OrthoDB" id="24329at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="222" mass="23542" checksum="C6499E92F2923CEA" modified="2008-05-20" version="1">MRWWVIAGGVAAAAVVALFLLSSAGPPFDSHNYEVNYTIKLTYTVLGQTTTVTGWLLVGEGPKGNYTAYVLRLPGAGDAVYYTAAEGGRVYSAVCFGNHCIKGSGGSNWQWVRWWQQAIATVGERKTGTCSHLGYTGEYIETTGKMNLGSWVPGPVETSGTYRAGVCTVRGVPLKLTVWGGVGTQTGGQSAVYSVELDVSAVTVGPFNEAHYSEILTKVGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBD8</accession>
    <name>B1YBD8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PIN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0318</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349690.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBD8"/>
    <dbReference type="STRING" id="444157.Tneu_0318"/>
    <dbReference type="GeneID" id="6166221"/>
    <dbReference type="KEGG" id="tne:Tneu_0318"/>
    <dbReference type="eggNOG" id="arCOG05545">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1599078_0_0_2"/>
    <dbReference type="OrthoDB" id="38271at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021799">
        <property type="entry name" value="PIN-like_prokaryotic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11848">
        <property type="entry name" value="DUF3368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="184" mass="21032" checksum="769078384BE08267" modified="2008-05-20" version="1">MEAIADASFLIDWSRYGGRDLLFRIFDVVHIPESVLREIKHPPAVDWVAEKLAEGALALFTETSEVEARAREVMAASRRRPLKAVDYPEAVCLAAGLMYGYVVLTENGGAYFAPQVLNLNVTVWRAFEVLVEGWRRGLVRDIEEELRRYERETLHLFRRRDWEYVWSLKKRLGTSGGGTRTGSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBF6</accession>
    <name>B1YBF6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aspartate-semialdehyde dehydrogenase</fullName>
            <ecNumber evidence="6">1.2.1.11</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1841</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the aspartate-semialdehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.11" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351177.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBF6"/>
    <dbReference type="STRING" id="444157.Tneu_1841"/>
    <dbReference type="GeneID" id="6164767"/>
    <dbReference type="KEGG" id="tne:Tneu_1841"/>
    <dbReference type="eggNOG" id="arCOG00494">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049966_1_0_2"/>
    <dbReference type="OrthoDB" id="38238at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004073">
        <property type="term" value="F:aspartate-semialdehyde dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd18130">
        <property type="entry name" value="ASADH_C_arch_fung_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02315">
        <property type="entry name" value="ScASADH_like_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.10">
        <property type="entry name" value="Dihydrodipicolinate Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051823">
        <property type="entry name" value="ASADH-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005676">
        <property type="entry name" value="Asp_semi-ald_DH_pep-lack"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012280">
        <property type="entry name" value="Semialdhyde_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00978">
        <property type="entry name" value="asd_EA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006416">
        <property type="entry name" value="PRK08664.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46718">
        <property type="entry name" value="ASPARTATE-SEMIALDEHYDE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46718:SF1">
        <property type="entry name" value="ASPARTATE-SEMIALDEHYDE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02774">
        <property type="entry name" value="Semialdhyde_dhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000148">
        <property type="entry name" value="ASA_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55347">
        <property type="entry name" value="Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="3 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Semialdehyde dehydrogenase NAD-binding" evidence="5">
        <location>
            <begin position="5"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="4">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000148-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="338" mass="37194" checksum="3C846C4300C98837" modified="2008-05-20" version="1">MDRLRVYILGATGLVGQRYVQMLAKHPWFEVAGLAASEKSAGKTLQQAGWVLDEPPPPQVAEMKIEKLDVEKIPRVDFVFSALPSEVAAKVEPQLAARGHVVLSNSSNMRMDPDIPLVVPEINPDDLSLLERQKAERGWSGGVVKKPNCTTTILNLPLKPVLDEWGIEKLHVVTMQALSGAGYSGVPSVAITDNLIPYIRGEEEKVVSETKKILKTDFEIYATTTRVPVLDGHTEVVYVDTKRDFDPAAVADAFAKFRGLPQELKLPTAPERPIEVRPQIDRPQPRLDRWAGNGMAVVVGRIRRLAPRKLAFVVLGHNTVRGAAGNSILTAELMVKTR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBH2</accession>
    <name>NCPP_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Probable inosine/xanthosine triphosphatase</fullName>
            <shortName evidence="1">ITPase/XTPase</shortName>
            <ecNumber evidence="1">3.6.1.73</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Non-canonical purine NTP phosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Non-standard purine NTP phosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Nucleoside-triphosphate phosphatase</fullName>
            <shortName evidence="1">NTPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_1859</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA/RNA precursor pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>XTP + H2O = XDP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28406"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:59884"/>
            <dbReference type="ChEBI" id="CHEBI:61314"/>
            <dbReference type="EC" id="3.6.1.73"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ITP + H2O = IDP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28330"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58280"/>
            <dbReference type="ChEBI" id="CHEBI:61402"/>
            <dbReference type="EC" id="3.6.1.73"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="1">Binds 1 divalent metal cation per subunit; can use either Mg(2+) or Mn(2+).</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the YjjX NTPase family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.73" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351193.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBH2"/>
    <dbReference type="SMR" id="B1YBH2"/>
    <dbReference type="STRING" id="444157.Tneu_1859"/>
    <dbReference type="GeneID" id="6164840"/>
    <dbReference type="KEGG" id="tne:Tneu_1859"/>
    <dbReference type="eggNOG" id="arCOG01221">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_087417_0_1_2"/>
    <dbReference type="OrthoDB" id="52857at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103023">
        <property type="term" value="F:ITPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017111">
        <property type="term" value="F:ribonucleoside triphosphate phosphatase activity"/>
        <property type="evidence" value="ECO:0000250"/>
        <property type="project" value="UniProtKB"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006772">
        <property type="term" value="P:thiamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.90.950.10:FF:000002">
        <property type="entry name" value="Inosine/xanthosine triphosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00648">
        <property type="entry name" value="Non_canon_purine_NTPase_YjjX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029001">
        <property type="entry name" value="ITPase-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002786">
        <property type="entry name" value="Non_canon_purine_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026533">
        <property type="entry name" value="NTPase/PRRC1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050299">
        <property type="entry name" value="YjjX_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00258">
        <property type="entry name" value="inosine/xanthosine triphosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34699">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34699:SF2">
        <property type="entry name" value="NON-CANONICAL PURINE NTP PHOSPHATASE_PRRC1 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01931">
        <property type="entry name" value="NTPase_I-T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52972">
        <property type="entry name" value="ITPase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0464">Manganese</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0546">Nucleotide metabolism</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000130950" description="Probable inosine/xanthosine triphosphatase">
        <location>
            <begin position="1"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="65"/>
            <end position="66"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00648"/>
        </source>
    </evidence>
    <sequence length="182" mass="18929" checksum="E421C7DADDD9A9B3" modified="2008-05-20" version="1">MKVAVASRNPNKVRAVEEAYRLFGIPARVSSVDKPPSLPPQPVGLEAVVAGAVERAKAALAAAGEAEHGVGIEAGALEAGGRHLDVTVAAVADRGGLVTLGFGPAFQIPDVFLGDVLRGVELGVLAERHFGKAAVGYREGIIGLLTRGRVTRLDLNVVAVAMALVPRLPANAQLYRFWKTAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBI1</accession>
    <name>B1YBI1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">AAA ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1868</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBI1"/>
    <dbReference type="STRING" id="444157.Tneu_1868"/>
    <dbReference type="KEGG" id="tne:Tneu_1868"/>
    <dbReference type="eggNOG" id="arCOG01174">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_730790_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014774">
        <property type="entry name" value="KaiC-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637:SF2">
        <property type="entry name" value="PROTEIN GVPD 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637">
        <property type="entry name" value="UPF0273 PROTEIN TM_0370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06745">
        <property type="entry name" value="ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA+ ATPase" evidence="3">
        <location>
            <begin position="22"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="AAA+ ATPase" evidence="3">
        <location>
            <begin position="229"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="378" mass="41522" checksum="A1CF9EABB7F5DD9C" modified="2008-05-20" version="1">MRIGGYTKKYFRERAAIGSMMLRGVTLVYGPPGAGKTTFAAWYTYNSYDRVFWVSAFEDEETFRRNMAALGYNFGGKLVYWEAVLAGAEAFFNTLLDAVAREKPQALVIDSVTEFLAAGGGLDILHNIIYRAVKQSGVDVFLTAEREVAQRVAYVADNVIELFYEVYPYGAVREAVVRKIRGGRAGYTMPYVILEGAGLLFIAPSSVSRQVERLETLTCIDEVVGGIYKGLLHAFVGPPGAGKTWHMLNVARSLRDRGVEPLLISISGAGSIYAEKFGVETIDVGLDLGEFYAALATSKAPVIFIRGLETFSKLYGIQLLYTAVRTLLKLARTGRAVVVSLRDLYDLDVLFDVIVKIEDRAVTGVRAPGGKIGERVRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBI2</accession>
    <name>B1YBI2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Type II secretion system protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1869</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351203.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBI2"/>
    <dbReference type="STRING" id="444157.Tneu_1869"/>
    <dbReference type="GeneID" id="6165082"/>
    <dbReference type="KEGG" id="tne:Tneu_1869"/>
    <dbReference type="eggNOG" id="arCOG01812">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1072072_0_0_2"/>
    <dbReference type="OrthoDB" id="28514at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.81.30">
        <property type="entry name" value="Type II secretion system (T2SS), domain F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR056569">
        <property type="entry name" value="ArlJ-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042094">
        <property type="entry name" value="T2SS_GspF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35402">
        <property type="entry name" value="INTEGRAL MEMBRANE PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35402:SF1">
        <property type="entry name" value="TYPE II SECRETION SYSTEM PROTEIN GSPF DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="195"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="235"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="Type II secretion system protein GspF" evidence="7">
        <location>
            <begin position="88"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="262" mass="28089" checksum="0993537B42D61690" modified="2008-05-20" version="1">MRGLLYELYRQSGLAFSYRRYLAALTAAPAGAAAAAGAAGLLLLGPAAGAAFAAIAGLLAFAGLLLYPVHLVSARRSHFENNFVYTLSVLLPLLAAGVPLGRAVTRLAEVEDDRYIARELALAAREMVVMGSSPEEALRNSAARVPSPTYRETVEVLTKAARITQRVDLVLLARLDWMLRAKQVRAQSLVRSLSLMFEVFVVAVMLLPIMVYIVALSFSPLGALQIGGLALDPLTLMALIGLVYTPVVGVVFYLVFDSITKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBJ6</accession>
    <name>B1YBJ6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1883</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351217.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBJ6"/>
    <dbReference type="STRING" id="444157.Tneu_1883"/>
    <dbReference type="GeneID" id="6165111"/>
    <dbReference type="KEGG" id="tne:Tneu_1883"/>
    <dbReference type="eggNOG" id="arCOG05625">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1269972_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="214" mass="23008" checksum="3AF8FE0001735AF9" modified="2008-05-20" version="1">MIVLTQRYGALPLEEGCIKLVGAAPAFTRDSCAGRYLLVKRGAGVYLERRPVKPEGLAFYIAVGPPRRVEYAGGGFRFGDGLDLFHGFAKRGLWRELTPSLHAAVSTYAARCAYCTAHIEAAYSRRPASSRAPGVYIEVEGRAGRYRAVAVSLPGRSNAFREAVAKLLDEAEAIYSIRLGAAVDTPLDLYLQPPVPLYRLAPAPAIAAVARGNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBJ8</accession>
    <name>B1YBJ8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1885</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351219.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBJ8"/>
    <dbReference type="STRING" id="444157.Tneu_1885"/>
    <dbReference type="GeneID" id="6164937"/>
    <dbReference type="KEGG" id="tne:Tneu_1885"/>
    <dbReference type="eggNOG" id="arCOG04056">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_184944_1_0_2"/>
    <dbReference type="OrthoDB" id="28579at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051011">
        <property type="entry name" value="Metal_resp_trans_reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43132">
        <property type="entry name" value="ARSENICAL RESISTANCE OPERON REPRESSOR ARSR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43132:SF2">
        <property type="entry name" value="ARSENICAL RESISTANCE OPERON REPRESSOR ARSR-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01022">
        <property type="entry name" value="HTH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="92" mass="10123" checksum="75C73265D37A0AB7" modified="2008-05-20" version="1">MIDLVLGSPTRIKIVMALWLFGEMNMSELARRVGATQEAVSEQLEQLVKYGVVEVKYVGRVRLYKLSSDPAIRRLAEAFVEAEGALAASGPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBK4</accession>
    <name>B1YBK4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Cation diffusion facilitator family transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1891</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351225.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBK4"/>
    <dbReference type="STRING" id="444157.Tneu_1891"/>
    <dbReference type="GeneID" id="6165129"/>
    <dbReference type="KEGG" id="tne:Tneu_1891"/>
    <dbReference type="eggNOG" id="arCOG01474">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013430_3_0_2"/>
    <dbReference type="OrthoDB" id="8907at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:monoatomic cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1510.10">
        <property type="entry name" value="Cation efflux protein transmembrane domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1350">
        <property type="entry name" value="Cation efflux protein, cytoplasmic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002524">
        <property type="entry name" value="Cation_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027470">
        <property type="entry name" value="Cation_efflux_CTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036837">
        <property type="entry name" value="Cation_efflux_CTD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR058533">
        <property type="entry name" value="Cation_efflux_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027469">
        <property type="entry name" value="Cation_efflux_TMD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050291">
        <property type="entry name" value="CDF_Transporter"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01297">
        <property type="entry name" value="CDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43840">
        <property type="entry name" value="MITOCHONDRIAL METAL TRANSPORTER 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43840:SF15">
        <property type="entry name" value="MITOCHONDRIAL METAL TRANSPORTER 1-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01545">
        <property type="entry name" value="Cation_efflux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16916">
        <property type="entry name" value="ZT_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160240">
        <property type="entry name" value="Cation efflux protein cytoplasmic domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161111">
        <property type="entry name" value="Cation efflux protein transmembrane domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="31"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="108"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="150"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="174"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="Cation efflux protein transmembrane" evidence="8">
        <location>
            <begin position="9"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="Cation efflux protein cytoplasmic" evidence="9">
        <location>
            <begin position="213"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="280"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="293"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="305"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF16916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="314" mass="32934" checksum="76D33DBD5DB94CD6" modified="2008-05-20" version="1">MDKAKAALTSLLAGLAVTALKIVAWIQSSSVAVLADATHSAVDLLAVAVTYIAVKASLKPPDEEHPYGHHKAETLGGIGGSLAVMASAALVAYEAFTKLLRWEPYTPTLLGAAVMAVAMAIDLNRVLVLRRFRGVSRALEADALHFSTDLASSATILAALLLGAAAASHAPEAFAIWGPAVDVALGAAITAYFTRLSLSLLKTSVVELLDYAPPDVVARTRQLALGVDGVQSVKSVKVRKSGSVYHADLTITVDENLTVKEAHEIADQVEKTLRKELGGEVVIHVEPQKTTEETPSAASRSPQEPSGPPSRSPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBS1</accession>
    <name>B1YBS1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Formate dehydrogenase, cytochrome b556 subunit (Formate dehydrogenase gamma subunit)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0355</name>
        <name evidence="9" type="ordered locus">Tneu_1054</name>
    </gene>
    <organism evidence="8 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8 10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349725.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBS1"/>
    <dbReference type="STRING" id="444157.Tneu_0355"/>
    <dbReference type="GeneID" id="6166283"/>
    <dbReference type="KEGG" id="tne:Tneu_0355"/>
    <dbReference type="KEGG" id="tne:Tneu_1054"/>
    <dbReference type="eggNOG" id="arCOG05636">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1154403_0_0_2"/>
    <dbReference type="OrthoDB" id="27017at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.950.20">
        <property type="entry name" value="Transmembrane di-heme cytochromes, Chain C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011577">
        <property type="entry name" value="Cyt_b561_bac/Ni-Hgenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051542">
        <property type="entry name" value="Hydrogenase_cytochrome"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30485">
        <property type="entry name" value="NI/FE-HYDROGENASE 1 B-TYPE CYTOCHROME SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30485:SF0">
        <property type="entry name" value="NI_FE-HYDROGENASE 1 B-TYPE CYTOCHROME SUBUNIT-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01292">
        <property type="entry name" value="Ni_hydr_CYTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="Transmembrane di-heme cytochromes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="71"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="137"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="181"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome b561 bacterial/Ni-hydrogenase" evidence="7">
        <location>
            <begin position="8"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="235" mass="25641" checksum="FEEBC15AACF64259" modified="2008-05-20" version="1">MDKVEVVSIGYRIAHHWNLLLFTVLAITGGALFAIEVLAPLVYAVGAPLAAAVGTDAVTAGAQLLRTSHRFLGHIWGALLLVYAVNLLFFRKVRIFDALRKPLGRQIREAKALAGHYLLGRPLPEDVKASMERHNVFVAYMALLLIASVVLLSISGVALVYRDALGLSVEEARLMLLLHDVGFALGLLFVALHVFAVLHPANRPLLNAMFGDGTIPLDWAKTHMPNYLRRRGAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBW9</accession>
    <name>B1YBW9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Nitrate reductase gamma subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349773.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBW9"/>
    <dbReference type="STRING" id="444157.Tneu_0405"/>
    <dbReference type="GeneID" id="6166166"/>
    <dbReference type="KEGG" id="tne:Tneu_0405"/>
    <dbReference type="eggNOG" id="arCOG06072">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1080177_0_0_2"/>
    <dbReference type="OrthoDB" id="30968at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036197">
        <property type="entry name" value="NarG-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103501">
        <property type="entry name" value="Respiratory nitrate reductase 1 gamma chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="138"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="211"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="257" mass="28969" checksum="4CFE8A3B6198CBCF" modified="2008-05-20" version="1">MKELLELALWVFFPVALVIFAFGAAYRILRYVFLYQKGVYVHRSTGAGAKIKGLVMTFLNPIIFNIRTKPIDFFAGLLALHFVGLILLIFLLAQHVAYLSAFIPFYSLLWPFALPISSITGALTVTSPIGGEIRVSPIWGPLTVVLNGDVLTIFSLIGIGYKIVEKLWEKAHGAKNVRVGDLLIWPLLFVIVVTGWLAAHHYPPGIENYRLVLGLHIAASALFVAVWPFTKFFHFVWGYWYGKLHEWYDVVIKRGAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC02</accession>
    <name>B1YC02_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1941</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC02"/>
    <dbReference type="KEGG" id="tne:Tneu_1941"/>
    <dbReference type="eggNOG" id="arCOG05437">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1623522_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="163" mass="18403" checksum="566B8E984B652BE8" modified="2008-05-20" version="1">MARWARYTLSTSPLRYLFKSYPPDVERLPLQEVVSRVRNGENLEVLGYEGDVVLVDKVKGIVKGDFAQEDLSELKKRKPRGKPTEEQLELAAGLARRLGEAKKPFKVIFGPKEVTVRAGQGFIRVTEDVVKLAGYKSLEDDPIPLVIDLLRGYGEVKLLRPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC25</accession>
    <name>B1YC25_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">DNA-directed RNA polymerase subunit Rpo1N</fullName>
            <ecNumber evidence="13">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">DNA-directed RNA polymerase subunit A'</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">rpo1N</name>
        <name evidence="13" type="synonym">rpoA1</name>
        <name evidence="16" type="ordered locus">Tneu_1964</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="16" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12 13">DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Forms the clamp head domain.</text>
    </comment>
    <comment type="function">
        <text evidence="14">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11 13 14">
            <text>RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="13">Binds at least 2 Zn(2+) per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Part of the RNA polymerase complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 13 14">Belongs to the RNA polymerase beta' chain family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="13"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351298.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC25"/>
    <dbReference type="STRING" id="444157.Tneu_1964"/>
    <dbReference type="GeneID" id="6164357"/>
    <dbReference type="KEGG" id="tne:Tneu_1964"/>
    <dbReference type="eggNOG" id="arCOG04257">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000487_3_1_2"/>
    <dbReference type="OrthoDB" id="371812at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02582">
        <property type="entry name" value="RNAP_archeal_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.40.40.20:FF:000019">
        <property type="entry name" value="DNA-directed RNA polymerase II subunit RPB1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.132.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.2940">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.180">
        <property type="entry name" value="RNA polymerase ii"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.860.120">
        <property type="entry name" value="RNA polymerase II, clamp domain"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.274.100">
        <property type="entry name" value="RNA polymerase Rpb1, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00863">
        <property type="entry name" value="RNApol_arch_Rpo1N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045867">
        <property type="entry name" value="DNA-dir_RpoC_beta_prime"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000722">
        <property type="entry name" value="RNA_pol_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006592">
        <property type="entry name" value="RNA_pol_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007080">
        <property type="entry name" value="RNA_pol_Rpb1_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007066">
        <property type="entry name" value="RNA_pol_Rpb1_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042102">
        <property type="entry name" value="RNA_pol_Rpb1_3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007083">
        <property type="entry name" value="RNA_pol_Rpb1_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007081">
        <property type="entry name" value="RNA_pol_Rpb1_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044893">
        <property type="entry name" value="RNA_pol_Rpb1_clamp_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038120">
        <property type="entry name" value="Rpb1_funnel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012758">
        <property type="entry name" value="RPO1N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006336">
        <property type="entry name" value="PRK08566.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02390">
        <property type="entry name" value="RNA_pol_rpoA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19376">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19376:SF32">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04997">
        <property type="entry name" value="RNA_pol_Rpb1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00623">
        <property type="entry name" value="RNA_pol_Rpb1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04983">
        <property type="entry name" value="RNA_pol_Rpb1_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05000">
        <property type="entry name" value="RNA_pol_Rpb1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04998">
        <property type="entry name" value="RNA_pol_Rpb1_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00663">
        <property type="entry name" value="RPOLA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64484">
        <property type="entry name" value="beta and beta-prime subunits of DNA dependent RNA-polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2 13 14" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="8 13" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 13 14" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 13 14" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 13 14" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 13" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="RNA polymerase N-terminal" evidence="15">
        <location>
            <begin position="215"/>
            <end position="520"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="158"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="466"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="468"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="470"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00048552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00053389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU004279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="SMART" id="SM00663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ACB40879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="884" mass="100021" checksum="7DE401C5EFAF0640" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC27</accession>
    <name>RL30E_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein eL30</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">50S ribosomal protein L30e</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl30e</name>
        <name type="ordered locus">Tneu_1966</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic ribosomal protein eL30 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351300.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC27"/>
    <dbReference type="SMR" id="B1YC27"/>
    <dbReference type="STRING" id="444157.Tneu_1966"/>
    <dbReference type="GeneID" id="6165064"/>
    <dbReference type="KEGG" id="tne:Tneu_1966"/>
    <dbReference type="eggNOG" id="arCOG01752">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_130502_1_0_2"/>
    <dbReference type="OrthoDB" id="10759at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00481">
        <property type="entry name" value="Ribosomal_eL30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000231">
        <property type="entry name" value="Ribosomal_eL30"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039109">
        <property type="entry name" value="Ribosomal_eL30-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="Ribosomal_eL30-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022991">
        <property type="entry name" value="Ribosomal_eL30_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004038">
        <property type="entry name" value="Ribosomal_eL8/eL30/eS12/Gad45"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF002172">
        <property type="entry name" value="PRK01018.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11449">
        <property type="entry name" value="RIBOSOMAL PROTEIN L30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01248">
        <property type="entry name" value="Ribosomal_L7Ae"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="L30e-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00993">
        <property type="entry name" value="RIBOSOMAL_L30E_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000126033" description="Large ribosomal subunit protein eL30">
        <location>
            <begin position="1"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="101" mass="10791" checksum="1FCEAEF46F90BECD" modified="2008-05-20" version="1">MVDISRELQVALNTGKVIIGFEETKKAVLAGTPKLVILAANAPKWARGDIEYYAKLAGVPVFIFPGSSIELGAAAKRPHKIMALAVLDPGQSEILKVVEHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC52</accession>
    <name>B1YC52_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 9">Peptidyl-tRNA hydrolase</fullName>
            <shortName evidence="9">PTH</shortName>
            <ecNumber evidence="3 9">3.1.1.29</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">pth</name>
        <name evidence="10" type="ordered locus">Tneu_1991</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 9">
            <text>an N-acyl-L-alpha-aminoacyl-tRNA + H2O = an N-acyl-L-amino acid + a tRNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:54448"/>
            <dbReference type="Rhea" id="RHEA-COMP:10123"/>
            <dbReference type="Rhea" id="RHEA-COMP:13883"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:59874"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:138191"/>
            <dbReference type="EC" id="3.1.1.29"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6 9">Belongs to the PTH2 family.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.29" evidence="3 9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351325.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC52"/>
    <dbReference type="STRING" id="444157.Tneu_1991"/>
    <dbReference type="GeneID" id="6166155"/>
    <dbReference type="KEGG" id="tne:Tneu_1991"/>
    <dbReference type="eggNOG" id="arCOG04228">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073661_2_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004045">
        <property type="term" value="F:peptidyl-tRNA hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02430">
        <property type="entry name" value="PTH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1490.10:FF:000001">
        <property type="entry name" value="Peptidyl-tRNA hydrolase 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1490.10">
        <property type="entry name" value="Bit1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00628">
        <property type="entry name" value="Pept_tRNA_hydro_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023476">
        <property type="entry name" value="Pep_tRNA_hydro_II_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034759">
        <property type="entry name" value="Pept_tRNA_hydro_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002833">
        <property type="entry name" value="PTH2"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00283">
        <property type="entry name" value="arch_pth2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003314">
        <property type="entry name" value="PRK04322.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12649">
        <property type="entry name" value="PEPTIDYL-TRNA HYDROLASE 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12649:SF11">
        <property type="entry name" value="PEPTIDYL-TRNA HYDROLASE 2, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01981">
        <property type="entry name" value="PTH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102462">
        <property type="entry name" value="Peptidyl-tRNA hydrolase II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013260"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00038050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00048707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00050038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="118" mass="12783" checksum="093016DEDB11E5CF" modified="2008-05-20" version="1">MKMSIVIRRDLRISCGKAAAQAGHAAVECVLKAMDSGRWRRWLDQWLAEGQKKIVLAAENLEHLYELYKKAASLDLPAAVVVDAGLTEIPPGTPTALCVGPAPDELVDAVTGSLKLYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC63</accession>
    <name>B1YC63_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Circadian clock protein, KaiC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_2003</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351336.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC63"/>
    <dbReference type="STRING" id="444157.Tneu_2003"/>
    <dbReference type="GeneID" id="6166164"/>
    <dbReference type="KEGG" id="tne:Tneu_2003"/>
    <dbReference type="eggNOG" id="arCOG01171">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023669_0_0_2"/>
    <dbReference type="OrthoDB" id="27015at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014774">
        <property type="entry name" value="KaiC-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010624">
        <property type="entry name" value="KaiC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637">
        <property type="entry name" value="UPF0273 PROTEIN TM_0370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43637:SF1">
        <property type="entry name" value="UPF0273 PROTEIN TM_0370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06745">
        <property type="entry name" value="ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01874">
        <property type="entry name" value="DNAREPAIRADA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51146">
        <property type="entry name" value="KAIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KaiC" evidence="3">
        <location>
            <begin position="9"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="258" mass="28595" checksum="AFFF6A1D681D049C" modified="2008-05-20" version="1">MSEYHLYYETVPTGVEGLDTVLGGGFIRGRTYLISGETGTAKTLTALTFLIQGALKYGEPGIYISVDETYEQFVEGARRFGWDIEELRAKGLLEVLVPEMDIVERIREKDPTAIAKSLVASIREYVAALNAQRLVIDPIAPLVSLDKDVQVLREYIRVLVMSIEREIGTTNIITTEIPSGSGAISRYGVEEFLATGVFIMGIAKARDGAFKRVMFVRKMRWSPVHPGIYEVEIVPKVGIVVKGQVKEPLVPVTYLPTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCA0</accession>
    <name>B1YCA0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">5-oxoprolinase (ATP-hydrolyzing)</fullName>
            <ecNumber evidence="4">3.5.2.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0466</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.5.2.9" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349833.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCA0"/>
    <dbReference type="STRING" id="444157.Tneu_0466"/>
    <dbReference type="GeneID" id="6165691"/>
    <dbReference type="KEGG" id="tne:Tneu_0466"/>
    <dbReference type="eggNOG" id="arCOG01511">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002157_1_2_2"/>
    <dbReference type="OrthoDB" id="8261at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017168">
        <property type="term" value="F:5-oxoprolinase (ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049517">
        <property type="entry name" value="ACX-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008040">
        <property type="entry name" value="Hydant_A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002821">
        <property type="entry name" value="Hydantoinase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045079">
        <property type="entry name" value="Oxoprolinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365">
        <property type="entry name" value="5-OXOPROLINASE RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365:SF23">
        <property type="entry name" value="HYPOTHETICAL 5-OXOPROLINASE (EUROFUNG)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19278">
        <property type="entry name" value="Hydant_A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05378">
        <property type="entry name" value="Hydant_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01968">
        <property type="entry name" value="Hydantoinase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydantoinase/oxoprolinase N-terminal" evidence="2">
        <location>
            <begin position="6"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="Hydantoinase A/oxoprolinase" evidence="1">
        <location>
            <begin position="195"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="domain" description="Acetophenone carboxylase-like C-terminal" evidence="3">
        <location>
            <begin position="531"/>
            <end position="641"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="649" mass="70297" checksum="4ABF3F1EC7766E10" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCB4</accession>
    <name>B1YCB4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349847.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCB4"/>
    <dbReference type="STRING" id="444157.Tneu_0480"/>
    <dbReference type="CAZy" id="GT2">
        <property type="family name" value="Glycosyltransferase Family 2"/>
    </dbReference>
    <dbReference type="GeneID" id="6165911"/>
    <dbReference type="KEGG" id="tne:Tneu_0480"/>
    <dbReference type="eggNOG" id="arCOG01398">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_846269_0_0_2"/>
    <dbReference type="OrthoDB" id="42128at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016758">
        <property type="term" value="F:hexosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22916">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22916:SF3">
        <property type="entry name" value="UDP-GLCNAC:BETAGAL BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE-LIKE PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyltransferase 2-like" evidence="1">
        <location>
            <begin position="5"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="328" mass="37922" checksum="5C179DAED7E81673" modified="2008-05-20" version="1">MKIGVIISAYRRYHFLPQAIESVLKQTRKADEVVVVVDDAEKVKSYPVYIVESKAEKYGEMVAEGIRALDSDIIAFLEDDDIFHEDKLKIAEKAFKEGGTVALHHKQVYIDVNGNIIKDGSLVHSYEIGQPQVELTINKFNASKIFKKFPAIHHNPSSMLIKKEVFYEYKDLFVNIDLLLDFTLFITSLSLGRVKHIPDRLTFYRIGAGNSQLQNGDLTTMNKIICTLNRYSLDLDLLLKEIHDNNLRKLILKFYFSNAIPVYIFNTIFTCRRVYNISYYRLISRLLKGIFMNQYPTPRSFIALLLIPILGRRKVAHFALKYFLKSPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCD1</accession>
    <name>B1YCD1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SMC domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0499</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349864.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCD1"/>
    <dbReference type="STRING" id="444157.Tneu_0499"/>
    <dbReference type="GeneID" id="6165950"/>
    <dbReference type="KEGG" id="tne:Tneu_0499"/>
    <dbReference type="eggNOG" id="arCOG03239">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063816_1_1_2"/>
    <dbReference type="OrthoDB" id="25344at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041685">
        <property type="entry name" value="AAA_GajA/Old/RecF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051396">
        <property type="entry name" value="Bact_Antivir_Def_Nuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014555">
        <property type="entry name" value="RecF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43581">
        <property type="entry name" value="ATP/GTP PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43581:SF4">
        <property type="entry name" value="ATP_GTP PHOSPHATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13175">
        <property type="entry name" value="AAA_15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13304">
        <property type="entry name" value="AAA_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029347">
        <property type="entry name" value="RecF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease GajA/Old nuclease/RecF-like AAA" evidence="1">
        <location>
            <begin position="10"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="ATPase AAA-type core" evidence="2">
        <location>
            <begin position="230"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="349" mass="39096" checksum="88174BA0B1DD540E" modified="2008-05-20" version="1">MGESAFGVVRELEVKNFRGVREGSIKDFAAVNIFVGRNGTGKSSILEALYIALKPDDGLAYVVRRRGWFGLASAEALFYHGQKEIHISATLKEGKKTELKIKPGMPSADTIPVLRERGLNVEELLALDLETVGGVKAAQLYMDEDGKLHYIFLKEWSRPIYEAVFVDWNSVYQYGSPEEAYSRMVAKAGAAAKESVVKALRSQYKDLSDVMPLYVRGRWVLHLVFENISVPFYAVGDGVRYALMLLIQALTPSGAAVMLEEPELHTHPSLMKIVANAILRSHIDRGNQIFVTTHSLELIKMITEEARGMGLKNLKVFRLALDRGALHAEEYTLDEAWRALEKLGWDLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCF1</accession>
    <name>B1YCF1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl transferase, group 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0521</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349884.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCF1"/>
    <dbReference type="STRING" id="444157.Tneu_0521"/>
    <dbReference type="CAZy" id="GT4">
        <property type="family name" value="Glycosyltransferase Family 4"/>
    </dbReference>
    <dbReference type="GeneID" id="6165835"/>
    <dbReference type="KEGG" id="tne:Tneu_0521"/>
    <dbReference type="eggNOG" id="arCOG01403">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009583_2_1_2"/>
    <dbReference type="OrthoDB" id="132546at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050194">
        <property type="entry name" value="Glycosyltransferase_grp1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45947">
        <property type="entry name" value="SULFOQUINOVOSYL TRANSFERASE SQD2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45947:SF3">
        <property type="entry name" value="SULFOQUINOVOSYL TRANSFERASE SQD2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyltransferase subfamily 4-like N-terminal" evidence="2">
        <location>
            <begin position="15"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyl transferase family 1" evidence="1">
        <location>
            <begin position="194"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="330" mass="35552" checksum="BACC4B9FD5B7B8FF" modified="2008-05-20" version="1">MRVLLVSPGGPGRLGGVEYVVYSLARALAGVGHRVVVLAGEPGVGGLRVLDLGGVEVHLWPVWSPGGAYHIPRRLGELRRYVARLAAEADVVHVHSVHAVFSVEAGVAAGEAGAPVVLSPHYHGGGHTPLREALWTVWRRRVAGLAGAVGAVVAASRPEAERWEEDFGVGAVVVPHGVGDDVFLYRWRGASSDYAVYAGRLERYKRVDKAYEVAAALGLRLLVVGDGPHLRALRRRLRGALFLPPQPRERYLDLLSGARYAINMSAREVYSIFVAEALAMGVPALLSREVAEIYMPGASGEVNEVTRAEVRPWSQVVPEVLAVYRGIEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCG5</accession>
    <name>B1YCG5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">1,4-dihydroxy-6-naphtoate synthase</fullName>
            <ecNumber evidence="3">4.1.99.29</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Menaquinone biosynthetic enzyme MqnD</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">mqnD</name>
        <name evidence="4" type="ordered locus">Tneu_0535</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>cyclic dehypoxanthinylfutalosinate = 1,4-dihydroxy-6-naphthoate + dihydroxyacetone</text>
            <dbReference type="Rhea" id="RHEA:33087"/>
            <dbReference type="ChEBI" id="CHEBI:16016"/>
            <dbReference type="ChEBI" id="CHEBI:64254"/>
            <dbReference type="ChEBI" id="CHEBI:64270"/>
            <dbReference type="EC" id="4.1.99.29"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Quinol/quinone metabolism; menaquinone biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the MqnA/MqnD family. MqnD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.1.99.29" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349898.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCG5"/>
    <dbReference type="STRING" id="444157.Tneu_0535"/>
    <dbReference type="GeneID" id="6165710"/>
    <dbReference type="KEGG" id="tne:Tneu_0535"/>
    <dbReference type="eggNOG" id="arCOG00654">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070326_0_0_2"/>
    <dbReference type="OrthoDB" id="49741at2157"/>
    <dbReference type="UniPathway" id="UPA00079"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016830">
        <property type="term" value="F:carbon-carbon lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00996">
        <property type="entry name" value="MqnD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003773">
        <property type="entry name" value="Menaquinone_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030869">
        <property type="entry name" value="MqnD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37167">
        <property type="entry name" value="1,4-DIHYDROXY-6-NAPHTOATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37167:SF1">
        <property type="entry name" value="1,4-DIHYDROXY-6-NAPHTOATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02621">
        <property type="entry name" value="VitK2_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0456">Lyase</keyword>
    <keyword evidence="1 3" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="103"/>
            <end position="104"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00996"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="267" mass="29224" checksum="BAAD61A904E5A9CF" modified="2008-05-20" version="1">MIKVAHSPDADDAYMFYGIASGAVKMPAPHVEFLADIETLNRLAVEELLDVSAVSVHAYAYVCGRYYVMRVGASMGEGYGPVVVARPEADRPRHVAVPGRYTTAALLLKLAMPGVKAVEVPFDRVLEAVAAGVVDAGVLIHEGQITYGRYGLRKLLDLGEWWLRETGLPTPLGIDVVRKELGRGLAEALAEALRSSIRYADEHREEALRYAQRFSRGLSLEDTARFVDMYVNAYTRDLGSRGEKAIEELLARASEGGLAPACRPEYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCH5</accession>
    <name>B1YCH5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0545</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349908.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCH5"/>
    <dbReference type="STRING" id="444157.Tneu_0545"/>
    <dbReference type="GeneID" id="6165544"/>
    <dbReference type="KEGG" id="tne:Tneu_0545"/>
    <dbReference type="eggNOG" id="arCOG00924">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="97750at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015807">
        <property type="term" value="P:L-amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03224">
        <property type="entry name" value="ABC_TM1139_LivF_branched"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052156">
        <property type="entry name" value="BCAA_Transport_ATP-bd_LivF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43820">
        <property type="entry name" value="HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43820:SF4">
        <property type="entry name" value="HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="3"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="234" mass="25365" checksum="C2D4C9737AFC836E" modified="2008-05-20" version="1">MALTVSQLVSGYGKLQVLFGVSVEVPRRSVVSIVGPNGAGKTTTLLTVMGVVKPWGGVVALEGRDVTKAPPHEKVELGLALVPEGRRLFTDMTVEENLLMGAYSRRARASMHDSLELVYSLFPRLRERRRQKAGTMSGGEQQMLAIGRALMSRPRVLMIDEPSAGLAPKVAGELFQTIARLRDEMSVVLVEQNVAAAFEISDYVYVIEGGRVAASGTPEELGRDDGVRRIYLGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCJ3</accession>
    <name>B1YCJ3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">CRISPR-associated RAMP protein, Cmr4 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0564</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCJ3"/>
    <dbReference type="STRING" id="444157.Tneu_0564"/>
    <dbReference type="KEGG" id="tne:Tneu_0564"/>
    <dbReference type="eggNOG" id="arCOG02657">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047795_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013410">
        <property type="entry name" value="CRISPR-assoc_RAMP_Cmr4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005537">
        <property type="entry name" value="RAMP_III_fam"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02580">
        <property type="entry name" value="cas_RAMP_Cmr4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36700">
        <property type="entry name" value="CRISPR SYSTEM CMR SUBUNIT CMR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36700:SF1">
        <property type="entry name" value="CRISPR SYSTEM CMR SUBUNIT CMR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03787">
        <property type="entry name" value="RAMPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CRISPR type III-associated protein" evidence="2">
        <location>
            <begin position="7"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="296" mass="32125" checksum="841CE1B49B6E8A7A" modified="2008-05-20" version="1">MGGVLLLQAVTPLHAGVGRSEAAHVDLLVQRDEFGLPAIWASSLKGALKSHAKMKKDPLVHCVFGRDAVGQAPEGISGVTLFDARLLLIPARSLRGVWIYVTTPHMLRAFIVYLESLVPLGVEGAKTLLDVAKKALDISRDAPVVSSQSYLWDGSLVINELAIKQAKVNGDLAKFTEQLAKHLSLPKTDLAVVGDDIAKTLVDRSMLIQYRVRLTERKTVAEGALWSEEYLPQFSVLHSAVVCRAAKCREGNEERQLKAEEVCVKFRELAAGGGRGYVWVGGKETIGRGLVEVALV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="40" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCK3</accession>
    <name>B1YCK3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0574</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCK3"/>
    <dbReference type="KEGG" id="tne:Tneu_0574"/>
    <dbReference type="eggNOG" id="arCOG09845">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2204211_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="107" mass="12103" checksum="5EF9A16661D93403" modified="2008-05-20" version="1">MLVATETFSPYLFGAIPADEYLVAYTPNFYRQVKFALDIYRAFGDGKAVRRALVSRDNPYISYLSLRKALEERGGQGHCYYIPKLSGTGATYLALKKLEREGLLKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCK7</accession>
    <name>B1YCK7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">CRISPR-associated endonuclease Cas1</fullName>
            <ecNumber evidence="9">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">cas1</name>
        <name evidence="10" type="ordered locus">Tneu_0578</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="9">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer, forms a heterotetramer with a Cas2 homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the CRISPR-associated endonuclease Cas1 family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349940.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCK7"/>
    <dbReference type="STRING" id="444157.Tneu_0578"/>
    <dbReference type="GeneID" id="6164759"/>
    <dbReference type="KEGG" id="tne:Tneu_0578"/>
    <dbReference type="eggNOG" id="arCOG01452">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052779_0_0_2"/>
    <dbReference type="OrthoDB" id="2216at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09634">
        <property type="entry name" value="Cas1_I-II-III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.920">
        <property type="entry name" value="CRISPR-associated endonuclease Cas1, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.100.10.20">
        <property type="entry name" value="CRISPR-associated endonuclease Cas1, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01470">
        <property type="entry name" value="Cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050646">
        <property type="entry name" value="Cas1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002729">
        <property type="entry name" value="CRISPR-assoc_Cas1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042206">
        <property type="entry name" value="CRISPR-assoc_Cas1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042211">
        <property type="entry name" value="CRISPR-assoc_Cas1_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00287">
        <property type="entry name" value="cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34353">
        <property type="entry name" value="CRISPR-ASSOCIATED ENDONUCLEASE CAS1 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34353:SF2">
        <property type="entry name" value="CRISPR-ASSOCIATED ENDONUCLEASE CAS1 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01867">
        <property type="entry name" value="Cas_Cas1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="7 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 9" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8 9" id="KW-0464">Manganese</keyword>
    <keyword evidence="2 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 9" id="KW-0540">Nuclease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="220"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="235"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="303" mass="33430" checksum="93B1AA4209EDC9DE" modified="2008-05-20" version="1">MEVVVKEHGVSLGYSRWALVVRRRGGAAERIPIHQVDRLWILTGGVSISSRLVRALARSFVDVVFFDGRGNPAARLFPPEANGTVAHRRAQYEAYLNGRGLELAKLVVYGKIVNQAAALRRAGLWRRELYQELAGAASRVAEAAAAVPRCGDPQCVLGHEGRAAAEYWAALSKAFGTPTRDPNASDPFNLALNYGYGILRYAVWRQAVIHGLDPYAGYLHVDKSGRPSLVLDLMEEFRPHIDLMVLKAKPSADWLEGGVLKREARAALVEKWLEMRLEPTIARQVGLAVAHLEGRGVYTPHKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCK8</accession>
    <name>B1YCK8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CRISPR-associated protein, Csa1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0579</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349941.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCK8"/>
    <dbReference type="STRING" id="444157.Tneu_0579"/>
    <dbReference type="GeneID" id="6165689"/>
    <dbReference type="KEGG" id="tne:Tneu_0579"/>
    <dbReference type="eggNOG" id="arCOG04195">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_905009_0_0_2"/>
    <dbReference type="OrthoDB" id="19284at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009260">
        <property type="entry name" value="CRISPR-ass_Csa1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01896">
        <property type="entry name" value="cas_AF1879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06023">
        <property type="entry name" value="Csa1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009226">
        <property type="entry name" value="UCP009226"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="287" mass="31724" checksum="78BECCCBF3287DDB" modified="2008-05-20" version="1">MFREFRLVRGLRVEVGEELRGWRWGEPPVAPPPLGVRLSVSEIVGGVCESRRDLYLRRVAKVRVEANGSLKFGGYIHEVFRRSLVRLRRLVEEGLRGWDLISAFKPEEVAAEAAAAVGHEADQRGVELARFLAVQVAARVDEVAARGSFDPYMLAARAVPLLAEYVIDGRPLGLTLVRADALFHNVVVEVKVGPEDDRHALALAGYALAVEADEEVPVDAGLLIYISFNGGVKVRARPVAIGEGLRRQFLEERDRLMEFLHSGADPGLSPRCDDRCVFYRYCHGGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCP3</accession>
    <name>B1YCP3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0617</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCP3"/>
    <dbReference type="KEGG" id="tne:Tneu_0617"/>
    <dbReference type="eggNOG" id="arCOG06058">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1352156_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="216" mass="23868" checksum="AB4664B608B372D6" modified="2008-05-20" version="1">MFLCKPVELIVPLCGPWRDFQEVTFIAREGRVVAVGKTREGYDERAVAPEEVSDLLKPYLELYDWLGSEVGRALGVEYARGGRDLFSWLRSHVEFVDVAGARWGRAIDGVGPFSVRRFLRRVYMPYSGHSLTLSYVAFPFPDAVVHAENKARVMAVGSVVVEWGGVRVASAGIRTLAGAFLLAQAAPELLPLLGELKRALEEFVGRFYGVSGCEKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD49</accession>
    <name>B1YD49_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Anhydromevalonate phosphate decarboxylase</fullName>
            <ecNumber evidence="6">4.1.1.126</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_0773</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the conversion of trans-anhydromevalonate 5-phosphate (tAHMP) into isopentenyl phosphate. Involved in the archaeal mevalonate (MVA) pathway, which provides fundamental precursors for isoprenoid biosynthesis, such as isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>(2E)-3-methyl-5-phosphooxypent-2-enoate + H(+) = isopentenyl phosphate + CO2</text>
            <dbReference type="Rhea" id="RHEA:78971"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:65078"/>
            <dbReference type="ChEBI" id="CHEBI:229665"/>
            <dbReference type="EC" id="4.1.1.126"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="4">
            <dbReference type="Rhea" id="RHEA:78972"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>prenylated FMN</name>
            <dbReference type="ChEBI" id="CHEBI:87746"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via mevalonate pathway.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the UbiD family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.126" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350132.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD49"/>
    <dbReference type="STRING" id="444157.Tneu_0773"/>
    <dbReference type="GeneID" id="6164295"/>
    <dbReference type="KEGG" id="tne:Tneu_0773"/>
    <dbReference type="eggNOG" id="arCOG01671">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023348_4_1_2"/>
    <dbReference type="OrthoDB" id="8480at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1670.10:FF:000003">
        <property type="entry name" value="Phenolic acid decarboxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1670.10">
        <property type="entry name" value="UbiD C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002830">
        <property type="entry name" value="UbiD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049381">
        <property type="entry name" value="UbiD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049383">
        <property type="entry name" value="UbiD-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048304">
        <property type="entry name" value="UbiD_Rift_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00148">
        <property type="entry name" value="UbiD family decarboxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30108">
        <property type="entry name" value="3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30108:SF17">
        <property type="entry name" value="FERULIC ACID DECARBOXYLASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01977">
        <property type="entry name" value="UbiD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20696">
        <property type="entry name" value="UbiD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20695">
        <property type="entry name" value="UbiD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50475">
        <property type="entry name" value="FMN-binding split barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143968">
        <property type="entry name" value="UbiD C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3-octaprenyl-4-hydroxybenzoate carboxy-lyase-like N-terminal" evidence="10">
        <location>
            <begin position="9"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="3-octaprenyl-4-hydroxybenzoate carboxy-lyase-like Rift-related" evidence="9">
        <location>
            <begin position="121"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="domain" description="3-octaprenyl-4-hydroxybenzoate carboxy-lyase-like C-terminal" evidence="11">
        <location>
            <begin position="316"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00049054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00049583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00049727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00049754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF20695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF20696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="477" mass="52282" checksum="A4C6ADA0FBF5FC18" modified="2008-05-20" version="1">MFSDLREFLSALEERGWLRRVSDPLSPELEIPEVLRRVMYGGGPAVLFESVRGFPGWRVAGNLFGSLDRVKLALGVERLEDVGRRLVEPFAAPPPLSLLDKFKAAAGLFELGRYAPRVVRGGPVREVVEEPNLLSIPAFKSWPGDAGRYITYGVLVTRDVRGVYNLGVYRIQILGEREAVVHAQIHKRAADLFGSTRGCVDAAIVVGGDPAFLLSGMMPTPYPLDEYLFAGVLRGGGLEVTKGVATDLHIPARAEAVVEGCVDVGDLRREGPFGDHYGVYDRGGLYPVFKAKALLRREDPIYYGTVVGRPPLEDAYMGKAVERVFLPVLQFLMPEVVDLNLPMYGLFQGVAIVSIRKRYPGQGKKVMFALWGLGHMLSLTKVVVVVDHDVDVHDLNEVVFAIAQRVDPQRDVVVVQGAHVDVLDTGSPVPGYGSKLGIDATRKLPEEYGGMPWPEEVAPDPGVAARVEEVVRRLLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD50</accession>
    <name>B1YD50_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Rubrerythrin diiron-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0774</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endomembrane system</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350133.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD50"/>
    <dbReference type="STRING" id="444157.Tneu_0774"/>
    <dbReference type="GeneID" id="6164614"/>
    <dbReference type="KEGG" id="tne:Tneu_0774"/>
    <dbReference type="eggNOG" id="arCOG01096">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065373_1_0_2"/>
    <dbReference type="OrthoDB" id="42847at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0012505">
        <property type="term" value="C:endomembrane system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005384">
        <property type="term" value="F:manganese ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030026">
        <property type="term" value="P:intracellular manganese ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02431">
        <property type="entry name" value="Ferritin_CCC1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01044">
        <property type="entry name" value="Ferritin_CCC1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008217">
        <property type="entry name" value="Ccc1_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039376">
        <property type="entry name" value="Ferritin_CCC1_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01988">
        <property type="entry name" value="VIT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="Ferritin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="70"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="172"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="207"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="234"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="265"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="8">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="297" mass="32460" checksum="0500327B7E25CB73" modified="2008-05-20" version="1">MEVDSSLYRIAREAALDEYKEYVVYSALARVERNERRRGVLEALAAAELDHFRFWSRIAGVRPPVWRTRLYALFMVLLRFVFGVTFVAKLLERGEVEAVARYKSLLGVVRGEDLEALRRIIRDGEEHEVALVEQIDETIVKYMGSLVLGLADAVIEITGAHAGTLGTTNSTVVAGVIGLIVGIGAAISMASASYLQTRHEVGKSPAVAALVTGVGYIAAVSLMSLPYFLTHDVYHAFAASIAVGVLLSFMLTFQGSVYTGRDFKYEFLQTVGLLLGTAALTYMLGEWLGGLFGVRVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD87</accession>
    <name>B1YD87_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF2175 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0812</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350170.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD87"/>
    <dbReference type="STRING" id="444157.Tneu_0812"/>
    <dbReference type="GeneID" id="6164451"/>
    <dbReference type="KEGG" id="tne:Tneu_0812"/>
    <dbReference type="eggNOG" id="arCOG00317">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2177981_0_0_2"/>
    <dbReference type="OrthoDB" id="57156at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018686">
        <property type="entry name" value="DUF2175"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09943">
        <property type="entry name" value="DUF2175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="103" mass="11896" checksum="86369E87D1E8473A" modified="2008-05-20" version="1">MRKRWRCAICGDEIVEGQLFTFYSKGAVHWECWEREISPKVYRDVDLAAILRLDHYLHVGIVLSKELEHLAQGEEARRKITEVRKQLEALAAKLTAEVASKTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD97</accession>
    <name>B1YD97_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Transposase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0823</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the transposase 35 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD97"/>
    <dbReference type="STRING" id="444157.Tneu_0823"/>
    <dbReference type="KEGG" id="tne:Tneu_0823"/>
    <dbReference type="eggNOG" id="arCOG00683">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040997_1_0_2"/>
    <dbReference type="OrthoDB" id="21365at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032196">
        <property type="term" value="P:transposition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010095">
        <property type="entry name" value="Cas12f1-like_TNB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001959">
        <property type="entry name" value="Transposase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040570">
        <property type="entry name" value="guided_TnpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07282">
        <property type="entry name" value="Cas12f1-like_TNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01385">
        <property type="entry name" value="OrfB_IS605"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0815">Transposition</keyword>
    <feature type="domain" description="Probable transposase IS891/IS1136/IS1341" evidence="6">
        <location>
            <begin position="204"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="Cas12f1-like TNB" evidence="7">
        <location>
            <begin position="333"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="416"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF07282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="10">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="440" mass="50703" checksum="A426D7C5096049C6" modified="2008-05-20" version="1">MPPTRTVRLRLLPTTPQERKLHRLANTAAKAWNEVNYLRRRQFFAKQGVDLRGTYNEIYNRYRRILAPAALQQILNKNNEAWLGFFALLAKLNAGELPPHVKKVSPPGYWKDRLLGRRVKRLVVRSDRYYVEPVNGGEGYIVLKDFGMRVRYAGRIKWSGKQGRLEIVYERGRWFAYLTVEVGAQPPAGNPKGYVRGTYDRIQIKQPKGDKKAFIDIGINNLFAAVIEGSDRAILIKGTPLKAEYFWWKRQKALYQGVRDVRRNLGLPWQSWHRRYLRALWRMRERLRHYRNTAVRGLAEVLWESGVSEVYVGYPEDIAHDQQNEYVVNVWGYKKLVQRLTEVLAEYGIKLYAADEHSTSKTCSICGEIHENGRVHRGLYVCKRFNVALNADINAARNIAANLGFKTPAPKKIEAYYPTSNGLTPKRGNGRDPHSAAPAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDB0</accession>
    <name>B1YDB0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0836</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350193.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDB0"/>
    <dbReference type="STRING" id="444157.Tneu_0836"/>
    <dbReference type="GeneID" id="6164435"/>
    <dbReference type="KEGG" id="tne:Tneu_0836"/>
    <dbReference type="eggNOG" id="arCOG07484">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_996118_0_0_2"/>
    <dbReference type="OrthoDB" id="29103at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="253"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="279" mass="30548" checksum="DEC19C09ACF926B4" modified="2008-05-20" version="1">MRTTALLLLAALLATAGYIDRASISLRQCLCMAPQWLYLDVYAHVWGPPADIKLYWYDGGWRGPCDVGRGVEAYNICSVPYGASAVALALYEGGREVDRIEVWGVKPGNYTCSAAPDLRVLNRTTSAYPPLVVVTLRSTAMGTLAVYFQTANFTAARALSIRGLNPCDDYVVKLYYYGVSTPWRIRAEGNYTPVATVTHTATVTATVTTPVTVTYTTAYTSTATATVTARETATVTQVYTVTEYVREVDPRSVFLAFLGVGMLALALIFFILADRRRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDC7</accession>
    <name>B1YDC7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pyruvate ferredoxin/flavodoxin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0853</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350210.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDC7"/>
    <dbReference type="STRING" id="444157.Tneu_0853"/>
    <dbReference type="GeneID" id="6165143"/>
    <dbReference type="KEGG" id="tne:Tneu_0853"/>
    <dbReference type="eggNOG" id="arCOG01602">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_087284_1_0_2"/>
    <dbReference type="OrthoDB" id="53326at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016903">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="entry name" value="Pyruvate-ferredoxin oxidoreductase, PFOR, domain III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052198">
        <property type="entry name" value="IorB_Oxidoreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43854">
        <property type="entry name" value="INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43854:SF1">
        <property type="entry name" value="INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="Pyruvate-ferredoxin oxidoreductase, PFOR, domain III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyruvate/ketoisovalerate oxidoreductase catalytic" evidence="2">
        <location>
            <begin position="11"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="179" mass="19167" checksum="2673633796F5CFFD" modified="2008-05-20" version="1">MATSVVFVGVGGQGVVTLARWVGEAALSAGYDVRIAEIHGVSQRGGSVEVHLRFGEVYAAVVEEGGADYVVALEALEALRAYRYLKEGGLLVVNRRVIQPPGRWFNVEEVVEAIKRSGARSCVVPCFDVALELGSPVYENAVMLGILARLLGLPQPPGLDGRNREAFQRGFNLGASCRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDF6</accession>
    <name>B1YDF6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0882</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350239.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDF6"/>
    <dbReference type="STRING" id="444157.Tneu_0882"/>
    <dbReference type="GeneID" id="6166278"/>
    <dbReference type="KEGG" id="tne:Tneu_0882"/>
    <dbReference type="eggNOG" id="arCOG05696">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2091428_0_0_2"/>
    <dbReference type="OrthoDB" id="25061at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="112" mass="13067" checksum="F3A915D411C88C77" modified="2008-05-20" version="1">MDVVKTMRYKFVRYCVNRAYASMDLSGVPAEVLNVFDDVVNQIRDLERYFTSVDAIARALRADLPERLKTLKERDPKLAQTFMKKVVENCQELEEVADSKIMEYLQEILKSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDK9</accession>
    <name>B1YDK9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0935</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350292.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDK9"/>
    <dbReference type="STRING" id="444157.Tneu_0935"/>
    <dbReference type="GeneID" id="6164606"/>
    <dbReference type="KEGG" id="tne:Tneu_0935"/>
    <dbReference type="eggNOG" id="arCOG07065">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_184186_0_0_2"/>
    <dbReference type="OrthoDB" id="28029at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="77" mass="8637" checksum="20BA930EC5301A19" modified="2008-05-20" version="1">MSLLLLFKGDVPQHWRSLKADGLEVRGLGEGLPPLEGRFVVVVGDRELAERLGVAYMDEAEAEDFYRFLIQRLSSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="39" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDL6</accession>
    <name>B1YDL6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0943</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350299.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDL6"/>
    <dbReference type="STRING" id="444157.Tneu_0943"/>
    <dbReference type="GeneID" id="6164480"/>
    <dbReference type="KEGG" id="tne:Tneu_0943"/>
    <dbReference type="eggNOG" id="arCOG07065">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2766261_0_0_2"/>
    <dbReference type="OrthoDB" id="377121at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="69" mass="7873" checksum="62B73C7A1DC5A604" modified="2008-05-20" version="1">MDVVFVGKIPRRYVEALKRFGFRVSDRIPPEGSAVVVIYGDCEEAAKRGYACFTQEELDGFVKFLFSYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDN7</accession>
    <name>B1YDN7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0965</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350320.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDN7"/>
    <dbReference type="STRING" id="444157.Tneu_0965"/>
    <dbReference type="GeneID" id="6164458"/>
    <dbReference type="KEGG" id="tne:Tneu_0965"/>
    <dbReference type="eggNOG" id="arCOG00166">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016047_14_2_2"/>
    <dbReference type="OrthoDB" id="94632at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049783">
        <property type="entry name" value="ABC_perm_TupB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF038017">
        <property type="entry name" value="ABC_perm1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43632">
        <property type="entry name" value="PERMEASE COMPONENT OF TUNGSTATE ABC TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43632:SF1">
        <property type="entry name" value="PERMEASE COMPONENT OF TUNGSTATE ABC TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="MetI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="48"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="80"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="186"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="9"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="214" mass="22007" checksum="18439EDFCEE25E1A" modified="2008-05-20" version="1">MSAELAGIVLNSVYVSAVPALVSAAVGTPAALWLHTRGGRLAEALKALFNGLVGIPTVLLGLLLYLLLARSGPLGGLGILYTLEAVVVGHTLLVLPLYLSYAMTALDGVDPRVRELAEMFGLGRAALLKIYVREAAGGLAAAAAAAYGRALGELGIALMLGGDIRYRTRVLTTAVAHETMLGNWDAAIQLGAVLLAMAVAVSAAVTALGFRYRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDR1</accession>
    <name>B1YDR1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF3782 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0991</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDR1"/>
    <dbReference type="STRING" id="444157.Tneu_0991"/>
    <dbReference type="KEGG" id="tne:Tneu_0991"/>
    <dbReference type="eggNOG" id="arCOG01423">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064028_2_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024271">
        <property type="entry name" value="DUF3782"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012431">
        <property type="entry name" value="PDDEXK_10"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34314">
        <property type="entry name" value="CRENARCHAEAL PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34314:SF6">
        <property type="entry name" value="DUF3782 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12644">
        <property type="entry name" value="DUF3782"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07788">
        <property type="entry name" value="PDDEXK_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="61"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="241" mass="27662" checksum="B7271BB2D5B24AEE" modified="2008-05-20" version="1">MELERRGFVFEFRLAQLDVGLDLKRELLRLLREDEEFRYAVVGLLGIADLRTSLDSLIKAVGELRDVVAKHSEEIDKLRSAVEELRKAVEALTEDVKRHSEAIHAMQNSIERLTSSVTALGYRHGLFTEEAFRESIRYLLGDLLKIYQIKRWTYYDSEGFVFGRPSVIDVDVLIRDGEHILVGYKAGIDRGDVAELYREGLLYERVNKVRPRLLIVGPAIRKRALELARELGVEVRAPEVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDR9</accession>
    <name>B1YDR9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Gene product 88 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1000</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350352.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDR9"/>
    <dbReference type="STRING" id="444157.Tneu_1000"/>
    <dbReference type="GeneID" id="6164810"/>
    <dbReference type="KEGG" id="tne:Tneu_1000"/>
    <dbReference type="eggNOG" id="arCOG07040">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_904945_0_0_2"/>
    <dbReference type="OrthoDB" id="23339at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020290">
        <property type="entry name" value="Gp88"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17338">
        <property type="entry name" value="GP88"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gene product 88" evidence="1">
        <location>
            <begin position="64"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="301" mass="34878" checksum="DF50B139E25E3DF3" modified="2008-05-20" version="1">MLTLFDRRIGGRTLRELAWELYRGGAYRPPRSELELAQLVQIQRRISGGVPVPKMPYVPGNRKVGRIWTFDLPPVLTCPYATFCGRPGSAGLYRGRGLVCYDINIARYNPLHLLREYINFIHVVREGYSWLRDWTRFVVDYRGARIIRFHVGGDVFSDWYWGYLKKLASDFLHVTFYLYTRSFPIVAASPERPPNLVVLMSLDGANYKAYEKYGAYFDHITYLAAGEDARGQIPAIEALAKWAAQNGKRLIIFLEHRRLPQLRQALEKYSQYICPNELGVNTTCEKCRRCFAPPRDRHFTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDS6</accession>
    <name>B1YDS6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Extracellular solute-binding protein family 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1007</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDS6"/>
    <dbReference type="STRING" id="444157.Tneu_1007"/>
    <dbReference type="KEGG" id="tne:Tneu_1007"/>
    <dbReference type="eggNOG" id="arCOG00221">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032622_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.10">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30006:SF24">
        <property type="entry name" value="SLL0237 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30006">
        <property type="entry name" value="THIAMINE-BINDING PERIPLASMIC PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="17"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="2">
        <location>
            <begin position="29"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="485" mass="52439" checksum="2A6C1F40EA208594" modified="2008-05-20" version="1">MVAVAIIAALFAAQQQQAPAASPPPPTASTPATGTVTSTPTTTAASPTPTATSPEVCTTLVVITRHPTDILDAARALFLQSDVAKRYGVRDVVFKPVPAAQWRALIQAGQADVAWGGGPTLFDSLYKDGLLLPLEGDEVKSALAQIPKTIAGMPMMRVGPDGKVYWVAWAVSSFGITINTQVLKDLGLPEPRSWADLASFEYGKAVLRGTPAAGLSSLTKSTSNTRIAEIILQAYGWDEGWRVITLTAANGRIYGGSEAVRDAVIAGEIGAGWTIDFFGYTAQLQNPATRYVVPNDTSVNGDPIAVVKGTRCRQAAEAFVAWVITQGQVVVFDPKVNRMPVNPSAFDTPEGKKRADLKAVYDYMLHLRTINFNDTLALATENVVMYYFDAAVTDNAQLLQDAWAKLVKAYLGGRIDRAKAVELARRLGEPVTFKDPDTGQMVKLTLEYAMKINDKLKDPAYRDKIYAAWREAAREKYREVASQIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDU3</accession>
    <name>B1YDU3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1025</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDU3"/>
    <dbReference type="STRING" id="444157.Tneu_1025"/>
    <dbReference type="KEGG" id="tne:Tneu_1025"/>
    <dbReference type="eggNOG" id="arCOG03166">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041137_3_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34704">
        <property type="entry name" value="ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34704:SF2">
        <property type="entry name" value="ATPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="454" mass="51794" checksum="8387FEE557C0637D" modified="2008-05-20" version="1">MSVIIMDVIRIYGRERELSLLRRLREPFLAVVYGRRRIGKTALVLKFLEGRPHLYLFVNPRKPPRLLLEEYGEAVKRAAGLPPYVRFQSWEELFDALFSLRGYVVAFDEFQWFLEAAPEVPYILQKMWDVRREKPSFIVTGSVVGMVKRLVAESGSPLFGRADLVLELGELPPSAVFQWLGDMGVSGEEALRLYLLFGGVPYYYRLAERWGVRTAEEAVRALVAGEGAPLRDEVERVLAESLGGQYRTHLAILDAVAGGATKLEQIASHAGVKATSLPPYMHELTDVLHVLERRRGRRTYYELRDRFYAFWLRAIYRRRETTPEHRLADEAAAALEDFYPWAFEALVRDVIPHLYPVPKATREVVAVRSGGRRVHVEVDAFARNEEERLAVLAEAKWGRADPAQILPKLRAAAQALVPPGWRVKYAIFAREFARGAEEADLIDLQTLIQKLKNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDV7</accession>
    <name>B1YDV7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger, SWIM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1039</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350390.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDV7"/>
    <dbReference type="STRING" id="444157.Tneu_1039"/>
    <dbReference type="GeneID" id="6164851"/>
    <dbReference type="KEGG" id="tne:Tneu_1039"/>
    <dbReference type="eggNOG" id="arCOG05500">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_120796_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SWIM-type" evidence="2">
        <location>
            <begin position="23"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="135" mass="15115" checksum="B8CA9606F5843700" modified="2008-05-20" version="1">MAEAGGLYLVAGRPELGDWKPQYQVWYSSAEGRWLCSCGRRSCTHIAAVQLYIAYRRALDSGLYIAEAEVECPGRLEADGLLYARPTPRGYRILVISRRRLIRVRCGGHLLLELYGERVPAAAAEDAARRYGGQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDY4</accession>
    <name>B1YDY4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide TPR_4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1066</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350416.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDY4"/>
    <dbReference type="STRING" id="444157.Tneu_1066"/>
    <dbReference type="GeneID" id="6166311"/>
    <dbReference type="KEGG" id="tne:Tneu_1066"/>
    <dbReference type="eggNOG" id="arCOG09850">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_465132_0_0_2"/>
    <dbReference type="OrthoDB" id="26549at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="entry name" value="Tetratricopeptide repeat domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="TPR-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="587" mass="65087" checksum="BAAC528EDC3C72BA" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="34" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE15</accession>
    <name>B1YE15_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1097</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE15"/>
    <dbReference type="STRING" id="444157.Tneu_1097"/>
    <dbReference type="KEGG" id="tne:Tneu_1097"/>
    <dbReference type="HOGENOM" id="CLU_1665567_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="158" mass="18084" checksum="9E4A1FC43860B0F9" modified="2008-05-20" version="1">MFIFYFLQRIMYTITTYEKRRTYTVVAYVGTAVLVRRGVPKKLVEQVLRGAAPRKRWLGGRAASYKSEAGAVLRLFPLDYFAQFCTDGLRLPYVDELMKAAYKSGLLDLPVRPGTIKVWIEKGLDGVADEDEDIDPRCFIRRYGKYHLATPPWCCTGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE18</accession>
    <name>B1YE18_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC-2 type transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1100</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350450.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE18"/>
    <dbReference type="STRING" id="444157.Tneu_1100"/>
    <dbReference type="GeneID" id="6165571"/>
    <dbReference type="KEGG" id="tne:Tneu_1100"/>
    <dbReference type="eggNOG" id="arCOG01468">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1127123_0_0_2"/>
    <dbReference type="OrthoDB" id="147058at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC2_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051784">
        <property type="entry name" value="Nod_factor_ABC_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43229:SF3">
        <property type="entry name" value="ABC-TYPE MULTIDRUG TRANSPORT SYSTEM, PERMEASE COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43229">
        <property type="entry name" value="NODULATION PROTEIN J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="108"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="132"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="220"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="ABC-2 type transporter transmembrane" evidence="6">
        <location>
            <begin position="58"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="246" mass="26105" checksum="FECE5F3B2ACA0835" modified="2008-05-20" version="1">MRLGNVLVIAKYMVLATRGWHITLAWFMVPYPLLWLWLLKLVGYPTYVEHFVVGTVLSTAFQMPYVVTAQDVASMKHWSRQYSLLLANGADHLEIALSYLAQSTATTAGASVLLLAASAAVAGVAYGPAQVAAAAGASALISAASCLLGYAQAIGIRNPALSQQMAQIVPLLLILVAPVYYPADLLPEPLRAASHLLPTTYMAYALRGALALNPEEAARGAAGILAYAAASALVTIYAVRREQRHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="92" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE51</accession>
    <name>B1YE51_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">CRISPR-associated helicase Cas3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1134</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350483.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE51"/>
    <dbReference type="STRING" id="444157.Tneu_1134"/>
    <dbReference type="GeneID" id="6165757"/>
    <dbReference type="KEGG" id="tne:Tneu_1134"/>
    <dbReference type="eggNOG" id="arCOG01444">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_491460_0_0_2"/>
    <dbReference type="OrthoDB" id="43851at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140097">
        <property type="term" value="F:catalytic activity, acting on DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054712">
        <property type="entry name" value="Cas3-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050079">
        <property type="entry name" value="DEAD_box_RNA_helicase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006474">
        <property type="entry name" value="Helicase_Cas3_CRISPR-ass_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01587">
        <property type="entry name" value="cas3_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47959">
        <property type="entry name" value="ATP-DEPENDENT RNA HELICASE RHLE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47959:SF16">
        <property type="entry name" value="CRISPR-ASSOCIATED NUCLEASE_HELICASE CAS3-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22590">
        <property type="entry name" value="Cas3-like_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="6">
        <location>
            <begin position="41"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="7">
        <location>
            <begin position="250"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="566" mass="63131" checksum="71D40F80CDFAC210" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE53</accession>
    <name>B1YE53_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">CRISPR-associated autoregulator, DevR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1136</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE53"/>
    <dbReference type="STRING" id="444157.Tneu_1136"/>
    <dbReference type="KEGG" id="tne:Tneu_1136"/>
    <dbReference type="eggNOG" id="arCOG03617">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054331_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051607">
        <property type="term" value="P:defense response to virus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002764">
        <property type="entry name" value="Cas7/Cst2/DevR_sub_I-a/Apern"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010154">
        <property type="entry name" value="CRISPR-assoc_Cas7/Cst2/DevR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052681">
        <property type="entry name" value="CRISPR-Cas7/Cst2/DevR"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01875">
        <property type="entry name" value="cas_MJ0381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02583">
        <property type="entry name" value="DevR_archaea"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37459">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37459:SF1">
        <property type="entry name" value="CRISPR-ASSOCIATED PROTEIN CAS7_CST2_DEVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01905">
        <property type="entry name" value="DevR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0051">Antiviral defense</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00025626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="327" mass="35659" checksum="87FB29EBF4E0F2A0" modified="2008-05-20" version="1">MAPPYVRAAGRFEAQLSVLTGAGNMGNYNMHAVAKVVHGGKAYEVPVLTGNALKHWHSVYLAEVYQDLGGKQLNEFCMKGVGLRGKNLGGDDASSEAEAIKDLCNDLHGFLLPDKQIKRDSLVRVSFAVPVLEEKNLEAASKFAVVHNRVDPFKRTQQVKSKEEQEGTEMMVFKQEYSSAVYGFAVAMDLGLSGVPLYQEGKSDVDDKERELRIKSALVALLRLFNGVGSKQARALPIARLRELVIAISDSPIPNLVHGAYPDYVARSAELLTAYLRAVGKKGVVLCYGVDCPRSNDVLECKKADTLDALFQEVLGRALPGGQPARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8K7</accession>
    <name>B1Y8K7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1157</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350505.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8K7"/>
    <dbReference type="STRING" id="444157.Tneu_1157"/>
    <dbReference type="GeneID" id="6166208"/>
    <dbReference type="KEGG" id="tne:Tneu_1157"/>
    <dbReference type="HOGENOM" id="CLU_1003324_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="277" mass="31761" checksum="FCB25396D9A89548" modified="2008-05-20" version="1">MRLLYLDAFYYYAPVRRVLDLRAVLRERGLVIDRLLHTRFSSATLLRDQINSVLRSDKIGEILTKLFSVVLSGKKRKTILDTENLAVVLDDEKTHLIEFLIFIAKYIDLERQNLNIDELSDTLNRQVCPEGTAISVDKESAMVIRMLREPKYQVLFNTVIGRYLEKIYDSFAIYTTCRVCKLLGLNPPDCLTYAETFREDPAIGGLRWEAWCPQCRNHLDDVAKAEILQQYAISNRGDKIYVATVGTIKPSRSGECFTCLVNHLSSLVNNIEHITHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="96" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8M7</accession>
    <name>B1Y8M7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Anthranilate phosphoribosyltransferase</fullName>
            <ecNumber evidence="4">2.4.2.18</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">trpD</name>
        <name evidence="7" type="ordered locus">Tneu_1177</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the transfer of the phosphoribosyl group of 5-phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>N-(5-phospho-beta-D-ribosyl)anthranilate + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate</text>
            <dbReference type="Rhea" id="RHEA:11768"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:18277"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="4">Binds 2 magnesium ions per monomer.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the anthranilate phosphoribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.18" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350525.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8M7"/>
    <dbReference type="STRING" id="444157.Tneu_1177"/>
    <dbReference type="GeneID" id="6165114"/>
    <dbReference type="KEGG" id="tne:Tneu_1177"/>
    <dbReference type="eggNOG" id="arCOG02012">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034315_2_1_2"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00041"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004048">
        <property type="term" value="F:anthranilate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:L-tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1030.10">
        <property type="entry name" value="Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.970.10">
        <property type="entry name" value="Transferase, Pyrimidine Nucleoside Phosphorylase, Chain C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00211">
        <property type="entry name" value="TrpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005940">
        <property type="entry name" value="Anthranilate_Pribosyl_Tfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000312">
        <property type="entry name" value="Glycosyl_Trfase_fam3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017459">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036320">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035902">
        <property type="entry name" value="Nuc_phospho_transferase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01245">
        <property type="entry name" value="trpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43285">
        <property type="entry name" value="ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43285:SF2">
        <property type="entry name" value="ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02885">
        <property type="entry name" value="Glycos_trans_3N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00591">
        <property type="entry name" value="Glycos_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52418">
        <property type="entry name" value="Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47648">
        <property type="entry name" value="Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="2 4 7" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="Glycosyl transferase family 3 N-terminal" evidence="6">
        <location>
            <begin position="10"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyl transferase family 3" evidence="5">
        <location>
            <begin position="79"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>anthranilate</name>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="88"/>
            <end position="89"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="95"/>
            <end position="98"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="113"/>
            <end position="121"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>anthranilate</name>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>anthranilate</name>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="336" mass="35287" checksum="843FEE4727A4A84F" modified="2008-05-20" version="1">MEGYGFGVADLLKRLASGGSLNAEEAYALSREILSGGLNDVAVAAALTAMRCRGETAEEVAGFVKSAREAAVKVPLRVEAIDTAGTGGDGAGTINLSTLAAVVAAAAGARVLKHGNRSASGFFGSADFMEAVGYNLEVGPEKAADMVEKIGFAFVFAPRYHPAFARVAPVRRQLPFRTVFNIVGPLANPGLVKRQLIGVSERRLLDVVGGVASLLLDRALVVYGSGVDEVSTEGPTEVVEVRGGRTERYVLEPEDFGVGKTPLPRASTREEAVGLALAGLRGERREAEIAIAVNAAAALYVAEVVRDFRDGFELAVKAIREGAAYRKLREAVEASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8T5</accession>
    <name>B1Y8T5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1237</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350583.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8T5"/>
    <dbReference type="STRING" id="444157.Tneu_1237"/>
    <dbReference type="GeneID" id="6165996"/>
    <dbReference type="KEGG" id="tne:Tneu_1237"/>
    <dbReference type="eggNOG" id="arCOG01275">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_0_1_2"/>
    <dbReference type="OrthoDB" id="29249at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482:SF17">
        <property type="entry name" value="ABC TRANSPORTER ATP-BINDING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="30"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="54"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="79"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="110"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="201"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="242"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="273"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="301" mass="31445" checksum="89958573A215B76C" modified="2008-05-20" version="1">MRDGYKALLFLAAYGLAYILAPGAYLRYEVVYFGAVSLAVLGVTKLLDAGLVNFGYGMYVAAGAYAAGLLYKHLGVSDVAAGVALAAAAGAAFGYAVGKATARFRGIFYALLNLSVSMVLYGVLVKFYTVTGGSDGITIPTYLLFGFPAGTDAIAGLTAALAATGLYMRSRYLRSALYYNALGLRENELRMRALAVSPEAAVVKLTVFSAVFGSVSGALLAYLTNHVSPDLSFWSESSIMVIGGLAGGFISPMYGFLAGALVLRILDILASYYVYELVVGVGLMLIFALALARSYVGGARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8U3</accession>
    <name>B1Y8U3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATP binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350591.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8U3"/>
    <dbReference type="STRING" id="444157.Tneu_1245"/>
    <dbReference type="GeneID" id="6165910"/>
    <dbReference type="KEGG" id="tne:Tneu_1245"/>
    <dbReference type="eggNOG" id="arCOG00035">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010289_0_2_2"/>
    <dbReference type="OrthoDB" id="372052at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017178">
        <property type="term" value="F:diphthine-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017183">
        <property type="term" value="P:protein histidyl modification to diphthamide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01994">
        <property type="entry name" value="AANH_PF0828-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.620:FF:000145">
        <property type="entry name" value="ATP-binding domain containing protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1490.10">
        <property type="entry name" value="putative n-type atp pyrophosphatase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002761">
        <property type="entry name" value="Diphthami_syn_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030662">
        <property type="entry name" value="DPH6/MJ0570"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022427">
        <property type="entry name" value="MJ0570_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03679">
        <property type="entry name" value="arCOG00187"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00290">
        <property type="entry name" value="MJ0570_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12196:SF2">
        <property type="entry name" value="DIPHTHINE--AMMONIA LIGASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12196">
        <property type="entry name" value="DOMAIN OF UNKNOWN FUNCTION 71 DUF71 -CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01902">
        <property type="entry name" value="Diphthami_syn_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039123">
        <property type="entry name" value="Diphthamide_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Diphthamide synthase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="235" mass="26317" checksum="CC94A760231CF5C2" modified="2008-05-20" version="1">MRVAVLYTGGKDSHYSMLKAMEEGHQVVCLVTAASRRSDSYMFHTVNIRWSLLHGEAMGIPQYLVEVSGEKEQEVEELYQALRPIAERHGVEGIVTGAVASRYQKARVDALAERLGVKHIAPLWGRDQAEVLREEAARLRFVITAAMAMGLGPRHLGLTVTPEVAEEIIALSGRYGFSPVGEGGEYETYVVESPLFSIEILEGEPHWHPAGWGYYLIKNARVKRYKEEILGRQPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8V8</accession>
    <name>B1Y8V8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">FAD dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1260</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DadA oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350606.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8V8"/>
    <dbReference type="STRING" id="444157.Tneu_1260"/>
    <dbReference type="GeneID" id="6165849"/>
    <dbReference type="KEGG" id="tne:Tneu_1260"/>
    <dbReference type="eggNOG" id="arCOG00758">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_753592_0_0_2"/>
    <dbReference type="OrthoDB" id="168391at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.9.10">
        <property type="entry name" value="D-Amino Acid Oxidase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053679">
        <property type="entry name" value="DadA_oxidoreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040813">
        <property type="entry name" value="pro_dh_Thprot"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13847:SF286">
        <property type="entry name" value="D-AMINO ACID DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13847">
        <property type="entry name" value="SARCOSINE DEHYDROGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00411">
        <property type="entry name" value="PNDRDTASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51971">
        <property type="entry name" value="Nucleotide-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD dependent oxidoreductase" evidence="5">
        <location>
            <begin position="2"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="363" mass="40063" checksum="DE313C87394F1B36" modified="2008-05-20" version="1">MKVAVVGGGIIGLFTAYHLRQQGADVVIIDQGEPGGWSKAAAGILEFTRFVINRINVRSYPRRYLSMALRGDARIKTWDWGWISAYLKAWGREPTQDMWEAIKTLGEYSRRQYRALAEAENDFAYSEEPLYEVGIDVAAALEEAKRDPLSPKVEAGRCCGREALAYLDAARLSTEDFVARMLRELRGVQTVRRRAQEVAGREVWLEGGDVVGADAVVVAAGYWARKFGIPVAPFKGYGFRTTAKAQNMFIEMAKGVAVVPLPKWTKVTGRFDLDGTEDHSPSARVLQRARQILGNFEVLEMSVGYRPCTPDGFPVVDKVGEVVVATGACRLGWTYGPALGKLAADLALGKPGIEALTARRFRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8W5</accession>
    <name>B1Y8W5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phosphoribosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_1267</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350613.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8W5"/>
    <dbReference type="STRING" id="444157.Tneu_1267"/>
    <dbReference type="GeneID" id="6165815"/>
    <dbReference type="KEGG" id="tne:Tneu_1267"/>
    <dbReference type="eggNOG" id="arCOG00031">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086256_1_0_2"/>
    <dbReference type="OrthoDB" id="31493at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006166">
        <property type="term" value="P:purine ribonucleoside salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRTase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050118">
        <property type="entry name" value="Pur/Pyrimidine_PRTase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006328">
        <property type="entry name" value="PRK08558.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43864">
        <property type="entry name" value="HYPOXANTHINE/GUANINE PHOSPHORIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43864:SF1">
        <property type="entry name" value="XANTHINE PHOSPHORIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="lambda repressor-like DNA-binding domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="PRTase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="2" id="KW-0660">Purine salvage</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="4">
        <location>
            <begin position="17"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="domain" description="Phosphoribosyltransferase" evidence="3">
        <location>
            <begin position="113"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB40194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="230" mass="25563" checksum="1E7E1581FAE39E21" modified="2008-05-20" version="1">MRRVEGLRIQLDAVSYLRSVKKLLGVTYRDLSPLLDLPESVLSRYVTGDMLPSVETAQEILAKLSSAYPIEAVVKAKIRLYDSYVDMSFVNLPEFWRLYEIYLSRRFPGLEVEVVLTAAADGIPLAVAAASRLEAALVVAKQYREPGVENYEFTYLREGRPVTLYIPSAYVKRGDRVFIVDDIARTGKTLKALAGLCDKAGARVVGASVLVARQGFNIDVGFPVDVVYTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Y1</accession>
    <name>B1Y8Y1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">JAB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1283</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350629.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Y1"/>
    <dbReference type="STRING" id="444157.Tneu_1283"/>
    <dbReference type="GeneID" id="6165907"/>
    <dbReference type="KEGG" id="tne:Tneu_1283"/>
    <dbReference type="eggNOG" id="arCOG01138">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_116765_4_2_2"/>
    <dbReference type="OrthoDB" id="10589at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008235">
        <property type="term" value="F:metalloexopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08070">
        <property type="entry name" value="MPN_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.10">
        <property type="entry name" value="Cytidine Deaminase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028090">
        <property type="entry name" value="JAB_dom_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051929">
        <property type="entry name" value="VirAsm_ModProt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34858">
        <property type="entry name" value="CYSO-CYSTEINE PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34858:SF1">
        <property type="entry name" value="CYSO-CYSTEINE PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14464">
        <property type="entry name" value="Prok-JAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102712">
        <property type="entry name" value="JAB1/MPN domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="JAB" evidence="6">
        <location>
            <begin position="12"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF14464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="121" mass="13825" checksum="1874749D44356F45" modified="2008-05-20" version="1">MKIPPLFFKEAAERCRPEAECAALLFGEGETVKTWRWVRNVLESPTAFRIDPEELYRAVTEAEEAGLALVAIFHTHPGPPVPSPLDIRHMRLWPVVWVISDVYTWETAGWRLSEEGLVKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Z8</accession>
    <name>B1Y8Z8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1300</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350646.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Z8"/>
    <dbReference type="STRING" id="444157.Tneu_1300"/>
    <dbReference type="GeneID" id="6165638"/>
    <dbReference type="KEGG" id="tne:Tneu_1300"/>
    <dbReference type="eggNOG" id="arCOG05552">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2784328_0_0_2"/>
    <dbReference type="OrthoDB" id="25178at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="68" mass="7865" checksum="7B7050CEEA70E0D7" modified="2008-05-20" version="1">MYYLADQRLKVAAERFSADKALRCRTVYQIYKLYKQGLVTQKVGEKAAEILEKECPRELLELVAPTVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y925</accession>
    <name>B1Y925_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1328</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350673.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y925"/>
    <dbReference type="STRING" id="444157.Tneu_1328"/>
    <dbReference type="GeneID" id="6165229"/>
    <dbReference type="KEGG" id="tne:Tneu_1328"/>
    <dbReference type="eggNOG" id="arCOG05557">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1493026_0_0_2"/>
    <dbReference type="OrthoDB" id="29219at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="179" mass="19969" checksum="D5C6E18D54C0A7C9" modified="2008-05-20" version="1">MLSDYIAQKIQEIEEKTYNKLVLVLSITSLTSVMTSGIAVVLNPSLKYLATATLAAGLLISRELAKRGAKKARKLLAAPEKELRVKTYFAKLKDSYNAREFLERLAREPTVEDPLVRRERKAVDAAAPLYSIKHETLKSKLRIVAYATSIAVALPHLIITKDLVITLAVLLILLAWRKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y944</accession>
    <name>B1Y944_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Geranylgeranyl reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1347</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350692.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y944"/>
    <dbReference type="STRING" id="444157.Tneu_1347"/>
    <dbReference type="GeneID" id="6165239"/>
    <dbReference type="KEGG" id="tne:Tneu_1347"/>
    <dbReference type="eggNOG" id="arCOG00570">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024648_0_0_2"/>
    <dbReference type="OrthoDB" id="6062at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016628">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.50.50.60:FF:000546">
        <property type="entry name" value="Geranylgeranyl hydrogenase, putative"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054906">
        <property type="entry name" value="DGGGPL_red"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011777">
        <property type="entry name" value="Geranylgeranyl_Rdtase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050407">
        <property type="entry name" value="Geranylgeranyl_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR054715">
        <property type="entry name" value="GGR_cat"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041080">
        <property type="entry name" value="DGGGPL_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02032">
        <property type="entry name" value="GG-red-SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42685:SF18">
        <property type="entry name" value="DIGERANYLGERANYLGLYCEROPHOSPHOLIPID REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42685">
        <property type="entry name" value="GERANYLGERANYL DIPHOSPHATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12831">
        <property type="entry name" value="FAD_oxidored"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22578">
        <property type="entry name" value="GGR_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00420">
        <property type="entry name" value="RNGMNOXGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="1" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="7" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Digeranylgeranylglycerophospholipid reductase catalytic" evidence="8">
        <location>
            <begin position="180"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF22578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="453" mass="50157" checksum="9B95E7C8FF569C82" modified="2008-05-20" version="1">MVERFDVVVVGAGTAGAFASYLLAKNGFRVALLESKSGQEIGVKTCGDGLGLHHVERISRHITPNPKVFQNKIEGVELISPDEKTRLVIKGEGYVLDRFAWGKWLVEEAVKAGAVLYEGHTATTPLVDNGAVVGVRAVERRTGSPKEFAAKVVVDASGSAAVLRSKLAGWPISEPLHPEDVSHAYREIVYVEEPLDSPQYIKIYLDMVTAPGGYWWIFPRSATMLNVGLGIWGILKQNPRTNYERYILPRFKIKGKYHIGGGFIPTRRPLKSLVGNGIVALGDAAAAVNPIHGGGIGQALLTAELASRAISKAFEAGDFSEKALWEYNLLYMREWGYRQAQLDVLRLMLQTLDNDDLNFGLSRKILNEDEIYHLAAKGTNISIVDKLRVMMQFIGRPALLKKLSTSIQYAKEIGDLYLAYPGERAELERWHSRVVDKYNEFREKIGLGPLPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y955</accession>
    <name>B1Y955_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Acetyl-CoA C-acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1358</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350703.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y955"/>
    <dbReference type="STRING" id="444157.Tneu_1358"/>
    <dbReference type="GeneID" id="6164346"/>
    <dbReference type="KEGG" id="tne:Tneu_1358"/>
    <dbReference type="eggNOG" id="arCOG01278">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035425_4_0_2"/>
    <dbReference type="OrthoDB" id="167534at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00829">
        <property type="entry name" value="SCP-x_thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055140">
        <property type="entry name" value="Thiolase_C_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42870">
        <property type="entry name" value="ACETYL-COA C-ACETYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42870:SF6">
        <property type="entry name" value="ACETYL-COA C-ACYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF22691">
        <property type="entry name" value="Thiolase_C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="Thiolase-like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiolase N-terminal" evidence="2">
        <location>
            <begin position="4"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase C-terminal" evidence="3">
        <location>
            <begin position="236"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF22691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="368" mass="39450" checksum="64AD172C21356936" modified="2008-05-20" version="1">MKDVYIVGAALHPVGRHYGKNIDDMAAEVLEKAIGDAGVDVDAVLVASSTAELAERQQLLGSYILESLGLNKTPAFRVENGDGSGGAAISMAYGLLKSEEYNCVAVVGVDKPNDVLSNQQQDIYAAVVDTYFERYFGVTPLSQAALMAKMYLKKYEYRYEDLAQWALLMHNNGVGNPYAYLRRQVKLEDAVNSELVSEPLRLYDIGPLADGAAAAVLCNNRKDGPRLLSVSASTNSTPFNAREDYDVLYSLRDASQLAFKKAKITPRDIATAEVHDSFSILGVLAVEGLGMAQKGGALAAVKDGALPVNLSGGLKSRGNVLGATGVYQLVEVAWQLLGREFKRVDGSYGVIHSMGGVDRFSTVAVVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y958</accession>
    <name>B1Y958_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DNA polymerase</fullName>
            <ecNumber evidence="8">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Tneu_1361</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="13">
            <text>DNA(n) + a 2'-deoxyribonucleoside 5'-triphosphate = DNA(n+1) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the DNA polymerase type-B family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350706.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y958"/>
    <dbReference type="STRING" id="444157.Tneu_1361"/>
    <dbReference type="GeneID" id="6164550"/>
    <dbReference type="KEGG" id="tne:Tneu_1361"/>
    <dbReference type="eggNOG" id="arCOG15272">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000203_6_0_2"/>
    <dbReference type="OrthoDB" id="323192at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd05783">
        <property type="entry name" value="DNA_polB_B1_exo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.287.690:FF:000011">
        <property type="entry name" value="DNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.132.60">
        <property type="entry name" value="DNA polymerase family B, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.342.10">
        <property type="entry name" value="DNA Polymerase, chain B, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.690">
        <property type="entry name" value="Helix hairpin bin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1600.10">
        <property type="entry name" value="Palm domain of DNA polymerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="entry name" value="Ribonuclease H-like superfamily/Ribonuclease H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006172">
        <property type="entry name" value="DNA-dir_DNA_pol_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017964">
        <property type="entry name" value="DNA-dir_DNA_pol_B_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006133">
        <property type="entry name" value="DNA-dir_DNA_pol_B_exonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006134">
        <property type="entry name" value="DNA-dir_DNA_pol_B_multi_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042087">
        <property type="entry name" value="DNA_pol_B_thumb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023211">
        <property type="entry name" value="DNA_pol_palm_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050240">
        <property type="entry name" value="DNA_pol_type-B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004417">
        <property type="entry name" value="PRK05761.1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10322:SF20">
        <property type="entry name" value="DNA POLYMERASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10322">
        <property type="entry name" value="DNA POLYMERASE CATALYTIC SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00136">
        <property type="entry name" value="DNA_pol_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03104">
        <property type="entry name" value="DNA_pol_B_exo1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00106">
        <property type="entry name" value="DNAPOLB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00486">
        <property type="entry name" value="POLBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="DNA/RNA polymerases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="Ribonuclease H-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00116">
        <property type="entry name" value="DNA_POLYMERASE_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0235">DNA replication</keyword>
    <keyword evidence="6 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="3 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA-directed DNA polymerase family B exonuclease" evidence="10">
        <location>
            <begin position="143"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="domain" description="DNA-directed DNA polymerase family B multifunctional" evidence="9">
        <location>
            <begin position="443"/>
            <end position="812"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00049244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="854" mass="97378" checksum="984F5F87DC22F946" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="80" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y966</accession>
    <name>B1Y966_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Tneu_1369</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="11">Component of the KEOPS complex that consists of Kae1, Bud32, Cgi121 and Pcc1; the whole complex dimerizes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. BUD32 family.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350714.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y966"/>
    <dbReference type="STRING" id="444157.Tneu_1369"/>
    <dbReference type="GeneID" id="6165261"/>
    <dbReference type="KEGG" id="tne:Tneu_1369"/>
    <dbReference type="eggNOG" id="arCOG01185">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063953_2_0_2"/>
    <dbReference type="OrthoDB" id="31344at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000408">
        <property type="term" value="C:EKC/KEOPS complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.200.20:FF:000201">
        <property type="entry name" value="TP53-regulating kinase isoform X1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022495">
        <property type="entry name" value="Bud32"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018934">
        <property type="entry name" value="RIO_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03724">
        <property type="entry name" value="arch_bud32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12209:SF0">
        <property type="entry name" value="EKC_KEOPS COMPLEX SUBUNIT TP53RK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12209">
        <property type="entry name" value="NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01163">
        <property type="entry name" value="RIO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 13" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 13" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="Protein kinase" evidence="12">
        <location>
            <begin position="1"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00065170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB40295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="209" mass="24168" checksum="FA1BE5FABFFC6470" modified="2008-05-20" version="1">MLLIAKGAEAEIYLVDWFGIRAVLKWRKPKTYRDQTLDYLIRRRRTINEVRNMYIAYTAGVRVPSVYFFDPEKASIVMEYIEGENLRDLLNRGRFDVLLRAGAYVGKMHKAGLIHGDLAPTNIIQSGGELYFIDFGLGEARAGWSRKTAVLMARDVNVLLRTLDLYGDRAEELRQLFWNGYRDEMGPRASVVEKEVARIRASGRYVERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y983</accession>
    <name>B1Y983_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1386</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350731.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y983"/>
    <dbReference type="STRING" id="444157.Tneu_1386"/>
    <dbReference type="GeneID" id="6166011"/>
    <dbReference type="KEGG" id="tne:Tneu_1386"/>
    <dbReference type="eggNOG" id="arCOG05571">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_200167_0_0_2"/>
    <dbReference type="OrthoDB" id="28918at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="74" mass="8353" checksum="2055F23E41456514" modified="2008-05-20" version="1">MERLPEDVVAKLKKLSQELEGLGARSIVNYILYEFEVGGPSPEILDEAEQLVKLEMAELNEVLKVIEEVRKLVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y989</accession>
    <name>B1Y989_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphate uptake regulator, PhoU</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1393</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350737.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y989"/>
    <dbReference type="STRING" id="444157.Tneu_1393"/>
    <dbReference type="GeneID" id="6165033"/>
    <dbReference type="KEGG" id="tne:Tneu_1393"/>
    <dbReference type="eggNOG" id="arCOG00318">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069302_1_0_2"/>
    <dbReference type="OrthoDB" id="40991at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030643">
        <property type="term" value="P:intracellular phosphate ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045936">
        <property type="term" value="P:negative regulation of phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="entry name" value="Phosphate transport system protein phou homolog 2, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028366">
        <property type="entry name" value="PhoU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026022">
        <property type="entry name" value="PhoU_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42930">
        <property type="entry name" value="PHOSPHATE-SPECIFIC TRANSPORT SYSTEM ACCESSORY PROTEIN PHOU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42930:SF2">
        <property type="entry name" value="PHOU DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04014">
        <property type="entry name" value="MazE_antitoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01895">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00966">
        <property type="entry name" value="SpoVT_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109755">
        <property type="entry name" value="PhoU-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="1">
        <location>
            <begin position="10"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="335" mass="37859" checksum="627BE78FD487B918" modified="2008-05-20" version="1">MRGETRRVQLTGGATLIVSLPKEWAKRISLSPGDEVIVVTQPDDTLAIIPKKLGRRAGVIAELVINQPVEVEEVEKLFMALYIGGAETIVIKFSPSAMGLRRQIKDFIRRRVIDMEIMEEASDKLIVQSMVSATELAVVDIASKMLRLVHNMLNDLVQGLEKDDMAMLKDVIERDDEVDRLYWLMERQLKRAAMSRYIMLELKIDDPRDLVEYVIIAKSIERMGDHICRIAYVNQEEKIDVRVVAPILSKVAEFLRQAEALLGGDSTPQRIAELQREITQWGQKVRREEIPSDPATSVAKESAVRIGEYIGDIIESLGRIRLKDKAISVGEKVES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="60" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9B2</accession>
    <name>B1Y9B2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pullulanase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1416</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350760.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9B2"/>
    <dbReference type="STRING" id="444157.Tneu_1416"/>
    <dbReference type="GeneID" id="6164528"/>
    <dbReference type="KEGG" id="tne:Tneu_1416"/>
    <dbReference type="eggNOG" id="arCOG03771">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_718907_0_0_2"/>
    <dbReference type="OrthoDB" id="18576at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019248">
        <property type="entry name" value="Glucodextran_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09985">
        <property type="entry name" value="Glucodextran_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49344">
        <property type="entry name" value="CBD9-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="363"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="domain" description="Glucodextranase-like C-terminal" evidence="2">
        <location>
            <begin position="26"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="domain" description="Glucodextranase-like C-terminal" evidence="2">
        <location>
            <begin position="127"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="386" mass="41418" checksum="8208E741CF5B70B7" modified="2008-05-20" version="1">MNSKYGLLIIMLATLIYAQGLFTVQTATDPKGDFNGPGWYTPPLNPVFKNGTVFDITKFEVLYNASSDALILRITFSDLGGNPLNSETGFSLQYIQVYIHRGFPGNPWGTVSCSVLRPEDGNPAAGNAFYDEATRFFCPDPANLTQFKYTPGVKFSSSAPWDVAIFIGPKWGNDTVNLVAVADVTGGTISVSPLPRVYTQGSSVVAVVPRKLIPPTTRFMSDFPQPTWRYYVLVTAYDRNGPGRIIQFATQADASKAGAGSANASAIASGTLPRVFDVLGPNAPLRTFSKDSPATLEPQALSWGNFPLAYTTSTVNRLVPVTVTKTDTLTVTETATATQYITTTATSYVTQTQQIYVPYVDPVSYVVLGIGVLAGIAGALAAARRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9B4</accession>
    <name>B1Y9B4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">LPXTG-motif cell wall anchor domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1418</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein 5 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350762.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9B4"/>
    <dbReference type="STRING" id="444157.Tneu_1418"/>
    <dbReference type="GeneID" id="6164389"/>
    <dbReference type="KEGG" id="tne:Tneu_1418"/>
    <dbReference type="eggNOG" id="arCOG01672">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010991_0_0_2"/>
    <dbReference type="OrthoDB" id="194307at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904680">
        <property type="term" value="F:peptide transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.76.10">
        <property type="entry name" value="Dipeptide-binding Protein, Domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.105.10">
        <property type="entry name" value="Dipeptide-binding Protein, Domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290:SF9">
        <property type="entry name" value="OLIGOPEPTIDE-BINDING PROTEIN APPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53850">
        <property type="entry name" value="Periplasmic binding protein-like II"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="835"/>
            <end position="854"/>
        </location>
    </feature>
    <feature type="domain" description="Solute-binding protein family 5" evidence="6">
        <location>
            <begin position="29"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="800"/>
            <end position="826"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="4">
        <location>
            <begin position="800"/>
            <end position="814"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="863" mass="94783" checksum="32FD3258214209B2" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9C2</accession>
    <name>B1Y9C2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF72 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1426</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350770.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9C2"/>
    <dbReference type="STRING" id="444157.Tneu_1426"/>
    <dbReference type="GeneID" id="6164387"/>
    <dbReference type="KEGG" id="tne:Tneu_1426"/>
    <dbReference type="eggNOG" id="arCOG04291">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1192595_0_0_2"/>
    <dbReference type="OrthoDB" id="35747at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.410">
        <property type="entry name" value="Protein of unknown function UPF0759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002763">
        <property type="entry name" value="DUF72"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036520">
        <property type="entry name" value="UPF0759_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30348:SF4">
        <property type="entry name" value="DUF72 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30348">
        <property type="entry name" value="UNCHARACTERIZED PROTEIN YECE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01904">
        <property type="entry name" value="DUF72"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117396">
        <property type="entry name" value="TM1631-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="238" mass="27150" checksum="58FDB79DEAF0223A" modified="2008-05-20" version="1">MEIYVGTCGFPKSRRAIYEALDAVELQETFYNMPNPERMAKLRQEAPQFRFTAKVFQGLTHPPGSPTFKRTRGFKPGEKHGLLKPTGENLELWQRFLEAVAPLKPEVLVFQTPPSLRPEPYIYDFFASVVGGVKIAWEPRGETYRDPALIRRVAELGVIIAVDPLRREPPPGFTRYFRLHGLGGGEVNYRYRYTGEDLSRVAGILTSLGSGETYVMFNNVYMYEDALALKRLLKQQKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9D5</accession>
    <name>B1Y9D5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1439</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the flavin oxidoreductase frp family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350783.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9D5"/>
    <dbReference type="STRING" id="444157.Tneu_1439"/>
    <dbReference type="GeneID" id="6165067"/>
    <dbReference type="KEGG" id="tne:Tneu_1439"/>
    <dbReference type="eggNOG" id="arCOG00288">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070764_0_1_2"/>
    <dbReference type="OrthoDB" id="287850at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="entry name" value="NADH Oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016446">
        <property type="entry name" value="Flavin_OxRdtase_Frp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43425">
        <property type="entry name" value="OXYGEN-INSENSITIVE NADPH NITROREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43425:SF2">
        <property type="entry name" value="OXYGEN-INSENSITIVE NADPH NITROREDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005426">
        <property type="entry name" value="Frp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="FMN-dependent nitroreductase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0288">FMN</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="5">
        <location>
            <begin position="8"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="238" mass="26982" checksum="219B20F30E856EF3" modified="2008-05-20" version="1">MDCLEAVQRRRSIRKFKRVAMPEDDVKRIMEAGRLAPTDATLHLWTAVRVADSAVRSEVAKLIGQSHVEEASEFFVFLADLYRLRELLRYRDVQMAERKLALFIFAAVDAAIAAENMALAATALGYGTCFIGAVQNAPREIARMLELPDLTYPLFGLAIGVPDEDPEPRPRLPLELLFHRDRYRRYGEADLEDAYKAMARVTRSGDWLKVLSKYGGVGGYFDLRSAELERLLREFGIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9G5</accession>
    <name>B1Y9G5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sodium/hydrogen exchanger</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1469</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350813.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9G5"/>
    <dbReference type="STRING" id="444157.Tneu_1469"/>
    <dbReference type="GeneID" id="6166189"/>
    <dbReference type="KEGG" id="tne:Tneu_1469"/>
    <dbReference type="eggNOG" id="arCOG01969">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_543622_0_0_2"/>
    <dbReference type="OrthoDB" id="28957at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42751">
        <property type="entry name" value="SODIUM/HYDROGEN EXCHANGER FAMILY/TRKA DOMAIN PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42751:SF3">
        <property type="entry name" value="SODIUM_GLUTAMATE SYMPORTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="6"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="28"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="71"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="101"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="132"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="165"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="195"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="239"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="268"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="305"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="332"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="403"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="442"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="470"/>
            <end position="490"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="500" mass="53169" checksum="44B7A4DAADD80E52" modified="2008-05-20" version="1">MLLGEISIAVFIGVLFAYFLDRVGFPSFLGFFLAGALVGKLAGVALPEIYIQLLLSLVAFEVGRQLGAGGFSPAAFFAVIIEASLIVSFTTLIYKLAGLTLGDALVASVVMLSSSSLLTTKLVSGLPSEARSVALSLTSLEDAVLFFTLSLLLGGTNLGNLPISLVMLVALAAVALALFKFFYRYIVGRDYALPFALATAFALVYIVQSLHIASPFLGAFIGGYLFSKADVHGVHTREAAALSNLIIYIYMLALGVSIPAAAVDPLLLALSISAALLAVFIRAAAVFTSSWLVTGKPSLSVDVSLATAHISEISITIPILAYQLGVIKNAELALALAIAPVITLFLAPWAWGRRGALERFVSRRVGELKTAVAYEKLYRVLTHAFLAVAKLAILSVATALAIAYLWPASPVLLVLTLPFMVKYSRAMYRDLLIALREVGKARAASIVVVTSVFALSMYVAFALVVKIAEVHLYTSLLVAAVLLYNLFAVLRATRRSDNPV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-07-22" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9H2</accession>
    <name>DTDA_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">D-aminoacyl-tRNA deacylase</fullName>
            <ecNumber evidence="1">3.1.1.96</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName>D-tyrosyl-tRNA(Tyr) deacylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">dtdA</name>
        <name type="ordered locus">Tneu_1476</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a D-aminoacyl-tRNA + H2O = a tRNA + a D-alpha-amino acid + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13953"/>
            <dbReference type="Rhea" id="RHEA-COMP:10123"/>
            <dbReference type="Rhea" id="RHEA-COMP:10124"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:59871"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:79333"/>
            <dbReference type="EC" id="3.1.1.96"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>glycyl-tRNA(Ala) + H2O = tRNA(Ala) + glycine + H(+)</text>
            <dbReference type="Rhea" id="RHEA:53744"/>
            <dbReference type="Rhea" id="RHEA-COMP:9657"/>
            <dbReference type="Rhea" id="RHEA-COMP:13640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78522"/>
            <dbReference type="EC" id="3.1.1.96"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DtdA deacylase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.96" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350820.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9H2"/>
    <dbReference type="SMR" id="B1Y9H2"/>
    <dbReference type="STRING" id="444157.Tneu_1476"/>
    <dbReference type="GeneID" id="6165793"/>
    <dbReference type="KEGG" id="tne:Tneu_1476"/>
    <dbReference type="eggNOG" id="arCOG01616">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056464_1_0_2"/>
    <dbReference type="OrthoDB" id="9863at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051499">
        <property type="term" value="F:D-aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106026">
        <property type="term" value="F:Gly-tRNA(Ala) deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019478">
        <property type="term" value="P:D-amino acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10700">
        <property type="entry name" value="AF0625-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.50">
        <property type="entry name" value="AF0625-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00562">
        <property type="entry name" value="Deacylase_DtdA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018033">
        <property type="entry name" value="Deacylase_DtdA_archaea"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007508">
        <property type="entry name" value="DtdA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34667">
        <property type="entry name" value="D-AMINOACYL-TRNA DEACYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34667:SF1">
        <property type="entry name" value="D-AMINOACYL-TRNA DEACYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04414">
        <property type="entry name" value="tRNA_deacylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016210">
        <property type="entry name" value="UCP016210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142535">
        <property type="entry name" value="AF0625-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_0000345232" description="D-aminoacyl-tRNA deacylase">
        <location>
            <begin position="1"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00562"/>
        </source>
    </evidence>
    <sequence length="252" mass="28062" checksum="E61D13CCDF3750C6" modified="2008-05-20" version="1">MYVVVLSLGDPVSRTFLELVPEMPLVETRGEIEVRKFGEWPAVVHKGEPTDFNREDLLLSLGKYAIFISRHEMANPRPMFTVHTPGSWPDVSVANPPLATAIFRALCRHAEEPFKCAFEATHHPPNTSAASATFVEVGSTEAEWRDRRAVGVLVQALEEVLGRELGAGATTMVVGDLHYSTVADSALNGEVELGHILPKYLETTLQHVKTAFYKHTTPVRRVVVFRKNVKNPARAEVVEFLREREVEVVLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9H3</accession>
    <name>B1Y9H3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1477</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M20A family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350821.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9H3"/>
    <dbReference type="STRING" id="444157.Tneu_1477"/>
    <dbReference type="GeneID" id="6165912"/>
    <dbReference type="KEGG" id="tne:Tneu_1477"/>
    <dbReference type="eggNOG" id="arCOG01107">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021802_2_3_2"/>
    <dbReference type="OrthoDB" id="24854at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.10">
        <property type="entry name" value="Zn peptidases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010182">
        <property type="entry name" value="ArgE/DapE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050072">
        <property type="entry name" value="Peptidase_M20A"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01910">
        <property type="entry name" value="DapE-ArgE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006400">
        <property type="entry name" value="PRK08651.1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43808">
        <property type="entry name" value="ACETYLORNITHINE DEACETYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43808:SF32">
        <property type="entry name" value="ARGE_DAPE-RELATED DEACYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="Bacterial exopeptidase dimerisation domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53187">
        <property type="entry name" value="Zn-dependent exopeptidases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0170">Cobalt</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase M20 dimerisation" evidence="8">
        <location>
            <begin position="182"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="399" mass="43854" checksum="389E732CB5BAA291" modified="2008-05-20" version="1">MEEKAVSLLSKLISIPTVNPPGENYAQFVDAAERYFKSLGLDTEVLEVPRSEVASRCPECADHPRYILLARLGEPKIHFNGHYDVVPPGPQESWKITKPFEPLYRDGRLYGRGAVDMKGGITSIMLAVERATAAGLKNFEVSLVPDEEIGGETGAGYLARSGKVKAPWVIIAEGSGEDNIWIGHRGLVWFMVEVYGKQTHGSTPWLGLNAFEGAVYIAHRLQEYIRAVSTRASRYEYDDPRGATPTVTIGGEVRGSVKTNVVPGYFAFSVDRRVIPEENVEDVKREFISFIERVARDIPHKVEVKVTNVSEAALVEPSHPLVETLASAVEKVIGRRPRRTVCIGGLDARFFIKAGLPTVTYGPGPIGMAHAPDEYVEVRQVVNVAEAYLNLIKSVNAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9H4</accession>
    <name>B1Y9H4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1478</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9H4"/>
    <dbReference type="STRING" id="444157.Tneu_1478"/>
    <dbReference type="KEGG" id="tne:Tneu_1478"/>
    <dbReference type="eggNOG" id="arCOG00288">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059362_3_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02142">
        <property type="entry name" value="McbC_SagB-like_oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="entry name" value="NADH Oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052544">
        <property type="entry name" value="Bacteriocin_Proc_Enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020051">
        <property type="entry name" value="SagB-type_dehydrogenase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03605">
        <property type="entry name" value="antibiot_sagB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43745">
        <property type="entry name" value="NITROREDUCTASE MJ1384-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43745:SF2">
        <property type="entry name" value="NITROREDUCTASE MJ1384-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="FMN-dependent nitroreductase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="1">
        <location>
            <begin position="30"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="235" mass="26076" checksum="EEC4B28B3E93586D" modified="2008-05-20" version="1">MRKAARGGLYEVLLPFPRLRGSISLEEALANRRSVREFSDDPITLEELGQLLWATYGISEVRHGFRTAPSAGALYPLEIYAVVGERGVAYGGGFLEAGVYHYDVYRHSLVLRRRGDFREALYRAALEQDWVLAAPLSIVIAAVYQRTARVYGERGRVRYVPMDVGHAGQNLYLQAVALGLGTVAVGAFDDGAVAEALGLPPEETPLYIMPVGRPRVPYRLEEEDLRAFYSARRSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="40" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9I1</accession>
    <name>B1Y9I1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1486</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350829.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9I1"/>
    <dbReference type="GeneID" id="6166074"/>
    <dbReference type="KEGG" id="tne:Tneu_1486"/>
    <dbReference type="HOGENOM" id="CLU_1682770_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="156" mass="17294" checksum="6E1A7D71911173DE" modified="2008-05-20" version="1">MRYVGVEPIGTLYGWRGSAYLYIGVYSTAGGSPLKYLYVQIRRGRKQTVYLGPAAEAVKVIAAAAGKIAVEAGIDMERVEGWLRARLREAIERGALGDAPAALQLLRGRGVDDVIAFLEEVAMDIEAEYGKRAAEWIRTRWRRLLDQLWRLAPDAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9P1</accession>
    <name>B1Y9P1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative methylthioribose-1-phosphate isomerase</fullName>
            <shortName evidence="2">M1Pi</shortName>
            <shortName evidence="2">MTR-1-P isomerase</shortName>
            <ecNumber evidence="2">5.3.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">MTNA-like protein</fullName>
            <shortName evidence="2">aMTNA</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">S-methyl-5-thioribose-1-phosphate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>5-(methylsulfanyl)-alpha-D-ribose 1-phosphate = 5-(methylsulfanyl)-D-ribulose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:19989"/>
            <dbReference type="ChEBI" id="CHEBI:58533"/>
            <dbReference type="ChEBI" id="CHEBI:58548"/>
            <dbReference type="EC" id="5.3.1.23"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the EIF-2B alpha/beta/delta subunits family. MtnA subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.23" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349385.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9P1"/>
    <dbReference type="STRING" id="444157.Tneu_0005"/>
    <dbReference type="GeneID" id="6165853"/>
    <dbReference type="KEGG" id="tne:Tneu_0005"/>
    <dbReference type="eggNOG" id="arCOG01123">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016218_1_2_2"/>
    <dbReference type="OrthoDB" id="45195at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046523">
        <property type="term" value="F:S-methyl-5-thioribose-1-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019509">
        <property type="term" value="P:L-methionine salvage from methylthioadenosine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="1.20.120.420:FF:000003">
        <property type="entry name" value="Methylthioribose-1-phosphate isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.10470:FF:000006">
        <property type="entry name" value="Methylthioribose-1-phosphate isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.420">
        <property type="entry name" value="translation initiation factor eif-2b, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10470">
        <property type="entry name" value="Translation initiation factor eif-2b, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01678">
        <property type="entry name" value="Salvage_MtnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000649">
        <property type="entry name" value="IF-2B-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005251">
        <property type="entry name" value="IF-M1Pi"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042529">
        <property type="entry name" value="IF_2B-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011559">
        <property type="entry name" value="Initiation_fac_2B_a/b/d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027363">
        <property type="entry name" value="M1Pi_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00524">
        <property type="entry name" value="eIF-2B_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004326">
        <property type="entry name" value="PRK05720.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004436">
        <property type="entry name" value="PRK05772.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00512">
        <property type="entry name" value="salvage_mtnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43475">
        <property type="entry name" value="METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43475:SF1">
        <property type="entry name" value="METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01008">
        <property type="entry name" value="IF-2B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="NagB/RpiA/CoA transferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="1 2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="253"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="59"/>
            <end position="61"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="212"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="263"/>
            <end position="264"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="2">
        <location>
            <position position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB38963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="365" mass="40377" checksum="426F24E48B24A0D4" modified="2008-05-20" version="1">MEKLVEEVKRRFKPKIKPIEWRGDRLILLDQRRLPFETRYVEARTVAEVADAIRNMVVRGAPAIGITAAFGMVISLLESRPKTVQEALAVLASARDQLSKTRPTAVNLFWALDRMYNKAQALATSTTSVEELEAGLEKEAVAIFEEELEAEIRMGLYGAELLEDGDTVLTICNAGGLATGTGLGTATAPIYVANMLGKRVSVVAPETRPWQQGARLTVYELVQNGVNTTLIADTAVGLVMYRKLINLVMVGADRVLLDGHVYNKIGTLNEAVLAREFGIPFYVLAPTSTIDPRSRVEDVKIEERDPDEVRTARSEQGVVYVTMRDVPVYNPVFDVTPPKYITGIITERGIATQPLHKTLRRLLKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9X8</accession>
    <name>B1Y9X8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">50S ribosomal protein L7ae</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350947.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9X8"/>
    <dbReference type="STRING" id="444157.Tneu_1605"/>
    <dbReference type="GeneID" id="6165874"/>
    <dbReference type="KEGG" id="tne:Tneu_1605"/>
    <dbReference type="eggNOG" id="arCOG05667">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1648375_0_0_2"/>
    <dbReference type="OrthoDB" id="25020at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="160" mass="17875" checksum="8F3C6A6A741FC118" modified="2008-05-20" version="1">MMLGEAAGRYLLRDFYTHLLFDVSNPLGDVTVIPPPPGSSYQFAVVGALVAKMGYRTRVLNMSTCRRQTIQRVLSQASGELLYVGYAHRLAYAGPGAVVNQEEVTLENVRRVARGNVKFRVMWGRCLGGDLQQREVVNLGRLPEALGRLEVWLAERLGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Y9</accession>
    <name>B1Y9Y9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">OBG-type G domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1616</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350958.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Y9"/>
    <dbReference type="STRING" id="444157.Tneu_1616"/>
    <dbReference type="GeneID" id="6165788"/>
    <dbReference type="KEGG" id="tne:Tneu_1616"/>
    <dbReference type="eggNOG" id="arCOG00357">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037276_1_0_2"/>
    <dbReference type="OrthoDB" id="5875at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01899">
        <property type="entry name" value="Ygr210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031167">
        <property type="entry name" value="G_OBG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013646">
        <property type="entry name" value="YGR210-like_G4"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF007171">
        <property type="entry name" value="PRK09602.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23305">
        <property type="entry name" value="OBG GTPASE FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23305:SF1">
        <property type="entry name" value="OBG-TYPE G DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02824">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08438">
        <property type="entry name" value="YGR210-like_G4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="TGS-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51710">
        <property type="entry name" value="G_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OBG-type G" evidence="2">
        <location>
            <begin position="7"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="401" mass="43818" checksum="607CBCD26C3485A1" modified="2008-05-20" version="1">MVTQARVQIGVVGKPNAGKSTFFAAATLKDVKISPTPFTTIDPNIGIGYVRIDGCPCSEIKCSPRTYAVVDGVCFAPVELIDVAGLVPGAWQGRGLGNQFLDHLRRAPVLIHVVDASGSTDEEGRLVKPGSHDPVSDVYFLEREVDMWMASILRKDWDRVVRQVEFSKRDTAEVLLEKLAGLGIGRAQIERALQEADLSKKPPSRWGEEGLLKFVGLARAYSKPIVIAANKIDIPEGEEGYRRLKEAFPDRIVVPTSAEAELALRRAAARGLIRYKPGDRSFEVVGQLTPQQKAVLDKIATLLEKWGSTGVTKAINTAVFDALKYVAVYPVEDEKKLSDKSGNVLPDLLLVPHTYTARDVAYAIHTELGERFVSAVDARSGRRLAADEPVSNGLIIKILAR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA33</accession>
    <name>RL2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Large ribosomal subunit protein uL2</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">50S ribosomal protein L2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpl2</name>
        <name type="ordered locus">Tneu_0049</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit. Forms a bridge to the 30S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL2 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349428.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA33"/>
    <dbReference type="SMR" id="B1YA33"/>
    <dbReference type="STRING" id="444157.Tneu_0049"/>
    <dbReference type="GeneID" id="6164598"/>
    <dbReference type="KEGG" id="tne:Tneu_0049"/>
    <dbReference type="eggNOG" id="arCOG04067">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036235_0_3_2"/>
    <dbReference type="OrthoDB" id="5987at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022625">
        <property type="term" value="C:cytosolic large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002181">
        <property type="term" value="P:cytoplasmic translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="4.10.950.10:FF:000002">
        <property type="entry name" value="60S ribosomal protein L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.950.10">
        <property type="entry name" value="Ribosomal protein L2, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01320_A">
        <property type="entry name" value="Ribosomal_uL2_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_uL2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002171">
        <property type="entry name" value="Ribosomal_uL2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023672">
        <property type="entry name" value="Ribosomal_uL2_arc_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022669">
        <property type="entry name" value="Ribosomal_uL2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014726">
        <property type="entry name" value="Ribosomal_uL2_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022666">
        <property type="entry name" value="Ribosomal_uL2_RNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF007180">
        <property type="entry name" value="PRK09612.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13691:SF16">
        <property type="entry name" value="LARGE RIBOSOMAL SUBUNIT PROTEIN UL2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13691">
        <property type="entry name" value="RIBOSOMAL PROTEIN L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03947">
        <property type="entry name" value="Ribosomal_L2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002158">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01383">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01382">
        <property type="entry name" value="Ribosomal_L2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="Translation proteins SH3-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000141629" description="Large ribosomal subunit protein uL2">
        <location>
            <begin position="1"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="196"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="3"/>
    <sequence length="245" mass="26169" checksum="9A963A50B7CB1218" modified="2008-05-20" version="1">MGKRILVQRRGRGGSQFRSPSWRREGPVRYPPLGTAGRGYVVDIIHVPGLNAPVAKIRLENGLEFLNYAAEGLYVGQEIEIGEAASPKTGNVVVLGKAPEGTMVFNVEKRPGDGGKFARSGGTYAVVVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAMSPYAHPHGGGSHQKGGTPVSKTAPPGQKVGFIGSRCTGRGCVRARAQQKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA57</accession>
    <name>B1YA57_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0073</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349452.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA57"/>
    <dbReference type="STRING" id="444157.Tneu_0073"/>
    <dbReference type="GeneID" id="6164536"/>
    <dbReference type="KEGG" id="tne:Tneu_0073"/>
    <dbReference type="eggNOG" id="arCOG03733">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1149861_0_0_2"/>
    <dbReference type="OrthoDB" id="28197at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="152"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="239" mass="27380" checksum="1665CF54A6ADC803" modified="2008-05-20" version="1">MSVCPALRRSEGGFVCGYSNKPIDPFSWYCIGNYAECPIFIRFSRERPPAPKPEEAPKPLAEVLPLAPEKAEAEFEKAIKPVIDNVVLKYDDLVKKLDDMWKEYESGVVGARRQWEVEKMSLLRAQELLSRTIGDYEKMLAEVELKRDFMPQDAYETTRKDLEAKLEALRSLLEEVRSKYAALEEGLGAHFKRVLSTSTSTEVISLKLSLSKLDELLKEGKISRDTYEKLKKELEELLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA81</accession>
    <name>B1YA81_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNAHis guanylyltransferase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0097</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349476.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA81"/>
    <dbReference type="STRING" id="444157.Tneu_0097"/>
    <dbReference type="GeneID" id="6164393"/>
    <dbReference type="KEGG" id="tne:Tneu_0097"/>
    <dbReference type="eggNOG" id="arCOG03218">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101660_0_0_2"/>
    <dbReference type="OrthoDB" id="24661at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008193">
        <property type="term" value="F:tRNA guanylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024956">
        <property type="entry name" value="tRNAHis_GuaTrfase_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038469">
        <property type="entry name" value="tRNAHis_GuaTrfase_Thg1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04446">
        <property type="entry name" value="Thg1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNAHis guanylyltransferase catalytic" evidence="1">
        <location>
            <begin position="17"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="212" mass="23307" checksum="101D657FA014CA24" modified="2008-05-20" version="1">MDPLKRLLMENPRHLEMRYREREAVCEPASPPVAVRLDGVGFGKRLRDFPAPRSRLVHTAIAEVARDLAAQHGAEFVHVVSDEINLLFLTSVPYGGRTFKLASVLAAQAAAGVTAKLGRPLYFDGRVVKLADRCDAARYVLFRARVGLNNYVVKAARLAGVVGAETPRIEELLAAVKIEDFELAWGSFMYKEGGYARSGDLCNAVSQLCEMC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA96</accession>
    <name>B1YA96_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Bacterial repeat domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0112</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349491.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA96"/>
    <dbReference type="STRING" id="444157.Tneu_0112"/>
    <dbReference type="GeneID" id="6166226"/>
    <dbReference type="KEGG" id="tne:Tneu_0112"/>
    <dbReference type="eggNOG" id="arCOG05471">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_343767_0_0_2"/>
    <dbReference type="OrthoDB" id="28327at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="entry name" value="YVTN repeat-like/Quinoprotein amine dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="Quinoprotein alcohol dehydrogenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="813"/>
            <end position="832"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="846" mass="90956" checksum="3B6BB4202718358C" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA98</accession>
    <name>B1YA98_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0114</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349493.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA98"/>
    <dbReference type="STRING" id="444157.Tneu_0114"/>
    <dbReference type="GeneID" id="6165898"/>
    <dbReference type="KEGG" id="tne:Tneu_0114"/>
    <dbReference type="eggNOG" id="arCOG07433">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1763957_0_0_2"/>
    <dbReference type="OrthoDB" id="28207at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="148" mass="16031" checksum="1715E599F4361AA6" modified="2008-05-20" version="1">MRWVLELFVVVVLLGAVTYFFAAALPQGPSAVQSNRESMEQLFTNLARLMLDPQFLSSLEGAICNDANALRYVSTALDLSLGPQYVYNMTVLPGKLLPPCLACASPQSRLLSLARPYGYSGPSVYNATFYVLLPSGADVRIVLAVGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAB6</accession>
    <name>B1YAB6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1643</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350984.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAB6"/>
    <dbReference type="STRING" id="444157.Tneu_1643"/>
    <dbReference type="GeneID" id="6165661"/>
    <dbReference type="KEGG" id="tne:Tneu_1643"/>
    <dbReference type="eggNOG" id="arCOG05663">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2271145_0_0_2"/>
    <dbReference type="OrthoDB" id="24925at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="102" mass="11508" checksum="EFFEAE1F5B2949CC" modified="2008-05-20" version="1">MDYSIEHARVKELVEKAQCTGSTPLDVVNCIKERLREAGYAPTAAQLLDANVDPAERPEQARFIRLEARREGDRNTHIFTFALLKPGGVYKPLWLQSAVVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAE8</accession>
    <name>B1YAE8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MoeA domain protein domain I and II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351016.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAE8"/>
    <dbReference type="STRING" id="444157.Tneu_1675"/>
    <dbReference type="GeneID" id="6165248"/>
    <dbReference type="KEGG" id="tne:Tneu_1675"/>
    <dbReference type="eggNOG" id="arCOG00216">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010186_7_2_2"/>
    <dbReference type="OrthoDB" id="31371at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061599">
        <property type="term" value="F:molybdopterin molybdotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00887">
        <property type="entry name" value="MoeA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="entry name" value="MoaB/Mog-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.340.10">
        <property type="entry name" value="MoeA, C-terminal, domain IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.105.10">
        <property type="entry name" value="Molybdopterin biosynthesis moea protein, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.190.11">
        <property type="entry name" value="Molybdopterin biosynthesis moea protein, domain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038987">
        <property type="entry name" value="MoeA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036688">
        <property type="entry name" value="MoeA_C_domain_IV_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005110">
        <property type="entry name" value="MoeA_linker/N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036135">
        <property type="entry name" value="MoeA_linker/N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10192">
        <property type="entry name" value="MOLYBDOPTERIN BIOSYNTHESIS PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10192:SF19">
        <property type="entry name" value="MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MJ0666-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03453">
        <property type="entry name" value="MoeA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63882">
        <property type="entry name" value="MoeA N-terminal region -like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="Molybdenum cofactor biosynthesis proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoaB/Mog" evidence="1">
        <location>
            <begin position="179"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="406" mass="44040" checksum="9174DF372B4744CD" modified="2008-05-20" version="1">MRYLTGLNPVSKVADILPQVKRVEEVEKVAAWDAAGRVAARDVVAPHDYPPYPRAAYDGYAVSSEETPGRFKLVGAVLVGQYRRDLVLGRGEAAYVTVGAFLPEGADAVVPEEAARKEGELVAVERRFEKYANVDPPGSYVRKGTVLLRQGTVVTPFDVVGLLDVGITSLYVYRKLRLGIIATGDELVAPPIDPEVAAELVMRGRVIESTASLVSWYIQTYMPYVEVREKAVLGDRHEEVRAAVERFLQQYDAVVITGGAGPSEIDHFYKLGFGGLRGFRMKPGRPTSVAVVGGKPVFGLSGYPISALHGVVRIVEPVLRHMANVARGLGHGWHYAVITQDVQGEMAQIVRVRLEVGEGGLQATPIKTRHHSFTDPDACGVALVPPGGAKRGDVVLVLAYRDLRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAH9</accession>
    <name>B1YAH9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6036 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1708</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351047.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAH9"/>
    <dbReference type="GeneID" id="6165528"/>
    <dbReference type="KEGG" id="tne:Tneu_1708"/>
    <dbReference type="eggNOG" id="arCOG04119">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1521959_0_0_2"/>
    <dbReference type="OrthoDB" id="26136at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045792">
        <property type="entry name" value="DUF6036"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19502">
        <property type="entry name" value="DUF6036"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="Nucleotidyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6036" evidence="1">
        <location>
            <begin position="25"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="179" mass="20247" checksum="76710B4286FA3B92" modified="2008-05-20" version="1">MSELRLPPSVKRVVEICRSMGFKVFLIGARALEFYGVVRHTADWDLAIDQPFTVEVRDRLTEALRGAGYAVQWRKWGLYVDAAGVHIYHAPLMLDSDFISRCREAGGVFIPSPEDLVILKLASGERKDIDDLKRLLRLPLDLSYLKKRALQAGLDKELWKIWRSPPLRRPASPGGLGHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="53" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAP0</accession>
    <name>B1YAP0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0162</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349540.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAP0"/>
    <dbReference type="STRING" id="444157.Tneu_0162"/>
    <dbReference type="GeneID" id="6165042"/>
    <dbReference type="KEGG" id="tne:Tneu_0162"/>
    <dbReference type="eggNOG" id="arCOG07010">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2476140_0_0_2"/>
    <dbReference type="OrthoDB" id="28953at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="88" mass="9630" checksum="905EC41AE2203943" modified="2008-05-20" version="1">MDRFDVVVGLAVVVFVSLVLSGLWSLFGHAAPFCSTLWLYAMLGALAGGSLLLSRWYRQLEAVGVGLTILYLLVMWVTYVNPGYLANC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAP7</accession>
    <name>B1YAP7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thiamine monophosphate kinase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349547.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAP7"/>
    <dbReference type="STRING" id="444157.Tneu_0170"/>
    <dbReference type="GeneID" id="6164983"/>
    <dbReference type="KEGG" id="tne:Tneu_0170"/>
    <dbReference type="eggNOG" id="arCOG00638">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046964_2_1_2"/>
    <dbReference type="OrthoDB" id="45909at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009030">
        <property type="term" value="F:thiamine-phosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02194">
        <property type="entry name" value="ThiL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="entry name" value="PurM-like C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="entry name" value="PurM-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006283">
        <property type="entry name" value="ThiL-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30270">
        <property type="entry name" value="THIAMINE-MONOPHOSPHATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30270:SF0">
        <property type="entry name" value="THIAMINE-MONOPHOSPHATE KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="PurM C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="PurM N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PurM-like N-terminal" evidence="1">
        <location>
            <begin position="25"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="284" mass="31406" checksum="8CDCE425B370F6E2" modified="2008-05-20" version="1">MDEKEFLRSLLARLGAEENDVVYADGLALKIDGAAAATSKLPFQTWRDFGWRNVAAAYSDVRVKYVEPLYMLVSVTAPRLEEAAEVIEGVREAAERLSLRYVGGDLNQGGDVVVDVAIVGRAGPRIGRVPKPGDVLVTIPAYGYTGLAYRFWGERHPAVERGVAMLKRPEPLWPLPPPECVTASMDSSDGLGDVLWTMAKGVDIVVKRLPAPREVLELAEERGVEVGEVVFNGGEEFLPVFAVRRGCGVGEPYVEFAEAVEGEGRVVWENRELRWRGWSYFRRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="74" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAP9</accession>
    <name>B1YAP9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Ribose 5-phosphate isomerase A</fullName>
            <ecNumber evidence="3">5.3.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0172</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ribose 5-phosphate isomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.6" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349549.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAP9"/>
    <dbReference type="STRING" id="444157.Tneu_0172"/>
    <dbReference type="GeneID" id="6164761"/>
    <dbReference type="KEGG" id="tne:Tneu_0172"/>
    <dbReference type="eggNOG" id="arCOG01122">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056590_1_1_2"/>
    <dbReference type="OrthoDB" id="19013at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004751">
        <property type="term" value="F:ribose-5-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006014">
        <property type="term" value="P:D-ribose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009052">
        <property type="term" value="P:pentose-phosphate shunt, non-oxidative branch"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01398">
        <property type="entry name" value="RPI_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.260:FF:000018">
        <property type="entry name" value="Ribose-5-phosphate isomerase A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004788">
        <property type="entry name" value="Ribose5P_isomerase_type_A"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001924">
        <property type="entry name" value="PRK00702.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00021">
        <property type="entry name" value="rpiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11934">
        <property type="entry name" value="RIBOSE-5-PHOSPHATE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11934:SF0">
        <property type="entry name" value="RIBOSE-5-PHOSPHATE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06026">
        <property type="entry name" value="Rib_5-P_isom_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75445">
        <property type="entry name" value="D-ribose-5-phosphate isomerase (RpiA), lid domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="NagB/RpiA/CoA transferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="NCBIfam" id="TIGR00021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="223" mass="24087" checksum="EEE2B7EDD9CD0F85" modified="2008-05-20" version="1">MGKALVAREAVKYIKSGMVVGLGSGTTAREFIKALGELGPRDVALVATSVDSELLAVEVGLGDRLRPLWAVDRIDIAVDGADEVTEEKILLKGRGGALLREKVVDYMAERFLVLIEEHKLVQHIPARNPIPIEVVPWAWRSVARAVEAKFGGTAKLRQDGAKLGPALTDNGNYLLDWTPPGPVEPSLEEELKLIPGVVENGIFSKRRDATVLVARGDGTLKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="86" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAR7</accession>
    <name>B1YAR7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0190</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349567.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAR7"/>
    <dbReference type="STRING" id="444157.Tneu_0190"/>
    <dbReference type="GeneID" id="6165025"/>
    <dbReference type="KEGG" id="tne:Tneu_0190"/>
    <dbReference type="eggNOG" id="arCOG00193">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_2"/>
    <dbReference type="OrthoDB" id="10909at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03293">
        <property type="entry name" value="ABC_NrtD_SsuB_transporters"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050166">
        <property type="entry name" value="ABC_transporter_ATP-bind"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42788:SF13">
        <property type="entry name" value="ALIPHATIC SULFONATES IMPORT ATP-BINDING PROTEIN SSUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42788">
        <property type="entry name" value="TAURINE IMPORT ATP-BINDING PROTEIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="4"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="244" mass="27268" checksum="1B6693A5379B67C5" modified="2008-05-20" version="1">MALIEVEGVKKSYGEVVVFNGISMAIEKGEFVALLGPSGCGKSTLLRMLAGLERPDAGVVKFRGEPIREPRREIALMFQFPNLLPWKTALDNVALPLVARGMSWGEAREVAARYLSFVGLSGFEEAYPRQLSGGMQQRVALARALAVEPEVLLLDEPFSALDPLTAESLRSELVKMWHDNLTTIHTMAMVTHSVDEAVYMANRVVVFSPRPAKIVADLRIDLPYPRNRRSQEFQKYLDQIYAYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAS1</accession>
    <name>B1YAS1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0194</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349571.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAS1"/>
    <dbReference type="STRING" id="444157.Tneu_0194"/>
    <dbReference type="GeneID" id="6164402"/>
    <dbReference type="KEGG" id="tne:Tneu_0194"/>
    <dbReference type="eggNOG" id="arCOG01145">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041441_5_0_2"/>
    <dbReference type="OrthoDB" id="50367at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051693">
        <property type="entry name" value="UPF0046_metallophosphoest"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12905:SF0">
        <property type="entry name" value="CALCINEURIN-LIKE PHOSPHOESTERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12905">
        <property type="entry name" value="METALLOPHOSPHOESTERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Calcineurin-like phosphoesterase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="208" mass="22689" checksum="457A0385D2ABA3A1" modified="2008-05-20" version="1">MRLLLVTDVHDGVDKIKALRGSYDAVVAAGDYTYRRTMEAAVEALEALAQIAPVYFVPGNTDPPELAAYEKSSIVPLHGRTQRLGPYILGGAGGSLPTPFNDLFRVSEEELEAILRSLDPTPHILVVHNPPRGHLDRVGGVRPVGSVAVRRYIEEKQPLLAVHGHIHEDRGIDLLGDTILVNPGPLKDGYYAEALLEGHKATVWLRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="85" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAT6</accession>
    <name>B1YAT6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">6-phosphogluconate dehydrogenase NAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0210</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HIBADH-related family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349586.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAT6"/>
    <dbReference type="STRING" id="444157.Tneu_0210"/>
    <dbReference type="GeneID" id="6165040"/>
    <dbReference type="KEGG" id="tne:Tneu_0210"/>
    <dbReference type="eggNOG" id="arCOG00247">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035117_1_0_2"/>
    <dbReference type="OrthoDB" id="23890at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="entry name" value="N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.720">
        <property type="entry name" value="NAD(P)-binding Rossmann-like Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002204">
        <property type="entry name" value="3-OH-isobutyrate_DH-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029154">
        <property type="entry name" value="HIBADH-like_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015815">
        <property type="entry name" value="HIBADH-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43060">
        <property type="entry name" value="3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43060:SF15">
        <property type="entry name" value="3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14833">
        <property type="entry name" value="NAD_binding_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000103">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="6-phosphogluconate dehydrogenase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="NAD(P)-binding Rossmann-fold domains"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00895">
        <property type="entry name" value="3_HYDROXYISOBUT_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0520">NAD</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="6-phosphogluconate dehydrogenase NADP-binding" evidence="4">
        <location>
            <begin position="2"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="3-hydroxyisobutyrate dehydrogenase-like NAD-binding" evidence="5">
        <location>
            <begin position="164"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF14833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="284" mass="30262" checksum="69E8279447951848" modified="2008-05-20" version="1">MRVGVVGLGIMGAPMAMHLHKAGLLAAVYNRTRSKAEPFQKLGVYVADSPADLARRVDVAIIMVSDAPDVEQVLFGQGGVVEGARPGLVVVDMSTNSPDWARRFAERLAKHGIKFLDAPVTGGQKAAVEGTLTIMVGGDEALFRQLEPVFKAFGKTIVYAGPVGYGQAMKLVNQIVIALNTVAMVEGLRLAKALGLDLEKVAQVLSSGSARSGSIELYLPKLLRGDMSPGFKAAHLKKDLAYALELAHRMNLFVPGASLALELYKKMVERGLGELGIHALGEIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAX1</accession>
    <name>B1YAX1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Putative adenylate kinase</fullName>
            <shortName evidence="7">AK</shortName>
            <ecNumber evidence="7">2.7.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">ATP-AMP transphosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_1753</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity. Involved in the late maturation steps of the 30S ribosomal particles, specifically 16S rRNA maturation. While NMP activity is not required for ribosome maturation, ATPase activity is. Associates transiently with small ribosomal subunit protein uS11. ATP hydrolysis breaks the interaction with uS11. May temporarily remove uS11 from the ribosome to enable a conformational change of the ribosomal RNA that is needed for the final maturation step of the small ribosomal subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>AMP + ATP = 2 ADP</text>
            <dbReference type="Rhea" id="RHEA:12973"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + H2O = ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Interacts with uS11. Not a structural component of 40S pre-ribosomes, but transiently interacts with them by binding to uS11.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the adenylate kinase family. AK6 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.3" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351090.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAX1"/>
    <dbReference type="STRING" id="444157.Tneu_1753"/>
    <dbReference type="GeneID" id="6166179"/>
    <dbReference type="KEGG" id="tne:Tneu_1753"/>
    <dbReference type="eggNOG" id="arCOG01038">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079096_0_0_2"/>
    <dbReference type="OrthoDB" id="8730at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004017">
        <property type="term" value="F:AMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00039">
        <property type="entry name" value="Adenylate_kinase_AK6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020618">
        <property type="entry name" value="Adenyl_kinase_AK6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12595:SF0">
        <property type="entry name" value="ADENYLATE KINASE ISOENZYME 6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12595">
        <property type="entry name" value="POS9-ACTIVATING FACTOR FAP7-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13238">
        <property type="entry name" value="AAA_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="2 7" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="3 7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="LID" evidence="7">
        <location>
            <begin position="109"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="20"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB40671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="201" mass="22493" checksum="2230402B408081F6" modified="2008-05-20" version="1">MTSGGRGPKALITGTPGVGKTTQCRKLAAWLSTVCVSVGELLAGTPYVRYIPELDTHEIVDVEAATRHVHKAAAPGTVVDTHVVDLPPDPELVIVLRKAPDVLYRELSSRGWPQRKVIDNVWAEILDVVYTEARGRWGRVYQIDVTRRDPQDTFELIRRCVLGECPNDEVDWLTYSEETGFLQFIERESAKFYSPSAPTRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="95" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAY2</accession>
    <name>B1YAY2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">NAD-dependent protein deacetylase</fullName>
            <ecNumber evidence="8">2.3.1.286</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Regulatory protein SIR2 homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">cobB</name>
        <name evidence="11" type="ordered locus">Tneu_1764</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form. Deacetylates the N-terminal lysine residue of Alba, the major archaeal chromatin protein and that, in turn, increases Alba's DNA binding affinity, thereby repressing transcription.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>N(6)-acetyl-L-lysyl-[protein] + NAD(+) + H2O = 2''-O-acetyl-ADP-D-ribose + nicotinamide + L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:43636"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:10731"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:61930"/>
            <dbReference type="ChEBI" id="CHEBI:83767"/>
            <dbReference type="EC" id="2.3.1.286"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="8">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the sirtuin family. Class U subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.286" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAY2"/>
    <dbReference type="STRING" id="444157.Tneu_1764"/>
    <dbReference type="KEGG" id="tne:Tneu_1764"/>
    <dbReference type="eggNOG" id="arCOG04248">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023643_3_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017136">
        <property type="term" value="F:histone deacetylase activity, NAD-dependent"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1600.10">
        <property type="entry name" value="SIR2/SIRT2 'Small Domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1220">
        <property type="entry name" value="TPP-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01968">
        <property type="entry name" value="Sirtuin_ClassU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050134">
        <property type="entry name" value="NAD-dep_sirtuin_deacylases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003000">
        <property type="entry name" value="Sirtuin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026591">
        <property type="entry name" value="Sirtuin_cat_small_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028628">
        <property type="entry name" value="Sirtuin_class_U"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026590">
        <property type="entry name" value="Ssirtuin_cat_dom"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001753">
        <property type="entry name" value="PRK00481.1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF040867">
        <property type="entry name" value="prot_deacyl_CobB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11085:SF11">
        <property type="entry name" value="NAD-DEPENDENT PROTEIN DEACETYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11085">
        <property type="entry name" value="NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02146">
        <property type="entry name" value="SIR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="DHS-like NAD/FAD-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50305">
        <property type="entry name" value="SIRTUIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 8" id="KW-0520">NAD</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="5 8" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="2 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 8 9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Deacetylase sirtuin-type" evidence="10">
        <location>
            <begin position="1"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8 9">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="38"/>
        </location>
        <ligand>
            <name>nicotinamide</name>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>nicotinamide</name>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>nicotinamide</name>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="217"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="234"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="250" mass="26859" checksum="88E663A371277607" modified="2008-05-20" version="1">MDIPDEVLDGVADLVARSRCTVALTGAGISTASGIPDFRGPQGLWRTVDSDKFDIAYFRRSPDEVWDLFRLLFTPLLAAVPNPAHYALARLEEAGKLCAVVTQNVDGLHQRAGSRRVVELHGSLKDAVCTKCGARLPLADVVKGRGAPRCPLCGGVLKPDVVFFGEPLPRGALEEALELAETSDVFLAVGTSLTVYPANTLPLRAKRQGAKLVIINAEETALDHLADYVVRGRAEVVLPKLAERVLNTLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAY4</accession>
    <name>B1YAY4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF192 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1766</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351103.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAY4"/>
    <dbReference type="STRING" id="444157.Tneu_1766"/>
    <dbReference type="GeneID" id="6165527"/>
    <dbReference type="KEGG" id="tne:Tneu_1766"/>
    <dbReference type="eggNOG" id="arCOG03115">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1870818_0_0_2"/>
    <dbReference type="OrthoDB" id="6763at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1140">
        <property type="entry name" value="Protein of unknown function DUF192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003795">
        <property type="entry name" value="DUF192"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038695">
        <property type="entry name" value="Saro_0823-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37953">
        <property type="entry name" value="UPF0127 PROTEIN MJ1496"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37953:SF1">
        <property type="entry name" value="UPF0127 PROTEIN MJ1496"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02643">
        <property type="entry name" value="DUF192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="136" mass="14806" checksum="7A6603222C397310" modified="2008-05-20" version="1">MALWLIVGVAIALASPFTNTAVVELDGAKYAVYTADNLARWTIGYMNVTAYDPRGVGAVGMLFVFPKNSTYCFWMKNTYLPLRMVWIAGETVTQSALAAPLDTTPICGYGDKVLELRPDLPPPAVVAVERPRRPGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAY7</accession>
    <name>B1YAY7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1769</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351106.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAY7"/>
    <dbReference type="STRING" id="444157.Tneu_1769"/>
    <dbReference type="GeneID" id="6165668"/>
    <dbReference type="KEGG" id="tne:Tneu_1769"/>
    <dbReference type="eggNOG" id="arCOG01048">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_699463_0_0_2"/>
    <dbReference type="OrthoDB" id="30702at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="377" mass="43531" checksum="C7BDA2BB4406C871" modified="2008-05-20" version="1">MRVLAIGTTGLNMRELAASLERVHGERGRGRLGVYFVEEELKREVDWVSFLDSDDYHWQERVWREAVARAVARVEEEAPDHAILFMNLPYFRKSRFFPAVDIAVVKAYRPDLVVTLMEEAHVVWRRIQLREGREKTGAALRLKDVFAWRTVSILLGDTIARAIGVHNIVTAVKHPAKTIYAMAVEGARPRFYLSFPISLVRGDPEARREIDGFRLEMHRRYHAFDPLTMDERVLKSAKRRGDVAVLEGPERWLLPQGLEPAVGDEPELYPMEIPADQVEEVEADIDNLIRFRDFRFILQSDAVAVYRPFMRRTLHRGVFSEIMYAVNTAHKRVFIYLPPEDRATGMDSPFDPSSVEETPGRFYEAIEKFASRFSVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="88" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAZ5</accession>
    <name>B1YAZ5_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific)</fullName>
            <ecNumber evidence="2">2.5.1.89</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Undecaprenyl diphosphate synthase</fullName>
            <shortName evidence="2">UDS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Undecaprenyl pyrophosphate synthase</fullName>
            <shortName evidence="2">UPP synthase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">uppS</name>
        <name evidence="3" type="ordered locus">Tneu_1777</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>geranylgeranyl diphosphate + 7 isopentenyl diphosphate = tri-trans,hepta-cis-undecaprenyl diphosphate + 7 diphosphate</text>
            <dbReference type="Rhea" id="RHEA:27622"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57533"/>
            <dbReference type="ChEBI" id="CHEBI:60388"/>
            <dbReference type="ChEBI" id="CHEBI:128769"/>
            <dbReference type="EC" id="2.5.1.89"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="2">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.89" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351114.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAZ5"/>
    <dbReference type="STRING" id="444157.Tneu_1777"/>
    <dbReference type="GeneID" id="6165450"/>
    <dbReference type="KEGG" id="tne:Tneu_1777"/>
    <dbReference type="eggNOG" id="arCOG01532">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038505_2_0_2"/>
    <dbReference type="OrthoDB" id="8293at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045547">
        <property type="term" value="F:ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016094">
        <property type="term" value="P:polyprenol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00475">
        <property type="entry name" value="Cis_IPPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1180.10">
        <property type="entry name" value="Decaprenyl diphosphate synthase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01139">
        <property type="entry name" value="ISPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001441">
        <property type="entry name" value="UPP_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018520">
        <property type="entry name" value="UPP_synth-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036424">
        <property type="entry name" value="UPP_synth-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00055">
        <property type="entry name" value="uppS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10291:SF43">
        <property type="entry name" value="DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE COMPLEX SUBUNIT DHDDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10291">
        <property type="entry name" value="DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01255">
        <property type="entry name" value="Prenyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64005">
        <property type="entry name" value="Undecaprenyl diphosphate synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01066">
        <property type="entry name" value="UPP_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2 3" id="KW-0808">Transferase</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="19"/>
            <end position="22"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="64"/>
            <end position="66"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="193"/>
            <end position="195"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="238" mass="28069" checksum="6604A6889C3456DB" modified="2008-05-20" version="1">MWESGSVKIPSHIAVIPDGNRRYAKKAGLDFYHAYKRGVEKVRSFLLWTLELREIRNVTFYALSTENLRRSRLELEILFRIFEEEFRKTLEDPLIHDNRVRIRFIGDRSPLPGRVVKLMEELESVTRNYTSYNLTFALGYGGRAEIVRCVKRLLSGEVKIADINEDTLFQCLDTRDLPNPEPDVVVRTGGEKRLSNFLLYQAAYSELIFLDKLWPEVEREDLAYIVEEYSRRQRRFGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAZ9</accession>
    <name>B1YAZ9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1781</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351118.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAZ9"/>
    <dbReference type="STRING" id="444157.Tneu_1781"/>
    <dbReference type="GeneID" id="6165424"/>
    <dbReference type="KEGG" id="tne:Tneu_1781"/>
    <dbReference type="eggNOG" id="arCOG05642">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2299452_0_0_2"/>
    <dbReference type="OrthoDB" id="26579at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="100" mass="11466" checksum="839D7D98957483C6" modified="2008-05-20" version="1">MQKIIRGKTYIFEGELPEEAATLLEKWGKLAKKGEIAVYSIESGEIRVRKVAEGPTYSARRIHVQPTCGCVLELEELRDFEQMRVSYRVVAKKLCKEHQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBA1</accession>
    <name>B1YBA1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PaREP1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0280</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBA1"/>
    <dbReference type="STRING" id="444157.Tneu_0280"/>
    <dbReference type="KEGG" id="tne:Tneu_0280"/>
    <dbReference type="eggNOG" id="arCOG01871">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_989079_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19136:SF86">
        <property type="entry name" value="ADENOSYLCOBINAMIDE-PHOSPHATE GUANYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19136">
        <property type="entry name" value="MOLYBDENUM COFACTOR GUANYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="ParB/Sulfiredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MobA-like NTP transferase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="273" mass="29909" checksum="D711BE3581CDCC82" modified="2008-05-20" version="1">MAGGRGTRMGDPQKCLRPVCGIPLLFRVAGVLHQLADEIYVVTTPGHVELAQAAERWGLKVIYGSGLGYPQDFPTAARLAPAVVAACDIADLEPRHIQLLATQDVFATAVTPRGYVGLSYLPSADMDRWVEVDVGSLLDVDTPEDLEEAERRCPTAYPLYVDVACLKPHEETLDAALEPQGEIPPIAVDYRTGVVLDGHHRLKALLKHGSAPALLFDYQAVDVNIPREEVVQRALEGRLYPPKTTWHTYRGKHISQIPAAKARPAAKKLRCRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBD6</accession>
    <name>B1YBD6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">EamA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0316</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBD6"/>
    <dbReference type="STRING" id="444157.Tneu_0316"/>
    <dbReference type="KEGG" id="tne:Tneu_0316"/>
    <dbReference type="eggNOG" id="arCOG00271">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033863_4_2_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3730.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037185">
        <property type="entry name" value="EmrE-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22911">
        <property type="entry name" value="ACYL-MALONYL CONDENSING ENZYME-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22911:SF79">
        <property type="entry name" value="MOBA-LIKE NTP TRANSFERASE DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103481">
        <property type="entry name" value="Multidrug resistance efflux transporter EmrE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="144"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="174"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="201"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="234"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="258"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="7"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="145"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="281" mass="29352" checksum="8B7B95A1BF58187B" modified="2008-05-20" version="1">MGNIDLKGVGYGLFSVAAWSTNYLVGRALGTAGVDPLGLTLVRFAIATPVLFLMAGLPRYKGQLKDLAVSGLLGVALFNALLYSSLHFIDAATASLFVVFSSPITYMVGVALRAERASPVRSLGVALSVLGAYLILAPRGSGEALGALMALGSAISWSLYTLRVGRLYRRYSPVEAMAWSSLLGTAAMALALPISNLAIPLQFAPLVVYIALVPGALAYASWNSAVKSMGPSAAYMLPLLPAITSALSWIVLKEPLTSLQMAGMALAVAGVYLANAVRNKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBG9</accession>
    <name>B1YBG9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF973 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1856</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351190.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBG9"/>
    <dbReference type="STRING" id="444157.Tneu_1856"/>
    <dbReference type="GeneID" id="6165697"/>
    <dbReference type="KEGG" id="tne:Tneu_1856"/>
    <dbReference type="eggNOG" id="arCOG03768">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1227700_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009321">
        <property type="entry name" value="DUF973"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06157">
        <property type="entry name" value="DUF973"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="18"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="181"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="227" mass="23613" checksum="4EF6D18473B99B9A" modified="2008-05-20" version="1">MDPRILEIDGVSQLKTGFLYLLISVVVALVGVAAGLLSFFASLSFYPAAGLGSLVGAVAVFVAALVAAVAISLYALFSKIRGGMRILSQVDGGFKICYTGTTLMIVGLLVVVLGLVVGLAAIAAGWASLHMAGPPFGMLSGLITIFIVALIGGVIYFVGEILTFIIGAFKLNGRYNNSLYMVAGILYIIDIALIIAGISGILTLVGHILMYIALRDTLDKLRSPTPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBJ3</accession>
    <name>B1YBJ3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized linocin/CFP29-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1880</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Encapsulin nanocompartment</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBJ3"/>
    <dbReference type="STRING" id="444157.Tneu_1880"/>
    <dbReference type="KEGG" id="tne:Tneu_1880"/>
    <dbReference type="eggNOG" id="arCOG05908">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067492_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140737">
        <property type="term" value="C:encapsulin nanocompartment"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.140.1960">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2320.10">
        <property type="entry name" value="hypothetical protein PF0899 domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007544">
        <property type="entry name" value="ENCAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051429">
        <property type="entry name" value="Encapsulin_nc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003251">
        <property type="entry name" value="Rr_diiron-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37165">
        <property type="entry name" value="PEPTIDASE U56 FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37165:SF1">
        <property type="entry name" value="TYPE 1 ENCAPSULIN SHELL PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04454">
        <property type="entry name" value="Linocin_M18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02915">
        <property type="entry name" value="Rubrerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="Ferritin-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1284">Encapsulin nanocompartment</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rubrerythrin diiron-binding" evidence="3">
        <location>
            <begin position="29"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00033738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00033787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="358" mass="38677" checksum="A4AF813449FE38CD" modified="2008-05-20" version="1">MRPNTVMVFSKNPVDVVREKKFDSLEVADALRLAIIAELDAISLYLQLAKYVEDERVRRVFEDVANEEKTHFGEFLALLKAYDPALAGELKAGAGEVEKLTGIKSGDPPGDGGNRAGEAGGGGWVVKFVEGVRGAAASSRRFRRYLQTIYVGRDADAVGVEAAGAQGSLERAVIPLREVRLRFTISYRGLEEWLSRGGAFPGEEAAARFAYMEDAAVAEALLRGAGRTLEASSWERPGSATAEVARAVAELYRAYVPEPYVLFVSPGRYARLVVVEERTGVMELTRVKSLVREVAVIPQLEDGVALLLSASPAVVDIAVGVDTEVVHLGPDEAGHSFLLRETLAVRIKKPEGVVVLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBK0</accession>
    <name>B1YBK0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Syntaxin domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1887</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBK0"/>
    <dbReference type="STRING" id="444157.Tneu_1887"/>
    <dbReference type="KEGG" id="tne:Tneu_1887"/>
    <dbReference type="eggNOG" id="arCOG03724">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_109669_2_1_2"/>
    <dbReference type="OrthoDB" id="26995at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57997">
        <property type="entry name" value="Tropomyosin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="53"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="172" mass="19768" checksum="D8CDDE823A4FCC7A" modified="2008-05-20" version="1">MWPWGVCYGLHGAVAQEDLRTAVDKVVEKLREGKKLTTKDISLLYLGTIVNELGGIRGEIARLEQRMEEMNKRIDETNKRIDTTNQRIDAVAEIFSMRIDALSQRIEDTNKRIDALADSLNKRIDTVAESLSRRIDETNRRIDALSARIDDVQKTLLEIQRLLMELLKTMQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBL9</accession>
    <name>B1YBL9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_1906</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351240.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBL9"/>
    <dbReference type="STRING" id="444157.Tneu_1906"/>
    <dbReference type="GeneID" id="6164899"/>
    <dbReference type="KEGG" id="tne:Tneu_1906"/>
    <dbReference type="eggNOG" id="arCOG04462">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_164833_2_0_2"/>
    <dbReference type="OrthoDB" id="56303at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1280.10">
        <property type="entry name" value="Phosphoribosylformylglycinamidine synthase subunit PurS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003850">
        <property type="entry name" value="PurS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036604">
        <property type="entry name" value="PurS-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF004450">
        <property type="entry name" value="PRK05783.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34696">
        <property type="entry name" value="PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34696:SF1">
        <property type="entry name" value="PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02700">
        <property type="entry name" value="PurS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82697">
        <property type="entry name" value="PurS-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="84" mass="9441" checksum="0F497F538F5877F3" modified="2008-05-20" version="1">MRYLVYLNIAYKRGIRDPEGEAIQREIFERRGVSAEVRAGKCLIVAVEAATPEEAGERALKLAWDLRLGNPNVHVVEVVKVEHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBW3</accession>
    <name>B1YBW3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hydrogenase formation HypD protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0399</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HypD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBW3"/>
    <dbReference type="STRING" id="444157.Tneu_0399"/>
    <dbReference type="KEGG" id="tne:Tneu_0399"/>
    <dbReference type="eggNOG" id="arCOG04428">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048562_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070025">
        <property type="term" value="F:carbon monoxide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051604">
        <property type="term" value="P:protein maturation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11750">
        <property type="entry name" value="HypD, alpha/beta domain 1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002780">
        <property type="entry name" value="Hyd_form_HypD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042243">
        <property type="entry name" value="HypD_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042244">
        <property type="entry name" value="HypD_2_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00075">
        <property type="entry name" value="hypD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30149:SF0">
        <property type="entry name" value="HYDROGENASE MATURATION FACTOR HYPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30149">
        <property type="entry name" value="HYDROGENASE PROTEIN ASSEMBLY PROTEIN HYPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01924">
        <property type="entry name" value="HypD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005622">
        <property type="entry name" value="Hydrgn_mat_hypD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="404" mass="44468" checksum="0DD229FBFC803C9A" modified="2008-05-20" version="1">MMRKEMAALELAFRRKSKITGMLVQYIRKYAEELKRRDGDYVYKIMDFCGTHEWTIVHFGLRSVLEMAGVDNVELVAGPGCPVCVTPSYYLEEAIKLAFEGVVVYTYGDVFRLPALQRVRGARSLAEAKAMGADVRLIHTFLHAAIDAKKHNKPSLFLGIGFETVAPGYSEAILRGLVPPNLKLMSLVKLTPPAMFYALDMVKEKPTDYPISGVIAPGHVSTIVGGKAWAPVAEQYRIPVVVSGFEPNDVLTAVAEILKQIKNGEHKVVIEYTRAVKWEGDLKAQSSINTVFETVDTAWRGIGYIPKSGLALREQFKQYDAFAHFGIPDLTPERWRYDLPPGCKCAEVNLGKAKPTDCPLFMKACTPDHPVGPCMVSVEGTCAIWARFGGGGLALEVAKEVGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBW6</accession>
    <name>B1YBW6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Ni,Fe-hydrogenase maturation factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0402</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349770.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBW6"/>
    <dbReference type="STRING" id="444157.Tneu_0402"/>
    <dbReference type="GeneID" id="6164849"/>
    <dbReference type="KEGG" id="tne:Tneu_0402"/>
    <dbReference type="eggNOG" id="arCOG06056">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1665596_0_0_2"/>
    <dbReference type="OrthoDB" id="25399at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1450">
        <property type="entry name" value="HybD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023430">
        <property type="entry name" value="Pept_HybD-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53163">
        <property type="entry name" value="HybD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="155" mass="16928" checksum="4DA74DF0C97B8B44" modified="2008-05-20" version="1">MRVLVGYIGYLFKGDCAVGLRAGELLRGRGVEAVELSGDVFTMVDELMKLKPEKLILVGAAQRGRRPGAVEVYKFTPRSFGSPLEINDALRPSLEGRISLEDLLIGLSVLGRPTDEIYVVECEPPRPDPVVGLSPEGEKCAEELAKRAEELYVQA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="90" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC14</accession>
    <name>RADA_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA repair and recombination protein RadA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">radA</name>
        <name type="ordered locus">Tneu_1953</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the eukaryotic RecA-like protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351287.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC14"/>
    <dbReference type="SMR" id="B1YC14"/>
    <dbReference type="STRING" id="444157.Tneu_1953"/>
    <dbReference type="GeneID" id="6164602"/>
    <dbReference type="KEGG" id="tne:Tneu_1953"/>
    <dbReference type="eggNOG" id="arCOG00415">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041732_0_0_2"/>
    <dbReference type="OrthoDB" id="31129at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd19515">
        <property type="entry name" value="archRadA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:002052">
        <property type="entry name" value="DNA repair protein RAD51 homolog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.20">
        <property type="entry name" value="5' to 3' exonuclease, C-terminal subdomain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00348">
        <property type="entry name" value="RadA_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011938">
        <property type="entry name" value="DNA_recomb/repair_RadA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016467">
        <property type="entry name" value="DNA_recomb/repair_RecA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010995">
        <property type="entry name" value="DNA_repair_Rad51/TF_NusA_a-hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013632">
        <property type="entry name" value="Rad51_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020588">
        <property type="entry name" value="RecA_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020587">
        <property type="entry name" value="RecA_monomer-monomer_interface"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003301">
        <property type="entry name" value="PRK04301.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02236">
        <property type="entry name" value="recomb_radA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22942:SF30">
        <property type="entry name" value="MEIOTIC RECOMBINATION PROTEIN DMC1_LIM15 HOMOLOG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22942">
        <property type="entry name" value="RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14520">
        <property type="entry name" value="HHH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08423">
        <property type="entry name" value="Rad51"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005856">
        <property type="entry name" value="Rad51"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47794">
        <property type="entry name" value="Rad51 N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50162">
        <property type="entry name" value="RECA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50163">
        <property type="entry name" value="RECA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0227">DNA damage</keyword>
    <keyword id="KW-0233">DNA recombination</keyword>
    <keyword id="KW-0238">DNA-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000120513" description="DNA repair and recombination protein RadA">
        <location>
            <begin position="1"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="124"/>
            <end position="131"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00348"/>
        </source>
    </evidence>
    <sequence length="330" mass="36580" checksum="38AFD507479393B5" modified="2008-05-20" version="1">MSSRKKKDAEVAQASVEVNPDLDVEELEGVGRVTGAKLKERGFFTVRDVAFASVKELAEVVGNEERALQIVEAARKMLGLHSFVSALEVYERRKTIRRISTGVKALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQMILVDQAKSIIKQNNVALLVVDSVIAHFRSEFPGRENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPLRPAGGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGLVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC15</accession>
    <name>B1YC15_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1954</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351288.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC15"/>
    <dbReference type="GeneID" id="6164585"/>
    <dbReference type="KEGG" id="tne:Tneu_1954"/>
    <dbReference type="eggNOG" id="arCOG05442">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1297528_0_0_2"/>
    <dbReference type="OrthoDB" id="28717at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="200" mass="22045" checksum="98141507CB9ADF8F" modified="2008-05-20" version="1">MEIVVVGVAEEDVVRAVKEAVEALASPIDVVVVGAEETKLETEDVLLLKVSLPLDVYRVMREAALAKALSDPQLGEVWAVPPEVEPDELAYELSLALLRRLLDALVAERRPDLVVERARPEVVEGDTVAYTLVRTLAVDGSFSLAVAGRTSDALRLLESLSQHPIYGLYRQFWEFAAANFRFLPIYNWLILAASPQGPPR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC21</accession>
    <name>AATE_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">A-type ATP synthase subunit E</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">atpE</name>
        <name type="ordered locus">Tneu_1960</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Component of the A-type ATP synthase that produces ATP from ADP in the presence of a proton gradient across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Has multiple subunits with at least A(3), B(3), C, D, E, F, H, I and proteolipid K(x).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the V-ATPase E subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351294.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC21"/>
    <dbReference type="SMR" id="B1YC21"/>
    <dbReference type="STRING" id="444157.Tneu_1960"/>
    <dbReference type="GeneID" id="6164456"/>
    <dbReference type="KEGG" id="tne:Tneu_1960"/>
    <dbReference type="eggNOG" id="arCOG00869">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1425139_0_0_2"/>
    <dbReference type="OrthoDB" id="26028at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033178">
        <property type="term" value="C:proton-transporting two-sector ATPase complex, catalytic domain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042777">
        <property type="term" value="P:proton motive force-driven plasma membrane ATP synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2320.30">
        <property type="entry name" value="ATP synthase, E subunit, C-terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00311">
        <property type="entry name" value="ATP_synth_E_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038495">
        <property type="entry name" value="ATPase_E_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002842">
        <property type="entry name" value="ATPase_V1_Esu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01991">
        <property type="entry name" value="vATP-synt_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160527">
        <property type="entry name" value="V-type ATPase subunit E-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0066">ATP synthesis</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0375">Hydrogen ion transport</keyword>
    <keyword id="KW-0406">Ion transport</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0813">Transport</keyword>
    <feature type="chain" id="PRO_1000115680" description="A-type ATP synthase subunit E">
        <location>
            <begin position="1"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00311"/>
        </source>
    </evidence>
    <sequence length="190" mass="21634" checksum="34BE53D4EC38524F" modified="2008-05-20" version="1">MSLFEDLINSKIRELEDLKRNLLVNIETNIRREADAALSKFSAQLANVESEATLERERIIYNAVVEARRKIAEVYDQMLKDLVNAVYEEVDKMRGAERYVKFLTSLLETAEKYVQTKDVVIYASPKDKGVVEAVARNLGLTGIVAEKDIRGGVVVTTRDGSITVDYSLESLIANKIEELKHLLYQMTYER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC45</accession>
    <name>B1YC45_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1984</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351318.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC45"/>
    <dbReference type="STRING" id="444157.Tneu_1984"/>
    <dbReference type="GeneID" id="6165606"/>
    <dbReference type="KEGG" id="tne:Tneu_1984"/>
    <dbReference type="eggNOG" id="arCOG05445">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2695919_0_0_2"/>
    <dbReference type="OrthoDB" id="26573at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="73" mass="8648" checksum="6F5141C36BD4FEF7" modified="2008-05-20" version="1">MIITTVGNVIEMLLRRQETITSEDVKLLLKRANIQISDAELIKALMVLEIYKKIHVRRVKREGREVYQISKRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC57</accession>
    <name>B1YC57_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Electron transfer flavoprotein alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1997</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ETF alpha-subunit/FixB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351330.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC57"/>
    <dbReference type="STRING" id="444157.Tneu_1997"/>
    <dbReference type="GeneID" id="6165683"/>
    <dbReference type="KEGG" id="tne:Tneu_1997"/>
    <dbReference type="eggNOG" id="arCOG00447">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034178_1_1_2"/>
    <dbReference type="OrthoDB" id="307696at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033539">
        <property type="term" value="P:fatty acid beta-oxidation using acyl-CoA dehydrogenase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01715">
        <property type="entry name" value="ETF_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1220">
        <property type="entry name" value="TPP-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014730">
        <property type="entry name" value="ETF_a/b_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001308">
        <property type="entry name" value="ETF_a/FixB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033947">
        <property type="entry name" value="ETF_alpha_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014731">
        <property type="entry name" value="ETF_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018206">
        <property type="entry name" value="ETF_asu_C_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43153">
        <property type="entry name" value="ELECTRON TRANSFER FLAVOPROTEIN ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43153:SF1">
        <property type="entry name" value="ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01012">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00766">
        <property type="entry name" value="ETF_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000089">
        <property type="entry name" value="Electra_flavoP_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00893">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="DHS-like NAD/FAD-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00696">
        <property type="entry name" value="ETF_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Electron transfer flavoprotein alpha/beta-subunit N-terminal" evidence="6">
        <location>
            <begin position="17"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="352" mass="38129" checksum="7BFBE3253E19B694" modified="2008-05-20" version="1">MTCTLWPQINKEEFRGVWVYLERDGNRLKDVGLELLGKARELAGKLGDVEVGAVLIAGTEEMAREAIYHGADKVVLVEGPHLDVYSPVEYGEAVAQVLSKYKPEIFLVGATKRGRELAPYVAALLTTGITADCTALDVEPETRDLLQIAPAFGGSQIVTIKTPQRRPQIATVRPSVFPKPPRDVGRKGEIAVERVEVRRRTRLLSAERRVGKDIADLPPVESADVVIGGGRGVGSAEGFKMLTELAKLLGGSLGATLTAVRAGWAPESRLIGQTGKVIRPKLYIAVGVSGAVQHLVGIIESKVIIAINPDPQAPIMNYADYAVVGDYREIIPLLIEELRNVKTRQPEPPSQK</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC69</accession>
    <name>RFCL_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Replication factor C large subunit</fullName>
            <shortName evidence="1">RFC large subunit</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Clamp loader large subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rfcL</name>
        <name type="ordered locus">Tneu_2009</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heteromultimer composed of small subunits (RfcS) and large subunits (RfcL).</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the activator 1 small subunits family. RfcL subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351342.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC69"/>
    <dbReference type="SMR" id="B1YC69"/>
    <dbReference type="STRING" id="444157.Tneu_2009"/>
    <dbReference type="GeneID" id="6165705"/>
    <dbReference type="KEGG" id="tne:Tneu_2009"/>
    <dbReference type="eggNOG" id="arCOG00470">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027255_1_1_2"/>
    <dbReference type="OrthoDB" id="8658at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003689">
        <property type="term" value="F:DNA clamp loader activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd18140">
        <property type="entry name" value="HLD_clamp_RFC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01508">
        <property type="entry name" value="RfcL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023935">
        <property type="entry name" value="Rep_factor-C_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047854">
        <property type="entry name" value="RFC_lid"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003229">
        <property type="entry name" value="PRK04195.1-5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23389">
        <property type="entry name" value="CHROMOSOME TRANSMISSION FIDELITY FACTOR 18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23389:SF6">
        <property type="entry name" value="REPLICATION FACTOR C SUBUNIT 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21960">
        <property type="entry name" value="RCF1-5-like_lid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0235">DNA replication</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000195422" description="Replication factor C large subunit">
        <location>
            <begin position="1"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="63"/>
            <end position="70"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01508"/>
        </source>
    </evidence>
    <sequence length="422" mass="47984" checksum="C9C0516C9694EBC0" modified="2008-05-20" version="1">MGIPWVEKYRPKAFSEIVNQEEAKTLLASWICARFRAPKEFCARWAKKREKEVAEAKAVLLAGPPGIGKTTVVHALAREIRYELIELNASDIRTGERIKLVVGRGLKESSLFGYEGKLVLFDEVDGLHVKEDEGGLEAIVEIVETAKVPIVMTANNPYDPKFRPLRDISLVVNLKRLSEEEVVEVLRRICTAEGAKCEEEALRSIAKSSLGDLRAAINDLQMYLSGGRKTLTVDDIKRVGERNPQLSMFEVLDRVYRARWFDEARAVSFNPSFDWEQYFLWALETVPVVYKDVETAAAAYDRLSKADMFLGRIKRMQEWELLPYALELALGGVSQVKNKPRLPPFIKYGFPQRLLLLAKSREARRRREALVEYLAQNLHISRSLARSDIIYVLSALARRDPKVVERLSRALGINAIDVKNLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCB0</accession>
    <name>B1YCB0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">dTDP-4-dehydrorhamnose 3,5-epimerase</fullName>
            <ecNumber evidence="3">5.1.3.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Thymidine diphospho-4-keto-rhamnose 3,5-epimerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0476</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>dTDP-4-dehydro-6-deoxy-alpha-D-glucose = dTDP-4-dehydro-beta-L-rhamnose</text>
            <dbReference type="Rhea" id="RHEA:16969"/>
            <dbReference type="ChEBI" id="CHEBI:57649"/>
            <dbReference type="ChEBI" id="CHEBI:62830"/>
            <dbReference type="EC" id="5.1.3.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Carbohydrate biosynthesis; dTDP-L-rhamnose biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.13" evidence="3"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349843.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCB0"/>
    <dbReference type="STRING" id="444157.Tneu_0476"/>
    <dbReference type="GeneID" id="6166101"/>
    <dbReference type="KEGG" id="tne:Tneu_0476"/>
    <dbReference type="eggNOG" id="arCOG04188">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090940_1_1_2"/>
    <dbReference type="OrthoDB" id="2990at2157"/>
    <dbReference type="UniPathway" id="UPA00124"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008830">
        <property type="term" value="F:dTDP-4-dehydrorhamnose 3,5-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019305">
        <property type="term" value="P:dTDP-rhamnose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00438">
        <property type="entry name" value="cupin_RmlC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="entry name" value="Jelly Rolls"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000888">
        <property type="entry name" value="RmlC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01221">
        <property type="entry name" value="rmlC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21047">
        <property type="entry name" value="DTDP-6-DEOXY-D-GLUCOSE-3,5 EPIMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21047:SF2">
        <property type="entry name" value="THYMIDINE DIPHOSPHO-4-KETO-RHAMNOSE 3,5-EPIMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00908">
        <property type="entry name" value="dTDP_sugar_isom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="RmlC-like cupins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <feature type="site" description="Participates in a stacking interaction with the thymidine ring of dTDP-4-oxo-6-deoxyglucose" evidence="2">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR600888-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR600888-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU364069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="187" mass="21541" checksum="4FB54E58E0DC6501" modified="2008-05-20" version="1">MPFRSFKRLEIPDVILIEPVVFPDQRGFFAELYKRTDFLAGGVPYDFVQVSVSMSRRGVVRGLHYQLKPAEQGKLVTVLRGRVLDVAVDVRRGSPWFGRYVAVELSADEPRLLWIPPGFAHGFQALEDGTLFMYLMTKEYSPQHERCVRWDDPEVGIPWPIGDAILSEKDRRCPPLREAETNFEYPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCB3</accession>
    <name>B1YCB3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glucose-1-phosphate thymidyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0479</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCB3"/>
    <dbReference type="STRING" id="444157.Tneu_0479"/>
    <dbReference type="KEGG" id="tne:Tneu_0479"/>
    <dbReference type="eggNOG" id="arCOG00667">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029499_0_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="entry name" value="Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005908">
        <property type="entry name" value="G1P_thy_trans_l"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01208">
        <property type="entry name" value="rmlA_long"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42883">
        <property type="entry name" value="GLUCOSE-1-PHOSPHATE THYMIDYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42883:SF2">
        <property type="entry name" value="THYMIDYLYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="Nucleotide-diphospho-sugar transferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nucleotidyl transferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="320" mass="35180" checksum="14EAB678D2390AD7" modified="2008-05-20" version="1">MIEYPIVHLAEAGVSEVGVVVGYLGHLIQEHLGDGSRLGVRVRYFWQERRLGIAHAISLALPELKGPFVVYLGDNILAGGIKRHVRAFLEGDFDVYILLARVPDPSRFGVAVLRDGRVVKLVEKPREPISDLAVVGVYMFRDPEDVARAFSSLKPSWRGEYEVTDLIQWFIDRGRRVGFDFVDGWWKDVGTPEGLLEAVYLLLDHAGARVEGEVRGEVLGRVVVEKGAVVEGRVFGPAYVGPGAYVGRGAVVEHYVSLESGARLASGGASRSLLLSEAEVEVGGLRLVDSVLGRRSVVRSRRDLRGEARLIISDFSRVEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCB9</accession>
    <name>B1YCB9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl transferase group 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0485</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349852.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCB9"/>
    <dbReference type="STRING" id="444157.Tneu_0485"/>
    <dbReference type="CAZy" id="GT4">
        <property type="family name" value="Glycosyltransferase Family 4"/>
    </dbReference>
    <dbReference type="GeneID" id="6165943"/>
    <dbReference type="KEGG" id="tne:Tneu_0485"/>
    <dbReference type="eggNOG" id="arCOG01403">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009583_2_2_2"/>
    <dbReference type="OrthoDB" id="29298at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03801">
        <property type="entry name" value="GT4_PimA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050194">
        <property type="entry name" value="Glycosyltransferase_grp1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45947">
        <property type="entry name" value="SULFOQUINOVOSYL TRANSFERASE SQD2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45947:SF3">
        <property type="entry name" value="SULFOQUINOVOSYL TRANSFERASE SQD2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyltransferase subfamily 4-like N-terminal" evidence="2">
        <location>
            <begin position="15"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyl transferase family 1" evidence="1">
        <location>
            <begin position="182"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="366" mass="41852" checksum="99852B5788757090" modified="2008-05-20" version="1">MKIAYFTNYITYHTGGPRFLMQIAEGMAQRGHEVAVITGATYDRTPPNIKVVDLRIYRGGLLPYMQPLNVIRYLRKATSILRDMGDHYDVVHTDSHFPNLLPLLSPNKTPKVCSIYHFESPDVITGVAPRVGLPLVQLAETNSTCTAIHVLSRSVKRQVERLRLLRNPIYVIPPGIYAEKYRKYTRRPEEGLYLMVGRLEPRKHYDHAIAAFRIVKEVKPNYRLLIVGDGPQRAELEKLIKRLGLERTVHLLGRITEEEKLDLMSRAAALIHLGYPEGFGIAILEAIAMGTPVITYDIPPLNELAIPDVTGIVIPKDDVMTLAKTILEFDLQKYNESRLRNLAQRFDIENIIKQFEKLYYKLIEKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCC0</accession>
    <name>B1YCC0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl transferase group 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0486</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCC0"/>
    <dbReference type="STRING" id="444157.Tneu_0486"/>
    <dbReference type="CAZy" id="GT4">
        <property type="family name" value="Glycosyltransferase Family 4"/>
    </dbReference>
    <dbReference type="KEGG" id="tne:Tneu_0486"/>
    <dbReference type="eggNOG" id="arCOG01403">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_803199_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03801">
        <property type="entry name" value="GT4_PimA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2000">
        <property type="entry name" value="Glycogen Phosphorylase B"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12526">
        <property type="entry name" value="GLYCOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53756">
        <property type="entry name" value="UDP-Glycosyltransferase/glycogen phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycosyltransferase subfamily 4-like N-terminal" evidence="2">
        <location>
            <begin position="15"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="Glycosyl transferase family 1" evidence="1">
        <location>
            <begin position="182"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="345" mass="39797" checksum="EF14055F615240C7" modified="2008-05-20" version="1">MHICYIHTNLWPYTYGGAELRHYLFAKELSKMGYKVTYITYDWGPTDIPTATVGPPPPLYDREGRRDIINTVKFSYAAAKKAKNLRCDKIDVTVPYLPAYLLPREKIILTYWEFWGDKWKDYYGRILGRMVMWGEKAIIKRAPLVITATKIVANQVFRYNRNTAIIPVGLNLDHYLVYRSHNKTYDLAYVARLVPYKGLDVLIEVLNAVGEKLRVLIIGDGPLRDRLAAEIKRMRHEVEWRRNVAEEDKRRLLAQAKIYLNLSKTEGFSIATLEAIALGAYPIVLDAEGYNAAREIVENLNYGYVAKTPAEVVKAIEEARPSPLEPEKLMQYHISNVVQQYIRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="106" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCI0</accession>
    <name>B1YCI0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0550</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349913.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCI0"/>
    <dbReference type="STRING" id="444157.Tneu_0550"/>
    <dbReference type="GeneID" id="6165748"/>
    <dbReference type="KEGG" id="tne:Tneu_0550"/>
    <dbReference type="eggNOG" id="arCOG00231">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_2"/>
    <dbReference type="OrthoDB" id="31298at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035435">
        <property type="term" value="P:phosphate ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03260">
        <property type="entry name" value="ABC_PstB_phosphate_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005670">
        <property type="entry name" value="PstB-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43423">
        <property type="entry name" value="ABC TRANSPORTER I FAMILY MEMBER 17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43423:SF1">
        <property type="entry name" value="ABC TRANSPORTER I FAMILY MEMBER 17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="4"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="250" mass="28254" checksum="7678C33344138C70" modified="2008-05-20" version="1">MSKIEARGLRVSFGQTQVIAGVDLSIPDRSITALMGPSGSGKSTLLRVFNRLIELYPEARVAGEAYLDGRDIFKMDVVELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLAKSRRELQERVRWALEKAQLWDEVKDRLGAPAGKLSGGQQQRLCMARALAFQPEVLLADEPTANLDPENTAKIEALFLELKKDMAIVMVTHFPQQAARISDYVAFLYRGQIVEWGATRDIFTNPKHELTERYVTGRLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCL5</accession>
    <name>B1YCL5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0589</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349948.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCL5"/>
    <dbReference type="STRING" id="444157.Tneu_0589"/>
    <dbReference type="GeneID" id="6165603"/>
    <dbReference type="KEGG" id="tne:Tneu_0589"/>
    <dbReference type="eggNOG" id="arCOG03648">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_160445_0_0_2"/>
    <dbReference type="OrthoDB" id="31224at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="110" mass="12571" checksum="57D3CDCA869A6C79" modified="2008-05-20" version="1">MDCLRQTIEKFRTVFGAEALVDILQAEPRAITARFHGNMCYTCGTVDYFEDFAAMYSECAGEDWTVESYRQNPDGSYTAVLKPRSEVKTRKRHIKVIIAGEEIDYTVETT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCN0</accession>
    <name>B1YCN0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0604</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349963.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCN0"/>
    <dbReference type="STRING" id="444157.Tneu_0604"/>
    <dbReference type="GeneID" id="6165478"/>
    <dbReference type="KEGG" id="tne:Tneu_0604"/>
    <dbReference type="eggNOG" id="arCOG07747">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_185779_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="74" mass="8074" checksum="B13BC51A5727B7FC" modified="2008-05-20" version="1">MGAWTYSEIPETELKVILAVYRPRCHLCGARLTPTNAGYIRIGQAVELALCGQCLRDYVEYVSEVVKAAVAADG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="68" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCQ8</accession>
    <name>B1YCQ8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Miro domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0632</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349991.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCQ8"/>
    <dbReference type="STRING" id="444157.Tneu_0632"/>
    <dbReference type="GeneID" id="6165442"/>
    <dbReference type="KEGG" id="tne:Tneu_0632"/>
    <dbReference type="eggNOG" id="arCOG00364">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144586_0_0_2"/>
    <dbReference type="OrthoDB" id="377869at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00882">
        <property type="entry name" value="Ras_like_GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G" evidence="1">
        <location>
            <begin position="7"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="167" mass="18478" checksum="11F3C25C6870EFB1" modified="2008-05-20" version="1">MRCLLAVVLGVGGVGKTTYIYRLVGVPVQPKTTLRPGIYRWSLEGIPLCIVDIPGDKALEVADALARAWPFYFDLAVFMYDVTDVNTLHALLEINSHLRGRLVKPYRRSVVVGNKVDLAGPLVRGEEVARAVEAVGVFYISALRDSYDKVVEPIRAGLRELNLKVSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="103" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCU3</accession>
    <name>B1YCU3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11 12">Uracil phosphoribosyltransferase</fullName>
            <ecNumber evidence="3 11 12">2.4.2.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">UMP pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">UPRTase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">upp</name>
        <name evidence="14" type="ordered locus">Tneu_0667</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="14" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>UMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + uracil</text>
            <dbReference type="Rhea" id="RHEA:13017"/>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Binds 1 Mg(2+) ion per subunit. The magnesium is bound as Mg-PRPP.</text>
    </comment>
    <comment type="activity regulation">
        <text evidence="11">Allosterically activated by GTP.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 11">Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uracil: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the UPRTase family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.9" evidence="3 11 12"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350026.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCU3"/>
    <dbReference type="STRING" id="444157.Tneu_0667"/>
    <dbReference type="GeneID" id="6165106"/>
    <dbReference type="KEGG" id="tne:Tneu_0667"/>
    <dbReference type="eggNOG" id="arCOG04128">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067096_2_0_2"/>
    <dbReference type="OrthoDB" id="80352at2157"/>
    <dbReference type="UniPathway" id="UPA00574">
        <property type="reaction ID" value="UER00636"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004845">
        <property type="term" value="F:uracil phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044206">
        <property type="term" value="P:UMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006223">
        <property type="term" value="P:uracil salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01218_A">
        <property type="entry name" value="Upp_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRTase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034331">
        <property type="entry name" value="Upp_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005765">
        <property type="entry name" value="UPRT"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001097">
        <property type="entry name" value="PRK00129.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01091">
        <property type="entry name" value="upp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14681">
        <property type="entry name" value="UPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="PRTase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 11" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="5 11 14" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9 11" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="8 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phosphoribosyltransferase" evidence="13">
        <location>
            <begin position="5"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="30"/>
            <end position="34"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="132"/>
            <end position="140"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>uracil</name>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="201"/>
            <end position="203"/>
        </location>
        <ligand>
            <name>uracil</name>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="202"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="NCBIfam" id="TIGR01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF14681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ACB39606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="210" mass="22875" checksum="53FFEE03F1AA8040" modified="2008-05-20" version="1">MPVKVIDHVYAQYILTQLRNRHTSGTDFRKGLVRLGRIVGYEIVKTFPTREVEVETPLGKAIGIDIVGLDRVVIVQILRAAMPFVEGLLKAFPQARLGVVAARRREEGGSVDVEIFYSKIPHIDGDSVLVADPMLATGITMSKAIEEVYRAGRPGRLIVVSVIATPVGIERVLSKYPEAEVFVVAIDPGLNDKAFIVPGLGDAGDRAFLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCV6</accession>
    <name>B1YCV6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Serine/threonine protein kinase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0680</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350039.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCV6"/>
    <dbReference type="STRING" id="444157.Tneu_0680"/>
    <dbReference type="GeneID" id="6165339"/>
    <dbReference type="KEGG" id="tne:Tneu_0680"/>
    <dbReference type="eggNOG" id="arCOG01182">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_095575_0_0_2"/>
    <dbReference type="OrthoDB" id="86092at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="225" mass="25038" checksum="85F8971193DD1834" modified="2008-05-20" version="1">MAVVETLLLALGGGVEHALGVYKQLRELQLELEVGGTVLVNGVWAVGKGTNSVVFRCRPAVGALELACKLRRGDSSRASLALEGQFLHLANTAGVGPKVYTYSRDVVAYLFVRGVHLDAWWSSAPREKRRAFVEELLWQTYRLDLARISHNELSRLERHVLVEGDRPVIIDFESATLGGGNNLTQAANGLMRLGLRPPVDALRRYKRCLCEDAYREVLRLFLDQL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCW1</accession>
    <name>Y685_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0201 protein Tneu_0685</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Tneu_0685</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0201 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350044.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCW1"/>
    <dbReference type="SMR" id="B1YCW1"/>
    <dbReference type="STRING" id="444157.Tneu_0685"/>
    <dbReference type="GeneID" id="6166256"/>
    <dbReference type="KEGG" id="tne:Tneu_0685"/>
    <dbReference type="eggNOG" id="arCOG01043">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_134829_1_0_2"/>
    <dbReference type="OrthoDB" id="7819at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01112">
        <property type="entry name" value="UPF0201"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002739">
        <property type="entry name" value="PAB1135-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022803">
        <property type="entry name" value="Ribosomal_uL5_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39652">
        <property type="entry name" value="UPF0201 PROTEIN TK1335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39652:SF1">
        <property type="entry name" value="UPF0201 PROTEIN TK1335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01877">
        <property type="entry name" value="RNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55282">
        <property type="entry name" value="RL5-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000137121" description="UPF0201 protein Tneu_0685">
        <location>
            <begin position="1"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01112"/>
        </source>
    </evidence>
    <sequence length="143" mass="15810" checksum="85D982BEA9746BB8" modified="2008-05-20" version="1">MKVEAVVEVRYTEDKAKVLKALENVFTPKRVEERESDSGMLLVASCEGAGCLEKLRSAIWRQGIQDAARSVLSKGVVGEDTVVFSVNKQAAYVGVVSFVTEPGESPLGPITFTVKTNNVRQFLDWLAPRTYRGRVYYEAPPPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCX5</accession>
    <name>B1YCX5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NMD3 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0699</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350058.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCX5"/>
    <dbReference type="STRING" id="444157.Tneu_0699"/>
    <dbReference type="GeneID" id="6165395"/>
    <dbReference type="KEGG" id="tne:Tneu_0699"/>
    <dbReference type="eggNOG" id="arCOG04149">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065087_1_1_2"/>
    <dbReference type="OrthoDB" id="15051at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043023">
        <property type="term" value="F:ribosomal large subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039768">
        <property type="entry name" value="Nmd3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007064">
        <property type="entry name" value="Nmd3_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12746:SF2">
        <property type="entry name" value="60S RIBOSOMAL EXPORT PROTEIN NMD3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12746">
        <property type="entry name" value="NONSENSE-MEDIATED MRNA DECAY PROTEIN 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04981">
        <property type="entry name" value="NMD3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nmd3 N-terminal" evidence="1">
        <location>
            <begin position="6"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="289" mass="33039" checksum="C63E80A05BA323BC" modified="2008-05-20" version="1">MAKVPCPYCGRLVDRLVEGMCEDCYFERHPLVTLREARVLRCKYCGAVFLRGRWLRPGKGGEKELMAKVLAEKASLSGVVEDLAVREGDGGVELEVTVRGSPHPSIQPRVYTYKLKLELIYDLCISCREMLSRREVALLQIRAAPGELTDDMRKKILSIIEQELFKLKDKKIGFISNIKYIRTGLDIYTTSTNLARHLAYVIHRSFPSHVVETAKAVGVKDGRRIYHMTYLIRIATYKPGDAVKLRGRDMVVVDVDSKYVHLQNRETKEVERIPIEDIFTKEVVYLGHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCZ8</accession>
    <name>B1YCZ8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cobalamin adenosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0722</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCZ8"/>
    <dbReference type="STRING" id="444157.Tneu_0722"/>
    <dbReference type="KEGG" id="tne:Tneu_0722"/>
    <dbReference type="eggNOG" id="arCOG00489">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1514696_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1200.10">
        <property type="entry name" value="Cobalamin adenosyltransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016030">
        <property type="entry name" value="CblAdoTrfase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036451">
        <property type="entry name" value="CblAdoTrfase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01923">
        <property type="entry name" value="Cob_adeno_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89028">
        <property type="entry name" value="Cobalamin adenosyltransferase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cobalamin adenosyltransferase-like" evidence="4">
        <location>
            <begin position="13"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="176" mass="19828" checksum="4FCB630D855DA596" modified="2008-05-20" version="1">MVLAKPCLMWFSCPGDGGDTLVYWRGEARRARKDDPVVKLYGALDTATTYAHKAANVLQRPQARIMRLAAFSLMELGFYMATGRAEYLDTATALYKRALKLAYAHAPEEPLRSWIACASPECSAVDEARVWIRWAERRAVALGEQAVAKLLNQLSNLAFEVMRTLPHIKYRHRDVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD33</accession>
    <name>B1YD33_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Endonuclease NucS</fullName>
            <ecNumber evidence="6">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nucS</name>
        <name evidence="9" type="ordered locus">Tneu_0757</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Cleaves both 3' and 5' ssDNA extremities of branched DNA structures.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the NucS endonuclease family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD33"/>
    <dbReference type="STRING" id="444157.Tneu_0757"/>
    <dbReference type="KEGG" id="tne:Tneu_0757"/>
    <dbReference type="eggNOG" id="arCOG01304">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069350_1_0_2"/>
    <dbReference type="OrthoDB" id="15177at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000014">
        <property type="term" value="F:single-stranded DNA endodeoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd22341">
        <property type="entry name" value="NucS-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.180.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00722">
        <property type="entry name" value="NucS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002793">
        <property type="entry name" value="Endonuclease_NucS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048301">
        <property type="entry name" value="NucS_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR048302">
        <property type="entry name" value="NucS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR049173">
        <property type="entry name" value="NucS_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003270">
        <property type="entry name" value="PRK04247.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38814">
        <property type="entry name" value="ENDONUCLEASE NUCS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38814:SF1">
        <property type="entry name" value="ENDONUCLEASE NUCS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01939">
        <property type="entry name" value="NucS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF21003">
        <property type="entry name" value="NucS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endonuclease NucS N-terminal PH-like" evidence="8">
        <location>
            <begin position="23"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Endonuclease NucS C-terminal" evidence="7">
        <location>
            <begin position="125"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF21003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="241" mass="26640" checksum="0162C4DAD346553C" modified="2008-05-20" version="1">MFMQNPSAEEAARVVNSGRRRGLAAVVGICEVVYSGRAAAALKPGRRLVIVKRDGTLLVHEAEKAQPKIWNPPGSSTAAYVEGGRLVIKSVRSRPFESVRVYFSTLDFVAAFDVGASELELVGSERDVVEALVKAPWLIEEGLEVLGVEVPTDVGHIDILARDREGRYVVVEVKRDVATHDAVFQLARYVELYRKRGERARGILVASDITAAALEYLRRYGLEFVKVHPRELMALIDKKVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD65</accession>
    <name>B1YD65_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">2-oxoacid oxidoreductase (ferredoxin)</fullName>
            <ecNumber evidence="4">1.2.7.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_0789</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a 2-oxocarboxylate + 2 oxidized [2Fe-2S]-[ferredoxin] + CoA = an acyl-CoA + 2 reduced [2Fe-2S]-[ferredoxin] + CO2 + H(+)</text>
            <dbReference type="Rhea" id="RHEA:42316"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="EC" id="1.2.7.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heterodimer composed of an alpha and a beta subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the transketolase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.11" evidence="4"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350148.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD65"/>
    <dbReference type="STRING" id="444157.Tneu_0789"/>
    <dbReference type="GeneID" id="6164547"/>
    <dbReference type="KEGG" id="tne:Tneu_0789"/>
    <dbReference type="eggNOG" id="arCOG01051">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009227_1_1_2"/>
    <dbReference type="OrthoDB" id="6779at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018491">
        <property type="term" value="F:2-oxobutyrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019164">
        <property type="term" value="F:pyruvate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd07033">
        <property type="entry name" value="TPP_PYR_DXS_TK_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.970:FF:000129">
        <property type="entry name" value="Transketolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051157">
        <property type="entry name" value="PDH/Transketolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43825">
        <property type="entry name" value="PYRUVATE DEHYDROGENASE E1 COMPONENT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43825:SF1">
        <property type="entry name" value="TRANSKETOLASE-LIKE PYRIMIDINE-BINDING DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="Thiamin diphosphate-binding fold (THDP-binding)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="TK C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="60"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="Transketolase-like pyrimidine-binding" evidence="8">
        <location>
            <begin position="7"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00048893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB39728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="314" mass="34026" checksum="8C880A33B6032795" modified="2008-05-20" version="1">MLDLEGLTPREALGRALADLGDLRKDVVVLVADTGETTRARFFAERYPERFFNVGIAEQALVGIAAGLALAGFMPYALTFAAFMARAWEQARNSVDRMNLPVRLVGTHAGFADAYDGSSHQMLEDIAIFRVLPNFTVLVPADSCEVYRAVTASAAVKGPVYVRVGRDFHIPTTCGMYDRFEVGRAYVAVEGGDVAIFTTGITLPFAVEAAQLLKDRGISAAVVHFPTVKPLDYAAVEKYASATGAVLTVEEHMVHGGFGSAVAEHLSQTKPAKMAIMGLKSYGRTAKNPQELYQYYGLTPENIAARAEELVRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD90</accession>
    <name>B1YD90_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Large ribosomal subunit protein uL23</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpl23</name>
        <name evidence="8" type="ordered locus">Tneu_0815</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 50S ribosomal subunit. Contacts protein L29.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uL23 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350173.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD90"/>
    <dbReference type="STRING" id="444157.Tneu_0815"/>
    <dbReference type="GeneID" id="6164350"/>
    <dbReference type="KEGG" id="tne:Tneu_0815"/>
    <dbReference type="eggNOG" id="arCOG04072">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037562_4_2_2"/>
    <dbReference type="OrthoDB" id="7751at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.330:FF:000532">
        <property type="entry name" value="50S ribosomal protein L23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01369_A">
        <property type="entry name" value="Ribosomal_uL23_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019985">
        <property type="entry name" value="Ribosomal_uL23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013025">
        <property type="entry name" value="Ribosomal_uL23-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012678">
        <property type="entry name" value="Ribosomal_uL23/eL15/eS24_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001014">
        <property type="entry name" value="Ribosomal_uL23_CS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF011118">
        <property type="entry name" value="PRK14548.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03636">
        <property type="entry name" value="uL23_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11620">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L23A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00276">
        <property type="entry name" value="Ribosomal_L23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54189">
        <property type="entry name" value="Ribosomal proteins S24e, L23 and L15e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00050">
        <property type="entry name" value="RIBOSOMAL_L23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="81" mass="9261" checksum="22E6EC9FFD955F71" modified="2008-05-20" version="1">MIKRFVVTEKALRLAERENKLTVVVDRSATKKQIADEIQRLYNVKVEKVNTVITAAGEKKAYVKLEREYNAIDLLSKLGVL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD95</accession>
    <name>NEP1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribosomal RNA small subunit methyltransferase Nep1</fullName>
            <ecNumber evidence="1">2.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">16S rRNA (pseudouridine-N1-)-methyltransferase Nep1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">nep1</name>
        <name type="ordered locus">Tneu_0820</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a pseudouridine in rRNA + S-adenosyl-L-methionine = an N(1)-methylpseudouridine in rRNA + S-adenosyl-L-homocysteine + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46696"/>
            <dbReference type="Rhea" id="RHEA-COMP:11634"/>
            <dbReference type="Rhea" id="RHEA-COMP:13933"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:74890"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase NEP1 family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350178.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD95"/>
    <dbReference type="SMR" id="B1YD95"/>
    <dbReference type="STRING" id="444157.Tneu_0820"/>
    <dbReference type="GeneID" id="6164459"/>
    <dbReference type="KEGG" id="tne:Tneu_0820"/>
    <dbReference type="eggNOG" id="arCOG04122">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055846_1_3_2"/>
    <dbReference type="OrthoDB" id="7612at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070037">
        <property type="term" value="F:rRNA (pseudouridine) methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070475">
        <property type="term" value="P:rRNA base methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18088">
        <property type="entry name" value="Nep1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.1280.10:FF:000042">
        <property type="entry name" value="Ribosomal RNA small subunit methyltransferase Nep1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00554">
        <property type="entry name" value="NEP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005304">
        <property type="entry name" value="Rbsml_bgen_MeTrfase_EMG1/NEP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023503">
        <property type="entry name" value="Ribosome_NEP1_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12636">
        <property type="entry name" value="NEP1/MRA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12636:SF5">
        <property type="entry name" value="RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE NEP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03587">
        <property type="entry name" value="EMG1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="alpha/beta knot"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0489">Methyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0690">Ribosome biogenesis</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0698">rRNA processing</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <keyword id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000129102" description="Ribosomal RNA small subunit methyltransferase Nep1">
        <location>
            <begin position="1"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="196"/>
            <end position="201"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with substrate rRNA" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <feature type="site" description="Stabilizes Arg-59" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with substrate rRNA" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with substrate rRNA" evidence="1">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with substrate rRNA" evidence="1">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="221" mass="24355" checksum="4A64FC651034123F" modified="2008-05-20" version="1">MILVLAESAIELVPREIWSHPAVASDARRRGKRPGEILLDRARHHPAMAGLEDGARRGRPDIVHQVLLVFQYSLLNRRGLGRVYIHTRGDYIIQVKPQTRIPKNYNNFVSLMEQLYALGRAPPHGDSLMELHRGSLAGLLEQLGGRWVVLHERGARRRFAELGAALLNSVVVVGGFPHGDFSNRWVLEKAEAVYSVGDEPLDAAQAVCRAVAAAEASAGLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="101" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD99</accession>
    <name>B1YD99_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">Ornithine carbamoyltransferase</fullName>
            <ecNumber evidence="2 6">2.1.3.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_0825</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4 5">
            <text>carbamoyl phosphate + L-ornithine = L-citrulline + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19513"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="EC" id="2.1.3.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.3" evidence="2 6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350182.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD99"/>
    <dbReference type="STRING" id="444157.Tneu_0825"/>
    <dbReference type="GeneID" id="6164317"/>
    <dbReference type="KEGG" id="tne:Tneu_0825"/>
    <dbReference type="eggNOG" id="arCOG00912">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043846_3_2_2"/>
    <dbReference type="OrthoDB" id="4696at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016597">
        <property type="term" value="F:amino acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004585">
        <property type="term" value="F:ornithine carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019240">
        <property type="term" value="P:citrulline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:L-arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.1370:FF:000008">
        <property type="entry name" value="Ornithine carbamoyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1370">
        <property type="entry name" value="Aspartate/ornithine carbamoyltransferase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01109">
        <property type="entry name" value="OTCase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006132">
        <property type="entry name" value="Asp/Orn_carbamoyltranf_P-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006130">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036901">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006131">
        <property type="entry name" value="Asp_carbamoyltransf_Asp/Orn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002292">
        <property type="entry name" value="Orn/put_carbamltrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024904">
        <property type="entry name" value="OTCase_ArgI"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00658">
        <property type="entry name" value="orni_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001986">
        <property type="entry name" value="PRK00779.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45753">
        <property type="entry name" value="ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45753:SF3">
        <property type="entry name" value="ORNITHINE TRANSCARBAMYLASE, MITOCHONDRIAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00185">
        <property type="entry name" value="OTCace"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02729">
        <property type="entry name" value="OTCace_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00100">
        <property type="entry name" value="AOTCASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00102">
        <property type="entry name" value="OTCASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53671">
        <property type="entry name" value="Aspartate/ornithine carbamoyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00097">
        <property type="entry name" value="CARBAMOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aspartate/ornithine carbamoyltransferase carbamoyl-P binding" evidence="9">
        <location>
            <begin position="2"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="Aspartate/ornithine carbamoyltransferase Asp/Orn-binding" evidence="8">
        <location>
            <begin position="150"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="52"/>
            <end position="55"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="130"/>
            <end position="133"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="228"/>
            <end position="229"/>
        </location>
        <ligand>
            <name>L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="264"/>
            <end position="265"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="292"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00048772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="NCBIfam" id="TIGR00658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB39762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="306" mass="34154" checksum="0F5985867F08901C" modified="2008-05-20" version="1">MRHLLTLLEYRPHEVEQMLLLSRDFKTQNYGGGGYVQTFAGRIVLLYFEKPSTRTRLSLAAAAAQLGMQAVYVTPNELQLGRGETVADTMRVVSRYAAAVAARVYRHETLEEMARYSSIPVINALSDKHHPLQALADALTLWERAGRLRGLKIAFVGDVSNNVATSLAVIGAKLGWEVRLIGPRPLWNTKIIDELSQDLSTTGGRIYFAESIEEVAGVDGVYTDVWVSMGFEKEAEERRRLLKPYQVNRTVMELAGPRAVFLHCLPAHRGEEVTDDVIDGPQSAVWDQAENRMHTAKAVFAYLLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDA1</accession>
    <name>B1YDA1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoadenosine phosphosulfate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0827</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350184.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDA1"/>
    <dbReference type="STRING" id="444157.Tneu_0827"/>
    <dbReference type="GeneID" id="6164636"/>
    <dbReference type="KEGG" id="tne:Tneu_0827"/>
    <dbReference type="eggNOG" id="arCOG00073">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026622_0_0_2"/>
    <dbReference type="OrthoDB" id="14887at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="CDD" id="cd23947">
        <property type="entry name" value="PAPS_reductase-like_YbdN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002500">
        <property type="entry name" value="PAPS_reduct_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050128">
        <property type="entry name" value="Sulfate_adenylyltrnsfr_sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43196:SF2">
        <property type="entry name" value="PHOSPHOADENOSINE PHOSPHOSULFATE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43196">
        <property type="entry name" value="SULFATE ADENYLYLTRANSFERASE SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01507">
        <property type="entry name" value="PAPS_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52402">
        <property type="entry name" value="Adenine nucleotide alpha hydrolases-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="528"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="559"/>
            <end position="588"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="588" mass="65963" checksum="51D48D816B29F97D" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="75" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDA7</accession>
    <name>B1YDA7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">3-isopropylmalate dehydrogenase</fullName>
            <ecNumber evidence="8">1.1.1.85</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0833</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <dbReference type="EC" id="1.1.1.85" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350190.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDA7"/>
    <dbReference type="STRING" id="444157.Tneu_0833"/>
    <dbReference type="GeneID" id="6164281"/>
    <dbReference type="KEGG" id="tne:Tneu_0833"/>
    <dbReference type="eggNOG" id="arCOG01163">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031953_0_1_2"/>
    <dbReference type="OrthoDB" id="6813at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003862">
        <property type="term" value="F:3-isopropylmalate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.718.10">
        <property type="entry name" value="Isopropylmalate Dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050501">
        <property type="entry name" value="ICDH/IPMDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024084">
        <property type="entry name" value="IsoPropMal-DH-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43275">
        <property type="entry name" value="D-MALATE DEHYDROGENASE [DECARBOXYLATING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43275:SF1">
        <property type="entry name" value="D-MALATE DEHYDROGENASE [DECARBOXYLATING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00180">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01329">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53659">
        <property type="entry name" value="Isocitrate/Isopropylmalate dehydrogenase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0464">Manganese</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="4 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Isopropylmalate dehydrogenase-like" evidence="7">
        <location>
            <begin position="4"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="325" mass="34807" checksum="41F0FBEDDABAB61E" modified="2008-05-20" version="1">MPYKVLVIPGDGIGPEVVEAALYVINAAAAKYGVDLEVKTAEAGDAALRKYGVAMPPETLKLADASDVIFKGPIGESAYDVTSLIRMRYVLYANIRPVKNLPGVPAVRDIDCVFVRENVEDVYVGAEYKVGDVAIALKVITGVGTRRVARVARRYAEMRKRKVTVVHKANVLRVVDAFFRDVALEELKGLEVDQMYVDAAAMELVRNPLRFDVVLTTNQYGDILTDLAAQVAGGLGLAPSGNLGDGKAMFEPVHGAAFDIAGRGIANPIATILSAAMMFEWLGRSDAAQAIRSAVERSILQGVKTPDIGGNSKTAEVGRYIASIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDB1</accession>
    <name>B1YDB1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0837</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350194.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDB1"/>
    <dbReference type="STRING" id="444157.Tneu_0837"/>
    <dbReference type="GeneID" id="6164464"/>
    <dbReference type="KEGG" id="tne:Tneu_0837"/>
    <dbReference type="eggNOG" id="arCOG03751">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_187360_0_0_2"/>
    <dbReference type="OrthoDB" id="26696at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="69" mass="8328" checksum="2C75EF72B827C68F" modified="2008-05-20" version="1">MFRVYINPKEERVLVTKLRVAGEGWVLVTKYATWEKAYRKALYIANKLDYVLEWFLEDQIEEALQVFKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="66" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDC1</accession>
    <name>B1YDC1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0847</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350204.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDC1"/>
    <dbReference type="STRING" id="444157.Tneu_0847"/>
    <dbReference type="GeneID" id="6164617"/>
    <dbReference type="KEGG" id="tne:Tneu_0847"/>
    <dbReference type="eggNOG" id="arCOG01117">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_170329_2_2_2"/>
    <dbReference type="OrthoDB" id="8136at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050684">
        <property type="entry name" value="HTH-Siroheme_Decarb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43413:SF6">
        <property type="entry name" value="REGULATORY PROTEIN ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43413">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR, ASNC FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="Dimeric alpha+beta barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transcription regulator AsnC/Lrp ligand binding" evidence="2">
        <location>
            <begin position="7"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="85" mass="9514" checksum="62D4A25B7ECAC58E" modified="2008-05-20" version="1">MEAIVFLNVDIGSEDRVMEELASIPEVKAVYFVYGPYDIVVKIDAPDIDKVRSIVRERVRKIEGIRSTTTLIVAKSHTKSAPPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDC6</accession>
    <name>B1YDC6_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="2">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Tneu_0852</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350209.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDC6"/>
    <dbReference type="STRING" id="444157.Tneu_0852"/>
    <dbReference type="GeneID" id="6165160"/>
    <dbReference type="KEGG" id="tne:Tneu_0852"/>
    <dbReference type="eggNOG" id="arCOG01180">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018693_3_3_2"/>
    <dbReference type="OrthoDB" id="31344at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106310">
        <property type="term" value="F:protein serine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05145">
        <property type="entry name" value="RIO1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.20">
        <property type="entry name" value="Phosphorylase Kinase, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.510.10">
        <property type="entry name" value="Transferase(Phosphotransferase) domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051272">
        <property type="entry name" value="RIO-type_Ser/Thr_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018934">
        <property type="entry name" value="RIO_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000687">
        <property type="entry name" value="RIO_kinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45723">
        <property type="entry name" value="SERINE/THREONINE-PROTEIN KINASE RIO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01163">
        <property type="entry name" value="RIO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00090">
        <property type="entry name" value="RIO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="Protein kinase-like (PK-like)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 13" id="KW-0418">Kinase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 13" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RIO kinase" evidence="12">
        <location>
            <begin position="9"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00048679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB39789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="266" mass="30010" checksum="0AFB013173B34F4B" modified="2008-05-20" version="1">MGRFRTEKDSDYYKVVDDAINAYTWAAIVKLQERGVVGEVLGPVGQGKEAKIILARRGDAYAVLKVFYPVPVRFVKSRYGYILGDPRFRGLKISDQLHLVETWCRKEFGNLARAHAAGVRAPKPYGFYRNVLAMEFIGVGKTPAPQLVEVGLDGLDDPDHVLSEVLKSLERTYVVAGLVHGDLSPFNILYDGRDPWIIDWGSAVRRGHPKELEYLRRDVERVVEFFGGPAPPEELFKRLVERGAWRGPLDFDGEGWLLIGGRRLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDD2</accession>
    <name>B1YDD2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0858</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350215.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDD2"/>
    <dbReference type="STRING" id="444157.Tneu_0858"/>
    <dbReference type="GeneID" id="6164510"/>
    <dbReference type="KEGG" id="tne:Tneu_0858"/>
    <dbReference type="eggNOG" id="arCOG05692">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_788986_0_0_2"/>
    <dbReference type="OrthoDB" id="27489at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="354" mass="39212" checksum="05515508C11C6E4C" modified="2008-05-20" version="1">MDLKNFIIDNVDRFLEYLKQNPLVIYARRSVDAYLAAYALAAALGETAQVSVVDWPPQAGVCVGFRCEGMYITEWGVGVDDRRFDAGFTSMSHLASVLIQSLSPLEEQIHRSLYAGHYSWSVDYCEYGCPPPREILKGDERLAVAFPFLEKLPARRALSLSTLPIVPGVTGKPAEDSKLASAMGPDEALALLDWALGVVHSEGFHTAVLDKALRLYSPAFAPADFAARVEADLAGFVGRDVELYVQNLADAFYGVVKRGREGVVPMQNPFYVLKIPPYLSYYLRLSGWAALRYDAGRGHVVALVPPRGERDRLAKAAELLGEVGQVLRFPTHLVAYVERDKYADFLKIYEKGFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDF7</accession>
    <name>B1YDF7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Helicase C2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0883</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350240.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDF7"/>
    <dbReference type="STRING" id="444157.Tneu_0883"/>
    <dbReference type="GeneID" id="6164293"/>
    <dbReference type="KEGG" id="tne:Tneu_0883"/>
    <dbReference type="eggNOG" id="arCOG00770">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_691906_0_0_2"/>
    <dbReference type="OrthoDB" id="27512at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016818">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006555">
        <property type="entry name" value="ATP-dep_Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045028">
        <property type="entry name" value="DinG/Rad3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010614">
        <property type="entry name" value="RAD3-like_helicase_DEAD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11472">
        <property type="entry name" value="DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11472:SF34">
        <property type="entry name" value="REGULATOR OF TELOMERE ELONGATION HELICASE 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06733">
        <property type="entry name" value="DEAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13307">
        <property type="entry name" value="Helicase_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00491">
        <property type="entry name" value="HELICc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-dependent helicase C-terminal" evidence="2">
        <location>
            <begin position="260"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="401" mass="45148" checksum="04EA3852EC9FD4F9" modified="2008-05-20" version="1">MRIVVNAPPGYGKSRRIAAVAAGRRKALVFVKSHLEGLQMAKYVEESGGRAGLLFGRRSLCPLGAENAYQCLRLREQGVCKARSGRVEKLIFDVERLYKMGVCPYEAVHVAGRRANVVVLPLAYLSKVSNLAAVADLLEEADLVALDEAHNLLAVIPVRDEELYSRRYCLPGRDAPMCLALPLVGEVVRRARGLIAASASILRRFSSPFTQHLSAQFVEVRRLPGEENLEVDFKPLEFRYRTRMRDAYVEAVAKEVRRLYETYGRVAVFLPNKELASYYMRRLGDVPASDKPLGDIDHVIVTYYGSPVSEGVNLDVKAGVLVGFPIPNIKSRELWLMVEALNRLGYDGYRYAVLFTAVNHVIQAAGRVMRNLQRERKYILLMDDRFTEYKHLLPSYISKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDH3</accession>
    <name>B1YDH3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0899</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350256.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDH3"/>
    <dbReference type="STRING" id="444157.Tneu_0899"/>
    <dbReference type="GeneID" id="6164434"/>
    <dbReference type="KEGG" id="tne:Tneu_0899"/>
    <dbReference type="eggNOG" id="arCOG05703">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1870855_0_0_2"/>
    <dbReference type="OrthoDB" id="27446at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="129" mass="14616" checksum="1BEC2CECE17C4A22" modified="2008-05-20" version="1">MELGEAVDILREKLGSRSFRRAVGATAAEAVETLVKAFEGGCCISQREAVEMLNSFYVFESRLRRLLEIYDRISRGSLRAVAREILGEDLPAEPVDFDLLLKELELYRRYVFSIAERALRCYSSTSSKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="91" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDI1</accession>
    <name>B1YDI1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Large ribosomal subunit protein uL5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpl5</name>
        <name evidence="11" type="ordered locus">Tneu_0907</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">This is 1 of the proteins that bind and probably mediate the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 50S ribosomal subunit; contacts the 5S rRNA and probably tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the universal ribosomal protein uL5 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350264.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDI1"/>
    <dbReference type="STRING" id="444157.Tneu_0907"/>
    <dbReference type="GeneID" id="6164626"/>
    <dbReference type="KEGG" id="tne:Tneu_0907"/>
    <dbReference type="eggNOG" id="arCOG04092">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061015_3_0_2"/>
    <dbReference type="OrthoDB" id="372044at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.1440.10:FF:000002">
        <property type="entry name" value="60S ribosomal protein L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01333_A">
        <property type="entry name" value="Ribosomal_uL5_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002132">
        <property type="entry name" value="Ribosomal_uL5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022804">
        <property type="entry name" value="Ribosomal_uL5_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031309">
        <property type="entry name" value="Ribosomal_uL5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022803">
        <property type="entry name" value="Ribosomal_uL5_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR057266">
        <property type="entry name" value="Ribosomal_uL5_euk/arc-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031310">
        <property type="entry name" value="Ribosomal_uL5_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003258">
        <property type="entry name" value="PRK04219.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11994">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L11-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00281">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00673">
        <property type="entry name" value="Ribosomal_L5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002161">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55282">
        <property type="entry name" value="RL5-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Large ribosomal subunit protein uL5 N-terminal" evidence="9">
        <location>
            <begin position="13"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="Large ribosomal subunit protein uL5 C-terminal" evidence="10">
        <location>
            <begin position="70"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB39844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="179" mass="20171" checksum="DDB891940CBFFF07" modified="2008-05-20" version="1">MPSWKELVLTKGHPMQRIYIEKVVVNIGVGTGGEKLEKAADLLKELTGAEPSKRRAKRSIKDFGIRKGEPIGVAVTLRRDKAVEFLTKALQAVNNRVKRTSFDERGNVCFGIKEHILLPGVKYDPAVGIWGMDVCVKLAKPGLRVQLRRRRRSKVGKRQLVTREEAIEFFQKILGVQVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="57" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDL9</accession>
    <name>B1YDL9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">tRNA (Guanine-N1-)-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0946</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDL9"/>
    <dbReference type="KEGG" id="tne:Tneu_0946"/>
    <dbReference type="eggNOG" id="arCOG00967">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061952_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008175">
        <property type="term" value="F:tRNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030488">
        <property type="term" value="P:tRNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028564">
        <property type="entry name" value="MT_TRM10-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038459">
        <property type="entry name" value="MT_TRM10-typ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR053623">
        <property type="entry name" value="TRM10_methyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016742">
        <property type="entry name" value="tRNA_m1G_mtfrase_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF041071">
        <property type="entry name" value="Trm10_mtase_Thprot"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018978">
        <property type="entry name" value="tRNA_m1G_mtfrase_arc_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51675">
        <property type="entry name" value="SAM_MT_TRM10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SAM-dependent MTase TRM10-type" evidence="4">
        <location>
            <begin position="79"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="322" mass="35697" checksum="A309803FF17B3122" modified="2008-05-20" version="1">MLAPLWRSFFRFLAERGVDSLCLPPHFRCWGDVPQCVAVGVLVGRYAVCRGERRGGRLGMWEGVEVLGGRGAGVCRWVLARRCAGGRLEVDFSPPERPRIVVDLSLWGEHTPGEKHELVEQILATLGAVRRVLWDGNLWVTNAPGEFLELLGLHARGLVHRMNISGGPPPLEKPVVLDPEGDCLFTEEAARSHWEFIIGGIVDKERTAKSGTRRLAELLGVEKRCRIELRGSLVGVPDRINKIAEIVLSALAGVPLEEAILRAQAKRDRVYRLMWEIQRRALRLPDGRLAITRDALAEANWLGAPPGEVELALRKTHAVVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDM2</accession>
    <name>B1YDM2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0950</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350305.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDM2"/>
    <dbReference type="STRING" id="444157.Tneu_0950"/>
    <dbReference type="GeneID" id="6164490"/>
    <dbReference type="KEGG" id="tne:Tneu_0950"/>
    <dbReference type="eggNOG" id="arCOG04234">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_142655_0_0_2"/>
    <dbReference type="OrthoDB" id="45301at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016618">
        <property type="entry name" value="UCP014422"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF014422">
        <property type="entry name" value="UCP014422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="142" mass="15947" checksum="80FC8F3A60BD20B2" modified="2008-05-20" version="1">MRLRPPPRIKVLEALGAVADGRVKVLGPGRCEVVSSEGDRVYRVEVAGGRARSDDNGTVYRGYVGYPIIACLMAEGRLPVDPGLAERLRGVAWRRLNERFGRYEEVLRHIYAERAIDRASAERYIDEVLKLLGEMRLERAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDM5</accession>
    <name>B1YDM5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, PadR-like family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0953</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350308.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDM5"/>
    <dbReference type="STRING" id="444157.Tneu_0953"/>
    <dbReference type="GeneID" id="6164596"/>
    <dbReference type="KEGG" id="tne:Tneu_0953"/>
    <dbReference type="eggNOG" id="arCOG00002">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063440_1_3_2"/>
    <dbReference type="OrthoDB" id="56053at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005149">
        <property type="entry name" value="Tscrpt_reg_PadR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43252">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR YQJI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43252:SF5">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR, PADR-LIKE FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03551">
        <property type="entry name" value="PadR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transcription regulator PadR N-terminal" evidence="1">
        <location>
            <begin position="19"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="141" mass="16061" checksum="2BD54E398753734E" modified="2008-05-20" version="1">MGPPPWAFISRKGLREVALWLLSDRPMNGAELIRAVEEVTWGFWRPSPGSVYPLLRQLEAEGLARRREDGRYELTEAGRRAAKLIPWARGPRLGGPRSVEEVVEELESWALYLADVAATEPERVAPHRERIRKIAEVLQKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDQ1</accession>
    <name>B1YDQ1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Nicotinate-nucleotide pyrophosphorylase [carboxylating]</fullName>
            <ecNumber evidence="5">2.4.2.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Quinolinate phosphoribosyltransferase [decarboxylating]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0979</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in the catabolism of quinolinic acid (QA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>nicotinate beta-D-ribonucleotide + CO2 + diphosphate = quinolinate + 5-phospho-alpha-D-ribose 1-diphosphate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:12733"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:29959"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.19"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from quinolinate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Hexamer formed by 3 homodimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the NadC/ModD family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.19" evidence="5"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350334.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDQ1"/>
    <dbReference type="STRING" id="444157.Tneu_0979"/>
    <dbReference type="GeneID" id="6164382"/>
    <dbReference type="KEGG" id="tne:Tneu_0979"/>
    <dbReference type="eggNOG" id="arCOG01483">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039622_2_0_2"/>
    <dbReference type="OrthoDB" id="115072at2157"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00331"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004514">
        <property type="term" value="F:nicotinate-nucleotide diphosphorylase (carboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD+ biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034213">
        <property type="term" value="P:quinolinate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="3.20.20.70:FF:000030">
        <property type="entry name" value="Nicotinate-nucleotide pyrophosphorylase, carboxylating"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="entry name" value="Aldolase class I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.20">
        <property type="entry name" value="Quinolinate phosphoribosyl transferase, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006242">
        <property type="entry name" value="ModD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027277">
        <property type="entry name" value="NadC/ModD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036068">
        <property type="entry name" value="Nicotinate_pribotase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037128">
        <property type="entry name" value="Quinolinate_PRibosylTase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002638">
        <property type="entry name" value="Quinolinate_PRibosylTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022412">
        <property type="entry name" value="Quinolinate_PRibosylTrfase_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01334">
        <property type="entry name" value="modD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32179">
        <property type="entry name" value="NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING]"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32179:SF4">
        <property type="entry name" value="PYROPHOSPHORYLASE MODD-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01729">
        <property type="entry name" value="QRPTase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02749">
        <property type="entry name" value="QRPTase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006250">
        <property type="entry name" value="NadC_ModD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51690">
        <property type="entry name" value="Nicotinate/Quinolinate PRTase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54675">
        <property type="entry name" value="Nicotinate/Quinolinate PRTase N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="2 5" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Quinolinate phosphoribosyl transferase N-terminal" evidence="7">
        <location>
            <begin position="17"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="domain" description="Quinolinate phosphoribosyl transferase C-terminal" evidence="6">
        <location>
            <begin position="103"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR006250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="272" mass="28860" checksum="8E32375B66A69941" modified="2008-05-20" version="1">MKSRLEAWLLEDLGSYDLTTEVLGIGGLRGVAQLFAREEAVVAGSEEAAEVYKLAGCGEVEVVKRSGQLARRGDVVLRAVGEARCLHAAWRTAQEVVAWASGVATKTRRLVELARRVNPRVVVAATRKTPPGLRALYHKAVLAGGGMVHRCCLSDGVLVFRNHLVFLGEGALQKAAKAVAVRPAGVEVSTVEEAVEAAKAGFSYIQLERMTPEEVAEAAARVRAVNPRVVVGASGGIDEHNIASYAPHVDVVVTSAPYRAPPIDLGTEMAPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDR2</accession>
    <name>B1YDR2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0993</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDR2"/>
    <dbReference type="STRING" id="444157.Tneu_0993"/>
    <dbReference type="KEGG" id="tne:Tneu_0993"/>
    <dbReference type="eggNOG" id="arCOG07423">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_170084_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="105" mass="11648" checksum="E52A48CB57A70928" modified="2008-05-20" version="1">MEPLIYVLSCLVREKYYGPLDRLARVEDSDEFYVTMAMEAVYDALRYFGTLKDCARPEGLEEAVRAFAALVKRRPAVAKEVAFKALAKAVGGERQVVKGQASAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDT6</accession>
    <name>B1YDT6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Secreted endonuclease-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1017</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350369.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDT6"/>
    <dbReference type="GeneID" id="6164944"/>
    <dbReference type="KEGG" id="tne:Tneu_1017"/>
    <dbReference type="eggNOG" id="arCOG05252">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105716_1_1_2"/>
    <dbReference type="OrthoDB" id="29270at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019287">
        <property type="entry name" value="Hday_junct_resolvase-rel_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10107">
        <property type="entry name" value="Endonuc_Holl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Holliday junction resolvase-related" evidence="2">
        <location>
            <begin position="48"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="24"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="215" mass="24624" checksum="DBB1BAECF356ABFF" modified="2008-05-20" version="1">MVEVVLLAALLALSLTAAWLWRSVQALRRALSAAEGRAKALELELAKLQSSVQAAAAEAARRMYEEWRASDLRQLQAQYEAQLEAAKKQMEEQYRQQLELEVKRREEEIRRDAVERSASTILGRVGEQLAPLYLFERYGIEPKDLRFIGSPVDYVAFRGLSRGQVEEVVFIEVKTGKTAALNDAERQVRRAVEAKRVRFEVLHLREEPPYRIDVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDU1</accession>
    <name>B1YDU1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PaREP1 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1023</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350374.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDU1"/>
    <dbReference type="GeneID" id="6164880"/>
    <dbReference type="KEGG" id="tne:Tneu_1023"/>
    <dbReference type="eggNOG" id="arCOG03721">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115256_0_0_2"/>
    <dbReference type="OrthoDB" id="40236at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.330">
        <property type="entry name" value="Nucleotidyltransferases domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010268">
        <property type="entry name" value="PaREP1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34237:SF4">
        <property type="entry name" value="PAREP1 FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34237">
        <property type="entry name" value="PAREP8-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05942">
        <property type="entry name" value="PaREP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="166" mass="18651" checksum="8EC537F1ED60745A" modified="2008-05-20" version="1">MEFVEIKIPKPVYELLSRRGVDVEAEVLDKLLSELDPPEEAAERVRLAERLYAEAVQYVERGDPVQASEKLYKAAEECVKALATWFKTPEAAEARREGRWRTKLLARAAKTLSAVLNQPQINIGWSVAYDLHVHEAALAVEHVKAAAPQIEKLLETARALLRSSHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDU9</accession>
    <name>B1YDU9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1031</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350382.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDU9"/>
    <dbReference type="STRING" id="444157.Tneu_1031"/>
    <dbReference type="GeneID" id="6164907"/>
    <dbReference type="KEGG" id="tne:Tneu_1031"/>
    <dbReference type="eggNOG" id="arCOG05555">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_133610_0_0_2"/>
    <dbReference type="OrthoDB" id="29056at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="180" mass="18923" checksum="E5BBDF5D587716EF" modified="2008-05-20" version="1">MKKLLTVGIVAAVLAAAALAYAGHWGSAYPARWGPGYEPAHYPPTYYGHHPGPPGHVSHLPAARRGGGWLNATLYSTTRQLTISGAGVEASLAVDVVNRNASSPYGAVVYGSGVVKLGDGTYTAKSVYGHVGPYGAELRIYTGRELIYLRYREGSYWAVVKTLGEPGASVYNGTASLKIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDW7</accession>
    <name>B1YDW7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1049</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350400.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDW7"/>
    <dbReference type="STRING" id="444157.Tneu_1049"/>
    <dbReference type="GeneID" id="6164728"/>
    <dbReference type="KEGG" id="tne:Tneu_1049"/>
    <dbReference type="eggNOG" id="arCOG05427">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1640032_0_0_2"/>
    <dbReference type="OrthoDB" id="28567at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="162" mass="18506" checksum="04D2A9BE505525E7" modified="2008-05-20" version="1">MILLIVKTDSGEVAKRLARAVEGLELAPGLYLTWAPREKVARAVNAAKREAVRRWEEEGSGPQLEVAALELTEEQYRELRPLARGVIERAAEALLEEMERLLERLRSPGGRDLSGWYRDLARRYERLVNASIALDIEPTALGRLRDRWKEVALEAGRRLRRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDZ0</accession>
    <name>B1YDZ0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DUF3782 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1072</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350422.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDZ0"/>
    <dbReference type="STRING" id="444157.Tneu_1072"/>
    <dbReference type="GeneID" id="6164699"/>
    <dbReference type="KEGG" id="tne:Tneu_1072"/>
    <dbReference type="eggNOG" id="arCOG01422">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064028_1_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024271">
        <property type="entry name" value="DUF3782"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012431">
        <property type="entry name" value="PDDEXK_10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34314">
        <property type="entry name" value="CRENARCHAEAL PROTEIN, PUTATIVE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34314:SF7">
        <property type="entry name" value="DUF3782 DOMAIN-CONTAINING PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12644">
        <property type="entry name" value="DUF3782"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07788">
        <property type="entry name" value="PDDEXK_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="Restriction endonuclease-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="39"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="323" mass="37175" checksum="7E917B91A4C87B97" modified="2008-05-20" version="1">MVEEVRRVLLEHPEIIAEAIEARPEVLYRALARLTPWQNLATKEDVRSLREEMQKIEEKMATKDDLKHLATKDDVSRLEDRLEETRREMATKEEVKTLEAKMATKDDIKAFATKEDLKTLEARVATKEDLKALATREELRALEAKMATKDDIKDLEARMATREDVRRLEEQVGEVRRVMVTKDEHVAFEKRIMAYVNALGARWGVVSEDVYREGVRELLRDAGYTVERWVYYDGEGYVYGYPAEVELDVVAKDGKTIAVELTAALKRGDLQYIKKKAELYQRTAGRPLDRVIVVTPFIHDRNPDLVRAKAKEYGIDIVAPGDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="84" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE10</accession>
    <name>B1YE10_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1092</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350442.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE10"/>
    <dbReference type="STRING" id="444157.Tneu_1092"/>
    <dbReference type="GeneID" id="6165486"/>
    <dbReference type="KEGG" id="tne:Tneu_1092"/>
    <dbReference type="eggNOG" id="arCOG01007">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013016_0_3_2"/>
    <dbReference type="OrthoDB" id="57034at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="entry name" value="ABC transporter involved in vitamin B12 uptake, BtuC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472:SF25">
        <property type="entry name" value="ABC TRANSPORTER PERMEASE PROTEIN MJ0876-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="ABC transporter involved in vitamin B12 uptake, BtuC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="37"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="66"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="91"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="120"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="163"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="213"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="285"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="307" mass="31237" checksum="66D57F0F98C4BCEC" modified="2008-05-20" version="1">MRRLLLLAAPLLFSAELLIGPAGLDWGIVDAVRLPRALGAAVSGALLGMSGLLLQTSLRNPLADPYLLGVSGSAMLTALGSYLLWRLWGLPYLGYFLGAVAGAALAVAGLTALARRASLYVVLMAGVLAAFLTGAALQLALLLLPPEELGYIYLGLQGSYGAYPPGALGWAVAGAAALLLAAVYLNSRHISALVHGEEAAAGLGVDVRRASALAVAAASAGAGLAVASVGPVGFVGLLAPHMARWAAGSHRVDRVLFDAAAMGAVLSLGADLAMRLLLPRDVPANVVLSIVGAPAAALLMWRYVRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="44" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE25</accession>
    <name>B1YE25_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1107</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350457.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE25"/>
    <dbReference type="STRING" id="444157.Tneu_1107"/>
    <dbReference type="GeneID" id="6165588"/>
    <dbReference type="KEGG" id="tne:Tneu_1107"/>
    <dbReference type="eggNOG" id="arCOG09818">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1987711_0_0_2"/>
    <dbReference type="OrthoDB" id="384828at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="125" mass="14215" checksum="8AED69234D28A009" modified="2008-05-20" version="1">MILAKVAEKKGCNAEGPTLLVIDYELGDARVYIEENFDIVETNAQWSTHLARFRRCQNVAAVIFDPAIDHEKGPICRADPNLCQGDNRRRIKSKDACRQLGEVLNNHLQPLVAWIAQNIPKLYTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="59" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8N5</accession>
    <name>B1Y8N5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">30S ribosomal protein S30e</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1185</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350533.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8N5"/>
    <dbReference type="STRING" id="444157.Tneu_1185"/>
    <dbReference type="GeneID" id="6165324"/>
    <dbReference type="KEGG" id="tne:Tneu_1185"/>
    <dbReference type="eggNOG" id="arCOG04293">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_209471_0_0_2"/>
    <dbReference type="OrthoDB" id="28200at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006846">
        <property type="entry name" value="Ribosomal_eS30"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF006817">
        <property type="entry name" value="PRK09336.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04758">
        <property type="entry name" value="Ribosomal_S30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 4" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="22"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="45"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB40114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="55" mass="6228" checksum="F04EE1184C528B80" modified="2008-05-20" version="1">MPSHGSLTKAGKVRNQTPKIPAKPRKNLTPRRRNIRNYRRRVLYASSQSTPAAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8U4</accession>
    <name>B1Y8U4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Transcription regulator TrmB N-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1246</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350592.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8U4"/>
    <dbReference type="STRING" id="444157.Tneu_1246"/>
    <dbReference type="GeneID" id="6165887"/>
    <dbReference type="KEGG" id="tne:Tneu_1246"/>
    <dbReference type="eggNOG" id="arCOG05687">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2115568_0_0_2"/>
    <dbReference type="OrthoDB" id="28675at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="112" mass="12727" checksum="E2CE247815134B8C" modified="2008-05-20" version="1">MDLRTLVASILASVTSADASTVYALAVIARDELREKMEITQLTVEEVLRQLADEGYVAEYEELSLDFRKRIKKYVATDKIKSLAQPLPPKAQQVAKLRYVTPAFYHLLNQQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8X0</accession>
    <name>B1Y8X0_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MIP18 family-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1272</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350618.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8X0"/>
    <dbReference type="STRING" id="444157.Tneu_1272"/>
    <dbReference type="GeneID" id="6166230"/>
    <dbReference type="KEGG" id="tne:Tneu_1272"/>
    <dbReference type="eggNOG" id="arCOG01845">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091588_2_2_2"/>
    <dbReference type="OrthoDB" id="371709at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.130">
        <property type="entry name" value="Fe-S cluster assembly (FSCA)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052339">
        <property type="entry name" value="Fe-S_Maturation_MIP18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034904">
        <property type="entry name" value="FSCA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002744">
        <property type="entry name" value="MIP18-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42831">
        <property type="entry name" value="FE-S PROTEIN MATURATION AUXILIARY FACTOR YITW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42831:SF1">
        <property type="entry name" value="FE-S PROTEIN MATURATION AUXILIARY FACTOR YITW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01883">
        <property type="entry name" value="FeS_assembly_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117916">
        <property type="entry name" value="Fe-S cluster assembly (FSCA) domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MIP18 family-like" evidence="1">
        <location>
            <begin position="18"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="132" mass="14823" checksum="992CD36D66F5FF35" modified="2008-05-20" version="1">MEEKPIFETNLPPDKAKKVVEVLREVYDPEIPINVYDLGLIRKVTLEDGVLKVVMTLTAVGCPVAGNVAQEVGYAIQAAVPEAKDVEVELDFEKPWDPTQMTPQGRELFKAIYGYDIVEQYMAQQQAAQLER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8X9</accession>
    <name>B1Y8X9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">D-lactate dehydrogenase (cytochrome)</fullName>
            <ecNumber evidence="7">1.1.2.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1281</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FAD-binding oxidoreductase/transferase type 4 family.</text>
    </comment>
    <dbReference type="EC" id="1.1.2.4" evidence="7"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350627.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8X9"/>
    <dbReference type="STRING" id="444157.Tneu_1281"/>
    <dbReference type="GeneID" id="6165817"/>
    <dbReference type="KEGG" id="tne:Tneu_1281"/>
    <dbReference type="eggNOG" id="arCOG00337">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017779_9_2_2"/>
    <dbReference type="OrthoDB" id="26910at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004458">
        <property type="term" value="F:D-lactate dehydrogenase (cytochrome) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008720">
        <property type="term" value="F:D-lactate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903457">
        <property type="term" value="P:lactate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.45.10:FF:000001">
        <property type="entry name" value="D-lactate dehydrogenase mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="3.30.70.2740:FF:000001">
        <property type="entry name" value="D-lactate dehydrogenase mitochondrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2740">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="entry name" value="Vanillyl-alcohol Oxidase, Chain A, domain 4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-bd_oxidored_4_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11748">
        <property type="entry name" value="D-LACTATE DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11748:SF111">
        <property type="entry name" value="D-LACTATE DEHYDROGENASE, MITOCHONDRIAL-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="FAD-binding/transporter-associated domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="FAD-linked oxidases, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0809">Transit peptide</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="8">
        <location>
            <begin position="33"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00038897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="444" mass="47705" checksum="6108470A49F06CD6" modified="2008-05-20" version="1">MDLGWLRRRFGDRFVEDGAVAALYVRDASFMEFSRSAIGVVFPEEEEEVVELVRWAVENRTPLFPQGCATSLSGNAAATAPGLVVSFERMAKVEVDPVDGVAVVGPGVKLEELNLALARYGLFFPVDPGSVKSATVGGAIANGAGGMRGAKYGTMKDWVLGLRVVTGRGDVLRLGCRTYKCRNGYDLVRLFVGSEGTLGLITEATLKLAPVPESAAAVLAYYRDVETLVEDVVRVRASRVWPLFAEFLDAPTSALVGLEEKNALFIGVDVNAGAEEKVINKLRGLLRGEVALEAAGWEASMRLLEPRRRLFYGQIKAAGGGVLVIEDVAVPISKLPDAVRGLKAAAARHGVPLLLGGHVGDGNIHPATWYRREEGPARVENFIRDMAELVAKLGGTISAEHGIGVLKRELAKAELGEAALSYMRELKRLFDPYNVLNPGKVLPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y8Y3</accession>
    <name>B1Y8Y3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 8">Riboflavin synthase</fullName>
            <ecNumber evidence="4 8">2.5.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Tneu_1285</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="9" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">V24Sta</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2 6,7-dimethyl-8-(1-D-ribityl)lumazine + H(+) = 5-amino-6-(D-ribitylamino)uracil + riboflavin</text>
            <dbReference type="Rhea" id="RHEA:20772"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
            <dbReference type="ChEBI" id="CHEBI:57986"/>
            <dbReference type="ChEBI" id="CHEBI:58201"/>
            <dbReference type="EC" id="2.5.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; riboflavin biosynthesis; riboflavin from 2-hydroxy-3-oxobutyl phosphate and 5-amino-6-(D-ribitylamino)uracil: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the DMRL synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.9" evidence="4 8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350631.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y8Y3"/>
    <dbReference type="STRING" id="444157.Tneu_1285"/>
    <dbReference type="GeneID" id="6165888"/>
    <dbReference type="KEGG" id="tne:Tneu_1285"/>
    <dbReference type="eggNOG" id="arCOG01322">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1682776_0_0_2"/>
    <dbReference type="OrthoDB" id="23911at2157"/>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00405"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009349">
        <property type="term" value="C:riboflavin synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004746">
        <property type="term" value="F:riboflavin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd09210">
        <property type="entry name" value="Riboflavin_synthase_archaeal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.960">
        <property type="entry name" value="Lumazine/riboflavin synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002180">
        <property type="entry name" value="LS/RS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036467">
        <property type="entry name" value="LS/RS_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006399">
        <property type="entry name" value="Ribfl_synth_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01506">
        <property type="entry name" value="ribC_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00885">
        <property type="entry name" value="DMRL_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52121">
        <property type="entry name" value="Lumazine synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0686">Riboflavin biosynthesis</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007424"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="NCBIfam" id="TIGR01506"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ACB40212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="152" mass="16666" checksum="F1B61145BC874B14" modified="2008-05-20" version="1">MVCIGVVDTTFARVDMGAAAVDELRSLMPHALVKRLTVPGIKNTVWGALRLIREGCDAVMVLGWVGPTQVDKYSYLATSIGLMQLQISTGVLVIDVTVHEEEGGGDERRLKEIALDRTRKHAWNLVQLLTEGLERYAGKGLRQGYPHAGEIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y929</accession>
    <name>B1Y929_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Like-Sm ribonucleoprotein core</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1332</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350677.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y929"/>
    <dbReference type="STRING" id="444157.Tneu_1332"/>
    <dbReference type="GeneID" id="6165208"/>
    <dbReference type="KEGG" id="tne:Tneu_1332"/>
    <dbReference type="eggNOG" id="arCOG00999">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_145829_0_0_2"/>
    <dbReference type="OrthoDB" id="24895at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11679">
        <property type="entry name" value="archaeal_Sm_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.310.60">
        <property type="entry name" value="Like-Sm ribonucleoprotein, C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028277">
        <property type="entry name" value="Lsm_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037156">
        <property type="entry name" value="Lsm_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR047575">
        <property type="entry name" value="Sm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025852">
        <property type="entry name" value="SM_dom_ATX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001163">
        <property type="entry name" value="Sm_dom_euk/arc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14894">
        <property type="entry name" value="Lsm_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14438">
        <property type="entry name" value="SM-ATX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00651">
        <property type="entry name" value="Sm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="Sm-like ribonucleoproteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS52002">
        <property type="entry name" value="SM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <feature type="domain" description="Sm" evidence="1">
        <location>
            <begin position="11"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS52002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="143" mass="16022" checksum="AACEA4E9B6375209" modified="2008-05-20" version="1">MSTTLAEASKRFVAELNNLIGREVQVVLSNGEVYRGVLHAVDNQLNIVLANAASKAGEKFVRVFIMYRYIVHIDSVEKRIDLREFAKHAEKVFPGMVKYVEETNTVLIGDKVRVSEVGVEGVGPVAERAKRLFEEFLKSKGIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="65" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y954</accession>
    <name>B1Y954_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DUF35 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1357</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350702.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y954"/>
    <dbReference type="STRING" id="444157.Tneu_1357"/>
    <dbReference type="GeneID" id="6164683"/>
    <dbReference type="KEGG" id="tne:Tneu_1357"/>
    <dbReference type="eggNOG" id="arCOG01285">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119412_2_2_2"/>
    <dbReference type="OrthoDB" id="9573at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.30.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002878">
        <property type="entry name" value="ChsH2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022002">
        <property type="entry name" value="ChsH2_Znr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052513">
        <property type="entry name" value="Thioester_dehydratase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34075">
        <property type="entry name" value="BLR3430 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34075:SF5">
        <property type="entry name" value="BLR3430 PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01796">
        <property type="entry name" value="OB_ChsH2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12172">
        <property type="entry name" value="zf-ChsH2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ChsH2 rubredoxin-like zinc ribbon" evidence="2">
        <location>
            <begin position="17"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="domain" description="ChsH2 C-terminal OB-fold" evidence="1">
        <location>
            <begin position="48"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="132" mass="15097" checksum="54A234DBE46A5809" modified="2008-05-20" version="1">MKHESVPIYWRNIPQYYRLVAKRCKKCGATYFPPVVRCRCGSLELENVELPREGKLVEFTVLYQVGTDFLKQKPLIIGIVELANGVRVTGQIIDAQPNKLTPGTKVETVFRRVVVDGKHGLVMYGYKFRPVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="48" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y970</accession>
    <name>B1Y970_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1373</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350718.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y970"/>
    <dbReference type="STRING" id="444157.Tneu_1373"/>
    <dbReference type="GeneID" id="6164401"/>
    <dbReference type="KEGG" id="tne:Tneu_1373"/>
    <dbReference type="eggNOG" id="arCOG05567">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1493028_0_0_2"/>
    <dbReference type="OrthoDB" id="24321at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="180" mass="20536" checksum="226C901DF8020D56" modified="2008-05-20" version="1">MECDVVLSYLKERGVAGSRRRLDFVAAVAGSLQIGFWCPREDFPNFDDIEDARKTLDLDHTDVLVVVAYRPYVIVDYLNSLMERASRWYGVQLHTKLLGVSSVELETGLEEALGRAFVEKPNKLGTAIKTEYVCPHCGRDALGLYRQERYFSRKYRGRVIEGIYACASCGFKIRRVELLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="78" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y999</accession>
    <name>B1Y999_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase associated with various cellular activities AAA_5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1403</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350747.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y999"/>
    <dbReference type="STRING" id="444157.Tneu_1403"/>
    <dbReference type="GeneID" id="6166329"/>
    <dbReference type="KEGG" id="tne:Tneu_1403"/>
    <dbReference type="eggNOG" id="arCOG00441">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_914050_0_0_2"/>
    <dbReference type="OrthoDB" id="9837at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050764">
        <property type="entry name" value="CbbQ/NirQ/NorQ/GpvN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42759:SF1">
        <property type="entry name" value="MAGNESIUM-CHELATASE SUBUNIT CHLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42759">
        <property type="entry name" value="MOXR FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="1">
        <location>
            <begin position="57"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="306" mass="33430" checksum="A8D3E85CAD6AA7A7" modified="2008-05-20" version="1">MRLSELLQRRAVDIPKLVRDRVRQLGVEEIRSRVSRVLRGLDDVVLDVLSGLMIGRPVVLVGTVGLGKTTLAETIAEILALGEPPYVTVACHSHMTAVDLTGDIDIAVVLQAGFDHPLSYIPGPLVLAHGTVLIMDELNRLNPYAQAALLQAIQEHYIYVRGYRIRADFALIGTANPSEYEGVYDLSEALADRLKFVEVKTPDVDLLKSILLWKAKEAVGDLGAEIPPKLAEILAKFAQAAEKAGYPQSVRSLSYALADATAQAWAQRRDPTLRDLKRALLANTPYGPEDKKAVVELFDRAIHGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9D9</accession>
    <name>B1Y9D9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1443</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350787.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9D9"/>
    <dbReference type="STRING" id="444157.Tneu_1443"/>
    <dbReference type="GeneID" id="58787343"/>
    <dbReference type="KEGG" id="tne:Tneu_1443"/>
    <dbReference type="eggNOG" id="arCOG07432">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3003292_0_0_2"/>
    <dbReference type="OrthoDB" id="26813at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="56" mass="6259" checksum="0F67342515A35F05" modified="2008-05-20" version="1">MDILLEEIRRTFGATDEGKLAEALVVAYRQGGAKAAKAVLHEYLRRLGVDVEDRED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9F7</accession>
    <name>B1Y9F7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAD dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1461</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350805.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9F7"/>
    <dbReference type="STRING" id="444157.Tneu_1461"/>
    <dbReference type="GeneID" id="6165541"/>
    <dbReference type="KEGG" id="tne:Tneu_1461"/>
    <dbReference type="eggNOG" id="arCOG00755">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007884_4_1_2"/>
    <dbReference type="OrthoDB" id="168391at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.9.10">
        <property type="entry name" value="D-Amino Acid Oxidase, subunit A, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13847:SF287">
        <property type="entry name" value="FAD-DEPENDENT OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13847">
        <property type="entry name" value="SARCOSINE DEHYDROGENASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="FAD/NAD(P)-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD dependent oxidoreductase" evidence="2">
        <location>
            <begin position="3"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="416" mass="45994" checksum="E8889DBAB6B419EF" modified="2008-05-20" version="1">MYDYLVVGAGAVGMATAYHIKRLSPSSRVLVVDQHPGVGMGDTAKSAAAFRTIFTSWINRTLAKTSVGFYREVQNSGYDLGMRHVGYLFLVPRENEATMRAVAHELIKAGTPVELYDKMDIPIRTRVSEDEEAREMGLPDVSVALLVKEAGIIDPERLVRYYYEKYVEAGGEVMFGVKVESVKFSPKRPIGIPGEPFPWQDARVAGVETSAGPLEAKNVIFATGAWTEMLMDAAGFGLPIKPRKRQVFVVKASGELGDLLRAGLADREYAPMIILPRGIYVRPEPVEESFWIGVSDRRRYGFEENPEPEEELWRFGIYPVLTKYVPLFEGKTPHNAWAGHYDENVVDYQPIVDRLAEGLYVAAGTSGSGIMKADAVGRIAASLALGLEKAELHGGMVVDSAVLKKTRCFEEERLVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9F8</accession>
    <name>B1Y9F8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF5678 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1462</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350806.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9F8"/>
    <dbReference type="STRING" id="444157.Tneu_1462"/>
    <dbReference type="GeneID" id="58787344"/>
    <dbReference type="KEGG" id="tne:Tneu_1462"/>
    <dbReference type="eggNOG" id="arCOG05587">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_211865_0_0_2"/>
    <dbReference type="OrthoDB" id="27292at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="56" mass="6458" checksum="29AF906BAD49BA7A" modified="2008-05-20" version="1">MIEEELERWAEVARRSGRRGWVLVKEGKVVGVYPSRKDAILSAREPGIYLLLVIDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9H5</accession>
    <name>B1Y9H5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1479</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350823.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9H5"/>
    <dbReference type="STRING" id="444157.Tneu_1479"/>
    <dbReference type="GeneID" id="6166006"/>
    <dbReference type="KEGG" id="tne:Tneu_1479"/>
    <dbReference type="eggNOG" id="arCOG05590">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2191128_0_0_2"/>
    <dbReference type="OrthoDB" id="27986at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="108" mass="11767" checksum="3EB0C5BBBD9C49B2" modified="2008-05-20" version="1">MSRVATISVFILDVTATLAALFGLLTAVSGLCLTKPEVVAEATMGVFSSYAICSKLHLGWVSITAIVLSVIHGTAGFYIWLLRTGRDWPWIWALGLVLSIWFIYVYAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9J2</accession>
    <name>B1Y9J2_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1497</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350840.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9J2"/>
    <dbReference type="STRING" id="444157.Tneu_1497"/>
    <dbReference type="GeneID" id="6165479"/>
    <dbReference type="KEGG" id="tne:Tneu_1497"/>
    <dbReference type="eggNOG" id="arCOG05595">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2629867_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="74" mass="7958" checksum="544513EE9C823030" modified="2008-05-20" version="1">MIDYQLLWGILKGVFNLVAHLLAASGLGEWGGRVMAALLFASFFFMAGVFKRTRKAVGVALAVTIVAVVLLAYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="82" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9M3</accession>
    <name>B1Y9M3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1528</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350871.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9M3"/>
    <dbReference type="STRING" id="444157.Tneu_1528"/>
    <dbReference type="GeneID" id="6166143"/>
    <dbReference type="KEGG" id="tne:Tneu_1528"/>
    <dbReference type="eggNOG" id="arCOG01605">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139698_1_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016625">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011898">
        <property type="entry name" value="PorD_KorD"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR02179">
        <property type="entry name" value="PorD_KorD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43724">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43724:SF1">
        <property type="entry name" value="PYRUVATE SYNTHASE SUBUNIT PORD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14697">
        <property type="entry name" value="Fer4_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="9">
        <location>
            <begin position="28"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="9">
        <location>
            <begin position="58"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="89" mass="9703" checksum="1DE36BC3A19CD152" modified="2008-05-20" version="1">MRNQDLSVLPISKPAPASAGATGTWRTYKPVVDLAKCVDCGICWLYCPESVIEWEKGRKIAIDYMYCKGCGICADVCPVKAISMEPEGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="76" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9S3</accession>
    <name>B1Y9S3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Large ribosomal subunit protein uL24</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpl24</name>
        <name evidence="6" type="ordered locus">Tneu_1549</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Located at the polypeptide exit tunnel on the outside of the subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="4">One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the universal ribosomal protein uL24 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350892.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9S3"/>
    <dbReference type="STRING" id="444157.Tneu_1549"/>
    <dbReference type="GeneID" id="6165237"/>
    <dbReference type="KEGG" id="tne:Tneu_1549"/>
    <dbReference type="eggNOG" id="arCOG04094">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093240_2_1_2"/>
    <dbReference type="OrthoDB" id="10899at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06089">
        <property type="entry name" value="KOW_RPL26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="2.30.30.30:FF:000009">
        <property type="entry name" value="60S ribosomal protein L26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01326_A">
        <property type="entry name" value="Ribosomal_uL24_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005824">
        <property type="entry name" value="KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_uL2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005825">
        <property type="entry name" value="Ribosomal_uL24_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005756">
        <property type="entry name" value="Ribosomal_uL24_euk/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041988">
        <property type="entry name" value="Ribosomal_uL24_KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01080">
        <property type="entry name" value="rplX_A_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11143">
        <property type="entry name" value="60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00467">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16906">
        <property type="entry name" value="Ribosomal_L26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00739">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="Translation proteins SH3-like domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01108">
        <property type="entry name" value="RIBOSOMAL_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="KOW" evidence="5">
        <location>
            <begin position="46"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB40473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="122" mass="14029" checksum="371DF8DCB5FB7F73" modified="2008-05-20" version="1">MPFTTSAQPRKQRLSLYKAPLHLRHKLLNAKLSPELSKKLGVKRLPVRRGDTVLILRGDFKGVTGKVVRVDLKRVRIYVEGATRTNSKGQTVYYPIHPSKVMIVEADTSDKVRQKLLERRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="87" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9V9</accession>
    <name>B1Y9V9_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_1586</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350928.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9V9"/>
    <dbReference type="STRING" id="444157.Tneu_1586"/>
    <dbReference type="GeneID" id="6165900"/>
    <dbReference type="KEGG" id="tne:Tneu_1586"/>
    <dbReference type="eggNOG" id="arCOG00924">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_2"/>
    <dbReference type="OrthoDB" id="24644at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015807">
        <property type="term" value="P:L-amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd03224">
        <property type="entry name" value="ABC_TM1139_LivF_branched"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR052156">
        <property type="entry name" value="BCAA_Transport_ATP-bd_LivF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43820:SF7">
        <property type="entry name" value="BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43820">
        <property type="entry name" value="HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="6">
        <location>
            <begin position="5"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB40509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="242" mass="26259" checksum="C25AE9425DCD8FCC" modified="2008-05-20" version="1">MSEVLRVEGLEAGYGKFRVLFGVDLVVNSGEIVVLLGPNGAGKSTLLNSVVGMADVYSGRITLMGTNVVGKPPHEIMKMGVAYVMQSPNNFGTPNIFGELTVYENLVAASTGVPKAEVFKRMEDVYAVFPKLRELRDRKAKFLSGGERQMLAIGMGLMKSPRLLMLDEPTAGLAPKLVSDFFHTIRDIRDKFGISILLVEQNAKKALEIGDRAYVLVTGRIKYSGSAKSLDEEKLAALFLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="83" xmlns="https://uniprot.org/uniprot">
    <accession>B1Y9Y8</accession>
    <name>B1Y9Y8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_1615</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350957.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1Y9Y8"/>
    <dbReference type="GeneID" id="6165810"/>
    <dbReference type="KEGG" id="tne:Tneu_1615"/>
    <dbReference type="eggNOG" id="arCOG05671">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1782596_0_0_2"/>
    <dbReference type="OrthoDB" id="28799at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="C-terminal effector domain of the bipartite response regulators"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="2"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="113"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="113"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB40538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="152" mass="16958" checksum="55358777B2F55FFF" modified="2008-05-20" version="1">MTVRLTETERKVADLYSKGLRPREIAERLGISINTVYKALSKARRALELAEEPVDGQRYYAFSASVYMYNVFSQAQPISVSSSRAVLIHEVQDAVLKKLDEILAILKSSRPEPRAAKAPPAREADLGNDGNGHLPEPLRKNIWISLLRSKAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="100" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA17</accession>
    <name>B1YA17_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">GTPase HflX</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">GTP-binding protein HflX</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hflX</name>
        <name evidence="10" type="ordered locus">Tneu_0033</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer. Associates with the 50S ribosomal subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="5">May associate with membranes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB38991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349413.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA17"/>
    <dbReference type="STRING" id="444157.Tneu_0033"/>
    <dbReference type="GeneID" id="6164872"/>
    <dbReference type="KEGG" id="tne:Tneu_0033"/>
    <dbReference type="eggNOG" id="arCOG00353">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019597_2_0_2"/>
    <dbReference type="OrthoDB" id="10150at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd01878">
        <property type="entry name" value="HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.250.2860">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11060">
        <property type="entry name" value="GTPase HflX, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00900">
        <property type="entry name" value="GTPase_HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030394">
        <property type="entry name" value="G_HFLX_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032305">
        <property type="entry name" value="GTP-bd_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016496">
        <property type="entry name" value="GTPase_HflX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025121">
        <property type="entry name" value="GTPase_HflX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042108">
        <property type="entry name" value="GTPase_HflX_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03156">
        <property type="entry name" value="GTP_HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10229">
        <property type="entry name" value="GTP-BINDING PROTEIN HFLX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10229:SF8">
        <property type="entry name" value="GTPASE HFLX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16360">
        <property type="entry name" value="GTP-bdg_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13167">
        <property type="entry name" value="GTP-bdg_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006809">
        <property type="entry name" value="GTP-binding_hflX_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51705">
        <property type="entry name" value="G_HFLX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hflx-type G" evidence="9">
        <location>
            <begin position="186"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="382"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Low complexity" evidence="8">
        <location>
            <begin position="386"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="192"/>
            <end position="199"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="238"/>
            <end position="241"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="306"/>
            <end position="309"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="334"/>
            <end position="336"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR006809-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR006809-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB38991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="403" mass="44917" checksum="CC6F6F983C925AE5" modified="2008-05-20" version="1">MRNRALLSYVGPKTPNLAYKLEEFVSLAEVAGFEVVDLITQFGRADTRFYLGPGKAEAVAAKDFDVFIAYHSLTPLQVFNLERLFKRRALDRVLVILMIFEKRAGSIESKLQIELARLRYELPKVKEYLRRAKMGEQLGFMGAGEYIVDAYYRHMVKRISTIRRKLEEVRRSRVMHIAKRKEAGVPEVVITGYTSAGKTTLFNRLVGEDKLVDGKPFATLETYSRSLDLWGKRVVVTDTIGFIDDLPPLLVESFHSTLQEIIDADVILLVVDGSEPREEISRKIETSVATLGEVGISRDRVIPVVNKVDKIGVAEVKNLRGIVGRYFSWFIPVSALTGFGIEALKAVLFFKTPGYQISRTASAEGARGLRVGDVTFVATRPAPLCGSRSPRGSSGPARGDDAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="99" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA37</accession>
    <name>B1YA37_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Enolase</fullName>
            <ecNumber evidence="6">4.2.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">2-phospho-D-glycerate hydro-lyase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">2-phosphoglycerate dehydratase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">eno</name>
        <name evidence="12" type="ordered locus">Tneu_0053</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible conversion of 2-phosphoglycerate (2-PG) into phosphoenolpyruvate (PEP). It is essential for the degradation of carbohydrates via glycolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(2R)-2-phosphoglycerate = phosphoenolpyruvate + H2O</text>
            <dbReference type="Rhea" id="RHEA:10164"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="EC" id="4.2.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds a second Mg(2+) ion via substrate during catalysis.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="9">Mg(2+) is required for catalysis and for stabilizing the dimer.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 6">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 4/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Secreted</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell surface</location>
        </subcellularLocation>
        <text evidence="6">Fractions of enolase are present in both the cytoplasm and on the cell surface.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the enolase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.11" evidence="6"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349432.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA37"/>
    <dbReference type="STRING" id="444157.Tneu_0053"/>
    <dbReference type="GeneID" id="6164889"/>
    <dbReference type="KEGG" id="tne:Tneu_0053"/>
    <dbReference type="eggNOG" id="arCOG01169">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031223_0_1_2"/>
    <dbReference type="OrthoDB" id="8680at2157"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00187"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009986">
        <property type="term" value="C:cell surface"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000015">
        <property type="term" value="C:phosphopyruvate hydratase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004634">
        <property type="term" value="F:phosphopyruvate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="entry name" value="Enolase-like C-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.10">
        <property type="entry name" value="Enolase-like, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00318">
        <property type="entry name" value="Enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000941">
        <property type="entry name" value="Enolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029017">
        <property type="entry name" value="Enolase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020810">
        <property type="entry name" value="Enolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020811">
        <property type="entry name" value="Enolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11902">
        <property type="entry name" value="ENOLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11902:SF1">
        <property type="entry name" value="ENOLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00113">
        <property type="entry name" value="Enolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03952">
        <property type="entry name" value="Enolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001400">
        <property type="entry name" value="Enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00148">
        <property type="entry name" value="ENOLASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00002">
        <property type="entry name" value="enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG00178">
        <property type="entry name" value="enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00001">
        <property type="entry name" value="Enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01192">
        <property type="entry name" value="Enolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01193">
        <property type="entry name" value="Enolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="Enolase C-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54826">
        <property type="entry name" value="Enolase N-terminal domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5 6 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="3 6 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Enolase N-terminal" evidence="11">
        <location>
            <begin position="3"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="Enolase C-terminal TIM barrel" evidence="10">
        <location>
            <begin position="135"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6 7">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6 7">
        <location>
            <position position="334"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>(2R)-2-phosphoglycerate</name>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 9">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 9">
        <location>
            <position position="283"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="283"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 9">
        <location>
            <position position="309"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="309"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="334"/>
        </location>
        <ligand>
            <name>(2R)-2-phosphoglycerate</name>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="361"/>
            <end position="364"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="363"/>
        </location>
        <ligand>
            <name>(2R)-2-phosphoglycerate</name>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="364"/>
        </location>
        <ligand>
            <name>(2R)-2-phosphoglycerate</name>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="385"/>
        </location>
        <ligand>
            <name>(2R)-2-phosphoglycerate</name>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="385"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001400-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001400-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001400-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM01192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB39011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="417" mass="44932" checksum="D805FCF9846EA480" modified="2008-05-20" version="1">MQIEDVWIRKVFTGRGDITVEVELTAEDPAAGGYVVTRAAAPAGASRGAHEVLYFPEGGVDAALAAFEKLVAPEVVGLDVTETYAVDGKLEEVDGTPRFERIGGAVAIATSFAAAEAGAASLGVPLFTFLGGAYARRLPLPLGNVIGGGKHSRGLGPDIQEFLVIPLNPPDAFTAVYVNAEVHKRALKYILKVDSSFTGGKNDEGAWTPRISSITALKILKEAAAEVEKELGVEVGLGVDVAASSLWNGGRYVYKNEGVERGPREQMEFISKLVEEFDLIYVEDPFHEEDFQSFAELTDKFRDRLIVGDDLFVTNPDRIKRGGEMKAATGVIIKPDQIGTLMRAHQAVETAKRFGMRAVVSHRSGDTEYRTLAHIAVGFGADVIKTGIMGGERTAKLNELIRIGDYLGKWAAIARIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA79</accession>
    <name>B1YA79_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">AAA ATPase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0095</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349474.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA79"/>
    <dbReference type="STRING" id="444157.Tneu_0095"/>
    <dbReference type="GeneID" id="6165024"/>
    <dbReference type="KEGG" id="tne:Tneu_0095"/>
    <dbReference type="eggNOG" id="arCOG03738">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1100998_0_0_2"/>
    <dbReference type="OrthoDB" id="26002at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="258" mass="28996" checksum="95BBB7D0D74A4DF4" modified="2008-05-20" version="1">MGCDIPRWPVAGESFQLGGRTWIRAAETLVKLTSAFPMAVLLGRAGMGKSQVAYEVCRMTNCIYIDLTEVGERNMANIAAIVAWRILAKYGGRDPRNRVAEAYRKFGYEGLLSLARGDPAWTLRTALELAGPRVVVVLDELLPSAEDPKFFDVAYILHRVRNMHLPNASFLVTMLPEVYEKIVERIPPLGNFFLHITVQLPDVIPEDEVEEIVSVYCPEKAELARKILAERPDATVRELLLALNNMPSRRYIELTPTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YA94</accession>
    <name>B1YA94_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Class III signal peptide-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349489.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YA94"/>
    <dbReference type="STRING" id="444157.Tneu_0110"/>
    <dbReference type="GeneID" id="6166122"/>
    <dbReference type="KEGG" id="tne:Tneu_0110"/>
    <dbReference type="eggNOG" id="arCOG03739">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139556_0_0_2"/>
    <dbReference type="OrthoDB" id="28981at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="143" mass="14763" checksum="F033C24C2A48FFCA" modified="2008-05-20" version="1">MPTKLRGMTSLEIAIIVAIVLIIAVAVGWYLYTTFVASTTGQPRLNVVSAEIYASKGTLNLTLVNPGPIDVQISAVEVGGTTGSSPQCTGTTPDSSGNIVIKVGQQVKCGFKITITATPGTMLPGRVILSGGQSFPFNAIVKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="56" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAA7</accession>
    <name>B1YAA7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposase IS605 OrfB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0124</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349502.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAA7"/>
    <dbReference type="GeneID" id="6166109"/>
    <dbReference type="KEGG" id="tne:Tneu_0124"/>
    <dbReference type="eggNOG" id="arCOG00687">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053996_0_0_2"/>
    <dbReference type="OrthoDB" id="28072at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010095">
        <property type="entry name" value="Cas12f1-like_TNB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07282">
        <property type="entry name" value="Cas12f1-like_TNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51998">
        <property type="entry name" value="PFL-like glycyl radical enzymes"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cas12f1-like TNB" evidence="2">
        <location>
            <begin position="331"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="417" mass="48552" checksum="366818A9975AE89C" modified="2008-05-20" version="1">MYAYRTLRVEIPWRLVEKRPDVLDLVTRMYLAVEEYARRLLKEIAGQEEPKLTAEELDRLLTPERRELARRIIEEVFPKYGLKKYFVKQAKMFWRDAAFWRTVPLDAQLRVENEKDVSRSVFVDLKSGVLKVRKLGIPPFAVKLKKSNVAWIRRRLEEGARLKLAFLGVEKRGGEKEPTYGRLYVALVFAREAAPVEPRAIVVVDVNRLDHGVVVGLVVDGKVVKRKRLPDEGAVRGLRKLHEEISRLDERAAREADPVRRRRLEDRARHLASKRYRKIRGVVKDVVSEIIKLAREHQAAVVVDTIEDESYRELKEGNGSGEKKHLLDGLGQLRRRLQALTEWYGLPYLEERLYSTVCPRCGAKMEERKRVMRCPSCGFSDHRDNVPLLWAKRRYWEILQKQPVFSSTLATITLLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="92" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAD9</accession>
    <name>B1YAD9_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Tryptophan--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Tryptophanyl-tRNA synthetase</fullName>
            <shortName evidence="9">TrpRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">trpS</name>
        <name evidence="11" type="ordered locus">Tneu_1666</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="11" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the attachment of tryptophan to tRNA(Trp).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 9">
            <text>tRNA(Trp) + L-tryptophan + ATP = L-tryptophyl-tRNA(Trp) + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:24080"/>
            <dbReference type="Rhea" id="RHEA-COMP:9671"/>
            <dbReference type="Rhea" id="RHEA-COMP:9705"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78535"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.2"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9 10">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.2" evidence="9"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351007.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAD9"/>
    <dbReference type="STRING" id="444157.Tneu_1666"/>
    <dbReference type="GeneID" id="6165436"/>
    <dbReference type="KEGG" id="tne:Tneu_1666"/>
    <dbReference type="eggNOG" id="arCOG01887">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032621_0_1_2"/>
    <dbReference type="OrthoDB" id="371821at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004830">
        <property type="term" value="F:tryptophan-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006436">
        <property type="term" value="P:tryptophanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00806">
        <property type="entry name" value="TrpRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="FunFam" id="1.10.240.10:FF:000007">
        <property type="entry name" value="Tryptophan--tRNA ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="entry name" value="HUPs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.240.10">
        <property type="entry name" value="Tyrosyl-Transfer RNA Synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00140_A">
        <property type="entry name" value="Trp_tRNA_synth_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002305">
        <property type="entry name" value="aa-tRNA-synth_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002306">
        <property type="entry name" value="Trp-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020653">
        <property type="entry name" value="Tryptophan-tRNA-ligase_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF008927">
        <property type="entry name" value="PRK12285.1-4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR00233">
        <property type="entry name" value="trpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10055:SF1">
        <property type="entry name" value="TRYPTOPHAN--TRNA LIGASE, CYTOPLASMIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10055">
        <property type="entry name" value="TRYPTOPHANYL-TRNA SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00579">
        <property type="entry name" value="tRNA-synt_1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01039">
        <property type="entry name" value="TRNASYNTHTRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52374">
        <property type="entry name" value="Nucleotidylyl transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="84"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="9">
        <location>
            <begin position="261"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00049929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ACB40588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="377" mass="43201" checksum="D365B725DA33C336" modified="2008-05-20" version="1">MDVKGEDFVVTPWEVRGRVDYDKLLQHFGARRLTQAEVSILERYAGEVHPLIRRGFFYAHRDFDAILKWHGEGKPWALYTGRGPSGPVHIGHMVPWILLKWFSDKFGLEVYFQMTDDEKFYDDPDMKLDEATGWAYENALDIIALGFTPDKLHLIVDTKDIKPLYPIAVRVAKKLTWNTVKATFGFTDSTNIGLIFYPSLQIAVAFLPTELRGQPTPVLIPCAIDQDPYFRLARDIADGLGYPKPATLYSKFIMALTGESKMSASNPDSAIYTIDDEKTVKRKIMNAFTGGRPTAEEQRKYGGDPDICPVFHYHMLFDPDDASVEKIRQDCKSGAMLCGECKLRLYEKITRFLKDHRERREKARGRVDEYRISVKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="95" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAF4</accession>
    <name>B1YAF4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Transcription termination factor Tfs</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Tneu_1681</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="10" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="5 8">Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351022.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAF4"/>
    <dbReference type="STRING" id="444157.Tneu_1681"/>
    <dbReference type="GeneID" id="6165222"/>
    <dbReference type="KEGG" id="tne:Tneu_1681"/>
    <dbReference type="eggNOG" id="arCOG00579">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093932_3_2_2"/>
    <dbReference type="OrthoDB" id="72957at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of DNA-templated transcription"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10511">
        <property type="entry name" value="Zn-ribbon_TFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.25.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012164">
        <property type="entry name" value="Rpa12/Rpb9/Rpc10/TFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006288">
        <property type="entry name" value="TFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001529">
        <property type="entry name" value="Zn_ribbon_RPB9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001222">
        <property type="entry name" value="Znf_TFIIS"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01384">
        <property type="entry name" value="TFS_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11239">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11239:SF12">
        <property type="entry name" value="DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01096">
        <property type="entry name" value="Zn_ribbon_TFIIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005586">
        <property type="entry name" value="RNApol_RpoM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00661">
        <property type="entry name" value="RPOL9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00440">
        <property type="entry name" value="ZnF_C2C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57783">
        <property type="entry name" value="Zinc beta-ribbon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00466">
        <property type="entry name" value="ZF_TFIIS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51133">
        <property type="entry name" value="ZF_TFIIS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3 6" id="KW-0862">Zinc</keyword>
    <keyword evidence="2 7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="TFIIS-type" evidence="9">
        <location>
            <begin position="67"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="4"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="24"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR005586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR005586-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ACB40603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="110" mass="12546" checksum="A640F1E7566E10D6" modified="2008-05-20" version="1">MRFCPNDRSLLVPVKRGDKTVLRCPKCGYEEEASGDVKSRYQSKAAVENKNPVIVVADNPVNLPKAKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRCTKCGHTWREYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAG5</accession>
    <name>B1YAG5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator, fis family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1692</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351033.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAG5"/>
    <dbReference type="STRING" id="444157.Tneu_1692"/>
    <dbReference type="GeneID" id="6165360"/>
    <dbReference type="KEGG" id="tne:Tneu_1692"/>
    <dbReference type="eggNOG" id="arCOG00431">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_846278_0_0_2"/>
    <dbReference type="OrthoDB" id="31134at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.310.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038763">
        <property type="entry name" value="DHH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051319">
        <property type="entry name" value="Oligoribo/pAp-PDE_c-di-AMP_PDE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47618">
        <property type="entry name" value="BIFUNCTIONAL OLIGORIBONUCLEASE AND PAP PHOSPHATASE NRNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47618:SF1">
        <property type="entry name" value="BIFUNCTIONAL OLIGORIBONUCLEASE AND PAP PHOSPHATASE NRNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64182">
        <property type="entry name" value="DHH phosphoesterases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="316" mass="34584" checksum="1721008A48635C3D" modified="2008-05-20" version="1">MLLTALKAKLARRPLALCDAGDVDGVASAALFKRAYPRGAVVLAGPTDVRRWWVKALRWDFVADLPCPGKARVRADHHKTNKPCAEVEFYDPDAPAAAVLAAKALGLENDEVARQLVDAAVQTDTADVRDPKVKLLDLAIRYADMREKLAAVEKLAQRGLAALEEEPLKSAAQRGLERDRLVQQIAAAIPPEEVLVIYSPTRLGISYRALAIELEKRGSSFVNILVKRGWRTYRLYCGAHRDSPYDCTQVAGRLGGGGHKYAAGALVKAPIYRRAKPLEDLLEMVKPRAVYVLGPCNGLKIPCRSVEVMRRGSSEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="54" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAI6</accession>
    <name>B1YAI6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1715</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351054.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAI6"/>
    <dbReference type="STRING" id="444157.Tneu_1715"/>
    <dbReference type="GeneID" id="6165626"/>
    <dbReference type="KEGG" id="tne:Tneu_1715"/>
    <dbReference type="eggNOG" id="arCOG05653">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2243959_0_0_2"/>
    <dbReference type="OrthoDB" id="23552at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="104" mass="11339" checksum="76BE28BE7DB16172" modified="2008-05-20" version="1">MKTNRVPTTFIIGGGREAMHCAKKIGAVHIDQYAEVNPEEVDGGIQAHVEDPNLAILLLDAAEKIYLYPEFAQLLPSLPRDRVVVAAPEGHPLCAEYRCGKPCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAT3</accession>
    <name>B1YAT3_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Coenzyme Q-binding protein COQ10 START domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0207</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349583.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAT3"/>
    <dbReference type="GeneID" id="6164857"/>
    <dbReference type="KEGG" id="tne:Tneu_0207"/>
    <dbReference type="eggNOG" id="arCOG05400">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_131895_0_0_2"/>
    <dbReference type="OrthoDB" id="7914at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd07812">
        <property type="entry name" value="SRPBCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005031">
        <property type="entry name" value="COQ10_START"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03364">
        <property type="entry name" value="Polyketide_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55961">
        <property type="entry name" value="Bet v1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Coenzyme Q-binding protein COQ10 START" evidence="1">
        <location>
            <begin position="13"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="134" mass="15537" checksum="3A31E60D57C714E4" modified="2008-05-20" version="1">MAVRFKVERKTESPDSAWAKMSDVENMPRYWGGHREVKILERRGSLLLAQVRFAFPGPLNKAMAEVYIDGGRREVVMRYLKGPFTGTVVNYVRNNVVGSIWDVRLHPLFRIAKPWIENHFRKGVEHAVEQLTQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAT8</accession>
    <name>B1YAT8_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0212</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349588.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAT8"/>
    <dbReference type="STRING" id="444157.Tneu_0212"/>
    <dbReference type="GeneID" id="6165731"/>
    <dbReference type="KEGG" id="tne:Tneu_0212"/>
    <dbReference type="eggNOG" id="arCOG00845">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1154409_0_0_2"/>
    <dbReference type="OrthoDB" id="43754at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04301">
        <property type="entry name" value="NAT_SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43072:SF60">
        <property type="entry name" value="L-2,4-DIAMINOBUTYRIC ACID ACETYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43072">
        <property type="entry name" value="N-ACETYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="Acyl-CoA N-acyltransferases (Nat)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="228" mass="25199" checksum="BCE95A51EBAA6F89" modified="2008-05-20" version="1">MLTFRPASEEDIPEIVSFTMDTWDWGDYIPQVIGRWVREGRAYVALWSGRVAAVAALLTVGKSAYLHGLRVRPELRGRGIGEAITRFLLDEARRRGAAVATALVAEWNAPSHRLVRKIGFRERFYIYGGRPAGGNGRCLSGVEAYEAVSEALGRSRGYACLPDDPWVCTALTPWDLLSRGRPCLGEALYIGRFSFGKAQGDPSADATSLSPEGYRERYAAHLLYSIDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YAV8</accession>
    <name>B1YAV8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PaREP1 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0234</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349608.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YAV8"/>
    <dbReference type="GeneID" id="6165948"/>
    <dbReference type="KEGG" id="tne:Tneu_0234"/>
    <dbReference type="eggNOG" id="arCOG05491">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2581548_0_0_2"/>
    <dbReference type="OrthoDB" id="26482at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="80" mass="9314" checksum="18C17DC5B6704F4F" modified="2008-05-20" version="1">MEPDVTTAMAKRVEELQRLADSIAEHHPYWPALHFTLQLLGRLVEKWHEDFTGEEKEELLWLAEKIRESIEKIQTESAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="49" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB39</accession>
    <name>B1YB39_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NurA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1822</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351158.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB39"/>
    <dbReference type="STRING" id="444157.Tneu_1822"/>
    <dbReference type="GeneID" id="6164370"/>
    <dbReference type="KEGG" id="tne:Tneu_1822"/>
    <dbReference type="eggNOG" id="arCOG00367">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_638761_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018977">
        <property type="entry name" value="NurA_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09376">
        <property type="entry name" value="NurA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00933">
        <property type="entry name" value="NurA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NurA" evidence="1">
        <location>
            <begin position="49"/>
            <end position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="429" mass="48333" checksum="867A4C2DC3D0665C" modified="2008-05-20" version="1">MDHFFDMFMASAGRKLREYLGSRSLQDYPLEELSSYILKRPVPQEEAALRAAGVDGGIGVVKLANGHQVVLARAAAVGPDFLEREFIADVAAVDSASLPWAYLVIAESLVGIRAVEKHGVDLLLMDGSLYAKALRLVHNLILTREFQNLYYVPELATALYTLSRLIKTAEERGTRLVFVSKDHSFKILKEHVVFEKLGERYRDYLFQRGLQWYSILWIRRFRRELLDLYKAARGHDYAGARLLALLVAQSVTDGELLSSLLPPGHYTVPMLVGSCDAYINYKGLATVDKLVKAAEDRLEDSMILRLKEGFNSDIPGLIRESLEALPKIYLFYLRLRSDDTPLLVELPAEGTKMFDGSPVKAFYPAAKVEDVASTLAAQYRDPAHYNTWLWYAHTVASFKSSQLSEYAVYLKKMAEEVGVARRVKLAWGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="100" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB46</accession>
    <name>B1YB46_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Molybdate/tungstate import ATP-binding protein WtpC</fullName>
            <ecNumber evidence="8">7.3.2.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Tneu_1829</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="13" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Part of the ABC transporter complex WtpABC involved in molybdate/tungstate import. Responsible for energy coupling to the transport system.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>tungstate(in) + ATP + H2O = tungstate(out) + ADP + phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:35027"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46502"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.3.2.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">The complex is composed of two ATP-binding proteins (WtpC), two transmembrane proteins (WtpB) and a solute-binding protein (WtpA).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.</text>
    </comment>
    <dbReference type="EC" id="7.3.2.6" evidence="8"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351165.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB46"/>
    <dbReference type="STRING" id="444157.Tneu_1829"/>
    <dbReference type="GeneID" id="6164729"/>
    <dbReference type="KEGG" id="tne:Tneu_1829"/>
    <dbReference type="eggNOG" id="arCOG00175">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_1_2"/>
    <dbReference type="OrthoDB" id="18368at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901238">
        <property type="term" value="F:ABC-type tungstate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="FunFam" id="3.40.50.300:FF:000425">
        <property type="entry name" value="Probable ABC transporter, ATP-binding subunit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="entry name" value="Nucleic acid-binding proteins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050093">
        <property type="entry name" value="ABC_SmlMolc_Importer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42781">
        <property type="entry name" value="SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42781:SF4">
        <property type="entry name" value="SPERMIDINE_PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="MOP-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="12">
        <location>
            <begin position="5"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00038307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00038781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00039025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00041133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00047936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00057369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ACB40746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="328" mass="36683" checksum="CE1753A69B4248D8" modified="2008-05-20" version="1">MGLAVELQDVSVRYGDFLALKNVNLNVEAGEGMVLLGPSGSGKSTILRTIAGFVKPSAGRVYIGGKDVTDLPPERRGVSMLFQDLALFPHLDVFENVAFGLRVRRVPEEEVRKRVRWALELVRLDPSQHGRRRIHQLSGGQQQRVALARALVVEPEVLLLDEPFSHIDVDIKSRLLEELKVLHNKLGFTLIYVTHDRHEAVEVGDRIALVRDGVVVQVGKPIELYRRPRNRFVAEFFGEANILPAAALGISSGGYAVVRPEDVVLGGNTTYRFRGRVVDVTFMWHYLKVEIQSDGHVIKAYVDLDTPVALNDEVEFGFDARDVYVVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB69</accession>
    <name>B1YB69_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, PadR-like family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0247</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349621.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB69"/>
    <dbReference type="STRING" id="444157.Tneu_0247"/>
    <dbReference type="GeneID" id="6166125"/>
    <dbReference type="KEGG" id="tne:Tneu_0247"/>
    <dbReference type="eggNOG" id="arCOG00002">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063440_1_3_2"/>
    <dbReference type="OrthoDB" id="56053at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005149">
        <property type="entry name" value="Tscrpt_reg_PadR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43252">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR YQJI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43252:SF5">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR, PADR-LIKE FAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03551">
        <property type="entry name" value="PadR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transcription regulator PadR N-terminal" evidence="1">
        <location>
            <begin position="13"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="157" mass="18018" checksum="738008E268C36266" modified="2008-05-20" version="1">MYKRRRGVFKGVVLYILRSRALSGYEILKELGRLTAGRFVPSPGTLYPLLSYLEAEGLIESRESYVGRRRKKIYQLTDRGRELLEQLLEDEEFKALVQQIEGGASPDLLTAIRDELVYIDEVFDEVEGGDTAVLEEILAILKRLEDKTQARLARARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YB91</accession>
    <name>B1YB91_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">4Fe-4S ferredoxin iron-sulfur binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0269</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349643.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YB91"/>
    <dbReference type="STRING" id="444157.Tneu_0269"/>
    <dbReference type="GeneID" id="6165605"/>
    <dbReference type="KEGG" id="tne:Tneu_0269"/>
    <dbReference type="eggNOG" id="arCOG00291">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_153636_0_0_2"/>
    <dbReference type="OrthoDB" id="23833at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-ARBA"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050572">
        <property type="entry name" value="Fe-S_Ferredoxin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43687">
        <property type="entry name" value="ADENYLYLSULFATE REDUCTASE, BETA SUBUNIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43687:SF1">
        <property type="entry name" value="FERREDOXIN III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14697">
        <property type="entry name" value="Fer4_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54862">
        <property type="entry name" value="4Fe-4S ferredoxins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="11"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="110" mass="12425" checksum="FBE95302E2115E30" modified="2008-05-20" version="1">MSVVEELAKYQRVVIDQDTCISCGACVAACPYQALELDDNGKSRLIWEKCRDDYSCVAVCPVKCIYKASEAPAEYKSKKGWYRLGKTLTPEEKTAFDQWRAKYNITAEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBH1</accession>
    <name>B1YBH1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1858</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351192.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBH1"/>
    <dbReference type="STRING" id="444157.Tneu_1858"/>
    <dbReference type="GeneID" id="6164838"/>
    <dbReference type="KEGG" id="tne:Tneu_1858"/>
    <dbReference type="eggNOG" id="arCOG03761">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078142_0_0_2"/>
    <dbReference type="OrthoDB" id="4832at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02440">
        <property type="entry name" value="AdoMet_MTases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="entry name" value="Vaccinia Virus protein VP39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13489">
        <property type="entry name" value="Methyltransf_23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="S-adenosyl-L-methionine-dependent methyltransferases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="297" mass="33999" checksum="8933C9E595F75834" modified="2008-05-20" version="1">MYVDFSSVWRHFKEYIHASGGIFELKKALDWSVWYAAKWWREVKEGADLKKPFAKALYISLLRRGIIDERGEFRKEVGEPEMPRGLYAREWVEMHMRFDELGAARVARDEVDRNALELLYSDIQVQGWHRIMVKAFLKAVGVTDGQAVLEPYSREGHLAAFYHEDYRPASYLGYDPSAALLEMAKAVAPSAAFAAASSACELSGRYNAVLLIEKLQWMPDPLRELDCISRLLEPGGRLYVAQPVAESMPGYLAILTAVGAHHVFTWRETEAMLASRFKLERRLIRAMPFYGAVFQKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="70" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBN1</accession>
    <name>B1YBN1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="12">IMP biosynthesis enzyme PurP domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Tneu_1918</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="12" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">V24Sta</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351252.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBN1"/>
    <dbReference type="STRING" id="444157.Tneu_1918"/>
    <dbReference type="GeneID" id="6164997"/>
    <dbReference type="KEGG" id="tne:Tneu_1918"/>
    <dbReference type="eggNOG" id="arCOG04346">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065084_0_0_2"/>
    <dbReference type="OrthoDB" id="84677at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016879">
        <property type="term" value="F:ligase activity, forming carbon-nitrogen bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006188">
        <property type="term" value="P:IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="entry name" value="ATP-grasp fold, A domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.20">
        <property type="entry name" value="ATP-grasp fold, B domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023656">
        <property type="entry name" value="IMP_biosynth_PurP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009720">
        <property type="entry name" value="IMP_biosynth_PurP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010672">
        <property type="entry name" value="IMP_biosynth_PurP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38147:SF1">
        <property type="entry name" value="5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-MONOPHOSPHATE SYNTHETASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38147">
        <property type="entry name" value="5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE-1-(BETA)-D-RIBOFURANOSYL 5'-MONOPHOSPHATE SYNTHETASE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06849">
        <property type="entry name" value="DUF1246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06973">
        <property type="entry name" value="DUF1297"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004602">
        <property type="entry name" value="ATPgrasp_PurP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56059">
        <property type="entry name" value="Glutathione synthetase ATP-binding domain-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="PreATP-grasp domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0464">Manganese</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="11">
        <location>
            <begin position="96"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ACB40833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="346" mass="39590" checksum="3799D643AECB6A2E" modified="2008-05-20" version="1">MVSVAVLASHSALDVLDGAKDEGLRTVAVAKRGRERAYREFPVVDKLIVLEDYRDVLKAVDVLKAEEAVFVPNRSFAVYVGYDAIEREFPVPIFGNRFLLRWEERTGPQNYYRLLDEAGVRRPRTFRPDEVDRPVIVKMPEAERRVERGFFVARDRDDLYRKARRLADAGVIKLEDLERSSIEELVLGAHFNANYFYSVMRRRLELHSFDRRIQSNLDGVFRLPARDQLEVDPEVRYIEVGHEPATIRESLLEKVFDVGYRFVEAARRLVPPGVIGPFTLQFIVTPQLDLVVYDVAPRIGGGTNVYIGVGGQYSKLYFGKPISIGRRIAMEIREAAEQGRLSEVTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBR4</accession>
    <name>B1YBR4_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Sulfate exporter family transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Tneu_0348</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="7" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349718.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBR4"/>
    <dbReference type="STRING" id="444157.Tneu_0348"/>
    <dbReference type="GeneID" id="6165426"/>
    <dbReference type="KEGG" id="tne:Tneu_0348"/>
    <dbReference type="eggNOG" id="arCOG03874">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033541_6_0_2"/>
    <dbReference type="OrthoDB" id="26684at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018383">
        <property type="entry name" value="UPF0324_pro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30106">
        <property type="entry name" value="INNER MEMBRANE PROTEIN YEIH-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30106:SF1">
        <property type="entry name" value="UPF0324 MEMBRANE PROTEIN FN0533"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03601">
        <property type="entry name" value="Cons_hypoth698"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="65"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="99"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="130"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="185"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="216"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="248"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="318"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="358"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="415"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="439"/>
            <end position="461"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ACB39298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="9">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="467" mass="50925" checksum="98CCAB3CDD677598" modified="2008-05-20" version="1">MSQPKKIDWSSLYKKEDWWALWLGLALFFYAFIGFYAYRDALGWVPMWKVWTDISSPVAVPNPKLVFGSPWVNLIVAWIVMMLLLMGPAKLIGIKPLDWVKGFTVIYWLWWICAIITGYKPIASVVTTEFAFTLALFIGILIGNLPKLPQWLLGSARGEWFIKTAIVLLGAKILFTDWIRYGGSVLTMVLMGFPVFMLLAFPIFRLFTKNTDLSVVSAVGVGVCGVSAAIAAAGAIGAPAIYPTMVSAAILIYAAVELIILPMVAISLVKSGVISEAAAGAWMGLSVKTDGAAAASAEIVARGIGSDTPLKIGVMSKVLIDIWIGTIAFVLALIWVFLVEPRRAAVATQRKPSPLELWFRFPKFVLGYFFTSLVVSALILSLAGSVYAKAANPVDEATKAVVPIVVGRGTDPFRVLLFGLTFVAIGINTRFSLMKQYKVWNLFIAYGIALLVIIGVAYLLATSFFPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="50" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBR7</accession>
    <name>B1YBR7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0351</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349721.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBR7"/>
    <dbReference type="STRING" id="444157.Tneu_0351"/>
    <dbReference type="GeneID" id="6166290"/>
    <dbReference type="KEGG" id="tne:Tneu_0351"/>
    <dbReference type="eggNOG" id="arCOG03766">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1381467_0_0_2"/>
    <dbReference type="OrthoDB" id="23799at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="188" mass="21098" checksum="F46EF2189D75A0EF" modified="2008-05-20" version="1">MSRSTVPVEGDVAREVASLAKSHGFSVVRLATDSLKLAMELMKRGLTPVNALEMYKLLEKIIAFDVVPVSLSFLELLAKKWDICNDPEIEHYLKETGEKFGKTLLSEFKNFNEFIRVASLLFAQFPTARFTINKTGNVWRIYFAPAGPLSARCLARFAEEVIKQFGCVTKTQYNPVIAVEVECQGKTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="67" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBS4</accession>
    <name>B1YBS4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0358</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349728.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBS4"/>
    <dbReference type="STRING" id="444157.Tneu_0358"/>
    <dbReference type="GeneID" id="6165225"/>
    <dbReference type="KEGG" id="tne:Tneu_0358"/>
    <dbReference type="eggNOG" id="arCOG01619">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023205_0_1_2"/>
    <dbReference type="OrthoDB" id="275427at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="entry name" value="NADP-dependent oxidoreductase domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NAD(P)_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43638:SF3">
        <property type="entry name" value="ALDEHYDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43638">
        <property type="entry name" value="OXIDOREDUCTASE, ALDO/KETO REDUCTASE FAMILY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="NAD(P)-linked oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADP-dependent oxidoreductase" evidence="1">
        <location>
            <begin position="12"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="274" mass="29826" checksum="2150F5BA560C8350" modified="2008-05-20" version="1">MRCSKAGMCVTPLGLGTFGVGGDFWTEDRGRDYEAVTALRRGLELGVGLVDTSELYGRGHAEELVGVAAGGLAGVVIITKLQPTSVTLDEVVKRAEASARRLGRRPTAVAIHWVPPNVSVCDVVKVLEAAVEKGAADYYGLTNVTAGMLKTALVCAKKTQPAFVQNRYSLLHRRDEIDVIPLAKREGLIYMAYSPLERGALALDSYLAQVGQRYGKTAAQVALNWYIKAGIVPIVKAANVEHVEENAGALGWALSDRDWEEINKFYIQYRYVNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBV1</accession>
    <name>B1YBV1_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Heavy-metal chelation domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0387</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349755.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBV1"/>
    <dbReference type="STRING" id="444157.Tneu_0387"/>
    <dbReference type="GeneID" id="6165102"/>
    <dbReference type="KEGG" id="tne:Tneu_0387"/>
    <dbReference type="eggNOG" id="arCOG03216">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094096_0_0_2"/>
    <dbReference type="OrthoDB" id="40399at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11590">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007161">
        <property type="entry name" value="DUF364"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025251">
        <property type="entry name" value="DUF4213"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04016">
        <property type="entry name" value="DUF364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13938">
        <property type="entry name" value="DUF4213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159713">
        <property type="entry name" value="Dhaf3308-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4213" evidence="2">
        <location>
            <begin position="10"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="Putative heavy-metal chelation" evidence="1">
        <location>
            <begin position="99"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="5">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="241" mass="26478" checksum="FFEE9A6443E7A86D" modified="2008-05-20" version="1">MLVRRVAEYVSQMAEGLKVLDYCVCLSGVYVVVEGPRGRALGFAHVPREDLHELGEVRPPALEEMAEFVVDLHPINRALGVAMVNAVSQYHLGPVEPGDLMKYYAGDPVCLVGNMGPLAESLRRRGHQVYVFEKSPHLRFGAYSEVEERILLPRCRTVIITGMTLLNFTIDDVLAASRGVNILTGPTAGVHPDALRGTGVHVVASMKFNIEPTIRHLKLGRYISLALHRDLGTPYALSVNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="52" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBV7</accession>
    <name>B1YBV7_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cobalt transport protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0393</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349761.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBV7"/>
    <dbReference type="STRING" id="444157.Tneu_0393"/>
    <dbReference type="GeneID" id="6164903"/>
    <dbReference type="KEGG" id="tne:Tneu_0393"/>
    <dbReference type="eggNOG" id="arCOG02250">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1399790_0_0_2"/>
    <dbReference type="OrthoDB" id="28960at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="194" mass="20624" checksum="60C28733A6A6D807" modified="2008-05-20" version="1">MLRKLVEDITEAVAAFERTPRVENTPFSILLLVSTAAASFSPSVHTAAAFFALGLLFAAAAREVKPWALAAFFSLFFSGLVSLPAALGLLPSRTDPLLFVTRTVSAASAATGGLLLTGWWGFVRSLRLRGDLRRMFELMPLSVIAIGRAAVVIAAAKEARGEDKRAVAAAVGDVLLYGIQRGVSLRMAYEARSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YBW2</accession>
    <name>B1YBW2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Hydrogenase assembly chaperone hypC/hupF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0398</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HupF/HypC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349766.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YBW2"/>
    <dbReference type="STRING" id="444157.Tneu_0398"/>
    <dbReference type="GeneID" id="6165073"/>
    <dbReference type="KEGG" id="tne:Tneu_0398"/>
    <dbReference type="eggNOG" id="arCOG04427">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2191173_0_0_2"/>
    <dbReference type="OrthoDB" id="43695at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001109">
        <property type="entry name" value="Hydrogenase_HupF/HypC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01455">
        <property type="entry name" value="HupF_HypC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159127">
        <property type="entry name" value="HupF/HypC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="4">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="115" mass="12504" checksum="AF7A4846FE0CA65A" modified="2008-05-20" version="1">MCWAVPSVVKRIEGGIAFVDPGDGVERPAVVGIEEGQLQVGDLVMVHAGVIIAKVDMESLKESMEMWKQMARELAASTGEDPDAAAKVIEEEMWRVLKIAEEVRQGVSRGLKELA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YC43</accession>
    <name>EF1B_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Elongation factor 1-beta</fullName>
            <shortName evidence="1">EF-1-beta</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">aEF-1beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ef1b</name>
        <name type="ordered locus">Tneu_1982</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the EF-1-beta/EF-1-delta family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012351316.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YC43"/>
    <dbReference type="SMR" id="B1YC43"/>
    <dbReference type="STRING" id="444157.Tneu_1982"/>
    <dbReference type="GeneID" id="6165557"/>
    <dbReference type="KEGG" id="tne:Tneu_1982"/>
    <dbReference type="eggNOG" id="arCOG01988">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_165896_1_0_2"/>
    <dbReference type="OrthoDB" id="84643at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00292">
        <property type="entry name" value="EF1B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00043">
        <property type="entry name" value="EF1_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036219">
        <property type="entry name" value="eEF-1beta-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014038">
        <property type="entry name" value="EF1B_bsu/dsu_GNE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014717">
        <property type="entry name" value="Transl_elong_EF1B/ribsomal_bS6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004542">
        <property type="entry name" value="Transl_elong_EF1B_B_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF001670">
        <property type="entry name" value="PRK00435.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39647">
        <property type="entry name" value="ELONGATION FACTOR 1-BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39647:SF1">
        <property type="entry name" value="ELONGATION FACTOR 1-BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00736">
        <property type="entry name" value="EF1_GNE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006521">
        <property type="entry name" value="Transl_elong_EF1B_B_arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00888">
        <property type="entry name" value="EF1_GNE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54984">
        <property type="entry name" value="eEF-1beta-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0251">Elongation factor</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000366442" description="Elongation factor 1-beta">
        <location>
            <begin position="1"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00043"/>
        </source>
    </evidence>
    <sequence length="92" mass="10585" checksum="D9B017F93DF43246" modified="2008-05-20" version="1">MSAEVALVYRVLPESVEVDIEKLKTSVINKLSPKYKVDRVEVEEIGFGIKALRFFIRMPESDEYSSDEVEELLRSVEGVGGYELEYFSRLSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="62" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCA1</accession>
    <name>B1YCA1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">5-oxoprolinase (ATP-hydrolyzing)</fullName>
            <ecNumber evidence="2">3.5.2.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0467</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.5.2.9" evidence="2"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349834.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCA1"/>
    <dbReference type="STRING" id="444157.Tneu_0467"/>
    <dbReference type="GeneID" id="6166096"/>
    <dbReference type="KEGG" id="tne:Tneu_0467"/>
    <dbReference type="eggNOG" id="arCOG01512">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020413_0_0_2"/>
    <dbReference type="OrthoDB" id="8261at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017168">
        <property type="term" value="F:5-oxoprolinase (ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003692">
        <property type="entry name" value="Hydantoinase_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045079">
        <property type="entry name" value="Oxoprolinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365">
        <property type="entry name" value="5-OXOPROLINASE RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365:SF23">
        <property type="entry name" value="HYPOTHETICAL 5-OXOPROLINASE (EUROFUNG)-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02538">
        <property type="entry name" value="Hydantoinase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydantoinase B/oxoprolinase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="509"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="514" mass="55383" checksum="922295710C1894DF" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCA4</accession>
    <name>B1YCA4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0470</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCA4"/>
    <dbReference type="STRING" id="444157.Tneu_0470"/>
    <dbReference type="KEGG" id="tne:Tneu_0470"/>
    <dbReference type="eggNOG" id="arCOG09842">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1582955_0_0_2"/>
    <dbReference type="OrthoDB" id="373951at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="168" mass="18824" checksum="448F2B9CAEE0062D" modified="2008-05-20" version="1">MPGLRPDCLQTPNVGRRCCICGENDCSVALSDRGVTILFADGEEAVAEGPHCDCVVVLRRDNYVEIYSVELKRIAVDKNKADDALNPDTLRQKCESCLRWAEEVVNRFNSPSRRGVGVVKNCVVVIPMEVFQRVATLVRRERSRYKPSGTQLRILYCNDSITGYAEVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="55" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCF2</accession>
    <name>B1YCF2_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Transcription factor zinc-finger domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0522</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349885.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCF2"/>
    <dbReference type="GeneID" id="6165872"/>
    <dbReference type="KEGG" id="tne:Tneu_0522"/>
    <dbReference type="eggNOG" id="arCOG06997">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_147819_0_1_2"/>
    <dbReference type="OrthoDB" id="11143at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027392">
        <property type="entry name" value="TF_Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13453">
        <property type="entry name" value="Zn_ribbon_TFIIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transcription factor zinc-finger" evidence="1">
        <location>
            <begin position="4"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="75" mass="8726" checksum="53FB1D50EE784C24" modified="2008-05-20" version="1">MKFCPVCGVELKPRVVYGIEIDQCPKCGGVWLDGGELNKLIAAVKELGDYSEYEDVEVRREKKKRFFEFFDELFD</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2026-01-28" version="79" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCG8</accession>
    <name>IF2B_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Translation initiation factor 2 subunit beta</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">aIF2-beta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">eIF-2-beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">eif2b</name>
        <name type="ordered locus">Tneu_0538</name>
    </gene>
    <organism>
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterotrimer composed of an alpha, a beta and a gamma chain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the eIF-2-beta/eIF-5 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349901.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCG8"/>
    <dbReference type="SMR" id="B1YCG8"/>
    <dbReference type="STRING" id="444157.Tneu_0538"/>
    <dbReference type="GeneID" id="6165732"/>
    <dbReference type="KEGG" id="tne:Tneu_0538"/>
    <dbReference type="eggNOG" id="arCOG01640">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026663_3_1_2"/>
    <dbReference type="OrthoDB" id="38099at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.30.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00232">
        <property type="entry name" value="eIF_2_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045196">
        <property type="entry name" value="IF2/IF5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004458">
        <property type="entry name" value="TIF2_bsu_arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002735">
        <property type="entry name" value="Transl_init_fac_IF2/IF5_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016189">
        <property type="entry name" value="Transl_init_fac_IF2/IF5_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016190">
        <property type="entry name" value="Transl_init_fac_IF2/IF5_Zn-bd"/>
    </dbReference>
    <dbReference type="NCBIfam" id="NF003067">
        <property type="entry name" value="PRK03988.1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23001">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23001:SF3">
        <property type="entry name" value="EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01873">
        <property type="entry name" value="eIF-5_eIF-2B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00653">
        <property type="entry name" value="eIF2B_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100966">
        <property type="entry name" value="Translation initiation factor 2 beta, aIF2beta, N-terminal domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75689">
        <property type="entry name" value="Zinc-binding domain of translation initiation factor 2 beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0396">Initiation factor</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000100488" description="Translation initiation factor 2 subunit beta">
        <location>
            <begin position="1"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00232"/>
        </source>
    </evidence>
    <sequence length="134" mass="15456" checksum="9AC38CBD2C28E71E" modified="2008-05-20" version="1">MDEEYIALLDRAYKLVAPKAQRRAEIPKIEVQNMPRKTVIPNFGQIAKRLNRDIYFMAKFFQRELAVPGTVEGDVFTLHGEKSPKVVEAVYERFIRYYVVCPVCNSIDTELRREGRIYVMRCLACGASTPVKPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCN6</accession>
    <name>B1YCN6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">6-phospho 3-hexuloisomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0610</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIS family. PHI subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012349969.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCN6"/>
    <dbReference type="STRING" id="444157.Tneu_0610"/>
    <dbReference type="GeneID" id="6165493"/>
    <dbReference type="KEGG" id="tne:Tneu_0610"/>
    <dbReference type="eggNOG" id="arCOG00068">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094236_1_0_2"/>
    <dbReference type="OrthoDB" id="350569at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05005">
        <property type="entry name" value="SIS_PHI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10490">
        <property type="entry name" value="Glucose-6-phosphate isomerase like protein, domain 1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017552">
        <property type="entry name" value="PHI/rmpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR03127">
        <property type="entry name" value="RuMP_HxlB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43443">
        <property type="entry name" value="3-HEXULOSE-6-PHOSPHATE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43443:SF1">
        <property type="entry name" value="3-HEXULOSE-6-PHOSPHATE ISOMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SIS domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SIS" evidence="2">
        <location>
            <begin position="35"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="202" mass="22125" checksum="98331E7D26E981E7" modified="2008-05-20" version="1">MVTYFKQAYLEIANFIIHALDKLKIEEVEAFVKTIEDIYRQNKKILVVGVGRSGLVGRAFAMRLRHLGARSYVLGETITPSVEEGDLLVAISGSGTTQVVVAAAEAAKKMRAKVAAVTSYYDSPLAKTADLVLYVPGRTKLASMDDYFARQILGIHEPLSPLGTLFEDTSMVVLDAVIAELMKRLGKNESDLAKRHANIEVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="61" xmlns="https://uniprot.org/uniprot">
    <accession>B1YCZ7</accession>
    <name>B1YCZ7_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ribosomal protein L38</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Tneu_0721</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="5" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the eukaryotic ribosomal protein eL38 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350080.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YCZ7"/>
    <dbReference type="STRING" id="444157.Tneu_0721"/>
    <dbReference type="GeneID" id="6165688"/>
    <dbReference type="KEGG" id="tne:Tneu_0721"/>
    <dbReference type="eggNOG" id="arCOG04057">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2802419_0_0_2"/>
    <dbReference type="OrthoDB" id="24419at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990904">
        <property type="term" value="C:ribonucleoprotein complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.720.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002675">
        <property type="entry name" value="Ribosomal_eL38"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038464">
        <property type="entry name" value="Ribosomal_eL38_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01781">
        <property type="entry name" value="Ribosomal_L38e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ACB39660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="67" mass="7996" checksum="FE028E12C575DC64" modified="2008-05-20" version="1">MPKEVFLLELWRQYGEKAEEVRVKRYPEYVKLKARLSGYLYTIKLPPEKAEQVLSELKAKNVKIEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="47" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD27</accession>
    <name>B1YD27_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0751</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350110.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD27"/>
    <dbReference type="GeneID" id="6165131"/>
    <dbReference type="KEGG" id="tne:Tneu_0751"/>
    <dbReference type="eggNOG" id="arCOG05538">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1709200_0_0_2"/>
    <dbReference type="OrthoDB" id="28156at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="157" mass="18117" checksum="3C540CAC69E592F5" modified="2008-05-20" version="1">MHIEIRDPSLVERLRRLLPRPDAPFDDVIVKLLEQPCKLRLKEIVEEVMAAANWDARVARAVEEALGRVLGDVDRRIAHSVDRAVREALRHVQIGGAEVGGGWEAVVREALRRPDRCLTFAEIRKYYGKNLNSVMLRKRGFVQKERGVWCWPKETEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="58" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD28</accession>
    <name>B1YD28_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Conserved TM helix repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Tneu_0752</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="3" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350111.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD28"/>
    <dbReference type="STRING" id="444157.Tneu_0752"/>
    <dbReference type="GeneID" id="6164864"/>
    <dbReference type="KEGG" id="tne:Tneu_0752"/>
    <dbReference type="eggNOG" id="arCOG01572">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086558_0_0_2"/>
    <dbReference type="OrthoDB" id="27635at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008910">
        <property type="entry name" value="MSC_TM_helix"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05552">
        <property type="entry name" value="MS_channel_1st_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="115"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="158"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="223"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="250"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="domain" description="Major facilitator superfamily (MFS) profile" evidence="2">
        <location>
            <begin position="86"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ACB39691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="279" mass="29912" checksum="0831EC18D085A8AF" modified="2008-05-20" version="1">MYLVLNWDQLWQDFVTYGLQGVIAVLIVVVAWAVGSLVGSAVNRLIEKTGLERAFDRTDVGKAFRAAGIDLSNLIGMLITAFVVVIGVVIALGYLKIGGEAGALVAQVARYLPRLIGGIILLTAGLILVALLTDYIGRLLVSLFPKQFVEIGEMLRNLLLIGLIALVVSIALDLMLFTGPLVYPLILGTVIIGAGIFIGHTIVRNIVEDHPEFANAAPYAKFLLYLIFLMVGLGAIFANFPATAQVVQNVAWGVAIAVGILLAPVVYMLAKRMAKEVKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="72" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD37</accession>
    <name>B1YD37_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">FeS assembly protein SufB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0761</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the iron-sulfur cluster assembly SufBD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350120.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD37"/>
    <dbReference type="STRING" id="444157.Tneu_0761"/>
    <dbReference type="GeneID" id="6164555"/>
    <dbReference type="KEGG" id="tne:Tneu_0761"/>
    <dbReference type="eggNOG" id="arCOG01715">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026231_0_1_2"/>
    <dbReference type="OrthoDB" id="372168at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR055346">
        <property type="entry name" value="Fe-S_cluster_assembly_SufBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010231">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000825">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037284">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045595">
        <property type="entry name" value="SufBD_N"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01980">
        <property type="entry name" value="sufB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30508">
        <property type="entry name" value="FES CLUSTER ASSEMBLY PROTEIN SUF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30508:SF1">
        <property type="entry name" value="UPF0051 PROTEIN ABCI8, CHLOROPLASTIC-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01458">
        <property type="entry name" value="SUFBD_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19295">
        <property type="entry name" value="SufBD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101960">
        <property type="entry name" value="Stabilizer of iron transporter SufD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SUF system FeS cluster assembly SufBD N-terminal" evidence="3">
        <location>
            <begin position="140"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="SUF system FeS cluster assembly SufBD core" evidence="2">
        <location>
            <begin position="211"/>
            <end position="443"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00043967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="474" mass="53489" checksum="3C069DE43C67AA5C" modified="2008-05-20" version="1">MQELESLRSTISHVESVEELLGVERQFNYQVELKGRITRDMIEEISRLKGEPDWMRRLRLRMLELFEKLPTPRWVRAVEEIDLEALVHYAKPQTEAVSSWDQVPKEIREYYEKLGLPEIEAKALLGLGAQFDSEIIYFNLKKKLQELGVVMLPMEEAVKRYPELVQRYFMRVFPPEHKFAALHGALWSGGVFIYVPPGVRIEQPLETFFFIGQSMESQMEHSIVVADKGAYVHWIEGCSAPRLLKYSFHNGMVEGYAHEGATLKITTVQNWSRNVVNFNNKRAVAEAGAKVHWVEGSIGSKTTYTFPSTVLKGEGASTEIVGITAAKGPYWKENGAKVWHLAPRTSSRVVNKSISAEGGVAVYRGVVHVQRGAKYARSHVQCDSLVLDKKSATLTVPHDQVFEETAVVTHEATASTISEEKIMYLRARGFTEDDAKASIVLGFVGDILKDLPFEYAVVLSRVIELEFGRLSKVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="81" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD45</accession>
    <name>B1YD45_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Flavin-dependent thymidylate synthase</fullName>
            <shortName evidence="1">FDTS</shortName>
            <ecNumber evidence="1">2.1.1.148</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">FAD-dependent thymidylate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Thymidylate synthase ThyX</fullName>
            <shortName evidence="1">TS</shortName>
            <shortName evidence="1">TSase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">thyX</name>
        <name evidence="2" type="ordered locus">Tneu_0769</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the reductive methylation of 2'-deoxyuridine-5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>dUMP + (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + NADPH + H(+) = dTMP + (6S)-5,6,7,8-tetrahydrofolate + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:29043"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <dbReference type="EC" id="2.1.1.148"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="1">Binds 4 FAD per tetramer. Each FAD binding site is formed by three monomers.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; dTTP biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the thymidylate synthase ThyX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.148" evidence="1"/>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350128.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD45"/>
    <dbReference type="STRING" id="444157.Tneu_0769"/>
    <dbReference type="GeneID" id="6164328"/>
    <dbReference type="KEGG" id="tne:Tneu_0769"/>
    <dbReference type="eggNOG" id="arCOG01883">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1136110_0_0_2"/>
    <dbReference type="OrthoDB" id="18918at2157"/>
    <dbReference type="UniPathway" id="UPA00575"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070402">
        <property type="term" value="F:NADPH binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050797">
        <property type="term" value="F:thymidylate synthase (FAD) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004799">
        <property type="term" value="F:thymidylate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006231">
        <property type="term" value="P:dTMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006235">
        <property type="term" value="P:dTTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd20175">
        <property type="entry name" value="ThyX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01408">
        <property type="entry name" value="ThyX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003669">
        <property type="entry name" value="Thymidylate_synthase_ThyX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036098">
        <property type="entry name" value="Thymidylate_synthase_ThyX_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34934">
        <property type="entry name" value="FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34934:SF1">
        <property type="entry name" value="FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02511">
        <property type="entry name" value="Thy1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69796">
        <property type="entry name" value="Thymidylate synthase-complementing protein Thy1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51331">
        <property type="entry name" value="THYX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="1 2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="1" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Involved in ionization of N3 of dUMP, leading to its activation" evidence="1">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <note>ligand shared between neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="80"/>
            <end position="83"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="83"/>
            <end position="85"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <note>ligand shared between neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <begin position="93"/>
            <end position="95"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="153"/>
            <end position="155"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <note>ligand shared between neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <note>ligand shared between neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="244" mass="28303" checksum="840FA6CF23220DA3" modified="2008-05-20" version="1">MVLVSHTPRVALVGSWGSEELVSSFTDVLYRGVPLEEALKQGGDVVARRISAFYRQGHWSVFEFMGAQFLVECSRACHTQFIRHRLASYWSESQRYVDYARREIRFIVPRGFPADLLKRAYEDYVKLREGWRPEHARMVLPNATAVLFAVQMNARELLLNFVPLRCAYAAQAEIRHVCWQMYAHVWRLWPNLAKLVWDDLPSLHRDFCTKVPKGEDCRLYAVKDAEEKHGPLPEKPWLALAVNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="77" xmlns="https://uniprot.org/uniprot">
    <accession>B1YD72</accession>
    <name>B1YD72_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATPase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_0796</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YD72"/>
    <dbReference type="KEGG" id="tne:Tneu_0796"/>
    <dbReference type="eggNOG" id="arCOG03409">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070505_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00009">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011579">
        <property type="entry name" value="ATPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01637">
        <property type="entry name" value="ATPase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase" evidence="1">
        <location>
            <begin position="8"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="333" mass="37947" checksum="2118494A16707B8D" modified="2008-05-20" version="1">MHSHVDIFVGRVRELGWFREVMGVQHTYPFLLYGPLGCGKTTLAQKVAEKAEELFGDALVLYVNTRAERWDDALVTNAVDILGEVAKALAAQFAGRPAGEVAAKFTTTAILEILKRLSLRNVEKVLLVVDEFHHAYGDDPVGWVKYFMDRMEHPTLRVKELKNKIYNVVLITSEYAAVERILPRGYADPYMVWNLAREEFRELYDALNPPIDFETLWRTCGGNPRCAGDLKRVGWDVERYEEELIERENINKMVKEAAKLGVVELLKRAVEDPDVLDQPGAERLERLLYRYNKVLEIKRTIAGGKPPRDPALGVGERYAWHWPALKDAVAKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="89" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDC3</accession>
    <name>B1YDC3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Tneu_0849</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="6" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">V24Sta</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350206.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDC3"/>
    <dbReference type="STRING" id="444157.Tneu_0849"/>
    <dbReference type="GeneID" id="6164292"/>
    <dbReference type="KEGG" id="tne:Tneu_0849"/>
    <dbReference type="eggNOG" id="arCOG01580">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091233_5_4_2"/>
    <dbReference type="OrthoDB" id="6995at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043200">
        <property type="term" value="P:response to amino acid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="TreeGrafter"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="entry name" value="Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30154">
        <property type="entry name" value="LEUCINE-RESPONSIVE REGULATORY PROTEIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30154:SF34">
        <property type="entry name" value="TRANSCRIPTIONAL REGULATOR AZLB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13412">
        <property type="entry name" value="HTH_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="Dimeric alpha+beta barrel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="Winged helix' DNA-binding domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="5">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ACB39786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="167" mass="18897" checksum="0171CFB7272DCD57" modified="2008-05-20" version="1">MDETDRRLLVLLQEDAKKTLHELSEELGKPKTTIAARVKRLENDGVIIGYKAVVNPFAIGYKLLAFVLVSVRRGVAARESKPLQQEVAEKILAECTGERGMPFVEEAYIITGPYDLLFKVWARDIKQLSTFLVAYLASNPDIQRTETLIVLEIVDDWRKRVMPPSTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="73" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDF1</accession>
    <name>B1YDF1_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phosphoribosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_0877</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDF1"/>
    <dbReference type="STRING" id="444157.Tneu_0877"/>
    <dbReference type="KEGG" id="tne:Tneu_0877"/>
    <dbReference type="eggNOG" id="arCOG00040">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080904_0_1_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRTase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43363">
        <property type="entry name" value="HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43363:SF3">
        <property type="entry name" value="XANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="PRTase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phosphoribosyltransferase" evidence="3">
        <location>
            <begin position="49"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="208" mass="23554" checksum="7ABD2A3756AFF162" modified="2008-05-20" version="1">MWREPAQQWRALTSPPGVVFLYPSPPVAMLVEVGGVKVRFVSWAEGIALSEALAKKVEESGYKPEVIVAISRGGLVPARVISDVLGVDDIVTVGVKYWGLAQRRAERPLLYHGIEPGVVRGRRTLVVDEVADTGHTLAVVKSLLDLIGAAEVKTAVVHLKTTSRFVPDYYAERIEEWVWISYPWSRYEDLREFRKRGYDVWRYMERIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="64" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDF3</accession>
    <name>B1YDF3_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="8">NADH dehydrogenase subunit A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Tneu_0879</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="8" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">V24Sta</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the complex I subunit 3 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350236.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDF3"/>
    <dbReference type="STRING" id="444157.Tneu_0879"/>
    <dbReference type="GeneID" id="6164499"/>
    <dbReference type="KEGG" id="tne:Tneu_0879"/>
    <dbReference type="eggNOG" id="arCOG01557">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_147805_1_0_2"/>
    <dbReference type="OrthoDB" id="51573at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1610">
        <property type="entry name" value="NADH:ubiquinone/plastoquinone oxidoreductase, chain 3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000440">
        <property type="entry name" value="NADH_UbQ/plastoQ_OxRdtase_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038430">
        <property type="entry name" value="NDAH_ubi_oxred_su3_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00507">
        <property type="entry name" value="Oxidored_q4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="59"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="88"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ACB39816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="122" mass="13175" checksum="B9CAAD9B4479B632" modified="2008-05-20" version="1">MGDAEAVALAFLVLFALMVETIYIAKLIAPRRPTPMKLMRYEAGNPESGPAKAPLAMQYLGYVLMLVALEPVAAVPLALAVWGGADVYTVIYISLAGGLIAMAAAYYAYSYARRIELWRVSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDF8</accession>
    <name>B1YDF8_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0884</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350241.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDF8"/>
    <dbReference type="STRING" id="444157.Tneu_0884"/>
    <dbReference type="GeneID" id="6164589"/>
    <dbReference type="KEGG" id="tne:Tneu_0884"/>
    <dbReference type="eggNOG" id="arCOG05697">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2021585_0_0_2"/>
    <dbReference type="OrthoDB" id="26156at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <evidence type="ECO:0008006" key="3">
        <source>
            <dbReference type="Google" id="ProtNLM"/>
        </source>
    </evidence>
    <sequence length="121" mass="14169" checksum="28A9138E04212A44" modified="2008-05-20" version="1">MADIRTLSRAYNDKTDSIRIKLITLRFLRDQVQNARGNLITFRPSKVAQDLHLYGRQDLRAKTVLIRAFLDDLVQRGYITIIKRSARGKVYGLYKNNKFWDILSAYEPDKILELLESEKIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="45" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDN0</accession>
    <name>B1YDN0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_0958</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350313.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDN0"/>
    <dbReference type="STRING" id="444157.Tneu_0958"/>
    <dbReference type="GeneID" id="6164695"/>
    <dbReference type="KEGG" id="tne:Tneu_0958"/>
    <dbReference type="eggNOG" id="arCOG07156">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_146468_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="116" mass="13010" checksum="EB5E768F30A3A3B4" modified="2008-05-20" version="1">MKEIGFSPFGGVNFDVSVVGGIYIEDLPEELKKAVADKPLLPPTLPTDGWELVDIAEQEPAVAETTVETSRGKFDVRVVAEVVMVSRNINYKTPRNEPVYWAYWVSKVSWTQPRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="71" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDS4</accession>
    <name>B1YDS4_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Tneu_1005</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="4" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350357.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDS4"/>
    <dbReference type="STRING" id="444157.Tneu_1005"/>
    <dbReference type="GeneID" id="6165080"/>
    <dbReference type="KEGG" id="tne:Tneu_1005"/>
    <dbReference type="eggNOG" id="arCOG01144">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_441224_0_0_2"/>
    <dbReference type="OrthoDB" id="7513at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR051158">
        <property type="entry name" value="Metallophosphoesterase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31302:SF28">
        <property type="entry name" value="METALLOPHOSPHOESTERASE, CALCINEURIN SUPERFAMILY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31302">
        <property type="entry name" value="TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="Metallo-dependent phosphatases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="595"/>
            <end position="613"/>
        </location>
    </feature>
    <feature type="domain" description="Calcineurin-like phosphoesterase" evidence="3">
        <location>
            <begin position="107"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="508"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="508"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="530"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="571"/>
            <end position="589"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ACB39937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="631" mass="68167" checksum="69029E92566A933C" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="43" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDV5</accession>
    <name>B1YDV5_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1037</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDV5"/>
    <dbReference type="STRING" id="444157.Tneu_1037"/>
    <dbReference type="KEGG" id="tne:Tneu_1037"/>
    <dbReference type="eggNOG" id="arCOG06988">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2340303_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB39968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="107" mass="12150" checksum="09E9A4CC46C1B079" modified="2008-05-20" version="1">MLINGPISLSVYVVSNLDADIYQTRDFYWSSNYEPAAAPRAAPQPEVRIVGDTLIIRRWEEPPAATVAGLAEVVVYLDGDGRIYNLEVEFLKFYSEKGREALQRARW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="69" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDY0</accession>
    <name>B1YDY0_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molydopterin dinucleotide-binding region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1062</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350412.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="STRING" id="444157.Tneu_1062"/>
    <dbReference type="GeneID" id="6164320"/>
    <dbReference type="KEGG" id="tne:Tneu_1062"/>
    <dbReference type="eggNOG" id="arCOG01491">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_259903_0_0_2"/>
    <dbReference type="OrthoDB" id="23466at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02775">
        <property type="entry name" value="MopB_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.200.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.228.10">
        <property type="entry name" value="Dimethylsulfoxide Reductase, domain 2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050612">
        <property type="entry name" value="Prok_Mopterin_Oxidored"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019546">
        <property type="entry name" value="TAT_signal_bac_arc"/>
    </dbReference>
    <dbReference type="NCBIfam" id="TIGR01409">
        <property type="entry name" value="TAT_signal_seq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43742">
        <property type="entry name" value="TRIMETHYLAMINE-N-OXIDE REDUCTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="ADC-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53706">
        <property type="entry name" value="Formate dehydrogenase/DMSO reductase, domains 1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Molybdopterin dinucleotide-binding" evidence="1">
        <location>
            <begin position="1012"/>
            <end position="1080"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="1318" mass="150967" checksum="0F27ECED48601B19" modified="2008-05-20" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="63" xmlns="https://uniprot.org/uniprot">
    <accession>B1YDY6</accession>
    <name>B1YDY6_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized component of anaerobic dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1068</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB39999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350418.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YDY6"/>
    <dbReference type="STRING" id="444157.Tneu_1068"/>
    <dbReference type="GeneID" id="6164624"/>
    <dbReference type="KEGG" id="tne:Tneu_1068"/>
    <dbReference type="eggNOG" id="arCOG01506">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1507444_0_0_2"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3480.10">
        <property type="entry name" value="TorD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020945">
        <property type="entry name" value="DMSO/NO3_reduct_chaperone"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036411">
        <property type="entry name" value="TorD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR050289">
        <property type="entry name" value="TorD/DmsD_chaperones"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34227">
        <property type="entry name" value="CHAPERONE PROTEIN YCDY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34227:SF1">
        <property type="entry name" value="DIMETHYL SULFOXIDE REDUCTASE CHAPERONE-RELATED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02613">
        <property type="entry name" value="Nitrate_red_del"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89155">
        <property type="entry name" value="TorD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB39999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="178" mass="20413" checksum="F859E7F6D688F3DE" modified="2008-05-20" version="1">MSSAGMYFFLSRLVLKELEPAELPQVEKVAAELPEPYRSAMLGELKREEAYLRLRVDYTKTFIQYVHPYESVFRDPSGLLCTDLSSEVVRFYRKMGYEPDLREARVRCGDHLGLELAFVGILLEEGKTAEALQFLERHLLRWGPLAGIAIREAASTPFYSAVGDLVVKFLLEDYENLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="37" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE34</accession>
    <name>B1YE34_PYRNV</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Tneu_1116</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="1" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="1">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350466.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE34"/>
    <dbReference type="STRING" id="444157.Tneu_1116"/>
    <dbReference type="GeneID" id="6165804"/>
    <dbReference type="KEGG" id="tne:Tneu_1116"/>
    <dbReference type="eggNOG" id="arCOG11743">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_838420_0_0_2"/>
    <dbReference type="OrthoDB" id="386435at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ACB40047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="357" mass="40292" checksum="4DE62BF4E643BE2A" modified="2008-05-20" version="1">MQELIHLTAVARDVVYHTLRDVISQWDRLSKSRRRAEARVNKLALSDDVEVHRTYAVVEKRGLESRKVLQDLLSAHPIYGELYEHVVKDAPFQDDLVELLAHQTALALALSPAHHVAEGTCKLCNARLHDAVEYSISDLLEGLITQFVLGRHTVAHLYVYGSSKFRHWLIVGQRQGAVDPEKVHEPTVIKELAPPIYAYLASLNLVSNAIDEKLRGYDILGKLALSRGQEKVIVLMGLGNALAKSLLSGLIYKNLDYLRALFASILLADVLIANVADVLERGSVDVRSVMALAHERYMRYREPIETVLNKHSLKKDKAVIYEVWDAVRDSTIKYMIYAAERQEDELKLSDAISFRIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-05-20" modified="2026-01-28" version="51" xmlns="https://uniprot.org/uniprot">
    <accession>B1YE46</accession>
    <name>B1YE46_PYRNV</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Rad50/SbcC-type AAA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Tneu_1129</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)</name>
        <name type="synonym">Thermoproteus neutrophilus</name>
        <dbReference type="NCBI Taxonomy" id="444157"/>
        <lineage>
            <taxon>Archaea</taxon>
            <taxon>Thermoproteota</taxon>
            <taxon>Thermoprotei</taxon>
            <taxon>Thermoproteales</taxon>
            <taxon>Thermoproteaceae</taxon>
            <taxon>Pyrobaculum</taxon>
        </lineage>
    </organism>
    <reference evidence="2" key="1">
        <citation type="submission" date="2008-03" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Thermoproteus neutrophilus V24Sta.</title>
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Bruce D."/>
                <person name="Goodwin L."/>
                <person name="Pitluck S."/>
                <person name="Sims D."/>
                <person name="Brettin T."/>
                <person name="Detter J.C."/>
                <person name="Han C."/>
                <person name="Kuske C.R."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Mikhailova N."/>
                <person name="Biddle J.F."/>
                <person name="Zhang Z."/>
                <person name="Fitz-Gibbon S.T."/>
                <person name="Lowe T.M."/>
                <person name="Saltikov C."/>
                <person name="House C.H."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">V24Sta</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP001014">
        <property type="protein sequence ID" value="ACB40059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012350478.1">
        <property type="nucleotide sequence ID" value="NC_010525.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="B1YE46"/>
    <dbReference type="GeneID" id="6165559"/>
    <dbReference type="KEGG" id="tne:Tneu_1129"/>
    <dbReference type="eggNOG" id="arCOG05422">
        <property type="taxonomic scope" value="Archaea"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_810425_0_0_2"/>
    <dbReference type="OrthoDB" id="375700at2157"/>
    <dbReference type="Proteomes" id="UP000001694">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006302">
        <property type="term" value="P:double-strand break repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="entry name" value="P-loop containing nucleotide triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038729">
        <property type="entry name" value="Rad50/SbcC_AAA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13476">
        <property type="entry name" value="AAA_23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="P-loop containing nucleoside triphosphate hydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rad50/SbcC-type AAA" evidence="1">
        <location>
            <begin position="2"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ACB40059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000001694"/>
        </source>
    </evidence>
    <sequence length="342" mass="37629" checksum="DAAE582459BFD50D" modified="2008-05-20" version="1">MRVVVENFGVIRELNVELPEVFLLFGPNGVGKTTIYAAITAFGYLEWGRGLYLGRHVSAWRRTPRGRVSVSVEGLPFPRSKCYGVPFPHDLVEELRKVSADHANRLAQCDYGRVSYSFVAVAGDEPHVLDFSVELDRELAASPEGLSVEGELERGTEEVARKLALYVARLLRPEPGPAEPFEERIGGYVISPGGAYDEVVGLKLSPEEAGRGVEAIYSVLHRAYTAWDAPLHIDLSEVSLYEPVRLRLVERMLARRRGVTVFESNYVDDVLIALKRGVPAYLVYKTGGGASLLRISSPSDLAKLPPEAEHSLKSMGLSPDLLTSRVKQLASILYEGRPLGVS</sequence>
</entry>
<copyright>
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms Distributed under the Creative Commons Attribution (CC BY 4.0) License
</copyright>
</uniprot>